jbrowse-plugin-mafviewer 1.1.1 → 1.1.2

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Files changed (6) hide show
  1. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js +11 -4
  2. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js.map +1 -1
  3. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +2 -2
  4. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +2 -2
  5. package/package.json +1 -1
  6. package/src/BgzipTaffyAdapter/BgzipTaffyAdapter.ts +12 -4
package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js CHANGED
@@ -170,17 +170,24 @@ export default class BgzipTaffyAdapter extends BaseFeatureDataAdapter {
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  if (records) {
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  let firstEntry = records[0];
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  let nextEntry;
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+ // two pass:
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+ // first pass: find first block greater than query start, then -1 from
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+ // that
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  for (let i = 0; i < records.length; i++) {
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  if (records[i].chrStart >= query.start) {
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- // we use i-1 for firstEntry because the current record is "greater
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- // than the query start", we go backwards one record to make sure to
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- // cover up until the query start. we use i+1 to ensure we get at
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- // least one block in the case that i=0
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  firstEntry = records[Math.max(i - 1, 0)];
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+ break;
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+ }
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+ }
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+ // second pass: find first block where query end less than record start,
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+ // and +1 from that
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+ for (let i = 0; i < records.length; i++) {
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+ if (query.end <= records[i].chrStart) {
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  nextEntry = records[i + 1];
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  break;
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  }
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  }
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+ nextEntry = nextEntry ?? records.at(-1);
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  if (firstEntry && nextEntry) {
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  const response = await file.read(nextEntry.virtualOffset.blockPosition -
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  firstEntry.virtualOffset.blockPosition, firstEntry.virtualOffset.blockPosition);
package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js.map CHANGED
@@ -1 +1 @@
1
- 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