jbrowse-plugin-mafviewer 1.1.3 → 1.2.0

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Files changed (62) hide show
  1. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.d.ts +5 -4
  2. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js +103 -82
  3. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js.map +1 -1
  4. package/dist/BgzipTaffyAdapter/util.d.ts +1 -0
  5. package/dist/BgzipTaffyAdapter/util.js +22 -0
  6. package/dist/BgzipTaffyAdapter/util.js.map +1 -0
  7. package/dist/BigMafAdapter/BigMafAdapter.d.ts +3 -2
  8. package/dist/BigMafAdapter/BigMafAdapter.js +4 -3
  9. package/dist/BigMafAdapter/BigMafAdapter.js.map +1 -1
  10. package/dist/LinearMafDisplay/components/ColorLegend.js +1 -1
  11. package/dist/LinearMafDisplay/components/ColorLegend.js.map +1 -1
  12. package/dist/LinearMafDisplay/components/ReactComponent.js +1 -1
  13. package/dist/LinearMafDisplay/components/ReactComponent.js.map +1 -1
  14. package/dist/LinearMafDisplay/components/SvgWrapper.js +2 -2
  15. package/dist/LinearMafDisplay/components/SvgWrapper.js.map +1 -1
  16. package/dist/LinearMafDisplay/components/YScaleBars.js +2 -2
  17. package/dist/LinearMafDisplay/components/YScaleBars.js.map +1 -1
  18. package/dist/LinearMafDisplay/renderSvg.d.ts +2 -2
  19. package/dist/LinearMafDisplay/renderSvg.js +0 -1
  20. package/dist/LinearMafDisplay/renderSvg.js.map +1 -1
  21. package/dist/LinearMafDisplay/stateModel.d.ts +19 -17
  22. package/dist/LinearMafDisplay/stateModel.js +17 -10
  23. package/dist/LinearMafDisplay/stateModel.js.map +1 -1
  24. package/dist/LinearMafRenderer/LinearMafRenderer.d.ts +8 -4
  25. package/dist/LinearMafRenderer/LinearMafRenderer.js +14 -148
  26. package/dist/LinearMafRenderer/LinearMafRenderer.js.map +1 -1
  27. package/dist/LinearMafRenderer/configSchema.d.ts +6 -1
  28. package/dist/LinearMafRenderer/configSchema.js +6 -1
  29. package/dist/LinearMafRenderer/configSchema.js.map +1 -1
  30. package/dist/LinearMafRenderer/makeImageData.d.ts +20 -0
  31. package/dist/LinearMafRenderer/makeImageData.js +144 -0
  32. package/dist/LinearMafRenderer/makeImageData.js.map +1 -0
  33. package/dist/LinearMafRenderer/util.d.ts +6 -1
  34. package/dist/LinearMafRenderer/util.js +17 -0
  35. package/dist/LinearMafRenderer/util.js.map +1 -1
  36. package/dist/MafAddTrackWorkflow/AddTrackWorkflow.d.ts +1 -1
  37. package/dist/MafAddTrackWorkflow/AddTrackWorkflow.js.map +1 -1
  38. package/dist/MafTabixAdapter/MafTabixAdapter.d.ts +9 -6
  39. package/dist/MafTabixAdapter/MafTabixAdapter.js +74 -43
  40. package/dist/MafTabixAdapter/MafTabixAdapter.js.map +1 -1
  41. package/dist/MafTabixAdapter/configSchema.d.ts +7 -0
  42. package/dist/MafTabixAdapter/configSchema.js +7 -0
  43. package/dist/MafTabixAdapter/configSchema.js.map +1 -1
  44. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +7 -8
  45. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +4 -4
  46. package/package.json +2 -2
  47. package/src/BgzipTaffyAdapter/BgzipTaffyAdapter.ts +123 -86
  48. package/src/BgzipTaffyAdapter/util.ts +25 -0
  49. package/src/BigMafAdapter/BigMafAdapter.ts +10 -4
  50. package/src/LinearMafDisplay/components/ColorLegend.tsx +1 -2
  51. package/src/LinearMafDisplay/components/ReactComponent.tsx +1 -1
  52. package/src/LinearMafDisplay/components/SvgWrapper.tsx +2 -2
  53. package/src/LinearMafDisplay/components/YScaleBars.tsx +3 -2
  54. package/src/LinearMafDisplay/renderSvg.tsx +5 -5
  55. package/src/LinearMafDisplay/stateModel.ts +30 -24
  56. package/src/LinearMafRenderer/LinearMafRenderer.ts +21 -176
  57. package/src/LinearMafRenderer/configSchema.ts +6 -1
  58. package/src/LinearMafRenderer/makeImageData.ts +211 -0
  59. package/src/LinearMafRenderer/util.ts +28 -1
  60. package/src/MafAddTrackWorkflow/AddTrackWorkflow.tsx +2 -1
  61. package/src/MafTabixAdapter/MafTabixAdapter.ts +92 -44
  62. package/src/MafTabixAdapter/configSchema.ts +7 -0
package/src/MafTabixAdapter/configSchema.ts CHANGED
@@ -26,6 +26,13 @@ const configSchema = ConfigurationSchema(
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  locationType: 'UriLocation',
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  },
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  },
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+ /**
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+ * #slot
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+ */
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+ refAssemblyName: {
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+ type: 'string',
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+ defaultValue: '',
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+ },
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  index: ConfigurationSchema('Index', {
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  /**
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  * #slot index.location