jbrowse-plugin-mafviewer 1.4.0 → 1.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearMafRenderer/components/LinearMafRendering.js +3 -2
- package/dist/LinearMafRenderer/components/LinearMafRendering.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/features.js +4 -6
- package/dist/LinearMafRenderer/rendering/features.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/insertions.d.ts +1 -1
- package/dist/LinearMafRenderer/rendering/insertions.js +1 -1
- package/dist/LinearMafRenderer/rendering/insertions.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/matches.d.ts +1 -1
- package/dist/LinearMafRenderer/rendering/matches.js +1 -1
- package/dist/LinearMafRenderer/rendering/matches.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/mismatches.d.ts +1 -1
- package/dist/LinearMafRenderer/rendering/mismatches.js +2 -2
- package/dist/LinearMafRenderer/rendering/mismatches.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/text.d.ts +1 -1
- package/dist/LinearMafRenderer/rendering/text.js +1 -1
- package/dist/LinearMafRenderer/rendering/text.js.map +1 -1
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +5 -5
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +3 -3
- package/dist/out.js +10 -16
- package/dist/out.js.map +2 -2
- package/package.json +1 -1
- package/src/LinearMafRenderer/components/LinearMafRendering.tsx +3 -2
- package/src/LinearMafRenderer/rendering/features.ts +0 -10
- package/src/LinearMafRenderer/rendering/insertions.ts +0 -1
- package/src/LinearMafRenderer/rendering/matches.ts +0 -1
- package/src/LinearMafRenderer/rendering/mismatches.ts +1 -2
- package/src/LinearMafRenderer/rendering/text.ts +0 -2
package/package.json
CHANGED
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@@ -31,8 +31,9 @@ const LinearMafRendering = observer(function (props: {
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const x = rbush2.search(offsetX, offsetY, offsetX + 1, offsetY + 1)
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if (x.length) {
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const elt = x.
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const r = elt !==
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+
const elt = x.find(idx => items[idx]?.isInsertion)
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const r = elt !== undefined ? items[elt]! : items[x[0]!]!
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console.log({ x, r })
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const s = samples[r.sampleId]
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return {
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...r,
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@@ -21,8 +21,6 @@ export function processFeatureAlignment(
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AlignmentRecord
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>
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const referenceSeq = feature.get('seq').toLowerCase()
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const featureId =
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feature.id() || `feature_${feature.get('start')}_${feature.get('end')}`
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for (const [sampleId, alignmentData] of Object.entries(alignments)) {
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const row = sampleToRowMap.get(sampleId)
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@@ -42,7 +40,6 @@ export function processFeatureAlignment(
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leftPx,
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rowTop,
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row,
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featureId,
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alignmentData.start,
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alignmentData.chr,
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)
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@@ -53,7 +50,6 @@ export function processFeatureAlignment(
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leftPx,
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rowTop,
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row,
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featureId,
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alignmentData.start,
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alignmentData.chr,
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)
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@@ -64,8 +60,6 @@ export function processFeatureAlignment(
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referenceSeq,
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leftPx,
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rowTop,
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sampleId,
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featureId,
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)
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}
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}
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@@ -83,9 +77,6 @@ export function processFeatureInsertions(
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AlignmentRecord
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>
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const referenceSeq = feature.get('seq').toLowerCase()
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const featureId =
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feature.id() || `feature_${feature.get('start')}_${feature.get('end')}`
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-
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for (const [sampleId, alignmentData] of Object.entries(alignments)) {
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const row = sampleToRowMap.get(sampleId)
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if (row === undefined) {
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@@ -103,7 +94,6 @@ export function processFeatureInsertions(
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rowTop,
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bpPerPx,
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row,
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featureId,
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alignmentData.start,
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alignmentData.chr,
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)
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@@ -22,7 +22,6 @@ export function renderMismatches(
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leftPx: number,
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rowTop: number,
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sampleId: number,
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_featureId: string,
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alignmentStart: number,
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chr: string,
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) {
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@@ -71,7 +70,7 @@ export function renderMismatches(
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pos: genomicOffset + alignmentStart,
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chr,
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base: currentChar!,
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sampleId
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sampleId,
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},
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)
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}
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