jbrowse-plugin-gwas 2.0.6 → 2.1.1

package/dist/LinearManhattanDisplay/components/AddFiltersDialog.d.ts

@@ -0,0 +1,10 @@
+import React from 'react';
+declare const AddFiltersDialog: ({ model, handleClose, }: {
+    model: {
+        jexlFilters?: string[];
+        activeFilters: string[];
+        setJexlFilters: (arg?: string[]) => void;
+    };
+    handleClose: () => void;
+}) => React.JSX.Element;
+export default AddFiltersDialog;

package/dist/LinearManhattanDisplay/components/AddFiltersDialog.js

@@ -0,0 +1,78 @@
+import React, { useEffect, useState } from 'react';
+import { Dialog } from '@jbrowse/core/ui';
+import { stringToJexlExpression } from '@jbrowse/core/util/jexlStrings';
+import { Button, DialogActions, DialogContent, TextField } from '@mui/material';
+import { observer } from 'mobx-react';
+import { makeStyles } from 'tss-react/mui';
+const useStyles = makeStyles()({
+    dialogContent: {
+        width: '80em',
+    },
+    textAreaFont: {
+        fontFamily: 'Courier New',
+    },
+    error: {
+        color: 'red',
+        fontSize: '0.8em',
+    },
+});
+function checkJexl(code) {
+    stringToJexlExpression(code);
+}
+const AddFiltersDialog = observer(function ({ model, handleClose, }) {
+    const { classes } = useStyles();
+    const { activeFilters } = model;
+    const [data, setData] = useState(activeFilters.join('\n'));
+    const [error, setError] = useState();
+    useEffect(() => {
+        try {
+            data
+                .split('\n')
+                .map(line => line.trim())
+                .filter(line => !!line)
+                .map(line => {
+                checkJexl(line.trim());
+            });
+            setError(undefined);
+        }
+        catch (e) {
+            console.error(e);
+            setError(e);
+        }
+    }, [data]);
+    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose, title: "Add track filters" },
+        React.createElement(DialogContent, null,
+            React.createElement("div", null,
+                "Add filters, in jexl format, one per line, starting with the string jexl:. Examples:",
+                ' ',
+                React.createElement("ul", null,
+                    React.createElement("li", null,
+                        React.createElement("code", null, "jexl:get(feature,'name')=='BRCA1'"),
+                        " - show only feature where the name attribute is BRCA1"),
+                    React.createElement("li", null,
+                        React.createElement("code", null, "jexl:get(feature,'type')=='gene'"),
+                        " - show only gene type features in a GFF that has many other feature types"),
+                    React.createElement("li", null,
+                        React.createElement("code", null, "jexl:get(feature,'score') > 400"),
+                        " - show only features that have a score greater than 400"))),
+            error ? React.createElement("p", { className: classes.error }, `${error}`) : null,
+            React.createElement(TextField, { variant: "outlined", multiline: true, minRows: 5, maxRows: 10, className: classes.dialogContent, fullWidth: true, value: data, onChange: event => {
+                    setData(event.target.value);
+                }, slotProps: {
+                    input: {
+                        classes: {
+                            input: classes.textAreaFont,
+                        },
+                    },
+                } })),
+        React.createElement(DialogActions, null,
+            React.createElement(Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !!error, onClick: () => {
+                    model.setJexlFilters(data.split('\n'));
+                    handleClose();
+                } }, "Submit"),
+            React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => {
+                    handleClose();
+                } }, "Cancel"))));
+});
+export default AddFiltersDialog;
+//# sourceMappingURL=AddFiltersDialog.js.map

package/dist/LinearManhattanDisplay/components/AddFiltersDialog.js.map

@@ -0,0 +1 @@
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package/dist/LinearManhattanDisplay/components/TooltipComponent.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"TooltipComponent.js","sourceRoot":"","sources":["../../../src/LinearManhattanDisplay/components/TooltipComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AAChD,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAerC,MAAM,eAAe,GAAG,KAAK,CAAC,UAAU,CACtC,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE,GAAG;IAC/C,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG;QACX,oBAAC,aAAa,IAAC,IAAI,EAAE,OAAO,CAAC,KAAK,EAAE,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,GAAI,CAC7D,CACP,CAAA;AACH,CAAC,CACF,CAAA;AAID,MAAM,gBAAgB,GAAG,QAAQ,CAAC,UAAU,KAO3C;IACC,OAAO,oBAAC,OAAO,IAAC,eAAe,EAAE,eAAe,KAAM,KAAK,GAAI,CAAA;AACjE,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}

package/dist/LinearManhattanDisplay/stateModelFactory.d.ts

@@ -1,6 +1,8 @@
+import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
 import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import type { Feature } from '@jbrowse/core/util';
-export declare function stateModelFactory(pluginManager: PluginManager, configSchema: any): import("mobx-state-tree").IModelType<{
+export declare function stateModelFactory(pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -35,7 +37,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
                 status?: string;
                 reactElement?: React.ReactElement;
             };
-        }) => import("react").JSX.Element | undefined;
+        }) => import("react/jsx-runtime").JSX.Element | undefined;
         renderProps: any;
     } & {
         doReload(): void;
@@ -93,11 +95,20 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
         max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
         min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-    configuration: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+    configuration: AnyConfigurationSchemaType;
 } & {
     type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
+    invertedSetting: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
 } & {
     type: import("mobx-state-tree").ISimpleType<"LinearManhattanDisplay">;
+    /**
+     * #property
+     */
+    configuration: AnyConfigurationSchemaType;
+    /**
+     * #property
+     */
+    jexlFilters: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>>;
 }, {
     rendererTypeName: string;
     error: unknown;
@@ -189,13 +200,13 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
 } & {
     readonly statsReadyAndRegionNotTooLarge: boolean;
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
 } & {
     featureIdUnderMouse: undefined | string;
     contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
 } & {
-    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-    readonly blockType: "dynamicBlocks" | "staticBlocks";
+    readonly DisplayMessageComponent: undefined | React.FC<any>;
+    readonly blockType: "staticBlocks" | "dynamicBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;
@@ -210,7 +221,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
 } & {
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
-    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    selectFeature(feature: import("@jbrowse/core/util").Feature): Promise<void>;
     navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature?: string): void;
@@ -222,7 +233,7 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     renderProps(): any;
 } & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
     afterAttach(): void;
 } & {
     message: undefined | string;
@@ -256,11 +267,11 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     setCrossHatches(cross: boolean): void;
 } & {
     readonly adapterTypeName: any;
-    readonly rendererTypeNameSimple: any;
+    readonly rendererTypeNameSimple: string;
     readonly filters: undefined;
-    readonly scaleType: any;
-    readonly maxScore: any;
-    readonly minScore: any;
+    readonly scaleType: string;
+    readonly maxScore: number;
+    readonly minScore: number;
 } & {
     readonly adapterCapabilities: string[];
     readonly rendererConfig: {
@@ -271,10 +282,10 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
                 [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
-    readonly autoscaleType: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
+    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
+    readonly autoscaleType: string;
 } & {
     readonly domain: number[] | undefined;
 } & {
@@ -287,9 +298,9 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
             scoreMin: number;
             scoreMax: number;
         } | undefined;
-        autoscaleType: any;
-        scaleType: any;
-        inverted: any;
+        autoscaleType: string;
+        scaleType: string;
+        inverted: boolean;
     };
     readonly canHaveFill: boolean;
     readonly displayCrossHatchesSetting: boolean;
@@ -319,10 +330,14 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     })[];
 } & {
     reload(): Promise<void>;
+} & {
+    setInverted(arg: boolean): void;
 } & {
     readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
     readonly rendererTypeName: string;
     readonly quantitativeStatsRelevantToCurrentZoom: boolean;
+    readonly graphType: boolean;
+    readonly inverted: boolean;
 } & {
     adapterProps(): any;
     readonly ticks: {
@@ -333,12 +348,14 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     } | undefined;
 } & {
     renderProps(): any;
-    readonly needsScalebar: boolean;
     readonly fillSetting: 2 | 1 | 0;
     readonly quantitativeStatsReady: boolean;
 } & {
     trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
         label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         subMenu: ({
             label: string;
             subMenu: {
@@ -363,6 +380,13 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
         type?: undefined;
         checked?: undefined;
         onClick?: undefined;
+    } | {
+        label: string;
+        type: string;
+        checked: boolean;
+        onClick: () => void;
+        icon?: undefined;
+        subMenu?: undefined;
     } | {
         label: string;
         subMenu: {
@@ -371,11 +395,24 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
             checked: boolean;
             onClick: () => void;
         }[];
+        icon?: undefined;
         type?: undefined;
         checked?: undefined;
         onClick?: undefined;
+    } | {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+        subMenu?: undefined;
+        type?: undefined;
+        checked?: undefined;
     } | {
         type: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
         label: string;
         checked: boolean;
         onClick: () => void;
@@ -383,19 +420,44 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
     })[];
 } & {
     afterAttach(): void;
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
 } & {
+    /**
+     * #getter
+     */
     readonly TooltipComponent: (props: {
-        model: import("./TooltipComponent").Model;
+        model: import("./components/TooltipComponent").Model;
         height: number;
         offsetMouseCoord: [number, number];
         clientMouseCoord: [number, number];
         clientRect?: DOMRect;
         TooltipContents?: import("@jbrowse/plugin-wiggle").TooltipContentsComponent;
     }) => import("react").JSX.Element;
+    /**
+     * #getter
+     */
     readonly rendererTypeName: string;
+    /**
+     * #getter
+     * older way of showing y-scalebar
+     */
     readonly needsScalebar: boolean;
+    /**
+     * #getter
+     * newer way of showing y-scalebar
+     */
+    readonly graphType: boolean;
+    /**
+     * #getter
+     * never too large!
+     */
     readonly regionTooLarge: boolean;
+    /**
+     * #getter
+     * config jexlFilters are deferred evaluated so they are prepended with
+     * jexl at runtime rather than being stored with jexl in the config
+     */
+    readonly activeFilters: any;
 } & {
     /**
      * #action
@@ -404,5 +466,31 @@ export declare function stateModelFactory(pluginManager: PluginManager, configSc
      * model so listeners can detect a click
      */
     selectFeature(feature: Feature): void;
+    /**
+     * #action
+     */
+    setJexlFilters(f?: string[]): void;
+} & {
+    /**
+     * #method
+     */
+    renderProps(): {
+        config: {
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
+        filters: SerializableFilterChain;
+    };
+    /**
+     * #method
+     */
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export type LinearManhattanDisplayModel = ReturnType<typeof stateModelFactory>;

package/dist/LinearManhattanDisplay/stateModelFactory.js

@@ -1,26 +1,69 @@
+import { lazy } from 'react';
+import { ConfigurationReference, getConf } from '@jbrowse/core/configuration';
+import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
 import { getContainingTrack, getContainingView, getSession, isSelectionContainer, isSessionModelWithWidgets, } from '@jbrowse/core/util';
-import TooltipComponent from './TooltipComponent';
+import { cast, types } from 'mobx-state-tree';
+import TooltipComponent from './components/TooltipComponent';
+// lazies
+const AddFiltersDialog = lazy(() => import('./components/AddFiltersDialog'));
 export function stateModelFactory(pluginManager, configSchema) {
-    const { types } = pluginManager.lib['mobx-state-tree'];
     const WigglePlugin = pluginManager.getPlugin('WigglePlugin');
     const { linearWiggleDisplayModelFactory } = WigglePlugin.exports;
-    return types.compose('LinearManhattanDisplay', linearWiggleDisplayModelFactory(pluginManager, configSchema), types
-        .model({
+    return types
+        .compose('LinearManhattanDisplay', linearWiggleDisplayModelFactory(pluginManager, configSchema), types.model({
         type: types.literal('LinearManhattanDisplay'),
-    })
-        .views(() => ({
+        /**
+         * #property
+         */
+        configuration: ConfigurationReference(configSchema),
+        /**
+         * #property
+         */
+        jexlFilters: types.maybe(types.array(types.string)),
+    }))
+        .views(self => ({
+        /**
+         * #getter
+         */
         get TooltipComponent() {
             return TooltipComponent;
         },
+        /**
+         * #getter
+         */
         get rendererTypeName() {
             return 'LinearManhattanRenderer';
         },
+        /**
+         * #getter
+         * older way of showing y-scalebar
+         */
         get needsScalebar() {
             return true;
         },
+        /**
+         * #getter
+         * newer way of showing y-scalebar
+         */
+        get graphType() {
+            return true;
+        },
+        /**
+         * #getter
+         * never too large!
+         */
         get regionTooLarge() {
             return false;
         },
+        /**
+         * #getter
+         * config jexlFilters are deferred evaluated so they are prepended with
+         * jexl at runtime rather than being stored with jexl in the config
+         */
+        get activeFilters() {
+            var _a;
+            return ((_a = self.jexlFilters) !== null && _a !== void 0 ? _a : getConf(self, 'jexlFilters').map((r) => `jexl:${r}`));
+        },
     }))
         .actions(self => ({
         /**
@@ -43,6 +86,50 @@ export function stateModelFactory(pluginManager, configSchema) {
                 session.setSelection(feature);
             }
         },
-    })));
+        /**
+         * #action
+         */
+        setJexlFilters(f) {
+            self.jexlFilters = cast(f);
+        },
+    }))
+        .views(self => {
+        const { trackMenuItems: superTrackMenuItems, renderProps: superRenderProps, } = self;
+        return {
+            /**
+             * #method
+             */
+            renderProps() {
+                const superProps = superRenderProps();
+                return {
+                    ...superProps,
+                    config: self.rendererConfig,
+                    filters: new SerializableFilterChain({
+                        filters: self.activeFilters,
+                    }),
+                };
+            },
+            /**
+             * #method
+             */
+            trackMenuItems() {
+                return [
+                    ...superTrackMenuItems(),
+                    {
+                        label: 'Edit filters',
+                        onClick: () => {
+                            getSession(self).queueDialog(handleClose => [
+                                AddFiltersDialog,
+                                {
+                                    model: self,
+                                    handleClose,
+                                },
+                            ]);
+                        },
+                    },
+                ];
+            },
+        };
+    });
 }
 //# sourceMappingURL=stateModelFactory.js.map

package/dist/LinearManhattanDisplay/stateModelFactory.js.map

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package/dist/LinearManhattanRenderer/LinearManhattanRenderer.d.ts

@@ -1,5 +1,20 @@
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { Feature, Region } from '@jbrowse/core/util';
 import type PluginManager from '@jbrowse/core/PluginManager';
-export declare function checkStopToken(stopToken?: string): void;
+interface ManhattanProps {
+    features: Map<string, Feature>;
+    regions: Region[];
+    bpPerPx: number;
+    statusCallback?: (arg: string) => void;
+    config: AnyConfigurationModel;
+    scaleOpts: any;
+    height: number;
+    displayCrossHatches: boolean;
+    ticks: {
+        values: number[];
+    };
+    stopToken?: string;
+}
 export default function rendererFactory(pluginManager: PluginManager): {
     new (stuff: {
         name: string;
@@ -8,50 +23,51 @@ export default function rendererFactory(pluginManager: PluginManager): {
         configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
         pluginManager: PluginManager;
     }): {
-        draw(ctx: CanvasRenderingContext2D, props: any): Promise<{
+        draw(ctx: CanvasRenderingContext2D, props: ManhattanProps): Promise<{
             clickMap: any;
         }>;
         supportsSVG: boolean;
         render(renderProps: import("@jbrowse/plugin-wiggle/dist/WiggleBaseRenderer").RenderArgsDeserialized): Promise<{
-            features: Map<string, import("@jbrowse/core/util").Feature>;
+            features: Map<string, Feature>;
             height: number;
             width: number;
             containsNoTransferables: boolean;
-            canvasRecordedData: any;
-            reactElement?: import("react").ReactElement;
+            canvasRecordedData: Record<string, unknown>;
+            reactElement?: React.ReactElement;
             html?: string;
         } | {
-            features: Map<string, import("@jbrowse/core/util").Feature>;
+            features: Map<string, Feature>;
             height: number;
             width: number;
             containsNoTransferables: boolean;
-            reactElement: React.JSX.Element;
+            imageData: any;
+            reactElement?: React.ReactElement;
             html?: string;
         } | {
-            features: Map<string, import("@jbrowse/core/util").Feature>;
+            features: Map<string, Feature>;
             height: number;
             width: number;
             containsNoTransferables: boolean;
-            imageData: any;
-            reactElement?: import("react").ReactElement;
+            reactElement: React.ReactElement;
             html?: string;
         }>;
         serializeArgsInClient(args: import("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType").RenderArgs): import("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType").RenderArgsSerialized;
         deserializeResultsInClient(result: import("@jbrowse/plugin-wiggle/dist/WiggleBaseRenderer").ResultsSerialized, args: import("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType").RenderArgs): import("@jbrowse/plugin-wiggle/dist/WiggleBaseRenderer").ResultsDeserialized;
         serializeResultsInWorker(result: import("@jbrowse/plugin-wiggle/dist/WiggleBaseRenderer").RenderResults, args: import("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType").RenderArgsDeserialized): import("@jbrowse/plugin-wiggle/dist/WiggleBaseRenderer").ResultsSerialized;
         getExpandedRegion(region: import("@jbrowse/core/util").AugmentedRegion, _renderArgs: import("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType").RenderArgsDeserialized): import("@jbrowse/core/util").AugmentedRegion;
-        getFeatures(renderArgs: import("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType").RenderArgsDeserialized): Promise<Map<string, import("@jbrowse/core/util").Feature>>;
-        featurePassesFilters(renderArgs: import("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType").RenderArgsDeserialized, feature: import("@jbrowse/core/util").Feature): boolean;
+        getFeatures(renderArgs: import("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType").RenderArgsDeserialized): Promise<Map<string, Feature>>;
+        featurePassesFilters(renderArgs: import("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType").RenderArgsDeserialized, feature: Feature): boolean;
         deserializeArgsInWorker(args: import("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType").RenderArgsSerialized): import("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType").RenderArgsDeserialized;
         renderInClient(rpcManager: import("@jbrowse/core/rpc/RpcManager").default, args: import("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType").RenderArgs): Promise<import("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType").ResultsSerialized>;
         renderInWorker(args: import("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType").RenderArgsSerialized): Promise<import("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType").ResultsSerialized>;
-        freeResourcesInClient(rpcManager: import("@jbrowse/core/rpc/RpcManager").default, args: import("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType").RenderArgs): Promise<number>;
+        freeResourcesInClient(rpcManager: import("@jbrowse/core/rpc/RpcManager").default, args: import("@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType").RenderArgs): Promise<void>;
         ReactComponent: import("@jbrowse/core/util").AnyReactComponentType;
         configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
         pluginManager: PluginManager;
-        freeResources(): number;
+        freeResources(_args: any): void;
         name: string;
         maybeDisplayName?: string;
         readonly displayName: string;
     };
 };
+export {};