npm - jbrowse-plugin-mafviewer - Versions diffs - 1.1.4 → 1.2.1 - Mend

jbrowse-plugin-mafviewer 1.1.4 → 1.2.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (62) hide show

package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.d.ts CHANGED Viewed

@@ -1,12 +1,13 @@
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { Feature, Region } from '@jbrowse/core/util';
 import type { IndexData } from './types';
 export default class BgzipTaffyAdapter extends BaseFeatureDataAdapter {
     setupP?: Promise<IndexData>;
     getRefNames(): Promise<string[]>;
-    setup(): Promise<IndexData>;
+    setupPre(): Promise<IndexData>;
+    setup(opts?: BaseOptions): Promise<IndexData>;
     readTaiFile(): Promise<IndexData>;
-    getFeatures(query: Region): import("rxjs").Observable<Feature>;
+    getFeatures(query: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
     getSamples(_query: Region): Promise<{
         samples: {
             id: string;
@@ -15,6 +16,6 @@ export default class BgzipTaffyAdapter extends BaseFeatureDataAdapter {
         }[];
         tree: Record<string, any> | undefined;
     }>;
-    getLines(query: Region): Promise<string[]>;
+    getLines(query: Region, byteRanges: IndexData): Promise<Uint8Array<ArrayBuffer> | undefined>;
     freeResources(): void;
 }

package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js CHANGED Viewed

@@ -1,6 +1,6 @@
 import { unzip } from '@gmod/bgzf-filehandle';
-import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { SimpleFeature } from '@jbrowse/core/util';
+import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { SimpleFeature, updateStatus, } from '@jbrowse/core/util';
 import { openLocation } from '@jbrowse/core/util/io';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
 import Long from 'long';
@@ -8,13 +8,15 @@ import VirtualOffset from './virtualOffset';
 import parseNewick from '../parseNewick';
 import { normalize } from '../util';
 import { parseRowInstructions } from './rowInstructions';
+import { parseLineByLine } from './util';
+const toP = (s = 0) => +(+s).toFixed(1);
 export default class BgzipTaffyAdapter extends BaseFeatureDataAdapter {
     setupP;
     async getRefNames() {
         const data = await this.setup();
         return Object.keys(data);
     }
-    setup() {
+    setupPre() {
         if (!this.setupP) {
             this.setupP = this.readTaiFile().catch((e) => {
                 this.setupP = undefined;
@@ -23,6 +25,10 @@ export default class BgzipTaffyAdapter extends BaseFeatureDataAdapter {
         }
         return this.setupP;
     }
+    setup(opts) {
+        const { statusCallback = () => { } } = opts || {};
+        return updateStatus('Downloading index', statusCallback, () => this.setupPre());
+    }
     async readTaiFile() {
         const text = await openLocation(this.getConf('taiLocation')).readFile('utf8');
         const lines = text
@@ -61,88 +67,102 @@ export default class BgzipTaffyAdapter extends BaseFeatureDataAdapter {
         }
         return entries;
     }
-    getFeatures(query) {
+    getFeatures(query, opts) {
+        const { statusCallback = () => { } } = opts || {};
         return ObservableCreate(async (observer) => {
             try {
-                const lines = await this.getLines(query);
-                const alignments = {};
-                const k = lines.length;
-                const data = [];
-                let a0;
-                for (let j = 0; j < k; j++) {
-                    const line = lines[j];
-                    if (line) {
-                        const [lineData, rowInstructions] = line.split(' ; ');
-                        if (rowInstructions) {
-                            for (const ins of parseRowInstructions(rowInstructions)) {
-                                if (ins.type === 'i') {
-                                    data.splice(ins.row, 0, ins);
-                                    if (!alignments[ins.asm]) {
-                                        alignments[ins.asm] = {
-                                            start: ins.start,
-                                            strand: ins.strand,
-                                            srcSize: ins.length,
-                                            chr: ins.ref,
-                                            data: '',
-                                        };
+                const byteRanges = await this.setup();
+                const buffer = await updateStatus('Downloading alignments', statusCallback, () => this.getLines(query, byteRanges));
+                if (buffer) {
+                    const alignments = {};
+                    const data = [];
+                    let a0;
+                    let j = 0;
+                    let b = 0;
+                    parseLineByLine(buffer, line => {
+                        if (j++ % 100 === 0) {
+                            statusCallback(`Processing ${toP(b / 1_000_000)}/${toP(buffer.length / 1_000_000)}Mb`);
+                        }
+                        b += line.length;
+                        if (line) {
+                            const [lineData, rowInstructions] = line.split(' ; ');
+                            if (rowInstructions) {
+                                for (const ins of parseRowInstructions(rowInstructions)) {
+                                    if (ins.type === 'i') {
+                                        data.splice(ins.row, 0, ins);
+                                        if (!alignments[ins.asm]) {
+                                            alignments[ins.asm] = {
+                                                start: ins.start,
+                                                strand: ins.strand,
+                                                srcSize: ins.length,
+                                                chr: ins.ref,
+                                                data: '',
+                                            };
+                                        }
+                                        const e = alignments[ins.asm];
+                                        e.data += ' '.repeat(Math.max(0, j - e.data.length)); // catch it up
                                     }
-                                    const e = alignments[ins.asm];
-                                    e.data += ' '.repeat(Math.max(0, j - e.data.length)); // catch it up
-                                }
-                                else if (ins.type === 's') {
-                                    if (!alignments[ins.asm]) {
-                                        alignments[ins.asm] = {
-                                            start: ins.start,
-                                            strand: ins.strand,
-                                            srcSize: ins.length,
-                                            chr: ins.ref,
-                                            data: '',
-                                        };
+                                    else if (ins.type === 's') {
+                                        if (!alignments[ins.asm]) {
+                                            alignments[ins.asm] = {
+                                                start: ins.start,
+                                                strand: ins.strand,
+                                                srcSize: ins.length,
+                                                chr: ins.ref,
+                                                data: '',
+                                            };
+                                        }
+                                        const e = alignments[ins.asm];
+                                        e.data += ' '.repeat(Math.max(0, j - e.data.length)); // catch it up
+                                        data[ins.row] = ins;
+                                    }
+                                    else if (ins.type === 'd') {
+                                        data.splice(ins.row, 1);
                                     }
-                                    const e = alignments[ins.asm];
-                                    e.data += ' '.repeat(Math.max(0, j - e.data.length)); // catch it up
-                                    data[ins.row] = ins;
+                                    // no gaps for now(?)
+                                    // else if (ins.type === 'g') {
+                                    // }
+                                    // else if (ins.type === 'G') {
+                                    // }
                                 }
-                                else if (ins.type === 'd') {
-                                    data.splice(ins.row, 1);
+                                if (!a0) {
+                                    a0 = data[0];
                                 }
-                                // no gaps for now(?)
-                                // else if (ins.type === 'g') {
-                                // }
-                                // else if (ins.type === 'G') {
-                                // }
                             }
-                            if (!a0) {
-                                a0 = data[0];
+                            const lineLen = lineData.length;
+                            for (let i = 0; i < lineLen; i++) {
+                                const letter = lineData[i];
+                                const r = data[i];
+                                if (r) {
+                                    alignments[r.asm].data += letter;
+                                }
+                                else {
+                                    // not sure why but chr22_KI270731v1_random.taf.gz ends up here
+                                }
                             }
                         }
-                        const lineLen = lineData.length;
-                        for (let i = 0; i < lineLen; i++) {
-                            const letter = lineData[i];
-                            const r = data[i];
-                            alignments[r.asm].data += letter;
-                        }
+                    });
+                    if (a0) {
+                        const row0 = alignments[a0.asm];
+                        // see
+                        // https://github.com/ComparativeGenomicsToolkit/taffy/blob/f5a5354/docs/taffy_utilities.md#referenced-based-maftaf-and-indexing
+                        // for the significance of row[0]:
+                        //
+                        // "An anchor line in TAF is a column from which all sequence
+                        // coordinates can be deduced without scanning backwards to previous
+                        // lines "
+                        observer.next(new SimpleFeature({
+                            uniqueId: `${row0.start}-${row0.data.length}`,
+                            refName: query.refName,
+                            start: row0.start,
+                            end: row0.start + row0.data.length,
+                            strand: row0.strand,
+                            alignments,
+                            seq: row0.data,
+                        }));
                     }
                 }
-                if (a0) {
-                    const row0 = alignments[a0.asm];
-                    // see
-                    // https://github.com/ComparativeGenomicsToolkit/taffy/blob/f5a5354/docs/taffy_utilities.md#referenced-based-maftaf-and-indexing
-                    // for the significance of row[0]:
-                    //
-                    // "An anchor line in TAF is a column from which all sequence
-                    // coordinates can be deduced without scanning backwards to previous
-                    // lines "
-                    observer.next(new SimpleFeature({
-                        uniqueId: `${row0.start}-${row0.data.length}`,
-                        refName: query.refName,
-                        start: row0.start,
-                        end: row0.start + row0.data.length,
-                        strand: row0.strand,
-                        alignments,
-                        seq: row0.data,
-                    }));
-                }
+                statusCallback('');
                 observer.complete();
             }
             catch (e) {
@@ -162,13 +182,12 @@ export default class BgzipTaffyAdapter extends BaseFeatureDataAdapter {
             tree: nh ? parseNewick(nh) : undefined,
         };
     }
-    async getLines(query) {
-        const byteRanges = await this.setup();
+    // TODO: cache processed large chunks
+    async getLines(query, byteRanges) {
         const file = openLocation(this.getConf('tafGzLocation'));
-        const decoder = new TextDecoder('utf8');
         const records = byteRanges[query.refName];
         if (records) {
-            let firstEntry = records[0];
+            let firstEntry;
             let nextEntry;
             // two pass:
             // first pass: find first block greater than query start, then -1 from
@@ -188,16 +207,17 @@ export default class BgzipTaffyAdapter extends BaseFeatureDataAdapter {
                 }
             }
             nextEntry = nextEntry ?? records.at(-1);
+            // we NEED at least a firstEntry (validate behavior?) because othrwise it fetches whole
+            // file whn you request e.g. out of range region (e.g. taf in chr22:1-100
+            // and you are at chr22:200-300)
             if (firstEntry && nextEntry) {
                 const response = await file.read(nextEntry.virtualOffset.blockPosition -
                     firstEntry.virtualOffset.blockPosition, firstEntry.virtualOffset.blockPosition);
                 const buffer = await unzip(response);
-                return decoder
-                    .decode(buffer.slice(firstEntry.virtualOffset.dataPosition))
-                    .split('\n');
+                return buffer.slice(firstEntry.virtualOffset.dataPosition);
             }
         }
-        return [];
+        return undefined;
     }
     freeResources() { }
 }

package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"BgzipTaffyAdapter.js","sourceRoot":"","sources":["../../src/BgzipTaffyAdapter/BgzipTaffyAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAC7C,OAAO,~~EAAE~~,sBAAsB,~~EAAE~~,MAAM,yCAAyC,CAAA;~~AAChF~~,OAAO,~~EAAmB~~,aAAa,~~EAAE~~,MAAM,oBAAoB,CAAA;~~AACnE~~,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,IAAI,MAAM,MAAM,CAAA;AAEvB,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAC3C,OAAO,WAAW,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AACnC,OAAO,EAAE,oBAAoB,EAAE,MAAM,mBAAmB,CAAA;~~AAYxD~~,MAAM,CAAC,OAAO,OAAO,iBAAkB,SAAQ,sBAAsB;IAC5D,MAAM,CAAqB;IAElC,KAAK,CAAC,WAAW;QACf,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QAC/B,OAAO,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;IAC1B,CAAC;IAED,~~KAAK~~;~~QACH~~,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;YACjB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBACpD,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,IAAI,GAAG,MAAM,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,QAAQ,CACnE,MAAM,CACP,CAAA;QACD,MAAM,KAAK,GAAG,IAAI;aACf,KAAK,CAAC,IAAI,CAAC;aACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;aAClB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACzB,MAAM,OAAO,GAAG,EAAe,CAAA;QAC/B,IAAI,OAAO,GAAG,EAAE,CAAA;QAChB,IAAI,YAAY,GAAG,CAAC,CAAA;QACpB,IAAI,oBAAoB,GAAG,CAAC,CAAA;QAC5B,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;YACzB,MAAM,CAAC,GAAG,EAAE,QAAQ,EAAE,aAAa,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACvD,MAAM,wBAAwB,GAAG,oBAAoB,GAAG,CAAC,aAAc,CAAA;YACvE,MAAM,OAAO,GAAG,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,GAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAE,CAAA;YAE/D,qEAAqE;YACrE,uEAAuE;YACvE,gDAAgD;YAChD,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,CAAC,wBAAwB,CAAC,CAAA;YACnD,MAAM,CAAC,GAAG,CAAC,CAAC,kBAAkB,CAAC,EAAE,CAAC,CAAA;YAClC,MAAM,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;YACvB,MAAM,IAAI,GAAG,IAAI,aAAa,CAAC,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAA;YAE1D,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;gBACtB,OAAO,CAAC,OAAO,CAAC,GAAG,EAAE,CAAA;gBACrB,OAAO,GAAG,EAAE,CAAA;gBACZ,YAAY,GAAG,CAAC,CAAA;gBAChB,oBAAoB,GAAG,CAAC,CAAA;YAC1B,CAAC;YACD,MAAM,SAAS,GAAG,CAAC,QAAS,GAAG,YAAY,CAAA;YAC3C,OAAO,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC;gBACpB,QAAQ,EAAE,SAAS;gBACnB,aAAa,EAAE,IAAI;aACpB,CAAC,CAAA;YACF,OAAO,GAAG,OAAO,CAAA;YACjB,YAAY,GAAG,SAAS,CAAA;YACxB,oBAAoB,GAAG,wBAAwB,CAAA;QACjD,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,WAAW,CAAC,KAAa;~~QACvB~~,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,IAAI,CAAC;gBACH,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAA;~~gBACxC~~,MAAM,UAAU,GAAG,EAAoC,CAAA;~~gBAEvD~~,MAAM,~~CAAC~~,GAAG,~~KAAK~~,~~CAAC~~,~~MAAM~~,CAAA;~~gBACtB~~,~~MAAM,~~IAAI,GAAG,~~EAAa~~,CAAA;~~gBAC1B~~,IAAI,~~EAAO~~,CAAA;~~gBACX~~,~~KAAK~~,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,~~EAAE~~,CAAC,~~EAAE~~,~~EAAE~~,CAAC~~;oBAC3B~~,MAAM,~~IAAI~~,GAAG,~~KAAK~~,CAAC,CAAC,~~CAAE~~,CAAA;~~oBACtB~~,IAAI,IAAI,EAAE,CAAC;~~wBACT~~,MAAM,CAAC,QAAQ,EAAE,eAAe,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;~~wBACrD~~,IAAI,eAAe,EAAE,CAAC;~~4BACpB~~,KAAK,MAAM,GAAG,IAAI,oBAAoB,CAAC,eAAe,CAAC,EAAE,CAAC;~~gCACxD~~,IAAI,GAAG,CAAC,IAAI,KAAK,GAAG,EAAE,CAAC;~~oCACrB~~,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,EAAE,GAAG,CAAC,CAAA;~~oCAC5B~~,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;~~wCACzB~~,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG;~~4CACpB~~,KAAK,EAAE,GAAG,CAAC,KAAK;~~4CAChB~~,MAAM,EAAE,GAAG,CAAC,MAAM;~~4CAClB~~,OAAO,EAAE,GAAG,CAAC,MAAM;~~4CACnB~~,GAAG,EAAE,GAAG,CAAC,GAAG;~~4CACZ~~,IAAI,EAAE,EAAE;~~yCACT~~,CAAA;~~oCACH~~,CAAC;~~oCACD~~,MAAM,CAAC,GAAG,UAAU,CAAC,GAAG,CAAC,GAAG,CAAE,CAAA;~~oCAC9B~~,CAAC,CAAC,IAAI,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAA,CAAC,cAAc;~~gCACrE~~,CAAC;~~qCAAM~~,IAAI,GAAG,CAAC,IAAI,KAAK,GAAG,EAAE,CAAC;~~oCAC5B~~,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;~~wCACzB~~,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG;~~4CACpB~~,KAAK,EAAE,GAAG,CAAC,KAAK;~~4CAChB~~,MAAM,EAAE,GAAG,CAAC,MAAM;~~4CAClB~~,OAAO,EAAE,GAAG,CAAC,MAAM;~~4CACnB~~,GAAG,EAAE,GAAG,CAAC,GAAG;~~4CACZ~~,IAAI,EAAE,EAAE;~~yCACT~~,CAAA;~~oCACH~~,CAAC;~~oCACD~~,MAAM,CAAC,GAAG,UAAU,CAAC,GAAG,CAAC,GAAG,CAAE,CAAA;~~oCAC9B~~,CAAC,CAAC,IAAI,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAA,CAAC,cAAc;~~oCACnE~~,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,GAAG,CAAA;~~gCACrB~~,CAAC;~~qCAAM~~,IAAI,GAAG,CAAC,IAAI,KAAK,GAAG,EAAE,CAAC;~~oCAC5B~~,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,CAAA;~~gCACzB~~,CAAC;~~gCAED~~,qBAAqB;~~gCACrB~~,+BAA+B;~~gCAC~~/B,IAAI;~~gCACJ~~,+BAA+B;~~gCAC~~/B,IAAI;~~4BACN~~,CAAC;~~4BACD~~,IAAI,CAAC,EAAE,EAAE,CAAC;~~gCACR~~,EAAE,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;~~4BACd~~,CAAC;~~wBACH~~,CAAC;~~wBACD~~,MAAM,OAAO,GAAG,QAAS,CAAC,MAAM,CAAA;~~wBAChC~~,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,EAAE,CAAC,EAAE,EAAE,CAAC;~~4BACjC~~,MAAM,MAAM,GAAG,QAAS,CAAC,CAAC,CAAC,CAAA;~~4BAC3B~~,MAAM,CAAC,GAAG,IAAI,CAAC,CAAC,~~CAAE~~,CAAA;~~4BAClB~~,UAAU,CAAC,CAAC,CAAC,GAAG,CAAE,CAAC,IAAI,IAAI,MAAM,CAAA;~~wBACnC~~,CAAC;~~oBACH~~,CAAC;~~gBACH~~,CAAC;~~gBACD~~,IAAI,EAAE,EAAE,CAAC;~~oBACP~~,MAAM,IAAI,GAAG,UAAU,CAAC,EAAE,CAAC,GAAG,CAAE,CAAA;~~oBAEhC~~,MAAM;~~oBACN~~,gIAAgI;~~oBAChI~~,kCAAkC;~~oBAClC~~,EAAE;~~oBACF~~,6DAA6D;~~oBAC7D~~,oEAAoE;~~oBACpE~~,UAAU;~~oBACV~~,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;~~wBAChB~~,QAAQ,EAAE,GAAG,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;~~wBAC7C~~,OAAO,EAAE,KAAK,CAAC,OAAO;~~wBACtB~~,KAAK,EAAE,IAAI,CAAC,KAAK;~~wBACjB~~,GAAG,EAAE,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM;~~wBAClC~~,MAAM,EAAE,IAAI,CAAC,MAAM;~~wBACnB~~,UAAU;~~wBACV~~,GAAG,EAAE,IAAI,CAAC,IAAI;~~qBACf~~,CAAC,CACH,CAAA;gBACH,CAAC;gBACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;YACrB,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YACnB,CAAC;QACH,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,MAAc;QAC7B,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAA;QACxC,MAAM,EAAE,GACN,KAAK,CAAC,GAAG,KAAK,gBAAgB;YAC5B,CAAC,CAAC,SAAS;YACX,CAAC,CAAC,MAAM,YAAY,CAAC,KAAK,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QAEhD,2EAA2E;QAC3E,OAAO;QACP,OAAO;YACL,OAAO,EAAE,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;YAC3C,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;SACvC,CAAA;IACH,CAAC;IAED,KAAK,CAAC,QAAQ,CAAC,KAAa~~;QAC1B~~,~~MAAM,UAAU,GAAG,MAAM,IAAI,CAAC,KAAK,~~EAAE,~~CAAA~~;~~QACrC~~,MAAM,IAAI,GAAG,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,eAAe,CAAC,CAAC,CAAA;~~QAExD~~,MAAM,OAAO,GAAG,~~IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;QACvC,MAAM,OAAO,GAAG,~~UAAU,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;QACzC,IAAI,OAAO,EAAE,CAAC;YACZ,IAAI,UAAU,~~GAAG,OAAO,CAAC,CAAC,CAAC,~~CAAA;~~YAC3B~~,IAAI,SAAS,CAAA;~~YACb~~,YAAY;YACZ,sEAAsE;YACtE,OAAO;YACP,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACxC,IAAI,OAAO,CAAC,CAAC,CAAE,CAAC,QAAQ,IAAI,KAAK,CAAC,KAAK,EAAE,CAAC;oBACxC,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,CAAA;oBACxC,MAAK;gBACP,CAAC;YACH,CAAC;YACD,wEAAwE;YACxE,mBAAmB;YACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACxC,IAAI,KAAK,CAAC,GAAG,IAAI,OAAO,CAAC,CAAC,CAAE,CAAC,QAAQ,EAAE,CAAC;oBACtC,SAAS,GAAG,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;oBAC1B,MAAK;gBACP,CAAC;YACH,CAAC;YAED,SAAS,GAAG,SAAS,IAAI,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;YACvC,IAAI,UAAU,IAAI,SAAS,EAAE,CAAC;gBAC5B,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,IAAI,CAC9B,SAAS,CAAC,aAAa,CAAC,aAAa;oBACnC,UAAU,CAAC,aAAa,CAAC,aAAa,EACxC,UAAU,CAAC,aAAa,CAAC,aAAa,CACvC,CAAA;gBACD,MAAM,MAAM,GAAG,MAAM,KAAK,CAAC,QAAQ,CAAC,CAAA;gBACpC,OAAO,~~OAAO;qBACX,~~MAAM,CAAC,~~MAAM,CAAC,~~KAAK,CAAC,UAAU,CAAC,aAAa,CAAC,YAAY,CAAC,~~CAAC;qBAC3D,KAAK,CAAC,IAAI,CAAC,~~CAAA;~~YAChB~~,CAAC;QACH,CAAC;QACD,OAAO,~~EAAE~~,CAAA;~~IACX~~,CAAC;IAED,aAAa,KAAU,CAAC;CACzB"}
1	+ {"version":3,"file":"BgzipTaffyAdapter.js","sourceRoot":"","sources":["../../src/BgzipTaffyAdapter/BgzipTaffyAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAC7C,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAChD,OAAO,EAGL,aAAa,EACb,YAAY,GACb,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,IAAI,MAAM,MAAM,CAAA;AAEvB,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAC3C,OAAO,WAAW,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AACnC,OAAO,EAAE,oBAAoB,EAAE,MAAM,mBAAmB,CAAA;AACxD,OAAO,EAAE,eAAe,EAAE,MAAM,QAAQ,CAAA;AAaxC,MAAM,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAA;AAEvC,MAAM,CAAC,OAAO,OAAO,iBAAkB,SAAQ,sBAAsB;IAC5D,MAAM,CAAqB;IAElC,KAAK,CAAC,WAAW;QACf,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QAC/B,OAAO,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;IAC1B,CAAC;IAED,QAAQ;QACN,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;YACjB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBACpD,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IACD,KAAK,CAAC,IAAkB;QACtB,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,OAAO,YAAY,CAAC,mBAAmB,EAAE,cAAc,EAAE,GAAG,EAAE,CAC5D,IAAI,CAAC,QAAQ,EAAE,CAChB,CAAA;IACH,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,IAAI,GAAG,MAAM,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,QAAQ,CACnE,MAAM,CACP,CAAA;QACD,MAAM,KAAK,GAAG,IAAI;aACf,KAAK,CAAC,IAAI,CAAC;aACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;aAClB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACzB,MAAM,OAAO,GAAG,EAAe,CAAA;QAC/B,IAAI,OAAO,GAAG,EAAE,CAAA;QAChB,IAAI,YAAY,GAAG,CAAC,CAAA;QACpB,IAAI,oBAAoB,GAAG,CAAC,CAAA;QAC5B,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;YACzB,MAAM,CAAC,GAAG,EAAE,QAAQ,EAAE,aAAa,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACvD,MAAM,wBAAwB,GAAG,oBAAoB,GAAG,CAAC,aAAc,CAAA;YACvE,MAAM,OAAO,GAAG,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,GAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAE,CAAA;YAE/D,qEAAqE;YACrE,uEAAuE;YACvE,gDAAgD;YAChD,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,CAAC,wBAAwB,CAAC,CAAA;YACnD,MAAM,CAAC,GAAG,CAAC,CAAC,kBAAkB,CAAC,EAAE,CAAC,CAAA;YAClC,MAAM,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;YACvB,MAAM,IAAI,GAAG,IAAI,aAAa,CAAC,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAA;YAE1D,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;gBACtB,OAAO,CAAC,OAAO,CAAC,GAAG,EAAE,CAAA;gBACrB,OAAO,GAAG,EAAE,CAAA;gBACZ,YAAY,GAAG,CAAC,CAAA;gBAChB,oBAAoB,GAAG,CAAC,CAAA;YAC1B,CAAC;YACD,MAAM,SAAS,GAAG,CAAC,QAAS,GAAG,YAAY,CAAA;YAC3C,OAAO,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC;gBACpB,QAAQ,EAAE,SAAS;gBACnB,aAAa,EAAE,IAAI;aACpB,CAAC,CAAA;YACF,OAAO,GAAG,OAAO,CAAA;YACjB,YAAY,GAAG,SAAS,CAAA;YACxB,oBAAoB,GAAG,wBAAwB,CAAA;QACjD,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,WAAW,CAAC,KAAa,EAAE,IAAkB;QAC3C,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,IAAI,CAAC;gBACH,MAAM,UAAU,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;gBACrC,MAAM,MAAM,GAAG,MAAM,YAAY,CAC/B,wBAAwB,EACxB,cAAc,EACd,GAAG,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,EAAE,UAAU,CAAC,CACvC,CAAA;gBACD,IAAI,MAAM,EAAE,CAAC;oBACX,MAAM,UAAU,GAAG,EAAoC,CAAA;oBACvD,MAAM,IAAI,GAAG,EAAa,CAAA;oBAC1B,IAAI,EAAO,CAAA;oBACX,IAAI,CAAC,GAAG,CAAC,CAAA;oBACT,IAAI,CAAC,GAAG,CAAC,CAAA;oBACT,eAAe,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE;wBAC7B,IAAI,CAAC,EAAE,GAAG,GAAG,KAAK,CAAC,EAAE,CAAC;4BACpB,cAAc,CACZ,cAAc,GAAG,CAAC,CAAC,GAAG,SAAS,CAAC,IAAI,GAAG,CAAC,MAAM,CAAC,MAAM,GAAG,SAAS,CAAC,IAAI,CACvE,CAAA;wBACH,CAAC;wBACD,CAAC,IAAI,IAAI,CAAC,MAAM,CAAA;wBAChB,IAAI,IAAI,EAAE,CAAC;4BACT,MAAM,CAAC,QAAQ,EAAE,eAAe,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;4BACrD,IAAI,eAAe,EAAE,CAAC;gCACpB,KAAK,MAAM,GAAG,IAAI,oBAAoB,CAAC,eAAe,CAAC,EAAE,CAAC;oCACxD,IAAI,GAAG,CAAC,IAAI,KAAK,GAAG,EAAE,CAAC;wCACrB,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,EAAE,GAAG,CAAC,CAAA;wCAC5B,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;4CACzB,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG;gDACpB,KAAK,EAAE,GAAG,CAAC,KAAK;gDAChB,MAAM,EAAE,GAAG,CAAC,MAAM;gDAClB,OAAO,EAAE,GAAG,CAAC,MAAM;gDACnB,GAAG,EAAE,GAAG,CAAC,GAAG;gDACZ,IAAI,EAAE,EAAE;6CACT,CAAA;wCACH,CAAC;wCACD,MAAM,CAAC,GAAG,UAAU,CAAC,GAAG,CAAC,GAAG,CAAE,CAAA;wCAC9B,CAAC,CAAC,IAAI,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAA,CAAC,cAAc;oCACrE,CAAC;yCAAM,IAAI,GAAG,CAAC,IAAI,KAAK,GAAG,EAAE,CAAC;wCAC5B,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;4CACzB,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG;gDACpB,KAAK,EAAE,GAAG,CAAC,KAAK;gDAChB,MAAM,EAAE,GAAG,CAAC,MAAM;gDAClB,OAAO,EAAE,GAAG,CAAC,MAAM;gDACnB,GAAG,EAAE,GAAG,CAAC,GAAG;gDACZ,IAAI,EAAE,EAAE;6CACT,CAAA;wCACH,CAAC;wCACD,MAAM,CAAC,GAAG,UAAU,CAAC,GAAG,CAAC,GAAG,CAAE,CAAA;wCAC9B,CAAC,CAAC,IAAI,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAA,CAAC,cAAc;wCACnE,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,GAAG,CAAA;oCACrB,CAAC;yCAAM,IAAI,GAAG,CAAC,IAAI,KAAK,GAAG,EAAE,CAAC;wCAC5B,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,CAAA;oCACzB,CAAC;oCAED,qBAAqB;oCACrB,+BAA+B;oCAC/B,IAAI;oCACJ,+BAA+B;oCAC/B,IAAI;gCACN,CAAC;gCACD,IAAI,CAAC,EAAE,EAAE,CAAC;oCACR,EAAE,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;gCACd,CAAC;4BACH,CAAC;4BACD,MAAM,OAAO,GAAG,QAAS,CAAC,MAAM,CAAA;4BAChC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,EAAE,CAAC,EAAE,EAAE,CAAC;gCACjC,MAAM,MAAM,GAAG,QAAS,CAAC,CAAC,CAAC,CAAA;gCAC3B,MAAM,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;gCACjB,IAAI,CAAC,EAAE,CAAC;oCACN,UAAU,CAAC,CAAC,CAAC,GAAG,CAAE,CAAC,IAAI,IAAI,MAAM,CAAA;gCACnC,CAAC;qCAAM,CAAC;oCACN,+DAA+D;gCACjE,CAAC;4BACH,CAAC;wBACH,CAAC;oBACH,CAAC,CAAC,CAAA;oBACF,IAAI,EAAE,EAAE,CAAC;wBACP,MAAM,IAAI,GAAG,UAAU,CAAC,EAAE,CAAC,GAAG,CAAE,CAAA;wBAEhC,MAAM;wBACN,gIAAgI;wBAChI,kCAAkC;wBAClC,EAAE;wBACF,6DAA6D;wBAC7D,oEAAoE;wBACpE,UAAU;wBACV,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;4BAChB,QAAQ,EAAE,GAAG,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;4BAC7C,OAAO,EAAE,KAAK,CAAC,OAAO;4BACtB,KAAK,EAAE,IAAI,CAAC,KAAK;4BACjB,GAAG,EAAE,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM;4BAClC,MAAM,EAAE,IAAI,CAAC,MAAM;4BACnB,UAAU;4BACV,GAAG,EAAE,IAAI,CAAC,IAAI;yBACf,CAAC,CACH,CAAA;oBACH,CAAC;gBACH,CAAC;gBACD,cAAc,CAAC,EAAE,CAAC,CAAA;gBAClB,QAAQ,CAAC,QAAQ,EAAE,CAAA;YACrB,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YACnB,CAAC;QACH,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,MAAc;QAC7B,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAA;QACxC,MAAM,EAAE,GACN,KAAK,CAAC,GAAG,KAAK,gBAAgB;YAC5B,CAAC,CAAC,SAAS;YACX,CAAC,CAAC,MAAM,YAAY,CAAC,KAAK,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QAEhD,2EAA2E;QAC3E,OAAO;QACP,OAAO;YACL,OAAO,EAAE,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;YAC3C,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;SACvC,CAAA;IACH,CAAC;IAED,qCAAqC;IACrC,KAAK,CAAC,QAAQ,CAAC,KAAa,EAAE,UAAqB;QACjD,MAAM,IAAI,GAAG,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,eAAe,CAAC,CAAC,CAAA;QACxD,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;QACzC,IAAI,OAAO,EAAE,CAAC;YACZ,IAAI,UAAU,CAAA;YACd,IAAI,SAAS,CAAA;YAEb,YAAY;YACZ,sEAAsE;YACtE,OAAO;YACP,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACxC,IAAI,OAAO,CAAC,CAAC,CAAE,CAAC,QAAQ,IAAI,KAAK,CAAC,KAAK,EAAE,CAAC;oBACxC,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,CAAA;oBACxC,MAAK;gBACP,CAAC;YACH,CAAC;YACD,wEAAwE;YACxE,mBAAmB;YACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACxC,IAAI,KAAK,CAAC,GAAG,IAAI,OAAO,CAAC,CAAC,CAAE,CAAC,QAAQ,EAAE,CAAC;oBACtC,SAAS,GAAG,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;oBAC1B,MAAK;gBACP,CAAC;YACH,CAAC;YAED,SAAS,GAAG,SAAS,IAAI,OAAO,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;YACvC,uFAAuF;YACvF,yEAAyE;YACzE,gCAAgC;YAChC,IAAI,UAAU,IAAI,SAAS,EAAE,CAAC;gBAC5B,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,IAAI,CAC9B,SAAS,CAAC,aAAa,CAAC,aAAa;oBACnC,UAAU,CAAC,aAAa,CAAC,aAAa,EACxC,UAAU,CAAC,aAAa,CAAC,aAAa,CACvC,CAAA;gBACD,MAAM,MAAM,GAAG,MAAM,KAAK,CAAC,QAAQ,CAAC,CAAA;gBACpC,OAAO,MAAM,CAAC,KAAK,CAAC,UAAU,CAAC,aAAa,CAAC,YAAY,CAAC,CAAA;YAC5D,CAAC;QACH,CAAC;QACD,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,aAAa,KAAU,CAAC;CACzB"}

package/dist/BgzipTaffyAdapter/util.d.ts ADDED Viewed

	@@ -0,0 +1 @@
1	+ export declare function parseLineByLine<T>(buffer: Uint8Array, cb: (line: string) => T \| undefined): T[];

package/dist/BgzipTaffyAdapter/util.js ADDED Viewed

@@ -0,0 +1,22 @@
+export function parseLineByLine(buffer, cb) {
+    let blockStart = 0;
+    const entries = [];
+    const decoder = new TextDecoder('utf8');
+    while (blockStart < buffer.length) {
+        const n = buffer.indexOf(10, blockStart);
+        if (n === -1) {
+            break;
+        }
+        const b = buffer.subarray(blockStart, n);
+        const line = decoder.decode(b).trim();
+        if (line) {
+            const entry = cb(line);
+            if (entry) {
+                entries.push(entry);
+            }
+        }
+        blockStart = n + 1;
+    }
+    return entries;
+}
+//# sourceMappingURL=util.js.map

package/dist/BgzipTaffyAdapter/util.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../../src/BgzipTaffyAdapter/util.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,eAAe,CAC7B,MAAkB,EAClB,EAAmC;IAEnC,IAAI,UAAU,GAAG,CAAC,CAAA;IAClB,MAAM,OAAO,GAAQ,EAAE,CAAA;IACvB,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;IACvC,OAAO,UAAU,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC;QAClC,MAAM,CAAC,GAAG,MAAM,CAAC,OAAO,CAAC,EAAE,EAAE,UAAU,CAAC,CAAA;QACxC,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC;YACb,MAAK;QACP,CAAC;QACD,MAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAC,CAAA;QACxC,MAAM,IAAI,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAA;QACrC,IAAI,IAAI,EAAE,CAAC;YACT,MAAM,KAAK,GAAG,EAAE,CAAC,IAAI,CAAC,CAAA;YACtB,IAAI,KAAK,EAAE,CAAC;gBACV,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YACrB,CAAC;QACH,CAAC;QAED,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;IACpB,CAAC;IACD,OAAO,OAAO,CAAA;AAChB,CAAC"}

package/dist/BigMafAdapter/BigMafAdapter.d.ts CHANGED Viewed

@@ -1,5 +1,6 @@
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { Feature, Region } from '@jbrowse/core/util';
+import type { BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import type { Feature, Region } from '@jbrowse/core/util';
 export default class BigMafAdapter extends BaseFeatureDataAdapter {
     setupP?: Promise<{
         adapter: BaseFeatureDataAdapter;
@@ -12,7 +13,7 @@ export default class BigMafAdapter extends BaseFeatureDataAdapter {
     }>;
     getRefNames(): Promise<string[]>;
     getHeader(): Promise<unknown>;
-    getFeatures(query: Region): import("rxjs").Observable<Feature>;
+    getFeatures(query: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
     getSamples(_query: Region): Promise<{
         samples: {
             id: string;

package/dist/BigMafAdapter/BigMafAdapter.js CHANGED Viewed

@@ -1,5 +1,5 @@
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { SimpleFeature } from '@jbrowse/core/util';
+import { SimpleFeature, updateStatus } from '@jbrowse/core/util';
 import { openLocation } from '@jbrowse/core/util/io';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
 import { getSnapshot } from 'mobx-state-tree';
@@ -37,10 +37,11 @@ export default class BigMafAdapter extends BaseFeatureDataAdapter {
         const { adapter } = await this.setup();
         return adapter.getHeader();
     }
-    getFeatures(query) {
+    getFeatures(query, opts) {
+        const { statusCallback = () => { } } = opts || {};
         return ObservableCreate(async (observer) => {
             const { adapter } = await this.setup();
-            const features = await firstValueFrom(adapter.getFeatures(query).pipe(toArray()));
+            const features = await updateStatus('Downloading alignment', statusCallback, () => firstValueFrom(adapter.getFeatures(query).pipe(toArray())));
             for (const feature of features) {
                 const maf = feature.get('mafBlock');
                 const blocks = maf.split(';');

package/dist/BigMafAdapter/BigMafAdapter.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"BigMafAdapter.js","sourceRoot":"","sources":["../../src/BigMafAdapter/BigMafAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAChF,OAAO,~~EAAmB~~,aAAa,EAAE,MAAM,oBAAoB,CAAA;~~AACnE~~,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAA;AAC7C,OAAO,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAE9C,OAAO,WAAW,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;~~AAUnC~~,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,sBAAsB;IACxD,MAAM,CAA+C;IAE5D,KAAK,CAAC,KAAK;QACT,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;QAC/C,CAAC;QACD,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC;YACvC,GAAG,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC;YAC3B,IAAI,EAAE,eAAe;SACtB,CAAC,CAAA;QACF,OAAO;YACL,OAAO,EAAE,OAAO,CAAC,WAAqC;SACvD,CAAA;IACH,CAAC;IACD,KAAK,CAAC,QAAQ;QACZ,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;YACjB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBAC9C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAED,KAAK,CAAC,SAAS;QACb,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,SAAS,EAAE,CAAA;IAC5B,CAAC;IAED,WAAW,CAAC,KAAa;~~QACvB~~,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;YACtC,MAAM,QAAQ,GAAG,MAAM,cAAc,~~CACnC~~,OAAO,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,~~CAC3C~~,CAAA;YACD,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;gBAC/B,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,UAAU,CAAW,CAAA;gBAC7C,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;gBAC7B,IAAI,GAAuB,CAAA;gBAC3B,MAAM,IAAI,GAAG,EAAc,CAAA;gBAC3B,MAAM,UAAU,GAAG,EAAoC,CAAA;gBACvD,MAAM,OAAO,GAAG,EAAc,CAAA;gBAC9B,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;oBAC3B,IAAI,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;wBAC1B,IAAI,GAAG,EAAE,CAAC;4BACR,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAE,CAAC,CAAA;4BAChC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC;6BAAM,CAAC;4BACN,GAAG,GAAG,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAA;4BAC1B,IAAI,CAAC,IAAI,CAAC,GAAI,CAAC,CAAA;4BACf,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC;oBACH,CAAC;gBACH,CAAC;gBAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;oBACxC,MAAM,GAAG,GAAG,OAAO,CAAC,CAAC,CAAE,CAAA;oBACvB,MAAM,EAAE,GAAG,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;oBAC1B,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,CAAE,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;oBAC3B,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAE,CAAA;oBACjB,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAE,CAAA;oBAEjB,UAAU,CAAC,GAAG,CAAC,GAAG;wBAChB,GAAG,EAAE,GAAG;wBACR,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAE;wBACd,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC,CAAE;wBAChB,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;wBAC9B,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC,CAAE;wBAChB,IAAI,EAAE,IAAI,CAAC,CAAC,CAAE;qBACf,CAAA;gBACH,CAAC;gBACD,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;oBAChB,EAAE,EAAE,OAAO,CAAC,EAAE,EAAE;oBAChB,IAAI,EAAE;wBACJ,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;wBACvB,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC;wBAC/B,GAAG,EAAE,IAAI,CAAC,CAAC,CAAC;wBACZ,UAAU,EAAE,UAAU;qBACvB;iBACF,CAAC,CACH,CAAA;YACH,CAAC;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,MAAc;QAC7B,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAA;QACxC,MAAM,EAAE,GACN,KAAK,CAAC,GAAG,KAAK,gBAAgB;YAC5B,CAAC,CAAC,SAAS;YACX,CAAC,CAAC,MAAM,YAAY,CAAC,KAAK,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QAEhD,2EAA2E;QAC3E,OAAO;QACP,OAAO;YACL,OAAO,EAAE,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;YAC3C,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;SACvC,CAAA;IACH,CAAC;IAED,aAAa,KAAU,CAAC;CACzB"}
1	+ {"version":3,"file":"BigMafAdapter.js","sourceRoot":"","sources":["../../src/BigMafAdapter/BigMafAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAChF,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAA;AAChE,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAA;AAC7C,OAAO,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAE9C,OAAO,WAAW,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AAanC,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,sBAAsB;IACxD,MAAM,CAA+C;IAE5D,KAAK,CAAC,KAAK;QACT,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;QAC/C,CAAC;QACD,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC;YACvC,GAAG,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC;YAC3B,IAAI,EAAE,eAAe;SACtB,CAAC,CAAA;QACF,OAAO;YACL,OAAO,EAAE,OAAO,CAAC,WAAqC;SACvD,CAAA;IACH,CAAC;IACD,KAAK,CAAC,QAAQ;QACZ,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;YACjB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBAC9C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAED,KAAK,CAAC,SAAS;QACb,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,SAAS,EAAE,CAAA;IAC5B,CAAC;IAED,WAAW,CAAC,KAAa,EAAE,IAAkB;QAC3C,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;YACtC,MAAM,QAAQ,GAAG,MAAM,YAAY,CACjC,uBAAuB,EACvB,cAAc,EACd,GAAG,EAAE,CAAC,cAAc,CAAC,OAAO,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CACjE,CAAA;YACD,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;gBAC/B,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,UAAU,CAAW,CAAA;gBAC7C,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;gBAC7B,IAAI,GAAuB,CAAA;gBAC3B,MAAM,IAAI,GAAG,EAAc,CAAA;gBAC3B,MAAM,UAAU,GAAG,EAAoC,CAAA;gBACvD,MAAM,OAAO,GAAG,EAAc,CAAA;gBAC9B,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;oBAC3B,IAAI,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;wBAC1B,IAAI,GAAG,EAAE,CAAC;4BACR,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAE,CAAC,CAAA;4BAChC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC;6BAAM,CAAC;4BACN,GAAG,GAAG,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAA;4BAC1B,IAAI,CAAC,IAAI,CAAC,GAAI,CAAC,CAAA;4BACf,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC;oBACH,CAAC;gBACH,CAAC;gBAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;oBACxC,MAAM,GAAG,GAAG,OAAO,CAAC,CAAC,CAAE,CAAA;oBACvB,MAAM,EAAE,GAAG,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;oBAC1B,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,CAAE,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;oBAC3B,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAE,CAAA;oBACjB,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAE,CAAA;oBAEjB,UAAU,CAAC,GAAG,CAAC,GAAG;wBAChB,GAAG,EAAE,GAAG;wBACR,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAE;wBACd,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC,CAAE;wBAChB,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;wBAC9B,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC,CAAE;wBAChB,IAAI,EAAE,IAAI,CAAC,CAAC,CAAE;qBACf,CAAA;gBACH,CAAC;gBACD,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;oBAChB,EAAE,EAAE,OAAO,CAAC,EAAE,EAAE;oBAChB,IAAI,EAAE;wBACJ,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;wBACvB,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC;wBAC/B,GAAG,EAAE,IAAI,CAAC,CAAC,CAAC;wBACZ,UAAU,EAAE,UAAU;qBACvB;iBACF,CAAC,CACH,CAAA;YACH,CAAC;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,MAAc;QAC7B,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAA;QACxC,MAAM,EAAE,GACN,KAAK,CAAC,GAAG,KAAK,gBAAgB;YAC5B,CAAC,CAAC,SAAS;YACX,CAAC,CAAC,MAAM,YAAY,CAAC,KAAK,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QAEhD,2EAA2E;QAC3E,OAAO;QACP,OAAO;YACL,OAAO,EAAE,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;YAC3C,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;SACvC,CAAA;IACH,CAAC;IAED,aAAa,KAAU,CAAC;CACzB"}

package/dist/LinearMafDisplay/components/ColorLegend.js CHANGED Viewed

@@ -3,7 +3,7 @@ import { observer } from 'mobx-react';
 import RectBg from './RectBg';
 import Tree from './Tree';
 const ColorLegend = observer(function ({ model, labelWidth, svgFontSize, }) {
-    const { totalHeight, treeWidth, samples, rowHeight } = model;
+    const { totalHeight, treeWidth, samples = [], rowHeight } = model;
     const canDisplayLabel = rowHeight >= 8;
     const boxHeight = Math.min(20, rowHeight);
     return (React.createElement(React.Fragment, null,

package/dist/LinearMafDisplay/components/ColorLegend.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"ColorLegend.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/ColorLegend.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;~~AAIrC~~,OAAO,MAAM,MAAM,UAAU,CAAA;AAC7B,OAAO,IAAI,MAAM,QAAQ,CAAA;AAEzB,MAAM,WAAW,GAAG,QAAQ,CAAC,UAAU,EACrC,KAAK,EACL,UAAU,EACV,WAAW,GAKZ;IACC,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,OAAO,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;~~IAC5D~~,MAAM,eAAe,GAAG,SAAS,IAAI,CAAC,CAAA;IACtC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;IAEzC,OAAO,CACL;QACE,oBAAC,MAAM,IACL,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,UAAU,GAAG,CAAC,GAAG,SAAS,EACjC,MAAM,EAAE,WAAW,GACnB;QACF,oBAAC,IAAI,IAAC,KAAK,EAAE,KAAK,GAAI;QACtB,2BAAG,SAAS,EAAE,aAAa,SAAS,GAAG,CAAC,KAAK;YAC1C,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,GAAG,EAAE,EAAE,CAAC,CAC5B,oBAAC,MAAM,IACL,GAAG,EAAE,GAAG,MAAM,CAAC,EAAE,IAAI,GAAG,EAAE,EAC1B,CAAC,EAAE,GAAG,GAAG,SAAS,EAClB,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,UAAU,GAAG,CAAC,EACrB,MAAM,EAAE,SAAS,EACjB,KAAK,EAAE,MAAM,CAAC,KAAK,GACnB,CACH,CAAC;YACD,eAAe;gBACd,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,GAAG,EAAE,EAAE,CAAC,CAC3B,8BACE,GAAG,EAAE,GAAG,MAAM,CAAC,EAAE,IAAI,GAAG,EAAE,EAC1B,CAAC,EAAE,GAAG,GAAG,SAAS,GAAG,SAAS,GAAG,CAAC,EAClC,gBAAgB,EAAC,QAAQ,EACzB,CAAC,EAAE,CAAC,EACJ,QAAQ,EAAE,WAAW,IAEpB,MAAM,CAAC,KAAK,CACR,CACR,CAAC;gBACJ,CAAC,CAAC,IAAI,CACN,CACH,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,WAAW,CAAA"}
1	+ {"version":3,"file":"ColorLegend.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/ColorLegend.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAGrC,OAAO,MAAM,MAAM,UAAU,CAAA;AAC7B,OAAO,IAAI,MAAM,QAAQ,CAAA;AAEzB,MAAM,WAAW,GAAG,QAAQ,CAAC,UAAU,EACrC,KAAK,EACL,UAAU,EACV,WAAW,GAKZ;IACC,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,OAAO,GAAG,EAAE,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IACjE,MAAM,eAAe,GAAG,SAAS,IAAI,CAAC,CAAA;IACtC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;IAEzC,OAAO,CACL;QACE,oBAAC,MAAM,IACL,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,UAAU,GAAG,CAAC,GAAG,SAAS,EACjC,MAAM,EAAE,WAAW,GACnB;QACF,oBAAC,IAAI,IAAC,KAAK,EAAE,KAAK,GAAI;QACtB,2BAAG,SAAS,EAAE,aAAa,SAAS,GAAG,CAAC,KAAK;YAC1C,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,GAAG,EAAE,EAAE,CAAC,CAC5B,oBAAC,MAAM,IACL,GAAG,EAAE,GAAG,MAAM,CAAC,EAAE,IAAI,GAAG,EAAE,EAC1B,CAAC,EAAE,GAAG,GAAG,SAAS,EAClB,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,UAAU,GAAG,CAAC,EACrB,MAAM,EAAE,SAAS,EACjB,KAAK,EAAE,MAAM,CAAC,KAAK,GACnB,CACH,CAAC;YACD,eAAe;gBACd,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,GAAG,EAAE,EAAE,CAAC,CAC3B,8BACE,GAAG,EAAE,GAAG,MAAM,CAAC,EAAE,IAAI,GAAG,EAAE,EAC1B,CAAC,EAAE,GAAG,GAAG,SAAS,GAAG,SAAS,GAAG,CAAC,EAClC,gBAAgB,EAAC,QAAQ,EACzB,CAAC,EAAE,CAAC,EACJ,QAAQ,EAAE,WAAW,IAEpB,MAAM,CAAC,KAAK,CACR,CACR,CAAC;gBACJ,CAAC,CAAC,IAAI,CACN,CACH,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,WAAW,CAAA"}

package/dist/LinearMafDisplay/components/ReactComponent.js CHANGED Viewed

@@ -33,7 +33,7 @@ const LinearMafDisplay = observer(function (props) {
         } },
         React.createElement(BaseLinearDisplayComponent, { ...props }),
         React.createElement(YScaleBars, { model: model }),
-        mouseY ? (React.createElement("div", { style: { position: 'relative' } },
+        mouseY && sources ? (React.createElement("div", { style: { position: 'relative' } },
             React.createElement("svg", { className: classes.cursor, width: width, height: height, style: {
                     position: 'absolute',
                     top: scrollTop,

package/dist/LinearMafDisplay/components/ReactComponent.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"ReactComponent.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/ReactComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE/C,OAAO,WAAW,MAAM,8BAA8B,CAAA;AACtD,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,iBAAiB,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AAC9D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,UAAU,MAAM,cAAc,CAAA;AAKrC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,MAAM,EAAE;QACN,aAAa,EAAE,MAAM;KACtB;CACF,CAAC,CAAA;AAEF,MAAM,gBAAgB,GAAG,QAAQ,CAAC,UAAU,KAE3C;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IAChE,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAExC,MAAM,kBAAkB,GAAG,aAAa,CAAC,SAAS,CAChD,wBAAwB,CAC+B,CAAA;IACzD,MAAM,EAAE,0BAA0B,EAAE,GAAG,kBAAkB,CAAC,OAAO,CAAA;IAEjE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,EAAE,KAAK,EAAE,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAEnE,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,EAAE,qBAAqB,EAAE,CAAA;YACjD,MAAM,GAAG,GAAG,IAAI,EAAE,GAAG,IAAI,CAAC,CAAA;YAC1B,MAAM,IAAI,GAAG,IAAI,EAAE,IAAI,IAAI,CAAC,CAAA;YAC5B,SAAS,CAAC,KAAK,CAAC,OAAO,GAAG,GAAG,CAAC,CAAA;YAC9B,SAAS,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,CAAA;QACjC,CAAC,EACD,YAAY,EAAE,GAAG,EAAE;YACjB,SAAS,CAAC,SAAS,CAAC,CAAA;YACpB,SAAS,CAAC,SAAS,CAAC,CAAA;QACtB,CAAC;QAED,oBAAC,0BAA0B,OAAK,KAAK,GAAI;QACzC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI;QAC3B,MAAM,CAAC,CAAC,CAAC,~~CACR~~,6BAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;YAClC,6BACE,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE,KAAK,EACZ,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;oBACL,QAAQ,EAAE,UAAU;oBACpB,GAAG,EAAE,SAAS;iBACf;gBAED,8BACE,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,KAAK,EACT,EAAE,EAAE,MAAM,GAAG,SAAS,EACtB,EAAE,EAAE,MAAM,GAAG,SAAS,EACtB,MAAM,EAAC,OAAO,GACd;gBACF,8BAAM,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,EAAC,OAAO,GAAG,CAC9D;YACN,oBAAC,WAAW;gBACV,oBAAC,aAAa,IACZ,IAAI,EAAE,MAAM,CAAC,OAAO,CAClB,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,SAAS,CAAC,CAAC,IAAI,EAAE,CAC9C;yBACE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,OAAO,IAAI,GAAG,KAAK,IAAI,CAAC;yBAClD,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,IAAI,KAAK,EAAE,CAAC;yBACxC,IAAI,CAAC,IAAI,CAAC,GACb,CACU,CACV,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}
1	+ {"version":3,"file":"ReactComponent.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/ReactComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE/C,OAAO,WAAW,MAAM,8BAA8B,CAAA;AACtD,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,iBAAiB,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AAC9D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,UAAU,MAAM,cAAc,CAAA;AAKrC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,MAAM,EAAE;QACN,aAAa,EAAE,MAAM;KACtB;CACF,CAAC,CAAA;AAEF,MAAM,gBAAgB,GAAG,QAAQ,CAAC,UAAU,KAE3C;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IAChE,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAExC,MAAM,kBAAkB,GAAG,aAAa,CAAC,SAAS,CAChD,wBAAwB,CAC+B,CAAA;IACzD,MAAM,EAAE,0BAA0B,EAAE,GAAG,kBAAkB,CAAC,OAAO,CAAA;IAEjE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,EAAE,KAAK,EAAE,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAEnE,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,EAAE,qBAAqB,EAAE,CAAA;YACjD,MAAM,GAAG,GAAG,IAAI,EAAE,GAAG,IAAI,CAAC,CAAA;YAC1B,MAAM,IAAI,GAAG,IAAI,EAAE,IAAI,IAAI,CAAC,CAAA;YAC5B,SAAS,CAAC,KAAK,CAAC,OAAO,GAAG,GAAG,CAAC,CAAA;YAC9B,SAAS,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,CAAA;QACjC,CAAC,EACD,YAAY,EAAE,GAAG,EAAE;YACjB,SAAS,CAAC,SAAS,CAAC,CAAA;YACpB,SAAS,CAAC,SAAS,CAAC,CAAA;QACtB,CAAC;QAED,oBAAC,0BAA0B,OAAK,KAAK,GAAI;QACzC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI;QAC3B,MAAM,IAAI,OAAO,CAAC,CAAC,CAAC,CACnB,6BAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;YAClC,6BACE,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE,KAAK,EACZ,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;oBACL,QAAQ,EAAE,UAAU;oBACpB,GAAG,EAAE,SAAS;iBACf;gBAED,8BACE,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,KAAK,EACT,EAAE,EAAE,MAAM,GAAG,SAAS,EACtB,EAAE,EAAE,MAAM,GAAG,SAAS,EACtB,MAAM,EAAC,OAAO,GACd;gBACF,8BAAM,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,EAAC,OAAO,GAAG,CAC9D;YACN,oBAAC,WAAW;gBACV,oBAAC,aAAa,IACZ,IAAI,EAAE,MAAM,CAAC,OAAO,CAClB,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,SAAS,CAAC,CAAC,IAAI,EAAE,CAC9C;yBACE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,OAAO,IAAI,GAAG,KAAK,IAAI,CAAC;yBAClD,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,IAAI,KAAK,EAAE,CAAC;yBACxC,IAAI,CAAC,IAAI,CAAC,GACb,CACU,CACV,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}

package/dist/LinearMafDisplay/components/SvgWrapper.js CHANGED Viewed

@@ -6,13 +6,13 @@ const SvgWrapper = observer(function ({ children, model, exportSVG, }) {
         return React.createElement(React.Fragment, null, children);
     }
     else {
-        const { rowHeight, samples } = model;
+        const { totalHeight } = model;
         return (React.createElement("svg", { style: {
                 position: 'absolute',
                 top: 0,
                 left: 0,
                 pointerEvents: 'none',
-                height: samples.length * rowHeight,
+                height: totalHeight,
                 width: getContainingView(model).width,
             } }, children));
     }

package/dist/LinearMafDisplay/components/SvgWrapper.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"SvgWrapper.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/SvgWrapper.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAKrC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EACpC,QAAQ,EACR,KAAK,EACL,SAAS,GAKV;IACC,IAAI,SAAS,EAAE,CAAC;QACd,OAAO,0CAAG,QAAQ,CAAI,CAAA;IACxB,CAAC;SAAM,CAAC;QACN,MAAM,EAAE,~~SAAS~~,EAAE,~~OAAO,EAAE,~~GAAG,KAAK,CAAA;~~QACpC~~,OAAO,CACL,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,aAAa,EAAE,MAAM;gBACrB,MAAM,EAAE,~~OAAO,CAAC,MAAM,GAAG,SAAS~~;~~gBAClC~~,KAAK,EAAE,iBAAiB,CAAC,KAAK,CAAC,CAAC,KAAK;aACtC,IAEA,QAAQ,CACL,CACP,CAAA;IACH,CAAC;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
1	+ {"version":3,"file":"SvgWrapper.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/SvgWrapper.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAKrC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EACpC,QAAQ,EACR,KAAK,EACL,SAAS,GAKV;IACC,IAAI,SAAS,EAAE,CAAC;QACd,OAAO,0CAAG,QAAQ,CAAI,CAAA;IACxB,CAAC;SAAM,CAAC;QACN,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;QAC7B,OAAO,CACL,6BACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,aAAa,EAAE,MAAM;gBACrB,MAAM,EAAE,WAAW;gBACnB,KAAK,EAAE,iBAAiB,CAAC,KAAK,CAAC,CAAC,KAAK;aACtC,IAEA,QAAQ,CACL,CACP,CAAA;IACH,CAAC;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/LinearMafDisplay/components/YScaleBars.js CHANGED Viewed

@@ -11,8 +11,8 @@ export const YScaleBars = observer(function (props) {
     const canDisplayLabel = rowHeight >= 8;
     const minWidth = 20;
     const labelWidth = max(samples
-        .map(s => measureText(s.label, svgFontSize))
-        .map(width => (canDisplayLabel ? width : minWidth)));
+        ?.map(s => measureText(s.label, svgFontSize))
+        .map(width => (canDisplayLabel ? width : minWidth)) || [], 0);
     return (React.createElement(SvgWrapper, { ...props },
         React.createElement(ColorLegend, { model: model, labelWidth: labelWidth, svgFontSize: svgFontSize })));
 });

package/dist/LinearMafDisplay/components/YScaleBars.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"YScaleBars.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/YScaleBars.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,OAAO,WAAW,MAAM,eAAe,CAAA;AACvC,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,EAAE,GAAG,EAAE,MAAM,QAAQ,CAAA;AAE5B,MAAM,CAAC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,KAI5C;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAA;IACxD,MAAM,eAAe,GAAG,SAAS,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,EAAE,CAAA;IAEnB,MAAM,UAAU,GAAG,GAAG,CACpB,OAAO;~~SACJ~~,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,WAAW,CAAC,CAAC,CAAC,KAAK,EAAE,WAAW,CAAC,CAAC;~~SAC3C~~,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,~~CACtD~~,CAAA;IAED,OAAO,CACL,oBAAC,UAAU,OAAK,KAAK;QACnB,oBAAC,WAAW,IACV,KAAK,EAAE,KAAK,EACZ,UAAU,EAAE,UAAU,EACtB,WAAW,EAAE,WAAW,GACxB,CACS,CACd,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
1	+ {"version":3,"file":"YScaleBars.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/YScaleBars.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,OAAO,WAAW,MAAM,eAAe,CAAA;AACvC,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,EAAE,GAAG,EAAE,MAAM,QAAQ,CAAA;AAE5B,MAAM,CAAC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,KAI5C;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAA;IACxD,MAAM,eAAe,GAAG,SAAS,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,EAAE,CAAA;IAEnB,MAAM,UAAU,GAAG,GAAG,CACpB,OAAO;QACL,EAAE,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,WAAW,CAAC,CAAC,CAAC,KAAK,EAAE,WAAW,CAAC,CAAC;SAC5C,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,IAAI,EAAE,EAC3D,CAAC,CACF,CAAA;IAED,OAAO,CACL,oBAAC,UAAU,OAAK,KAAK;QACnB,oBAAC,WAAW,IACV,KAAK,EAAE,KAAK,EACZ,UAAU,EAAE,UAAU,EACtB,WAAW,EAAE,WAAW,GACxB,CACS,CACd,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/LinearMafDisplay/renderSvg.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
 import React from 'react';
-import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
-import { LinearMafDisplayModel } from './stateModel';
+import type { LinearMafDisplayModel } from './stateModel';
+import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
 export declare function renderSvg(self: LinearMafDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;

package/dist/LinearMafDisplay/renderSvg.js CHANGED Viewed

@@ -1,6 +1,5 @@
 import React from 'react';
 import { getContainingView } from '@jbrowse/core/util';
-// locals
 import YScaleBars from './components/YScaleBars';
 export async function renderSvg(self, opts, superRenderSvg) {
     const { height, id } = self;

package/dist/LinearMafDisplay/renderSvg.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"renderSvg.js","sourceRoot":"","sources":["../../src/LinearMafDisplay/renderSvg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;~~AAMtD~~,~~SAAS;AACT,~~OAAO,UAAU,MAAM,yBAAyB,CAAA;~~AAGhD~~,MAAM,CAAC,KAAK,UAAU,SAAS,CAC7B,IAA2B,EAC3B,IAA6B,EAC7B,cAA2E;IAE3E,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE,GAAG,IAAI,CAAA;IAC3B,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAA0B,CAAA;IAC5E,MAAM,MAAM,GAAG,WAAW,EAAE,EAAE,CAAA;IAC9B,OAAO,CACL;QACE;YACE,kCAAU,EAAE,EAAE,MAAM;gBAClB,8BAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CACzC,CACN;QACP,2BAAG,QAAQ,EAAE,QAAQ,MAAM,GAAG;YAC5B,2BAAG,EAAE,EAAC,QAAQ,IAAE,MAAM,cAAc,CAAC,IAAI,CAAC,CAAK;YAC/C,2BAAG,SAAS,EAAE,aAAa,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC,GAAG;gBAClD,oBAAC,UAAU,IAAC,KAAK,EAAE,IAAI,EAAE,WAAW,EAAC,MAAM,EAAC,SAAS,SAAG,CACtD,CACF,CACH,CACJ,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"renderSvg.js","sourceRoot":"","sources":["../../src/LinearMafDisplay/renderSvg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAEtD,OAAO,UAAU,MAAM,yBAAyB,CAAA;AAQhD,MAAM,CAAC,KAAK,UAAU,SAAS,CAC7B,IAA2B,EAC3B,IAA6B,EAC7B,cAA2E;IAE3E,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE,GAAG,IAAI,CAAA;IAC3B,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAA0B,CAAA;IAC5E,MAAM,MAAM,GAAG,WAAW,EAAE,EAAE,CAAA;IAC9B,OAAO,CACL;QACE;YACE,kCAAU,EAAE,EAAE,MAAM;gBAClB,8BAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CACzC,CACN;QACP,2BAAG,QAAQ,EAAE,QAAQ,MAAM,GAAG;YAC5B,2BAAG,EAAE,EAAC,QAAQ,IAAE,MAAM,cAAc,CAAC,IAAI,CAAC,CAAK;YAC/C,2BAAG,SAAS,EAAE,aAAa,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC,GAAG;gBAClD,oBAAC,UAAU,IAAC,KAAK,EAAE,IAAI,EAAE,WAAW,EAAC,MAAM,EAAC,SAAS,SAAG,CACtD,CACF,CACH,CACJ,CAAA;AACH,CAAC"}

package/dist/LinearMafDisplay/stateModel.d.ts CHANGED Viewed

@@ -1,9 +1,9 @@
-import PluginManager from '@jbrowse/core/PluginManager';
-import { AnyConfigurationModel, AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
-import { type HierarchyNode } from 'd3-hierarchy';
-import { Instance } from 'mobx-state-tree';
-import { NodeWithIdsAndLength } from './types';
+import type { NodeWithIdsAndLength } from './types';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationModel, AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
+import type { HierarchyNode } from 'd3-hierarchy';
+import type { Instance } from 'mobx-state-tree';
 interface Sample {
     id: string;
     label: string;
@@ -25,9 +25,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
 } & {
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree" /**
-         * #property
-         */).IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
+        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -58,9 +56,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         setStatus(message: string): void;
         setLoading(newStopToken: string): void;
         setMessage(messageText: string): void;
-        setRendered(props: import("@jbrowse/plugin-linear-genome-view/dist/BaseLinearDisplay/models/serverSideRenderedBlock" /**
-         * #getter
-         */).RenderedProps | undefined): void;
+        setRendered(props: import("@jbrowse/plugin-linear-genome-view/dist/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
         setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
@@ -116,9 +112,15 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+        } & import(
+        /**
+         * #getter
+         */
+        "mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
+            type: import("mobx-state-tree" /**
+             * #getter
+             */).ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
@@ -236,11 +238,11 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     /**
      * #volatile
      */
-    volatileSamples: Sample[];
+    volatileSamples: Sample[] | undefined;
     /**
      * #volatile
      */
-    tree: any;
+    volatileTree: any;
 } & {
     /**
      * #action
@@ -292,7 +294,7 @@ export default function stateModelFactory(configSchema: AnyConfigurationSchemaTy
         id: string;
         label: string;
         color?: string;
-    }[];
+    }[] | undefined;
     /**
      * #getter
      */