jbrowse-plugin-mafviewer 1.0.6 → 1.1.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (154) hide show
  1. package/README.md +71 -22
  2. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.d.ts +20 -0
  3. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js +197 -0
  4. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js.map +1 -0
  5. package/dist/BgzipTaffyAdapter/configSchema.d.ts +44 -0
  6. package/dist/BgzipTaffyAdapter/configSchema.js +53 -0
  7. package/dist/BgzipTaffyAdapter/configSchema.js.map +1 -0
  8. package/dist/BgzipTaffyAdapter/index.d.ts +2 -0
  9. package/dist/BgzipTaffyAdapter/index.js +11 -0
  10. package/dist/BgzipTaffyAdapter/index.js.map +1 -0
  11. package/dist/BgzipTaffyAdapter/rowInstructions.d.ts +35 -0
  12. package/dist/BgzipTaffyAdapter/rowInstructions.js +55 -0
  13. package/dist/BgzipTaffyAdapter/rowInstructions.js.map +1 -0
  14. package/dist/BgzipTaffyAdapter/types.d.ts +13 -0
  15. package/dist/BgzipTaffyAdapter/types.js +2 -0
  16. package/dist/BgzipTaffyAdapter/types.js.map +1 -0
  17. package/dist/BgzipTaffyAdapter/virtualOffset.d.ts +8 -0
  18. package/dist/BgzipTaffyAdapter/virtualOffset.js +23 -0
  19. package/dist/BgzipTaffyAdapter/virtualOffset.js.map +1 -0
  20. package/dist/BigMafAdapter/BigMafAdapter.d.ts +17 -0
  21. package/dist/BigMafAdapter/BigMafAdapter.js +92 -0
  22. package/dist/BigMafAdapter/BigMafAdapter.js.map +1 -0
  23. package/dist/BigMafAdapter/configSchema.d.ts +32 -0
  24. package/dist/BigMafAdapter/configSchema.js +39 -0
  25. package/dist/BigMafAdapter/configSchema.js.map +1 -0
  26. package/dist/BigMafAdapter/index.d.ts +2 -0
  27. package/dist/BigMafAdapter/index.js +11 -0
  28. package/dist/BigMafAdapter/index.js.map +1 -0
  29. package/dist/LinearMafDisplay/components/ColorLegend.d.ts +8 -0
  30. package/dist/LinearMafDisplay/components/ColorLegend.js +19 -0
  31. package/dist/LinearMafDisplay/components/ColorLegend.js.map +1 -0
  32. package/dist/LinearMafDisplay/components/ReactComponent.d.ts +6 -0
  33. package/dist/LinearMafDisplay/components/ReactComponent.js +50 -0
  34. package/dist/LinearMafDisplay/components/ReactComponent.js.map +1 -0
  35. package/dist/LinearMafDisplay/components/RectBg.d.ts +9 -0
  36. package/dist/LinearMafDisplay/components/RectBg.js +7 -0
  37. package/dist/LinearMafDisplay/components/RectBg.js.map +1 -0
  38. package/dist/LinearMafDisplay/components/SetRowHeight.d.ts +11 -0
  39. package/dist/LinearMafDisplay/components/SetRowHeight.js +36 -0
  40. package/dist/LinearMafDisplay/components/SetRowHeight.js.map +1 -0
  41. package/dist/LinearMafDisplay/components/SvgWrapper.d.ts +8 -0
  42. package/dist/LinearMafDisplay/components/SvgWrapper.js +21 -0
  43. package/dist/LinearMafDisplay/components/SvgWrapper.js.map +1 -0
  44. package/dist/LinearMafDisplay/components/Tree.d.ts +5 -0
  45. package/dist/LinearMafDisplay/components/Tree.js +22 -0
  46. package/dist/LinearMafDisplay/components/Tree.js.map +1 -0
  47. package/dist/LinearMafDisplay/components/YScaleBars.d.ts +8 -0
  48. package/dist/LinearMafDisplay/components/YScaleBars.js +20 -0
  49. package/dist/LinearMafDisplay/components/YScaleBars.js.map +1 -0
  50. package/dist/LinearMafDisplay/components/util.d.ts +1 -0
  51. package/dist/LinearMafDisplay/components/util.js +8 -0
  52. package/dist/LinearMafDisplay/components/util.js.map +1 -0
  53. package/dist/LinearMafDisplay/configSchema.d.ts +34 -0
  54. package/dist/LinearMafDisplay/configSchema.js +15 -0
  55. package/dist/LinearMafDisplay/configSchema.js.map +1 -0
  56. package/dist/LinearMafDisplay/index.d.ts +2 -0
  57. package/dist/LinearMafDisplay/index.js +20 -0
  58. package/dist/LinearMafDisplay/index.js.map +1 -0
  59. package/dist/LinearMafDisplay/renderSvg.d.ts +4 -0
  60. package/dist/LinearMafDisplay/renderSvg.js +18 -0
  61. package/dist/LinearMafDisplay/renderSvg.js.map +1 -0
  62. package/dist/LinearMafDisplay/stateModel.d.ts +426 -0
  63. package/dist/LinearMafDisplay/stateModel.js +276 -0
  64. package/dist/LinearMafDisplay/stateModel.js.map +1 -0
  65. package/dist/LinearMafDisplay/types.d.ts +17 -0
  66. package/dist/LinearMafDisplay/types.js +16 -0
  67. package/dist/LinearMafDisplay/types.js.map +1 -0
  68. package/dist/LinearMafRenderer/LinearMafRenderer.d.ts +45 -0
  69. package/dist/LinearMafRenderer/LinearMafRenderer.js +183 -0
  70. package/dist/LinearMafRenderer/LinearMafRenderer.js.map +1 -0
  71. package/dist/LinearMafRenderer/components/ReactComponent.d.ts +6 -0
  72. package/dist/LinearMafRenderer/components/ReactComponent.js +8 -0
  73. package/dist/LinearMafRenderer/components/ReactComponent.js.map +1 -0
  74. package/dist/LinearMafRenderer/configSchema.d.ts +2 -0
  75. package/dist/LinearMafRenderer/configSchema.js +13 -0
  76. package/dist/LinearMafRenderer/configSchema.js.map +1 -0
  77. package/dist/LinearMafRenderer/index.d.ts +2 -0
  78. package/dist/LinearMafRenderer/index.js +12 -0
  79. package/dist/LinearMafRenderer/index.js.map +1 -0
  80. package/dist/LinearMafRenderer/util.d.ts +10 -0
  81. package/dist/LinearMafRenderer/util.js +16 -0
  82. package/dist/LinearMafRenderer/util.js.map +1 -0
  83. package/dist/MafAddTrackWorkflow/AddTrackWorkflow.d.ts +5 -0
  84. package/dist/MafAddTrackWorkflow/AddTrackWorkflow.js +128 -0
  85. package/dist/MafAddTrackWorkflow/AddTrackWorkflow.js.map +1 -0
  86. package/dist/MafAddTrackWorkflow/index.d.ts +2 -0
  87. package/dist/MafAddTrackWorkflow/index.js +12 -0
  88. package/dist/MafAddTrackWorkflow/index.js.map +1 -0
  89. package/dist/MafRPC/index.d.ts +16 -0
  90. package/dist/MafRPC/index.js +19 -0
  91. package/dist/MafRPC/index.js.map +1 -0
  92. package/dist/MafTabixAdapter/MafTabixAdapter.d.ts +25 -0
  93. package/dist/MafTabixAdapter/MafTabixAdapter.js +95 -0
  94. package/dist/MafTabixAdapter/MafTabixAdapter.js.map +1 -0
  95. package/dist/MafTabixAdapter/configSchema.d.ts +50 -0
  96. package/dist/MafTabixAdapter/configSchema.js +56 -0
  97. package/dist/MafTabixAdapter/configSchema.js.map +1 -0
  98. package/dist/MafTabixAdapter/index.d.ts +2 -0
  99. package/dist/MafTabixAdapter/index.js +11 -0
  100. package/dist/MafTabixAdapter/index.js.map +1 -0
  101. package/dist/MafTrack/configSchema.d.ts +79 -0
  102. package/dist/MafTrack/configSchema.js +15 -0
  103. package/dist/MafTrack/configSchema.js.map +1 -0
  104. package/dist/MafTrack/index.d.ts +2 -0
  105. package/dist/MafTrack/index.js +14 -0
  106. package/dist/MafTrack/index.js.map +1 -0
  107. package/dist/index.d.ts +8 -0
  108. package/dist/index.js +26 -0
  109. package/dist/index.js.map +1 -0
  110. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +65 -1
  111. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +7 -1
  112. package/dist/parseNewick.d.ts +60 -0
  113. package/dist/parseNewick.js +95 -0
  114. package/dist/parseNewick.js.map +1 -0
  115. package/dist/util.d.ts +9 -0
  116. package/dist/util.js +9 -0
  117. package/dist/util.js.map +1 -0
  118. package/package.json +37 -41
  119. package/src/BgzipTaffyAdapter/BgzipTaffyAdapter.ts +227 -0
  120. package/src/BgzipTaffyAdapter/configSchema.ts +59 -0
  121. package/src/BgzipTaffyAdapter/index.ts +16 -0
  122. package/src/BgzipTaffyAdapter/rowInstructions.ts +91 -0
  123. package/src/BgzipTaffyAdapter/types.ts +16 -0
  124. package/src/BgzipTaffyAdapter/virtualOffset.ts +29 -0
  125. package/src/BigMafAdapter/BigMafAdapter.ts +12 -13
  126. package/src/BigMafAdapter/configSchema.ts +11 -0
  127. package/src/BigMafAdapter/index.ts +2 -1
  128. package/src/LinearMafDisplay/components/ColorLegend.tsx +38 -27
  129. package/src/LinearMafDisplay/components/ReactComponent.tsx +68 -3
  130. package/src/LinearMafDisplay/components/SetRowHeight.tsx +15 -8
  131. package/src/LinearMafDisplay/components/SvgWrapper.tsx +39 -0
  132. package/src/LinearMafDisplay/components/Tree.tsx +33 -0
  133. package/src/LinearMafDisplay/components/YScaleBars.tsx +11 -38
  134. package/src/LinearMafDisplay/components/util.ts +7 -0
  135. package/src/LinearMafDisplay/index.ts +2 -1
  136. package/src/LinearMafDisplay/renderSvg.tsx +2 -1
  137. package/src/LinearMafDisplay/stateModel.ts +169 -18
  138. package/src/LinearMafDisplay/types.ts +41 -0
  139. package/src/LinearMafRenderer/LinearMafRenderer.ts +51 -44
  140. package/src/LinearMafRenderer/components/ReactComponent.tsx +2 -1
  141. package/src/LinearMafRenderer/index.ts +2 -1
  142. package/src/LinearMafRenderer/util.ts +20 -0
  143. package/src/MafAddTrackWorkflow/AddTrackWorkflow.tsx +133 -51
  144. package/src/MafRPC/index.ts +39 -0
  145. package/src/MafTabixAdapter/MafTabixAdapter.ts +33 -27
  146. package/src/MafTabixAdapter/configSchema.ts +17 -1
  147. package/src/MafTabixAdapter/index.ts +2 -1
  148. package/src/MafTrack/index.ts +1 -0
  149. package/src/index.ts +6 -2
  150. package/src/parseNewick.ts +94 -0
  151. package/src/util.ts +11 -0
  152. package/LICENSE +0 -201
  153. package/dist/jbrowse-plugin-mafviewer.umd.development.js +0 -1439
  154. package/dist/jbrowse-plugin-mafviewer.umd.development.js.map +0 -1

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