jbrowse-plugin-mafviewer 1.1.2 → 1.1.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigMafAdapter/BigMafAdapter.d.ts +8 -0
- package/dist/BigMafAdapter/BigMafAdapter.js +15 -0
- package/dist/BigMafAdapter/BigMafAdapter.js.map +1 -1
- package/dist/LinearMafDisplay/components/Tree.js +5 -1
- package/dist/LinearMafDisplay/components/Tree.js.map +1 -1
- package/dist/LinearMafDisplay/stateModel.d.ts +2 -6
- package/dist/LinearMafDisplay/stateModel.js +6 -1
- package/dist/LinearMafDisplay/stateModel.js.map +1 -1
- package/dist/MafAddTrackWorkflow/AddTrackWorkflow.js +2 -2
- package/dist/MafAddTrackWorkflow/AddTrackWorkflow.js.map +1 -1
- package/dist/MafTabixAdapter/MafTabixAdapter.js +16 -3
- package/dist/MafTabixAdapter/MafTabixAdapter.js.map +1 -1
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +8 -8
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +3 -3
- package/package.json +1 -1
- package/src/BigMafAdapter/BigMafAdapter.ts +20 -0
- package/src/LinearMafDisplay/components/Tree.tsx +9 -1
- package/src/LinearMafDisplay/stateModel.ts +3 -1
- package/src/MafAddTrackWorkflow/AddTrackWorkflow.tsx +3 -1
- package/src/MafTabixAdapter/MafTabixAdapter.ts +14 -3
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@@ -13,5 +13,13 @@ export default class BigMafAdapter extends BaseFeatureDataAdapter {
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getRefNames(): Promise<string[]>;
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getHeader(): Promise<unknown>;
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getFeatures(query: Region): import("rxjs").Observable<Feature>;
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getSamples(_query: Region): Promise<{
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samples: {
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id: string;
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label: string;
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color?: string;
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}[];
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tree: Record<string, any> | undefined;
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}>;
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freeResources(): void;
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}
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@@ -1,8 +1,11 @@
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import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
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import { SimpleFeature } from '@jbrowse/core/util';
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import { openLocation } from '@jbrowse/core/util/io';
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import { ObservableCreate } from '@jbrowse/core/util/rxjs';
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import { getSnapshot } from 'mobx-state-tree';
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import { firstValueFrom, toArray } from 'rxjs';
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import parseNewick from '../parseNewick';
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import { normalize } from '../util';
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export default class BigMafAdapter extends BaseFeatureDataAdapter {
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setupP;
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async setup() {
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@@ -87,6 +90,18 @@ export default class BigMafAdapter extends BaseFeatureDataAdapter {
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observer.complete();
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});
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}
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async getSamples(_query) {
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const nhLoc = this.getConf('nhLocation');
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const nh = nhLoc.uri === '/path/to/my.nh'
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? undefined
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: await openLocation(nhLoc).readFile('utf8');
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// TODO: we may need to resolve the exact set of rows in the visible region
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// here
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return {
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samples: normalize(this.getConf('samples')),
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tree: nh ? parseNewick(nh) : undefined,
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};
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}
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freeResources() { }
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}
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//# sourceMappingURL=BigMafAdapter.js.map
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@@ -1 +1 @@
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1
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-
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+
{"version":3,"file":"BigMafAdapter.js","sourceRoot":"","sources":["../../src/BigMafAdapter/BigMafAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAChF,OAAO,EAAmB,aAAa,EAAE,MAAM,oBAAoB,CAAA;AACnE,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAA;AAC7C,OAAO,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAE9C,OAAO,WAAW,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AAUnC,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,sBAAsB;IACxD,MAAM,CAA+C;IAE5D,KAAK,CAAC,KAAK;QACT,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;QAC/C,CAAC;QACD,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC;YACvC,GAAG,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC;YAC3B,IAAI,EAAE,eAAe;SACtB,CAAC,CAAA;QACF,OAAO;YACL,OAAO,EAAE,OAAO,CAAC,WAAqC;SACvD,CAAA;IACH,CAAC;IACD,KAAK,CAAC,QAAQ;QACZ,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;YACjB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBAC9C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAED,KAAK,CAAC,SAAS;QACb,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,SAAS,EAAE,CAAA;IAC5B,CAAC;IAED,WAAW,CAAC,KAAa;QACvB,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;YACtC,MAAM,QAAQ,GAAG,MAAM,cAAc,CACnC,OAAO,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAC3C,CAAA;YACD,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;gBAC/B,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,UAAU,CAAW,CAAA;gBAC7C,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;gBAC7B,IAAI,GAAuB,CAAA;gBAC3B,MAAM,IAAI,GAAG,EAAc,CAAA;gBAC3B,MAAM,UAAU,GAAG,EAAoC,CAAA;gBACvD,MAAM,OAAO,GAAG,EAAc,CAAA;gBAC9B,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;oBAC3B,IAAI,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;wBAC1B,IAAI,GAAG,EAAE,CAAC;4BACR,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAE,CAAC,CAAA;4BAChC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC;6BAAM,CAAC;4BACN,GAAG,GAAG,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAA;4BAC1B,IAAI,CAAC,IAAI,CAAC,GAAI,CAAC,CAAA;4BACf,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;wBACrB,CAAC;oBACH,CAAC;gBACH,CAAC;gBAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;oBACxC,MAAM,GAAG,GAAG,OAAO,CAAC,CAAC,CAAE,CAAA;oBACvB,MAAM,EAAE,GAAG,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;oBAC1B,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,CAAE,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;oBAC3B,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAE,CAAA;oBACjB,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAE,CAAA;oBAEjB,UAAU,CAAC,GAAG,CAAC,GAAG;wBAChB,GAAG,EAAE,GAAG;wBACR,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAE;wBACd,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC,CAAE;wBAChB,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;wBAC9B,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC,CAAE;wBAChB,IAAI,EAAE,IAAI,CAAC,CAAC,CAAE;qBACf,CAAA;gBACH,CAAC;gBACD,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;oBAChB,EAAE,EAAE,OAAO,CAAC,EAAE,EAAE;oBAChB,IAAI,EAAE;wBACJ,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;wBAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;wBACvB,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC;wBAC/B,GAAG,EAAE,IAAI,CAAC,CAAC,CAAC;wBACZ,UAAU,EAAE,UAAU;qBACvB;iBACF,CAAC,CACH,CAAA;YACH,CAAC;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,MAAc;QAC7B,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAA;QACxC,MAAM,EAAE,GACN,KAAK,CAAC,GAAG,KAAK,gBAAgB;YAC5B,CAAC,CAAC,SAAS;YACX,CAAC,CAAC,MAAM,YAAY,CAAC,KAAK,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QAEhD,2EAA2E;QAC3E,OAAO;QACP,OAAO;YACL,OAAO,EAAE,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;YAC3C,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;SACvC,CAAA;IACH,CAAC;IAED,aAAa,KAAU,CAAC;CACzB"}
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@@ -1,7 +1,11 @@
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import React from 'react';
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import { observer } from 'mobx-react';
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const Tree = observer(function ({ model }) {
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const {
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const {
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// this is needed for redrawing after zoom change, similar to react-msaview
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// renderTreeCanvas
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// eslint-disable-next-line @typescript-eslint/no-unused-vars
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rowHeight: _rowHeight, hierarchy, showBranchLen, } = model;
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return (React.createElement(React.Fragment, null, hierarchy
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? [...hierarchy.links()].map(link => {
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{"version":3,"file":"Tree.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/Tree.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,MAAM,IAAI,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAkB;IACvD,MAAM,
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{"version":3,"file":"Tree.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/Tree.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,MAAM,IAAI,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAkB;IACvD,MAAM;IACJ,2EAA2E;IAC3E,mBAAmB;IACnB,8DAA8D;IAC9D,SAAS,EAAE,UAAU,EAErB,SAAS,EACT,aAAa,GACd,GAAG,KAAK,CAAA;IAET,OAAO,CACL,0CACG,SAAS;QACR,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;YAChC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;YAC/B,MAAM,EAAE,GAAG,MAAM,CAAC,CAAE,CAAA;YACpB,MAAM,EAAE,GAAG,MAAM,CAAC,CAAE,CAAA;YACpB,MAAM,EAAE,GAAG,aAAa,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAA;YAChD,MAAM,EAAE,GAAG,aAAa,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAA;YAEhD,sEAAsE;YACtE,iEAAiE;YACjE,oBAAoB;YACpB,OAAO,CACL,oBAAC,KAAK,CAAC,QAAQ,IAAC,GAAG,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC;gBAC7C,8BAAM,MAAM,EAAC,OAAO,EAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,GAAI;gBACvD,8BAAM,MAAM,EAAC,OAAO,EAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,GAAI,CACxC,CAClB,CAAA;QACH,CAAC,CAAC;QACJ,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,IAAI,CAAA"}
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error: unknown;
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message: string | undefined;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree"
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* #getter
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*/).ISimpleType<string>, [undefined]>;
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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blockState?: Record<string, any>;
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}>;
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readonly DisplayBlurb: React.FC
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*/<{
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readonly DisplayBlurb: React.FC<{
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model: {
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type: string;
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}))
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.views(self => {
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const {
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const {
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// eslint-disable-next-line @typescript-eslint/unbound-method
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trackMenuItems: superTrackMenuItems,
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renderProps: superRenderProps, } = self;
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return {
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.actions(self => {
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/**
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-
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|
|
1
|
+
{"version":3,"file":"stateModel.js","sourceRoot":"","sources":["../../src/LinearMafDisplay/stateModel.ts"],"names":[],"mappings":"AACA,OAAO,EAGL,sBAAsB,EACtB,OAAO,GACR,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AACvD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAA;AAE3D,OAAO,EAAE,SAAS,EAAE,MAAM,UAAU,CAAA;AACpC,OAAO,EAAsB,OAAO,EAAE,SAAS,EAAE,MAAM,cAAc,CAAA;AACrE,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAY,WAAW,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvE,OAAO,kBAAkB,MAAM,2BAA2B,CAAA;AAC1D,OAAO,EAGL,SAAS,EACT,WAAW,GACZ,MAAM,SAAS,CAAA;AAChB,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AAQnC;;;GAGG;AACH,MAAM,CAAC,OAAO,UAAU,iBAAiB,CACvC,YAAwC,EACxC,aAA4B;IAE5B,MAAM,kBAAkB,GAAG,aAAa,CAAC,SAAS,CAChD,wBAAwB,CAC+B,CAAA;IACzD,MAAM,EAAE,iBAAiB,EAAE,GAAG,kBAAkB,CAAC,OAAO,CAAA;IAExD,OAAO,KAAK;SACT,OAAO,CACN,kBAAkB,EAClB,iBAAiB,EACjB,KAAK,CAAC,KAAK,CAAC;QACV;;WAEG;QACH,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,kBAAkB,CAAC;QACvC;;WAEG;QACH,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;QACnD;;WAEG;QACH,SAAS,EAAE,EAAE;QACb;;WAEG;QACH,aAAa,EAAE,GAAG;QAClB;;WAEG;QACH,cAAc,EAAE,KAAK;QACrB;;WAEG;QACH,iBAAiB,EAAE,IAAI;QAEvB;;WAEG;QACH,aAAa,EAAE,KAAK;QAEpB;;WAEG;QACH,aAAa,EAAE,EAAE;KAClB,CAAC,CACH;SACA,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf;;WAEG;QACH,aAAa,EAAE,IAAI;QACnB;;WAEG;QACH,eAAe,EAAE,EAAc;QAC/B;;WAEG;QACH,IAAI,EAAE,SAAgB;KACvB,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,YAAY,CAAC,CAAS;YACpB,IAAI,CAAC,SAAS,GAAG,CAAC,CAAA;QACpB,CAAC;QACD;;WAEG;QACH,gBAAgB,CAAC,CAAS;YACxB,IAAI,CAAC,aAAa,GAAG,CAAC,CAAA;QACxB,CAAC;QACD;;WAEG;QACH,iBAAiB,CAAC,CAAU;YAC1B,IAAI,CAAC,cAAc,GAAG,CAAC,CAAA;QACzB,CAAC;QACD;;WAEG;QACH,oBAAoB,CAAC,CAAU;YAC7B,IAAI,CAAC,iBAAiB,GAAG,CAAC,CAAA;QAC5B,CAAC;QACD;;WAEG;QACH,UAAU,CAAC,EAAE,OAAO,EAAE,IAAI,EAAwC;YAChE,IAAI,CAAC,eAAe,GAAG,OAAO,CAAA;YAC9B,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,gBAAgB;YAClB,OAAO,mBAAmB,CAAA;QAC5B,CAAC;QAED;;WAEG;QACH,IAAI,cAAc;YAChB,MAAM,UAAU,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,UAAU,CAAC,CAAC,IAAI,EAAE,CAAA;YACpD,MAAM,MAAM,GAAG,UAA6C,CAAA;YAE5D,OAAO,IAAI,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,CAC1C;gBACE,GAAG,MAAM;gBACT,IAAI,EAAE,mBAAmB;aAC1B,EACD,MAAM,CAAC,IAAI,CAAC,CACb,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SAEF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,IAAI;YACN,OAAO,IAAI,CAAC,IAAI;gBACd,CAAC,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC;oBACnC,yEAAyE;qBACxE,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;qBAC9B,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,CAAC,CAAC;gBACtE,CAAC,CAAC,SAAS,CAAA;QACf,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;;WAGG;QACH,IAAI,SAAS;YACX,MAAM,CAAC,GAAG,IAAI,CAAC,IAAI,CAAA;YACnB,IAAI,CAAC,EAAE,CAAC;gBACN,MAAM,KAAK,GAAG,IAAI,CAAC,aAAa,CAAA;gBAChC,MAAM,KAAK,GAAG,OAAO,EAAe;qBACjC,IAAI,CAAC,CAAC,IAAI,CAAC,WAAW,EAAE,KAAK,CAAC,CAAC;qBAC/B,UAAU,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAA;gBACtB,KAAK,CAAC,CAAC,CAAC,CAAA;gBACR,WAAW,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,EAAE,KAAK,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC,CAAA;gBACzD,OAAO,CAAwC,CAAA;YACjD,CAAC;iBAAM,CAAC;gBACN,OAAO,SAAS,CAAA;YAClB,CAAC;QACH,CAAC;QACD;;WAEG;QACH,IAAI,OAAO;YACT,OAAO,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,eAAe,CAAA;QACxE,CAAC;QACD;;WAEG;QACH,IAAI,WAAW;YACb,OAAO,IAAI,CAAC,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,SAAS,CAAA;QAC7C,CAAC;QACD;;WAEG;QACH,IAAI,MAAM;YACR,OAAO,IAAI,CAAC,IAAI,EAAE,MAAM,EAAE,CAAA;QAC5B,CAAC;QACD;;WAEG;QACH,IAAI,QAAQ;YACV,OAAO,IAAI,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAC3C,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM;QACJ,6DAA6D;QAC7D,cAAc,EAAE,mBAAmB;QACnC,6DAA6D;QAC7D,WAAW,EAAE,gBAAgB,GAC9B,GAAG,IAAI,CAAA;QACR,OAAO;YACL;;eAEG;YACH,IAAI,SAAS;gBACX,OAAO,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAA;YAChD,CAAC;YACD;;eAEG;YACH,WAAW;gBACT,MAAM,EACJ,cAAc,EACd,cAAc,EACd,OAAO,EACP,SAAS,EACT,aAAa,EACb,iBAAiB,GAClB,GAAG,IAAI,CAAA;gBACR,OAAO;oBACL,GAAG,gBAAgB,EAAE;oBACrB,MAAM,EAAE,cAAc;oBACtB,OAAO;oBACP,SAAS;oBACT,aAAa;oBACb,cAAc;oBACd,iBAAiB;iBAClB,CAAA;YACH,CAAC;YACD;;eAEG;YACH,cAAc;gBACZ,OAAO;oBACL,GAAG,mBAAmB,EAAE;oBACxB;wBACE,KAAK,EAAE,gBAAgB;wBACvB,OAAO,EAAE,GAAG,EAAE;4BACZ,UAAU,CAAC,IAAI,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;gCAC1C,kBAAkB;gCAClB;oCACE,KAAK,EAAE,IAAI;oCACX,WAAW;iCACZ;6BACF,CAAC,CAAA;wBACJ,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,kBAAkB;wBACzB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,IAAI,CAAC,cAAc;wBAC5B,OAAO,EAAE,GAAG,EAAE;4BACZ,IAAI,CAAC,iBAAiB,CAAC,CAAC,IAAI,CAAC,cAAc,CAAC,CAAA;wBAC9C,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,iCAAiC;wBACxC,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,CAAC,IAAI,CAAC,iBAAiB;wBAChC,OAAO,EAAE,GAAG,EAAE;4BACZ,IAAI,CAAC,oBAAoB,CAAC,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAA;wBACpD,CAAC;qBACF;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,WAAW;Y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@@ -36,7 +36,7 @@ export default function MultiMAFWidget({ model }) {
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React.createElement(FormLabel, null, "File type"),
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React.createElement(RadioGroup, { value: fileTypeChoice, onChange: event => {
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setFileTypeChoice(event.target.value);
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-
} }, ['BigMafAdapter', 'MafTabixAdapter', 'BgzipTaffyAdapter'].map(r => (React.createElement(FormControlLabel, { value: r, control: React.createElement(Radio, null), checked: fileTypeChoice === r, label: r }))))),
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} }, ['BigMafAdapter', 'MafTabixAdapter', 'BgzipTaffyAdapter'].map(r => (React.createElement(FormControlLabel, { key: r, value: r, control: React.createElement(Radio, null), checked: fileTypeChoice === r, label: r }))))),
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fileTypeChoice === 'BigMafAdapter' ? (React.createElement(FileSelector, { location: loc, name: "Path to bigMaf", rootModel: rootModel, setLocation: arg => {
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setLoc(arg);
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} })) : fileTypeChoice === 'MafTabixAdapter' ? (React.createElement(React.Fragment, null,
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@@ -44,7 +44,7 @@ export default function MultiMAFWidget({ model }) {
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React.createElement(FormLabel, null, "Index type"),
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React.createElement(RadioGroup, { value: fileTypeChoice, onChange: event => {
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setIndexTypeChoice(event.target.value);
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} }, ['TBI', 'CSI'].map(r => (React.createElement(FormControlLabel, { value: r, control: React.createElement(Radio, null), checked:
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} }, ['TBI', 'CSI'].map(r => (React.createElement(FormControlLabel, { key: r, value: r, control: React.createElement(Radio, null), checked: indexTypeChoice === r, label: r }))))),
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React.createElement(FileSelector, { location: loc, name: "Path to MAF tabix", rootModel: rootModel, setLocation: arg => {
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setLoc(arg);
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} }),
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@@ -1 +1 @@
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|
-
{"version":3,"file":"AddTrackWorkflow.js","sourceRoot":"","sources":["../../src/MafAddTrackWorkflow/AddTrackWorkflow.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAEL,UAAU,EACV,yBAAyB,EACzB,sBAAsB,GACvB,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EACL,MAAM,EACN,WAAW,EACX,gBAAgB,EAChB,SAAS,EACT,KAAK,EACL,KAAK,EACL,UAAU,EACV,SAAS,GACV,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,KAAK,EAAE,MAAM;KACd;IACD,KAAK,EAAE;QACL,MAAM,EAAE,KAAK,CAAC,OAAO,EAAE;QACvB,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE;KACzB;IACD,MAAM,EAAE;QACN,SAAS,EAAE,EAAE;QACb,YAAY,EAAE,GAAG;QACjB,OAAO,EAAE,OAAO;KACjB;CACF,CAAC,CAAC,CAAA;AAQH,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,EAAE,KAAK,EAA4B;IACxE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAC1C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,EAAgB,CAAA;IAC9C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAgB,CAAA;IAClD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,CAAC,WAAW,CAAC,CAAA;IACvD,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GACvC,QAAQ,CAAqB,eAAe,CAAC,CAAA;IAC/C,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GACzC,QAAQ,CAAmB,KAAK,CAAC,CAAA;IAEnC,MAAM,SAAS,GAAG,OAAO,CAAM,KAAK,CAAC,CAAA;IACrC,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,oBAAC,KAAK;YACH,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,WAAW;gBACV,oBAAC,SAAS,oBAAsB;gBAChC,oBAAC,UAAU,IACT,KAAK,EAAE,cAAc,EACrB,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,iBAAiB,CAAC,KAAK,CAAC,MAAM,CAAC,KAA2B,CAAC,CAAA;oBAC7D,CAAC,IAEA,CAAC,eAAe,EAAE,iBAAiB,EAAE,mBAAmB,CAAC,CAAC,GAAG,CAC5D,CAAC,CAAC,EAAE,CAAC,CACH,oBAAC,gBAAgB,IACf,KAAK,EAAE,CAAC,EACR,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,OAAO,EAAE,cAAc,KAAK,CAAC,EAC7B,KAAK,EAAE,CAAC,GACR,CACH,CACF,CACU,CACD;YACb,cAAc,KAAK,eAAe,CAAC,CAAC,CAAC,CACpC,oBAAC,YAAY,IACX,QAAQ,EAAE,GAAG,EACb,IAAI,EAAC,gBAAgB,EACrB,SAAS,EAAE,SAAS,EACpB,WAAW,EAAE,GAAG,CAAC,EAAE;oBACjB,MAAM,CAAC,GAAG,CAAC,CAAA;gBACb,CAAC,GACD,CACH,CAAC,CAAC,CAAC,cAAc,KAAK,iBAAiB,CAAC,CAAC,CAAC,CACzC;gBACE,oBAAC,WAAW;oBACV,oBAAC,SAAS,qBAAuB;oBACjC,oBAAC,UAAU,IACT,KAAK,EAAE,cAAc,EACrB,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,kBAAkB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAyB,CAAC,CAAA;wBAC5D,CAAC,IAEA,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CACvB,oBAAC,gBAAgB,IACf,KAAK,EAAE,CAAC,EACR,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,OAAO,EAAE,
|
|
1
|
+
{"version":3,"file":"AddTrackWorkflow.js","sourceRoot":"","sources":["../../src/MafAddTrackWorkflow/AddTrackWorkflow.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAEL,UAAU,EACV,yBAAyB,EACzB,sBAAsB,GACvB,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EACL,MAAM,EACN,WAAW,EACX,gBAAgB,EAChB,SAAS,EACT,KAAK,EACL,KAAK,EACL,UAAU,EACV,SAAS,GACV,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,KAAK,EAAE,MAAM;KACd;IACD,KAAK,EAAE;QACL,MAAM,EAAE,KAAK,CAAC,OAAO,EAAE;QACvB,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE;KACzB;IACD,MAAM,EAAE;QACN,SAAS,EAAE,EAAE;QACb,YAAY,EAAE,GAAG;QACjB,OAAO,EAAE,OAAO;KACjB;CACF,CAAC,CAAC,CAAA;AAQH,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,EAAE,KAAK,EAA4B;IACxE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAC1C,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,EAAgB,CAAA;IAC9C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAgB,CAAA;IAClD,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,CAAC,WAAW,CAAC,CAAA;IACvD,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GACvC,QAAQ,CAAqB,eAAe,CAAC,CAAA;IAC/C,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GACzC,QAAQ,CAAmB,KAAK,CAAC,CAAA;IAEnC,MAAM,SAAS,GAAG,OAAO,CAAM,KAAK,CAAC,CAAA;IACrC,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,oBAAC,KAAK;YACH,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC9C,oBAAC,WAAW;gBACV,oBAAC,SAAS,oBAAsB;gBAChC,oBAAC,UAAU,IACT,KAAK,EAAE,cAAc,EACrB,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,iBAAiB,CAAC,KAAK,CAAC,MAAM,CAAC,KAA2B,CAAC,CAAA;oBAC7D,CAAC,IAEA,CAAC,eAAe,EAAE,iBAAiB,EAAE,mBAAmB,CAAC,CAAC,GAAG,CAC5D,CAAC,CAAC,EAAE,CAAC,CACH,oBAAC,gBAAgB,IACf,GAAG,EAAE,CAAC,EACN,KAAK,EAAE,CAAC,EACR,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,OAAO,EAAE,cAAc,KAAK,CAAC,EAC7B,KAAK,EAAE,CAAC,GACR,CACH,CACF,CACU,CACD;YACb,cAAc,KAAK,eAAe,CAAC,CAAC,CAAC,CACpC,oBAAC,YAAY,IACX,QAAQ,EAAE,GAAG,EACb,IAAI,EAAC,gBAAgB,EACrB,SAAS,EAAE,SAAS,EACpB,WAAW,EAAE,GAAG,CAAC,EAAE;oBACjB,MAAM,CAAC,GAAG,CAAC,CAAA;gBACb,CAAC,GACD,CACH,CAAC,CAAC,CAAC,cAAc,KAAK,iBAAiB,CAAC,CAAC,CAAC,CACzC;gBACE,oBAAC,WAAW;oBACV,oBAAC,SAAS,qBAAuB;oBACjC,oBAAC,UAAU,IACT,KAAK,EAAE,cAAc,EACrB,QAAQ,EAAE,KAAK,CAAC,EAAE;4BAChB,kBAAkB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAyB,CAAC,CAAA;wBAC5D,CAAC,IAEA,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CACvB,oBAAC,gBAAgB,IACf,GAAG,EAAE,CAAC,EACN,KAAK,EAAE,CAAC,EACR,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,OAAO,EAAE,eAAe,KAAK,CAAC,EAC9B,KAAK,EAAE,CAAC,GACR,CACH,CAAC,CACS,CACD;gBACd,oBAAC,YAAY,IACX,QAAQ,EAAE,GAAG,EACb,IAAI,EAAC,mBAAmB,EACxB,SAAS,EAAE,SAAS,EACpB,WAAW,EAAE,GAAG,CAAC,EAAE;wBACjB,MAAM,CAAC,GAAG,CAAC,CAAA;oBACb,CAAC,GACD;gBACF,oBAAC,YAAY,IACX,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAC,yBAAyB,EAC9B,SAAS,EAAE,SAAS,EACpB,WAAW,EAAE,GAAG,CAAC,EAAE;wBACjB,WAAW,CAAC,GAAG,CAAC,CAAA;oBAClB,CAAC,GACD,CACD,CACJ,CAAC,CAAC,CAAC,CACF;gBACE,oBAAC,YAAY,IACX,QAAQ,EAAE,GAAG,EACb,IAAI,EAAC,+BAA+B,EACpC,SAAS,EAAE,SAAS,EACpB,WAAW,EAAE,GAAG,CAAC,EAAE;wBACjB,MAAM,CAAC,GAAG,CAAC,CAAA;oBACb,CAAC,GACD;gBACF,oBAAC,YAAY,IACX,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAC,gCAAgC,EACrC,SAAS,EAAE,SAAS,EACpB,WAAW,EAAE,GAAG,CAAC,EAAE;wBACjB,WAAW,CAAC,GAAG,CAAC,CAAA;oBAClB,CAAC,GACD,CACD,CACJ,CACK;QACR;YACE,oBAAC,YAAY,IACX,QAAQ,EAAE,KAAK,EACf,IAAI,EAAC,2BAA2B,EAChC,SAAS,EAAE,SAAS,EACpB,WAAW,EAAE,GAAG,CAAC,EAAE;oBACjB,QAAQ,CAAC,GAAG,CAAC,CAAA;gBACf,CAAC,GACD;YACF,oBAAC,SAAS,IACR,SAAS,QACT,IAAI,EAAE,EAAE,EACR,KAAK,EAAE,OAAO,EACd,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBAChC,CAAC,EACD,UAAU,EAAC,0DAA0D,EACrE,WAAW,EACT,wFAAwF,EAE1F,OAAO,EAAC,UAAU,EAClB,SAAS,SACT,CACE;QAEN,oBAAC,SAAS,IACR,KAAK,EAAE,SAAS,EAChB,UAAU,EAAC,YAAY,EACvB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,YAAY,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YAClC,CAAC,GACD;QACF,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI,CAAC;oBACH,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;oBACjC,IAAI,WAAW,GAAG,EAAc,CAAA;oBAChC,IAAI,CAAC;wBACH,WAAW,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;oBACnC,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,WAAW,GAAG,OAAO,CAAC,KAAK,CAAC,YAAY,CAAC,CAAA;oBAC3C,CAAC;oBAED,MAAM,OAAO,GAAG;wBACd,GAAG,SAAS,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE;wBAC/D,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,eAAe;qBACzC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;oBAEV,IAAI,sBAAsB,CAAC,OAAO,CAAC,EAAE,CAAC;wBACpC,OAAO,CAAC,YAAY,CAAC;4BACnB,OAAO;4BACP,IAAI,EAAE,UAAU;4BAChB,IAAI,EAAE,SAAS;4BACf,aAAa,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC;4BAC/B,OAAO,EACL,cAAc,KAAK,eAAe;gCAChC,CAAC,CAAC;oCACE,IAAI,EAAE,cAAc;oCACpB,cAAc,EAAE,GAAG;oCACnB,OAAO,EAAE,WAAW;oCACpB,UAAU,EAAE,KAAK;iCAClB;gCACH,CAAC,CAAC,cAAc,KAAK,iBAAiB;oCACpC,CAAC,CAAC;wCACE,IAAI,EAAE,cAAc;wCACpB,aAAa,EAAE,GAAG;wCAClB,UAAU,EAAE,KAAK;wCACjB,KAAK,EAAE;4CACL,SAAS,EAAE,eAAe;4CAC1B,QAAQ,EAAE,QAAQ;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|
|
@@ -48,9 +48,22 @@ export default class MafTabixAdapter extends BaseFeatureDataAdapter {
|
|
|
48
48
|
const alns = data.map(elt => elt.split(':')[5]);
|
|
49
49
|
for (const [j, elt] of data.entries()) {
|
|
50
50
|
const ad = elt.split(':');
|
|
51
|
-
const
|
|
52
|
-
const
|
|
53
|
-
|
|
51
|
+
const ag = ad[0].split('.');
|
|
52
|
+
const [n1, n2 = '', ...rest] = ag;
|
|
53
|
+
let org;
|
|
54
|
+
let last = '';
|
|
55
|
+
if (ag.length === 2) {
|
|
56
|
+
org = n1;
|
|
57
|
+
last = n2;
|
|
58
|
+
}
|
|
59
|
+
else if (!Number.isNaN(+n2)) {
|
|
60
|
+
org = `${n1}.${n2}`;
|
|
61
|
+
last = rest.join('.');
|
|
62
|
+
}
|
|
63
|
+
else {
|
|
64
|
+
org = n1;
|
|
65
|
+
last = [n2, ...rest].join('.');
|
|
66
|
+
}
|
|
54
67
|
if (org) {
|
|
55
68
|
alignments[org] = {
|
|
56
69
|
chr: last,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"MafTabixAdapter.js","sourceRoot":"","sources":["../../src/MafTabixAdapter/MafTabixAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAChF,OAAO,EAAmB,aAAa,EAAE,MAAM,oBAAoB,CAAA;AACnE,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAA;AAC7C,OAAO,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAE9C,OAAO,WAAW,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AAWnC,MAAM,CAAC,OAAO,OAAO,eAAgB,SAAQ,sBAAsB;IAC1D,MAAM,CAA+C;IAE5D,KAAK,CAAC,KAAK;QACT,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAA;QAC1B,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;QAC/C,CAAC;QACD,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC;YACvC,GAAG,WAAW,CAAC,MAAM,CAAC;YACtB,IAAI,EAAE,iBAAiB;SACxB,CAAC,CAAA;QACF,OAAO;YACL,OAAO,EAAE,OAAO,CAAC,WAAqC;SACvD,CAAA;IACH,CAAC;IACD,KAAK,CAAC,QAAQ;QACZ,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;YACjB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBAC9C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAED,KAAK,CAAC,SAAS;QACb,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,SAAS,EAAE,CAAA;IAC5B,CAAC;IAED,WAAW,CAAC,KAAa;QACvB,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;YACtC,MAAM,QAAQ,GAAG,MAAM,cAAc,CACnC,OAAO,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAC3C,CAAA;YAED,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;gBAC/B,MAAM,IAAI,GAAI,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAY,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;gBACzD,MAAM,UAAU,GAAG,EAAoC,CAAA;gBACvD,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;gBAE/C,KAAK,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,IAAI,CAAC,OAAO,EAAE,EAAE,CAAC;oBACtC,MAAM,EAAE,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;oBACzB,MAAM,
|
|
1
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+
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