npm - jbrowse-plugin-mafviewer - Versions diffs - 1.2.3 → 1.3.0 - Mend

jbrowse-plugin-mafviewer 1.2.3 → 1.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (147) hide show

package/dist/LinearMafRenderer/makeImageData.js CHANGED Viewed

@@ -1,8 +1,11 @@
 import { createJBrowseTheme } from '@jbrowse/core/ui';
 import { featureSpanPx, measureText } from '@jbrowse/core/util';
 import { fillRect, getCharWidthHeight, getColorBaseMap, getContrastBaseMap, } from './util';
+function getLetter(a, showAsUpperCase) {
+    return showAsUpperCase ? a.toUpperCase() : a;
+}
 export function makeImageData({ ctx, renderArgs, }) {
-    const { regions, bpPerPx, rowHeight, showAllLetters, theme: configTheme, mismatchRendering, samples, rowProportion, features, } = renderArgs;
+    const { regions, bpPerPx, rowHeight, showAllLetters, theme: configTheme, mismatchRendering, samples, rowProportion, features, showAsUpperCase, } = renderArgs;
     const region = regions[0];
     const canvasWidth = (region.end - region.start) / bpPerPx;
     const h = rowHeight * rowProportion;
@@ -24,17 +27,18 @@ export function makeImageData({ ctx, renderArgs, }) {
         const seq = feature.get('seq').toLowerCase();
         const r = Object.entries(vals);
         for (const [sample, val] of r) {
-            const origAlignment = val.data;
+            const origAlignment = val.seq;
             const alignment = origAlignment.toLowerCase();
             const row = sampleToRowMap.get(sample);
             if (row === undefined) {
                 continue;
             }
             const t = rowHeight * row;
+            const t2 = offset + t;
             // gaps
             ctx.beginPath();
             ctx.fillStyle = 'black';
-            for (let i = 0, o = 0; i < alignment.length; i++) {
+            for (let i = 0, o = 0, l = alignment.length; i < l; i++) {
                 if (seq[i] !== '-') {
                     if (alignment[i] === '-') {
                         const l = leftPx + scale * o;
@@ -48,31 +52,31 @@ export function makeImageData({ ctx, renderArgs, }) {
             if (!showAllLetters) {
                 // matches
                 ctx.fillStyle = 'lightgrey';
-                for (let i = 0, o = 0; i < alignment.length; i++) {
+                for (let i = 0, o = 0, l = alignment.length; i < l; i++) {
                     if (seq[i] !== '-') {
                         const c = alignment[i];
                         const l = leftPx + scale * o;
                         if (seq[i] === c && c !== '-' && c !== ' ') {
-                            fillRect(ctx, l, offset + t, scale + f, h, canvasWidth);
+                            fillRect(ctx, l, t2, scale + f, h, canvasWidth);
                         }
                         o++;
                     }
                 }
             }
             // mismatches
-            for (let i = 0, o = 0; i < alignment.length; i++) {
+            for (let i = 0, o = 0, l = alignment.length; i < l; i++) {
                 const c = alignment[i];
                 if (seq[i] !== '-') {
                     if (c !== '-') {
                         const l = leftPx + scale * o;
                         if (seq[i] !== c && c !== ' ') {
-                            fillRect(ctx, l, offset + t, scale + f, h, canvasWidth, mismatchRendering
+                            fillRect(ctx, l, t2, scale + f, h, canvasWidth, mismatchRendering
                                 ? // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
                                     (colorForBase[c] ?? 'black')
                                 : 'orange');
                         }
                         else if (showAllLetters) {
-                            fillRect(ctx, l, offset + t, scale + f, h, canvasWidth, mismatchRendering
+                            fillRect(ctx, l, t2, scale + f, h, canvasWidth, mismatchRendering
                                 ? // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
                                     (colorForBase[c] ?? 'black')
                                 : 'lightblue');
@@ -84,7 +88,7 @@ export function makeImageData({ ctx, renderArgs, }) {
             // font
             const charSizeW = 10;
             if (scale >= charSizeW) {
-                for (let i = 0, o = 0; i < alignment.length; i++) {
+                for (let i = 0, o = 0, l = alignment.length; i < l; i++) {
                     if (seq[i] !== '-') {
                         const l = leftPx + scale * o;
                         const offset = (scale - charSizeW) / 2 + 1;
@@ -94,7 +98,7 @@ export function makeImageData({ ctx, renderArgs, }) {
                                 ? (contrastForBase[c] ?? 'white')
                                 : 'black';
                             if (rowHeight > charHeight) {
-                                ctx.fillText(origAlignment[i] || '', l + offset, hp2 + t + 3);
+                                ctx.fillText(getLetter(origAlignment[i] || '', showAsUpperCase), l + offset, hp2 + t + 3);
                             }
                         }
                         o++;
@@ -110,14 +114,15 @@ export function makeImageData({ ctx, renderArgs, }) {
         const vals = feature.get('alignments');
         const seq = feature.get('seq').toLowerCase();
         for (const [sample, val] of Object.entries(vals)) {
-            const origAlignment = val.data;
+            const origAlignment = val.seq;
             const alignment = origAlignment.toLowerCase();
             const row = sampleToRowMap.get(sample);
             if (row === undefined) {
                 continue;
             }
             const t = rowHeight * row;
-            for (let i = 0, o = 0; i < alignment.length; i++) {
+            const t2 = offset + t;
+            for (let i = 0, o = 0, l = alignment.length; i < l; i++) {
                 let ins = '';
                 while (seq[i] === '-') {
                     if (alignment[i] !== '-' && alignment[i] !== ' ') {
@@ -130,25 +135,25 @@ export function makeImageData({ ctx, renderArgs, }) {
                     if (ins.length > 10) {
                         const txt = `${ins.length}`;
                         if (bpPerPx > 10) {
-                            fillRect(ctx, l - 1, t, 2, h, canvasWidth, 'purple');
+                            fillRect(ctx, l - 1, t2, 2, h, canvasWidth, 'purple');
                         }
                         else if (h > charHeight) {
-                            const rwidth = measureText(txt);
-                            const padding = 5;
-                            fillRect(ctx, l - rwidth / 2 - padding, t, rwidth + 2 * padding, h, canvasWidth, 'purple');
+                            const rwidth = measureText(txt, 10);
+                            const padding = 2;
+                            fillRect(ctx, l - rwidth / 2 - padding, t2, rwidth + 2 * padding, h, canvasWidth, 'purple');
                             ctx.fillStyle = 'white';
                             ctx.fillText(txt, l - rwidth / 2, t + h);
                         }
                         else {
                             const padding = 2;
-                            fillRect(ctx, l - padding, t, 2 * padding, h, canvasWidth, 'purple');
+                            fillRect(ctx, l - padding, t2, 2 * padding, h, canvasWidth, 'purple');
                         }
                     }
                     else {
-                        fillRect(ctx, l, offset + t, 1, h, canvasWidth, 'purple');
+                        fillRect(ctx, l, t2, 1, h, canvasWidth, 'purple');
                         if (bpPerPx < 0.2 && rowHeight > 5) {
-                            fillRect(ctx, l - 2, offset + t, 5, 1, canvasWidth);
-                            fillRect(ctx, l - 2, offset + t + h - 1, 5, 1, canvasWidth);
+                            fillRect(ctx, l - 2, t2, 5, 1, canvasWidth);
+                            fillRect(ctx, l - 2, t2 + h - 1, 5, 1, canvasWidth);
                         }
                     }
                 }

package/dist/LinearMafRenderer/makeImageData.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/MafAddTrackWorkflow/index.js CHANGED Viewed

@@ -1,6 +1,5 @@
 import { AddTrackWorkflowType } from '@jbrowse/core/pluggableElementTypes';
 import { types } from 'mobx-state-tree';
-// locals
 import MultiMAFWidget from './AddTrackWorkflow';
 export default function MafAddTrackWorkflowF(pluginManager) {
     pluginManager.addAddTrackWorkflowType(() => new AddTrackWorkflowType({

package/dist/MafAddTrackWorkflow/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MafAddTrackWorkflow/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,oBAAoB,EAAE,MAAM,qCAAqC,CAAA;AAC1E,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,~~SAAS;AACT,~~OAAO,cAAc,MAAM,oBAAoB,CAAA;AAE/C,MAAM,CAAC,OAAO,UAAU,oBAAoB,CAAC,aAA4B;IACvE,aAAa,CAAC,uBAAuB,CACnC,GAAG,EAAE,CACH,IAAI,oBAAoB,CAAC;QACvB,IAAI,EAAE,WAAW;QACjB,cAAc,EAAE,cAAc;QAC9B,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC;KAC5B,CAAC,CACL,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MafAddTrackWorkflow/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,oBAAoB,EAAE,MAAM,qCAAqC,CAAA;AAC1E,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,OAAO,cAAc,MAAM,oBAAoB,CAAA;AAE/C,MAAM,CAAC,OAAO,UAAU,oBAAoB,CAAC,aAA4B;IACvE,aAAa,CAAC,uBAAuB,CACnC,GAAG,EAAE,CACH,IAAI,oBAAoB,CAAC;QACvB,IAAI,EAAE,WAAW;QACjB,cAAc,EAAE,cAAc;QAC9B,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC;KAC5B,CAAC,CACL,CAAA;AACH,CAAC"}

package/dist/{MafRPC/index.d.ts → MafGetSamples/MafGetSamples.d.ts} RENAMED Viewed

@@ -1,8 +1,7 @@
 import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
-import type PluginManager from '@jbrowse/core/PluginManager';
 import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import type { Region } from '@jbrowse/core/util';
-export declare class MafGetSamples extends RpcMethodTypeWithFiltersAndRenameRegions {
+export default class MafGetSamples extends RpcMethodTypeWithFiltersAndRenameRegions {
     name: string;
     execute(args: {
         adapterConfig: AnyConfigurationModel;
@@ -13,4 +12,3 @@ export declare class MafGetSamples extends RpcMethodTypeWithFiltersAndRenameRegi
         bpPerPx: number;
     }, rpcDriverClassName: string): Promise<any>;
 }
-export default function MafRPCF(pluginManager: PluginManager): void;

package/dist/{MafRPC/index.js → MafGetSamples/MafGetSamples.js} RENAMED Viewed

@@ -1,6 +1,6 @@
 import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
 import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
-export class MafGetSamples extends RpcMethodTypeWithFiltersAndRenameRegions {
+export default class MafGetSamples extends RpcMethodTypeWithFiltersAndRenameRegions {
     name = 'MafGetSamples';
     async execute(args, rpcDriverClassName) {
         const pm = this.pluginManager;
@@ -11,9 +11,4 @@ export class MafGetSamples extends RpcMethodTypeWithFiltersAndRenameRegions {
         return dataAdapter.getSamples(regions, deserializedArgs);
     }
 }
-export default function MafRPCF(pluginManager) {
-    pluginManager.addRpcMethod(() => {
-        return new MafGetSamples(pluginManager);
-    });
-}
-//# sourceMappingURL=index.js.map
+//# sourceMappingURL=MafGetSamples.js.map

package/dist/MafGetSamples/MafGetSamples.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"MafGetSamples.js","sourceRoot":"","sources":["../../src/MafGetSamples/MafGetSamples.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AACzE,OAAO,wCAAwC,MAAM,8EAA8E,CAAA;AAKnI,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,wCAAwC;IACjF,IAAI,GAAG,eAAe,CAAA;IAEtB,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,mBAAmB;QACnB,OAAO,WAAW,CAAC,UAAU,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;IAC1D,CAAC;CACF"}

package/dist/MafGetSamples/index.d.ts ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ import type PluginManager from '@jbrowse/core/PluginManager';
2	+ export default function MafGetSamplesF(pluginManager: PluginManager): void;

package/dist/MafGetSamples/index.js ADDED Viewed

@@ -0,0 +1,7 @@
+import MafGetSamples from './MafGetSamples';
+export default function MafGetSamplesF(pluginManager) {
+    pluginManager.addRpcMethod(() => {
+        return new MafGetSamples(pluginManager);
+    });
+}
+//# sourceMappingURL=index.js.map

package/dist/MafGetSamples/index.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MafGetSamples/index.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAI3C,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,aAA4B;IACjE,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,OAAO,IAAI,aAAa,CAAC,aAAa,CAAC,CAAA;IACzC,CAAC,CAAC,CAAA;AACJ,CAAC"}

package/dist/MafGetSequences/MafGetSequences.d.ts ADDED Viewed

@@ -0,0 +1,16 @@
+import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
+import type { Sample } from '../LinearMafDisplay/types';
+import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { Region } from '@jbrowse/core/util';
+export default class MafGetSequences extends RpcMethodTypeWithFiltersAndRenameRegions {
+    name: string;
+    execute(args: {
+        adapterConfig: AnyConfigurationModel;
+        samples: Sample[];
+        stopToken?: string;
+        sessionId: string;
+        headers?: Record<string, string>;
+        regions: Region[];
+        showAllLetters: boolean;
+    }, rpcDriverClassName: string): Promise<string[]>;
+}

package/dist/MafGetSequences/MafGetSequences.js ADDED Viewed

@@ -0,0 +1,20 @@
+import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
+import { firstValueFrom, toArray } from 'rxjs';
+import { processFeaturesToFasta } from '../util/fastaUtils';
+export default class MafGetSequences extends RpcMethodTypeWithFiltersAndRenameRegions {
+    name = 'MafGetSequences';
+    async execute(args, rpcDriverClassName) {
+        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
+        const { samples, regions, adapterConfig, sessionId, showAllLetters } = deserializedArgs;
+        const dataAdapter = (await getAdapter(this.pluginManager, sessionId, adapterConfig)).dataAdapter;
+        const features = await firstValueFrom(dataAdapter.getFeatures(regions[0], deserializedArgs).pipe(toArray()));
+        return processFeaturesToFasta({
+            features: new Map(features.map(f => [f.id(), f])),
+            samples,
+            regions,
+            showAllLetters,
+        });
+    }
+}
+//# sourceMappingURL=MafGetSequences.js.map

package/dist/MafGetSequences/MafGetSequences.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"MafGetSequences.js","sourceRoot":"","sources":["../../src/MafGetSequences/MafGetSequences.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AACzE,OAAO,wCAAwC,MAAM,8EAA8E,CAAA;AACnI,OAAO,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAE9C,OAAO,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAA;AAO3D,MAAM,CAAC,OAAO,OAAO,eAAgB,SAAQ,wCAAwC;IACnF,IAAI,GAAG,iBAAiB,CAAA;IAExB,KAAK,CAAC,OAAO,CACX,IAQC,EACD,kBAA0B;QAE1B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,cAAc,EAAE,GAClE,gBAAgB,CAAA;QAClB,MAAM,WAAW,GAAG,CAClB,MAAM,UAAU,CAAC,IAAI,CAAC,aAAa,EAAE,SAAS,EAAE,aAAa,CAAC,CAC/D,CAAC,WAAqC,CAAA;QAEvC,MAAM,QAAQ,GAAG,MAAM,cAAc,CACnC,WAAW,CAAC,WAAW,CAAC,OAAO,CAAC,CAAC,CAAE,EAAE,gBAAgB,CAAC,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CACvE,CAAA;QACD,OAAO,sBAAsB,CAAC;YAC5B,QAAQ,EAAE,IAAI,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC;YACjD,OAAO;YACP,OAAO;YACP,cAAc;SACf,CAAC,CAAA;IACJ,CAAC;CACF"}

package/dist/MafGetSequences/index.d.ts ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ import PluginManager from '@jbrowse/core/PluginManager';
2	+ export default function MafGetSequencesF(pluginManager: PluginManager): void;

package/dist/MafGetSequences/index.js ADDED Viewed

@@ -0,0 +1,7 @@
+import MafGetSequences from './MafGetSequences';
+export default function MafGetSequencesF(pluginManager) {
+    pluginManager.addRpcMethod(() => {
+        return new MafGetSequences(pluginManager);
+    });
+}
+//# sourceMappingURL=index.js.map

package/dist/MafGetSequences/index.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MafGetSequences/index.ts"],"names":[],"mappings":"AAEA,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAE/C,MAAM,CAAC,OAAO,UAAU,gBAAgB,CAAC,aAA4B;IACnE,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,OAAO,IAAI,eAAe,CAAC,aAAa,CAAC,CAAA;IAC3C,CAAC,CAAC,CAAA;AACJ,CAAC"}

package/dist/MafTabixAdapter/MafTabixAdapter.d.ts CHANGED Viewed

@@ -19,7 +19,7 @@ export default class MafTabixAdapter extends BaseFeatureDataAdapter {
     getSamples(_query: Region): Promise<{
         samples: {
             id: string;
-            label: string;
+            label?: string;
             color?: string;
         }[];
         tree: Record<string, any> | undefined;

package/dist/MafTabixAdapter/MafTabixAdapter.js CHANGED Viewed

@@ -9,16 +9,14 @@ import { normalize } from '../util';
 export default class MafTabixAdapter extends BaseFeatureDataAdapter {
     setupP;
     async setupPre() {
-        const config = this.config;
         if (!this.getSubAdapter) {
             throw new Error('no getSubAdapter available');
         }
-        const adapter = await this.getSubAdapter({
-            ...getSnapshot(config),
-            type: 'BedTabixAdapter',
-        });
         return {
-            adapter: adapter.dataAdapter,
+            adapter: (await this.getSubAdapter({
+                ...getSnapshot(this.config),
+                type: 'BedTabixAdapter',
+            })).dataAdapter,
         };
     }
     async setupPre2() {
@@ -53,8 +51,8 @@ export default class MafTabixAdapter extends BaseFeatureDataAdapter {
                 for (const feature of features) {
                     const data = feature.get('field5').split(',');
                     const alignments = {};
-                    // eslint-disable-next-line @typescript-eslint/prefer-for-of
-                    for (let j = 0; j < data.length; j++) {
+                    const len = data.length;
+                    for (let j = 0; j < len; j++) {
                         const elt = data[j];
                         const seq = elt.split(':')[5];
                         const ad = elt.split(':');
@@ -82,7 +80,7 @@ export default class MafTabixAdapter extends BaseFeatureDataAdapter {
                                 srcSize: +ad[2],
                                 strand: ad[3] === '-' ? -1 : 1,
                                 unknown: +ad[4],
-                                data: seq,
+                                seq,
                             };
                         }
                     }
@@ -95,8 +93,8 @@ export default class MafTabixAdapter extends BaseFeatureDataAdapter {
                             name: feature.get('name'),
                             score: feature.get('score'),
                             alignments,
-                            seq: alignments[refAssemblyName || query.assemblyName]?.data ||
-                                alignments[firstAssemblyNameFound]?.data,
+                            seq: alignments[refAssemblyName || query.assemblyName]?.seq ||
+                                alignments[firstAssemblyNameFound]?.seq,
                         },
                     }));
                 }

package/dist/MafTabixAdapter/MafTabixAdapter.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/MafTabixAdapter/configSchema.js CHANGED Viewed

@@ -58,6 +58,34 @@ const configSchema = ConfigurationSchema('MafTabixAdapter', {
             locationType: 'UriLocation',
         },
     },
-}, { explicitlyTyped: true });
+}, {
+    explicitlyTyped: true,
+    preProcessSnapshot: snap => {
+        // populate from just snap.uri
+        return snap.uri
+            ? {
+                ...snap,
+                ...(snap.nhUri
+                    ? {
+                        nhLocation: {
+                            uri: snap.nhUri,
+                            baseUri: snap.baseUri,
+                        },
+                    }
+                    : {}),
+                bedGzLocation: {
+                    uri: snap.uri,
+                    baseUri: snap.baseUri,
+                },
+                index: {
+                    location: {
+                        uri: `${snap.uri}.tbi`,
+                        baseUri: snap.baseUri,
+                    },
+                },
+            }
+            : snap;
+    },
+});
 export default configSchema;
 //# sourceMappingURL=configSchema.js.map

package/dist/MafTabixAdapter/configSchema.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/index.js CHANGED Viewed

@@ -5,7 +5,8 @@ import BigMafAdapterF from './BigMafAdapter';
 import LinearMafDisplayF from './LinearMafDisplay';
 import LinearMafRendererF from './LinearMafRenderer';
 import MafAddTrackWorkflowF from './MafAddTrackWorkflow';
-import MafRPCF from './MafRPC';
+import MafGetSamplesF from './MafGetSamples';
+import MafGetSequencesF from './MafGetSequences';
 import MafTabixAdapterF from './MafTabixAdapter';
 import MafTrackF from './MafTrack';
 export default class MafViewerPlugin extends Plugin {
@@ -19,7 +20,8 @@ export default class MafViewerPlugin extends Plugin {
         MafTabixAdapterF(pluginManager);
         BgzipTaffyAdapterF(pluginManager);
         MafAddTrackWorkflowF(pluginManager);
-        MafRPCF(pluginManager);
+        MafGetSequencesF(pluginManager);
+        MafGetSamplesF(pluginManager);
     }
     configure(_pluginManager) { }
 }

package/dist/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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