npm - jbrowse-plugin-mafviewer - Versions diffs - 1.3.0 → 1.3.1 - Mend

jbrowse-plugin-mafviewer 1.3.0 → 1.3.1

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Files changed (6) hide show

package/dist/jbrowse-plugin-mafviewer.umd.production.min.js CHANGED Viewed

@@ -2,10 +2,10 @@
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Error("interior hyphen");if(n===0)return th(e.substring(1),t,r).neg();for(var i=Gt(qs(r,8)),o=rr,a=0;a<e.length;a+=8){var u=Math.min(8,e.length-a),l=parseInt(e.substring(a,a+u),r);if(u<8){var s=Gt(qs(r,u));o=o.mul(s).add(Gt(l))}else o=o.mul(i),o=o.add(Gt(l))}return o.unsigned=t,o}Te.fromString=th;function $t(e,t){return typeof e=="number"?Gt(e,t):typeof e=="string"?th(e,t):Se(e.low,e.high,typeof t=="boolean"?t:e.unsigned)}Te.fromValue=$t;var d_=65536,Tk=1<<24,ao=d_*d_,v_=ao*ao,p_=v_/2,h_=li(Tk),rr=li(0);Te.ZERO=rr;var Hr=li(0,!0);Te.UZERO=Hr;var oo=li(1);Te.ONE=oo;var m_=li(1,!0);Te.UONE=m_;var eh=li(-1);Te.NEG_ONE=eh;var b_=Se(-1,2147483647,!1);Te.MAX_VALUE=b_;var g_=Se(-1,-1,!0);Te.MAX_UNSIGNED_VALUE=g_;var Tt=Se(0,-2147483648,!1);Te.MIN_VALUE=Tt;var D=Te.prototype;D.toInt=function(){return this.unsigned?this.low>>>0:this.low};D.toNumber=function(){return this.unsigned?(this.high>>>0)*ao+(this.low>>>0):this.high*ao+(this.low>>>0)};D.toString=function(t){if(t=t||10,t<2||36<t)throw RangeError("radix");if(this.isZero())return"0";if(this.isNegative())if(this.eq(Tt)){var r=Gt(t),n=this.div(r),i=n.mul(r).sub(this);return n.toString(t)+i.toInt().toString(t)}else return"-"+this.neg().toString(t);for(var o=Gt(qs(t,6),this.unsigned),a=this,u="";;){var l=a.div(o),s=a.sub(l.mul(o)).toInt()>>>0,c=s.toString(t);if(a=l,a.isZero())return c+u;for(;c.length<6;)c="0"+c;u=""+c+u}};D.getHighBits=function(){return this.high};D.getHighBitsUnsigned=function(){return this.high>>>0};D.getLowBits=function(){return this.low};D.getLowBitsUnsigned=function(){return this.low>>>0};D.getNumBitsAbs=function(){if(this.isNegative())return this.eq(Tt)?64:this.neg().getNumBitsAbs();for(var t=this.high!=0?this.high:this.low,r=31;r>0&&(t&1<<r)==0;r--);return this.high!=0?r+33:r+1};D.isSafeInteger=function(){var t=this.high>>21;return t?this.unsigned?!1:t===-1&&!(this.low===0&&this.high===-2097152):!0};D.isZero=function(){return this.high===0&&this.low===0};D.eqz=D.isZero;D.isNegative=function(){return!this.unsigned&&this.high<0};D.isPositive=function(){return this.unsigned||this.high>=0};D.isOdd=function(){return(this.low&1)===1};D.isEven=function(){return(this.low&1)===0};D.equals=function(t){return dt(t)||(t=$t(t)),this.unsigned!==t.unsigned&&this.high>>>31===1&&t.high>>>31===1?!1:this.high===t.high&&this.low===t.low};D.eq=D.equals;D.notEquals=function(t){return!this.eq(t)};D.neq=D.notEquals;D.ne=D.notEquals;D.lessThan=function(t){return this.comp(t)<0};D.lt=D.lessThan;D.lessThanOrEqual=function(t){return this.comp(t)<=0};D.lte=D.lessThanOrEqual;D.le=D.lessThanOrEqual;D.greaterThan=function(t){return this.comp(t)>0};D.gt=D.greaterThan;D.greaterThanOrEqual=function(t){return this.comp(t)>=0};D.gte=D.greaterThanOrEqual;D.ge=D.greaterThanOrEqual;D.compare=function(t){if(dt(t)||(t=$t(t)),this.eq(t))return 0;var r=this.isNegative(),n=t.isNegative();return r&&!n?-1:!r&&n?1:this.unsigned?t.high>>>0>this.high>>>0||t.high===this.high&&t.low>>>0>this.low>>>0?-1:1:this.sub(t).isNegative()?-1:1};D.comp=D.compare;D.negate=function(){return!this.unsigned&&this.eq(Tt)?Tt:this.not().add(oo)};D.neg=D.negate;D.add=function(t){dt(t)||(t=$t(t));var r=this.high>>>16,n=this.high&65535,i=this.low>>>16,o=this.low&65535,a=t.high>>>16,u=t.high&65535,l=t.low>>>16,s=t.low&65535,c=0,f=0,p=0,d=0;return d+=o+s,p+=d>>>16,d&=65535,p+=i+l,f+=p>>>16,p&=65535,f+=n+u,c+=f>>>16,f&=65535,c+=r+a,c&=65535,Se(p<<16|d,c<<16|f,this.unsigned)};D.subtract=function(t){return dt(t)||(t=$t(t)),this.add(t.neg())};D.sub=D.subtract;D.multiply=function(t){if(this.isZero())return this;if(dt(t)||(t=$t(t)),Ht){var r=Ht.mul(this.low,this.high,t.low,t.high);return Se(r,Ht.get_high(),this.unsigned)}if(t.isZero())return this.unsigned?Hr:rr;if(this.eq(Tt))return t.isOdd()?Tt:rr;if(t.eq(Tt))return this.isOdd()?Tt:rr;if(this.isNegative())return t.isNegative()?this.neg().mul(t.neg()):this.neg().mul(t).neg();if(t.isNegative())return this.mul(t.neg()).neg();if(this.lt(h_)&&t.lt(h_))return Gt(this.toNumber()*t.toNumber(),this.unsigned);var n=this.high>>>16,i=this.high&65535,o=this.low>>>16,a=this.low&65535,u=t.high>>>16,l=t.high&65535,s=t.low>>>16,c=t.low&65535,f=0,p=0,d=0,h=0;return h+=a*c,d+=h>>>16,h&=65535,d+=o*c,p+=d>>>16,d&=65535,d+=a*s,p+=d>>>16,d&=65535,p+=i*c,f+=p>>>16,p&=65535,p+=o*s,f+=p>>>16,p&=65535,p+=a*l,f+=p>>>16,p&=65535,f+=n*c+i*s+o*l+a*u,f&=65535,Se(d<<16|h,f<<16|p,this.unsigned)};D.mul=D.multiply;D.divide=function(t){if(dt(t)||(t=$t(t)),t.isZero())throw Error("division by zero");if(Ht){if(!this.unsigned&&this.high===-2147483648&&t.low===-1&&t.high===-1)return this;var r=(this.unsigned?Ht.div_u:Ht.div_s)(this.low,this.high,t.low,t.high);return Se(r,Ht.get_high(),this.unsigned)}if(this.isZero())return this.unsigned?Hr:rr;var n,i,o;if(this.unsigned){if(t.unsigned||(t=t.toUnsigned()),t.gt(this))return Hr;if(t.gt(this.shru(1)))return m_;o=Hr}else{if(this.eq(Tt)){if(t.eq(oo)||t.eq(eh))return Tt;if(t.eq(Tt))return oo;var a=this.shr(1);return n=a.div(t).shl(1),n.eq(rr)?t.isNegative()?oo:eh:(i=this.sub(t.mul(n)),o=n.add(i.div(t)),o)}else if(t.eq(Tt))return this.unsigned?Hr:rr;if(this.isNegative())return t.isNegative()?this.neg().div(t.neg()):this.neg().div(t).neg();if(t.isNegative())return this.div(t.neg()).neg();o=rr}for(i=this;i.gte(t);){n=Math.max(1,Math.floor(i.toNumber()/t.toNumber()));for(var u=Math.ceil(Math.log(n)/Math.LN2),l=u<=48?1:qs(2,u-48),s=Gt(n),c=s.mul(t);c.isNegative()||c.gt(i);)n-=l,s=Gt(n,this.unsigned),c=s.mul(t);s.isZero()&&(s=oo),o=o.add(s),i=i.sub(c)}return o};D.div=D.divide;D.modulo=function(t){if(dt(t)||(t=$t(t)),Ht){var r=(this.unsigned?Ht.rem_u:Ht.rem_s)(this.low,this.high,t.low,t.high);return Se(r,Ht.get_high(),this.unsigned)}return this.sub(this.div(t).mul(t))};D.mod=D.modulo;D.rem=D.modulo;D.not=function(){return Se(~this.low,~this.high,this.unsigned)};D.countLeadingZeros=function(){return this.high?Math.clz32(this.high):Math.clz32(this.low)+32};D.clz=D.countLeadingZeros;D.countTrailingZeros=function(){return this.low?c_(this.low):c_(this.high)+32};D.ctz=D.countTrailingZeros;D.and=function(t){return dt(t)||(t=$t(t)),Se(this.low&t.low,this.high&t.high,this.unsigned)};D.or=function(t){return dt(t)||(t=$t(t)),Se(this.low|t.low,this.high|t.high,this.unsigned)};D.xor=function(t){return dt(t)||(t=$t(t)),Se(this.low^t.low,this.high^t.high,this.unsigned)};D.shiftLeft=function(t){return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t<32?Se(this.low<<t,this.high<<t|this.low>>>32-t,this.unsigned):Se(0,this.low<<t-32,this.unsigned)};D.shl=D.shiftLeft;D.shiftRight=function(t){return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t<32?Se(this.low>>>t|this.high<<32-t,this.high>>t,this.unsigned):Se(this.high>>t-32,this.high>=0?0:-1,this.unsigned)};D.shr=D.shiftRight;D.shiftRightUnsigned=function(t){return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t<32?Se(this.low>>>t|this.high<<32-t,this.high>>>t,this.unsigned):t===32?Se(this.high,0,this.unsigned):Se(this.high>>>t-32,0,this.unsigned)};D.shru=D.shiftRightUnsigned;D.shr_u=D.shiftRightUnsigned;D.rotateLeft=function(t){var r;return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t===32?Se(this.high,this.low,this.unsigned):t<32?(r=32-t,Se(this.low<<t|this.high>>>r,this.high<<t|this.low>>>r,this.unsigned)):(t-=32,r=32-t,Se(this.high<<t|this.low>>>r,this.low<<t|this.high>>>r,this.unsigned))};D.rotl=D.rotateLeft;D.rotateRight=function(t){var r;return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t===32?Se(this.high,this.low,this.unsigned):t<32?(r=32-t,Se(this.high<<r|this.low>>>t,this.low<<r|this.high>>>t,this.unsigned)):(t-=32,r=32-t,Se(this.low<<r|this.high>>>t,this.high<<r|this.low>>>t,this.unsigned))};D.rotr=D.rotateRight;D.toSigned=function(){return this.unsigned?Se(this.low,this.high,!1):this};D.toUnsigned=function(){return this.unsigned?this:Se(this.low,this.high,!0)};D.toBytes=function(t){return t?this.toBytesLE():this.toBytesBE()};D.toBytesLE=function(){var t=this.high,r=this.low;return[r&255,r>>>8&255,r>>>16&255,r>>>24,t&255,t>>>8&255,t>>>16&255,t>>>24]};D.toBytesBE=function(){var t=this.high,r=this.low;return[t>>>24,t>>>16&255,t>>>8&255,t&255,r>>>24,r>>>16&255,r>>>8&255,r&255]};Te.fromBytes=function(t,r,n){return n?Te.fromBytesLE(t,r):Te.fromBytesBE(t,r)};Te.fromBytesLE=function(t,r){return new Te(t[0]|t[1]<<8|t[2]<<16|t[3]<<24,t[4]|t[5]<<8|t[6]<<16|t[7]<<24,r)};Te.fromBytesBE=function(t,r){return new Te(t[4]<<24|t[5]<<16|t[6]<<8|t[7],t[0]<<24|t[1]<<16|t[2]<<8|t[3],r)};typeof BigInt=="function"&&(Te.fromBigInt=function(t,r){var n=Number(BigInt.asIntN(32,t)),i=Number(BigInt.asIntN(32,t>>BigInt(32)));return Se(n,i,r)},Te.fromValue=function(t,r){return typeof t=="bigint"?Te.fromBigInt(t,r):$t(t,r)},D.toBigInt=function(){var t=BigInt(this.low>>>0),r=BigInt(this.unsigned?this.high>>>0:this.high);return r<<BigInt(32)|t});var y_=Te;var Ha=class{blockPosition;dataPosition;constructor(t,r){this.blockPosition=t,this.dataPosition=r}toString(){return`${this.blockPosition}:${this.dataPosition}`}compareTo(t){return this.blockPosition-t.blockPosition||this.dataPosition-t.dataPosition}};function fi(e){let t=[],r={},n=e.split(/\s*(;|\(|\)|,|:)\s*/);for(let i=0;i<n.length;i++){let o=n[i],a={};switch(o){case"(":r.children=[a],t.push(r),r=a;break;case",":t.at(-1)?.children.push(a),r=a;break;case")":r=t.pop();break;case":":break;default:{let u=n[i-1];u===")"||u==="("||u===","?r.name=o:u===":"&&(r.length=Number.parseFloat(o))}}}return r}function Rk(e){return typeof e[0]=="string"}function cn(e){return Rk(e)?e.map(t=>({id:t,label:t,color:void 0})):e}function __(e){let t=e.split(" "),r=[];for(let n=0;n<t.length;){let i=t[n++];if(i==="i"){let o=+t[n++],[a,u]=t[n++].split(".");r.push({type:i,row:o,asm:a,ref:u,start:+t[n++],strand:t[n++]==="-"?-1:1,length:+t[n++]})}if(i==="s"){let 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Error("interior hyphen");if(n===0)return th(e.substring(1),t,r).neg();for(var i=Gt(qs(r,8)),o=rr,a=0;a<e.length;a+=8){var u=Math.min(8,e.length-a),l=parseInt(e.substring(a,a+u),r);if(u<8){var s=Gt(qs(r,u));o=o.mul(s).add(Gt(l))}else o=o.mul(i),o=o.add(Gt(l))}return o.unsigned=t,o}Te.fromString=th;function $t(e,t){return typeof e=="number"?Gt(e,t):typeof e=="string"?th(e,t):Se(e.low,e.high,typeof t=="boolean"?t:e.unsigned)}Te.fromValue=$t;var d_=65536,Tk=1<<24,ao=d_*d_,v_=ao*ao,p_=v_/2,h_=li(Tk),rr=li(0);Te.ZERO=rr;var Hr=li(0,!0);Te.UZERO=Hr;var oo=li(1);Te.ONE=oo;var m_=li(1,!0);Te.UONE=m_;var eh=li(-1);Te.NEG_ONE=eh;var b_=Se(-1,2147483647,!1);Te.MAX_VALUE=b_;var g_=Se(-1,-1,!0);Te.MAX_UNSIGNED_VALUE=g_;var Tt=Se(0,-2147483648,!1);Te.MIN_VALUE=Tt;var D=Te.prototype;D.toInt=function(){return this.unsigned?this.low>>>0:this.low};D.toNumber=function(){return this.unsigned?(this.high>>>0)*ao+(this.low>>>0):this.high*ao+(this.low>>>0)};D.toString=function(t){if(t=t||10,t<2||36<t)throw RangeError("radix");if(this.isZero())return"0";if(this.isNegative())if(this.eq(Tt)){var r=Gt(t),n=this.div(r),i=n.mul(r).sub(this);return n.toString(t)+i.toInt().toString(t)}else return"-"+this.neg().toString(t);for(var o=Gt(qs(t,6),this.unsigned),a=this,u="";;){var l=a.div(o),s=a.sub(l.mul(o)).toInt()>>>0,c=s.toString(t);if(a=l,a.isZero())return c+u;for(;c.length<6;)c="0"+c;u=""+c+u}};D.getHighBits=function(){return this.high};D.getHighBitsUnsigned=function(){return this.high>>>0};D.getLowBits=function(){return this.low};D.getLowBitsUnsigned=function(){return this.low>>>0};D.getNumBitsAbs=function(){if(this.isNegative())return this.eq(Tt)?64:this.neg().getNumBitsAbs();for(var t=this.high!=0?this.high:this.low,r=31;r>0&&(t&1<<r)==0;r--);return this.high!=0?r+33:r+1};D.isSafeInteger=function(){var t=this.high>>21;return t?this.unsigned?!1:t===-1&&!(this.low===0&&this.high===-2097152):!0};D.isZero=function(){return this.high===0&&this.low===0};D.eqz=D.isZero;D.isNegative=function(){return!this.unsigned&&this.high<0};D.isPositive=function(){return this.unsigned||this.high>=0};D.isOdd=function(){return(this.low&1)===1};D.isEven=function(){return(this.low&1)===0};D.equals=function(t){return dt(t)||(t=$t(t)),this.unsigned!==t.unsigned&&this.high>>>31===1&&t.high>>>31===1?!1:this.high===t.high&&this.low===t.low};D.eq=D.equals;D.notEquals=function(t){return!this.eq(t)};D.neq=D.notEquals;D.ne=D.notEquals;D.lessThan=function(t){return this.comp(t)<0};D.lt=D.lessThan;D.lessThanOrEqual=function(t){return this.comp(t)<=0};D.lte=D.lessThanOrEqual;D.le=D.lessThanOrEqual;D.greaterThan=function(t){return this.comp(t)>0};D.gt=D.greaterThan;D.greaterThanOrEqual=function(t){return this.comp(t)>=0};D.gte=D.greaterThanOrEqual;D.ge=D.greaterThanOrEqual;D.compare=function(t){if(dt(t)||(t=$t(t)),this.eq(t))return 0;var r=this.isNegative(),n=t.isNegative();return r&&!n?-1:!r&&n?1:this.unsigned?t.high>>>0>this.high>>>0||t.high===this.high&&t.low>>>0>this.low>>>0?-1:1:this.sub(t).isNegative()?-1:1};D.comp=D.compare;D.negate=function(){return!this.unsigned&&this.eq(Tt)?Tt:this.not().add(oo)};D.neg=D.negate;D.add=function(t){dt(t)||(t=$t(t));var r=this.high>>>16,n=this.high&65535,i=this.low>>>16,o=this.low&65535,a=t.high>>>16,u=t.high&65535,l=t.low>>>16,s=t.low&65535,c=0,f=0,p=0,d=0;return d+=o+s,p+=d>>>16,d&=65535,p+=i+l,f+=p>>>16,p&=65535,f+=n+u,c+=f>>>16,f&=65535,c+=r+a,c&=65535,Se(p<<16|d,c<<16|f,this.unsigned)};D.subtract=function(t){return dt(t)||(t=$t(t)),this.add(t.neg())};D.sub=D.subtract;D.multiply=function(t){if(this.isZero())return this;if(dt(t)||(t=$t(t)),Ht){var r=Ht.mul(this.low,this.high,t.low,t.high);return Se(r,Ht.get_high(),this.unsigned)}if(t.isZero())return this.unsigned?Hr:rr;if(this.eq(Tt))return t.isOdd()?Tt:rr;if(t.eq(Tt))return this.isOdd()?Tt:rr;if(this.isNegative())return t.isNegative()?this.neg().mul(t.neg()):this.neg().mul(t).neg();if(t.isNegative())return this.mul(t.neg()).neg();if(this.lt(h_)&&t.lt(h_))return Gt(this.toNumber()*t.toNumber(),this.unsigned);var n=this.high>>>16,i=this.high&65535,o=this.low>>>16,a=this.low&65535,u=t.high>>>16,l=t.high&65535,s=t.low>>>16,c=t.low&65535,f=0,p=0,d=0,h=0;return h+=a*c,d+=h>>>16,h&=65535,d+=o*c,p+=d>>>16,d&=65535,d+=a*s,p+=d>>>16,d&=65535,p+=i*c,f+=p>>>16,p&=65535,p+=o*s,f+=p>>>16,p&=65535,p+=a*l,f+=p>>>16,p&=65535,f+=n*c+i*s+o*l+a*u,f&=65535,Se(d<<16|h,f<<16|p,this.unsigned)};D.mul=D.multiply;D.divide=function(t){if(dt(t)||(t=$t(t)),t.isZero())throw Error("division by zero");if(Ht){if(!this.unsigned&&this.high===-2147483648&&t.low===-1&&t.high===-1)return this;var r=(this.unsigned?Ht.div_u:Ht.div_s)(this.low,this.high,t.low,t.high);return Se(r,Ht.get_high(),this.unsigned)}if(this.isZero())return this.unsigned?Hr:rr;var n,i,o;if(this.unsigned){if(t.unsigned||(t=t.toUnsigned()),t.gt(this))return Hr;if(t.gt(this.shru(1)))return m_;o=Hr}else{if(this.eq(Tt)){if(t.eq(oo)||t.eq(eh))return Tt;if(t.eq(Tt))return oo;var a=this.shr(1);return n=a.div(t).shl(1),n.eq(rr)?t.isNegative()?oo:eh:(i=this.sub(t.mul(n)),o=n.add(i.div(t)),o)}else if(t.eq(Tt))return this.unsigned?Hr:rr;if(this.isNegative())return t.isNegative()?this.neg().div(t.neg()):this.neg().div(t).neg();if(t.isNegative())return this.div(t.neg()).neg();o=rr}for(i=this;i.gte(t);){n=Math.max(1,Math.floor(i.toNumber()/t.toNumber()));for(var u=Math.ceil(Math.log(n)/Math.LN2),l=u<=48?1:qs(2,u-48),s=Gt(n),c=s.mul(t);c.isNegative()||c.gt(i);)n-=l,s=Gt(n,this.unsigned),c=s.mul(t);s.isZero()&&(s=oo),o=o.add(s),i=i.sub(c)}return o};D.div=D.divide;D.modulo=function(t){if(dt(t)||(t=$t(t)),Ht){var r=(this.unsigned?Ht.rem_u:Ht.rem_s)(this.low,this.high,t.low,t.high);return Se(r,Ht.get_high(),this.unsigned)}return this.sub(this.div(t).mul(t))};D.mod=D.modulo;D.rem=D.modulo;D.not=function(){return Se(~this.low,~this.high,this.unsigned)};D.countLeadingZeros=function(){return this.high?Math.clz32(this.high):Math.clz32(this.low)+32};D.clz=D.countLeadingZeros;D.countTrailingZeros=function(){return this.low?c_(this.low):c_(this.high)+32};D.ctz=D.countTrailingZeros;D.and=function(t){return dt(t)||(t=$t(t)),Se(this.low&t.low,this.high&t.high,this.unsigned)};D.or=function(t){return dt(t)||(t=$t(t)),Se(this.low|t.low,this.high|t.high,this.unsigned)};D.xor=function(t){return dt(t)||(t=$t(t)),Se(this.low^t.low,this.high^t.high,this.unsigned)};D.shiftLeft=function(t){return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t<32?Se(this.low<<t,this.high<<t|this.low>>>32-t,this.unsigned):Se(0,this.low<<t-32,this.unsigned)};D.shl=D.shiftLeft;D.shiftRight=function(t){return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t<32?Se(this.low>>>t|this.high<<32-t,this.high>>t,this.unsigned):Se(this.high>>t-32,this.high>=0?0:-1,this.unsigned)};D.shr=D.shiftRight;D.shiftRightUnsigned=function(t){return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t<32?Se(this.low>>>t|this.high<<32-t,this.high>>>t,this.unsigned):t===32?Se(this.high,0,this.unsigned):Se(this.high>>>t-32,0,this.unsigned)};D.shru=D.shiftRightUnsigned;D.shr_u=D.shiftRightUnsigned;D.rotateLeft=function(t){var r;return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t===32?Se(this.high,this.low,this.unsigned):t<32?(r=32-t,Se(this.low<<t|this.high>>>r,this.high<<t|this.low>>>r,this.unsigned)):(t-=32,r=32-t,Se(this.high<<t|this.low>>>r,this.low<<t|this.high>>>r,this.unsigned))};D.rotl=D.rotateLeft;D.rotateRight=function(t){var r;return dt(t)&&(t=t.toInt()),(t&=63)===0?this:t===32?Se(this.high,this.low,this.unsigned):t<32?(r=32-t,Se(this.high<<r|this.low>>>t,this.low<<r|this.high>>>t,this.unsigned)):(t-=32,r=32-t,Se(this.low<<r|this.high>>>t,this.high<<r|this.low>>>t,this.unsigned))};D.rotr=D.rotateRight;D.toSigned=function(){return this.unsigned?Se(this.low,this.high,!1):this};D.toUnsigned=function(){return this.unsigned?this:Se(this.low,this.high,!0)};D.toBytes=function(t){return t?this.toBytesLE():this.toBytesBE()};D.toBytesLE=function(){var t=this.high,r=this.low;return[r&255,r>>>8&255,r>>>16&255,r>>>24,t&255,t>>>8&255,t>>>16&255,t>>>24]};D.toBytesBE=function(){var t=this.high,r=this.low;return[t>>>24,t>>>16&255,t>>>8&255,t&255,r>>>24,r>>>16&255,r>>>8&255,r&255]};Te.fromBytes=function(t,r,n){return n?Te.fromBytesLE(t,r):Te.fromBytesBE(t,r)};Te.fromBytesLE=function(t,r){return new Te(t[0]|t[1]<<8|t[2]<<16|t[3]<<24,t[4]|t[5]<<8|t[6]<<16|t[7]<<24,r)};Te.fromBytesBE=function(t,r){return new Te(t[4]<<24|t[5]<<16|t[6]<<8|t[7],t[0]<<24|t[1]<<16|t[2]<<8|t[3],r)};typeof BigInt=="function"&&(Te.fromBigInt=function(t,r){var n=Number(BigInt.asIntN(32,t)),i=Number(BigInt.asIntN(32,t>>BigInt(32)));return Se(n,i,r)},Te.fromValue=function(t,r){return typeof t=="bigint"?Te.fromBigInt(t,r):$t(t,r)},D.toBigInt=function(){var t=BigInt(this.low>>>0),r=BigInt(this.unsigned?this.high>>>0:this.high);return r<<BigInt(32)|t});var y_=Te;var Ha=class{blockPosition;dataPosition;constructor(t,r){this.blockPosition=t,this.dataPosition=r}toString(){return`${this.blockPosition}:${this.dataPosition}`}compareTo(t){return this.blockPosition-t.blockPosition||this.dataPosition-t.dataPosition}};function fi(e){let t=[],r={},n=e.split(/\s*(;|\(|\)|,|:)\s*/);for(let i=0;i<n.length;i++){let o=n[i],a={};switch(o){case"(":r.children=[a],t.push(r),r=a;break;case",":t.at(-1)?.children.push(a),r=a;break;case")":r=t.pop();break;case":":break;default:{let u=n[i-1];u===")"||u==="("||u===","?r.name=o:u===":"&&(r.length=Number.parseFloat(o))}}}return r}function Rk(e){return typeof e[0]=="string"}function cn(e){return Rk(e)?e.map(t=>({id:t,label:t,color:void 0})):e}function __(e){let t=e.split(" "),r=[];for(let n=0;n<t.length;){let i=t[n++];if(i==="i"){let o=+t[n++],[a,u]=t[n++].split(".");r.push({type:i,row:o,asm:a,ref:u,start:+t[n++],strand:t[n++]==="-"?-1:1,length:+t[n++]})}if(i==="s"){let o=+t[n++],[a,u]=t[n++].split(".");r.push({type:i,row:o,asm:a,ref:u,start:+t[n++],strand:t[n++]==="-"?-1:1,length:+t[n++]})}else i==="d"?r.push({type:i,row:+t[n++]}):i==="g"?r.push({type:i,row:+t[n++],gapLen:+t[n++]}):i==="G"&&r.push({type:i,row:+t[n++],gapSubstring:t[n++]})}return r}function w_(e,t){let r=0,n=[],i=new TextDecoder("utf8");for(;r<e.length;){let o=e.indexOf(10,r);if(o===-1)break;let a=e.subarray(r,o),u=i.decode(a).trim();if(u){let l=t(u);l&&n.push(l)}r=o+1}return n}var x_=(e=0)=>+(+e).toFixed(1),$a=class extends S_.BaseFeatureDataAdapter{setupP;cache=new A_.default({cache:new O_.default({maxSize:50}),fill:async({nextEntry:t,firstEntry:r},n,i)=>{let a=await(0,Is.openLocation)(this.getConf("tafGzLocation")).read(t.virtualOffset.blockPosition-r.virtualOffset.blockPosition,r.virtualOffset.blockPosition),l=(await Ps(a)).slice(r.virtualOffset.dataPosition);return this.getChunk(l,{statusCallback:i,signal:n})}});async getRefNames(){let t=await this.setup();return 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KR=N(Lb()),ZR=N(Hb());function $R({regions:e,showAllLetters:t,samples:r,features:n}){let i=e[0],o=new Map(r.map((l,s)=>[l.id,s])),a=i.end-i.start,u=r.map(()=>"-".repeat(a));for(let l of n.values()){let s=l.get("start"),c=l.get("alignments"),f=l.get("seq");for(let[p,d]of Object.entries(c)){let v=d.seq,b=o.get(p);if(b!==void 0){for(let y=0,_=0,w=v.length;y<w;y++)if(f[y]!=="-"){if(v[y]==="-"){let x=s+_-i.start;x>=0&&x<a&&(u[b]=u[b].slice(0,x)+"-"+u[b].slice(x+1))}_++}if(!t){for(let y=0,_=0,w=v.length;y<w;y++)if(f[y]!=="-"){let x=v[y],S=s+_-i.start;S>=0&&S<a&&f[y]===x&&x!=="-"&&x!==" "&&(u[b]=u[b].slice(0,S)+"."+u[b].slice(S+1)),_++}}for(let y=0,_=0,w=v.length;y<w;y++){let x=v[y];if(f[y]!=="-"){if(x!=="-"){let S=s+_-i.start;S>=0&&S<a&&(f[y]!==x&&x!==" "||t)&&(u[b]=u[b].slice(0,S)+x+u[b].slice(S+1))}_++}}}}}return u}var as=class extends ZR.default{name="MafGetSequences";async execute(t,r){let n=await 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getHeader(t){let{adapter:r}=await this.setup(t);return r.getHeader()}getFeatures(t,r){let{statusCallback:n=()=>{}}=r||{};return(0,JR.ObservableCreate)(async i=>{let{adapter:o}=await this.setup(r),a=await(0,xa.updateStatus)("Downloading alignments",n,()=>di(o.getFeatures(t).pipe(pi())));await(0,xa.updateStatus)("Processing alignments",n,()=>{let u="",l=this.getConf("refAssemblyName");for(let s of a){let c=s.get("field5").split(","),f={},p=c.length;for(let d=0;d<p;d++){let h=c[d],v=h.split(":")[5],b=h.split(":"),y=b[0].split("."),[_,w="",...x]=y,S,E="";y.length===2?(S=_,E=w):Number.isNaN(+w)?(S=_,E=[w,...x].join(".")):(S=`${_}.${w}`,E=x.join(".")),S&&(u=u||S,f[S]={chr:E,start:+b[1],srcSize:+b[2],strand:b[3]==="-"?-1:1,unknown:+b[4],seq:v})}i.next(new xa.SimpleFeature({id:s.id(),data:{start:s.get("start"),end:s.get("end"),refName:s.get("refName"),name:s.get("name"),score:s.get("score"),alignments:f,seq:f[l||t.assemblyName]?.seq||f[u]?.seq}}))}}),i.complete()})}async getSamples(t){let r=this.getConf("nhLocation"),n=r.uri==="/path/to/my.nh"?void 0:await(0,XR.openLocation)(r).readFile("utf8");return{samples:cn(this.getConf("samples")),tree:n?fi(n):void 0}}freeResources(){}};var Kb=N(ln());var IZ=(0,Kb.ConfigurationSchema)("MafTabixAdapter",{samples:{type:"frozen",description:"string[] or {id:string,label:string,color?:string}[]",defaultValue:[]},bedGzLocation:{type:"fileLocation",defaultValue:{uri:"/path/to/my.bed.gz.tbi",locationType:"UriLocation"}},refAssemblyName:{type:"string",defaultValue:""},index:(0,Kb.ConfigurationSchema)("Index",{location:{type:"fileLocation",defaultValue:{uri:"/path/to/my.bed.gz.tbi"}},indexType:{type:"string",defaultValue:"TBI"}}),nhLocation:{type:"fileLocation",description:"newick 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