jbrowse-plugin-graphgenomeviewer 8.4.0 → 8.6.0

package/dist/chunks/chunk-4XY7HUQR.js

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+import{i as M,l as W,p as F}from"./chunk-X2QGBINE.js";import{b as O,h as B}from"./chunk-UC2NHZ7E.js";import{K as f,Q as A,X as _}from"./chunk-OPWSPSAE.js";import{f as R}from"./chunk-J2PN6CG3.js";import{D as x,E,H as S,d as C,o as T,q as I,r as w,s as L,t as N,w as D,y as G,z as P}from"./chunk-WE7DQVXF.js";import{b as t,c as r,d as s}from"./chunk-DUU6T2I5.js";var k=[{value:0,label:"Fastest"},{value:1,label:"Fast"},{value:2,label:"Default"},{value:3,label:"Fine"},{value:4,label:"Best"}];var U=s(function({label:n,value:e,options:o,testId:p,size:h,sx:a,disabled:m,title:u,shown:b,onChange:H}){let y=R();return r(L,{size:h,sx:a,disabled:m,title:u,children:[t(D,{id:y,shrink:!0,children:n}),t(x,{labelId:y,value:e,label:n,notched:!0,displayEmpty:!0,"data-testid":p,renderValue:i=>b??o.find(Y=>Y.value===i)?.label??i,onChange:i=>{H(i.target.value)},children:o.map(i=>t(P,{value:i.value,disabled:i.disabled,title:i.disabled?void 0:i.description,children:t(G,{primary:i.label,secondary:i.disabled?i.description:void 0})},i.value))})]})});var g=F()({section:{marginBottom:24},group:{marginBottom:16},heading:{marginBottom:8}}),l=s(function({warn:n=!1,children:e}){return t(S,{variant:"caption",component:"div",color:n?"warning.main":"text.secondary",children:e})}),v=s(function({title:n,children:e}){let{classes:o}=g();return r("section",{className:o.group,children:[t(S,{variant:"subtitle1",className:o.heading,children:n}),e]})}),Q=s(function({label:n,checked:e,onChange:o,children:p}){let{classes:h}=g();return r("div",{className:h.section,children:[t(N,{control:t(E,{checked:e,onChange:a=>{o(a.target.checked)}}),label:n}),p]})}),d=s(function({children:n,...e}){let{classes:o}=g();return r("div",{className:o.section,children:[t(U,{sx:{minWidth:200},...e}),n]})}),$=[5e3,2e4,5e4,1e5];function q(c){return[...new Set([...$,c])].sort((n,e)=>n-e).map(n=>({value:String(n),label:n.toLocaleString()}))}var z=s(function({label:n,choices:e,stored:o,auto:p,testId:h,onChange:a,children:m}){return e.length>0?t(d,{label:n,value:e.some(u=>u.trackId===o)?o:"",options:[{value:"",label:`Automatic (${p?.name??"none"})`},...e.map(({trackId:u,name:b})=>({value:u,label:b}))],testId:h,onChange:a,children:m}):null}),K=s(function(n){let{model:e,onClose:o,children:p}=n,{classes:h}=g();return r(C,{open:!0,onClose:o,title:"Graph settings",children:[r(w,{children:[r(v,{title:"Subgraph",children:[p,t(d,{label:"Node limit",value:String(e.maxGraphNodes),options:q(e.maxGraphNodes),testId:"graph-node-limit-select",onChange:a=>{e.setMaxGraphNodes(Number(a))},children:t(l,{children:"The most nodes a layout draws; past it the graph is declined. Walk rows take no limit."})})]}),r(v,{title:"Drawing",children:[e.anchorPaths.length>1?t(d,{label:"Reference path",value:e.activeReferencePath??"",options:e.anchorPaths.map(({name:a})=>({value:a,label:a})),testId:"graph-reference-path-select",onChange:a=>{e.setReferencePath(a),e.recomputeLayout()},children:t(l,{children:"The path the anchored layouts place x along"})}):null,t(d,{label:"Node width",value:e.nodeWidth,options:A,testId:"graph-node-width-select",onChange:a=>{e.setNodeWidth(a)},children:t(l,{children:"Depth as width. In a cut with walks, depth is how many haplotypes carry the node."})}),t(d,{label:"Link width",value:e.linkWidth,options:_,testId:"graph-link-width-select",onChange:a=>{e.setLinkWidth(a)},children:t(l,{children:"Walks as width, so a common route reads heavy and a private one thin."})}),r(Q,{label:"Draw paths",checked:e.drawPaths,onChange:a=>{e.setLayer("paths",a)},children:[t(l,{children:"Color each node by the paths through it, one lane per path"}),e.drawPaths&&!e.effectiveDrawPaths?t(l,{warn:!0,children:e.pathCount>f?`Off: ${e.pathCount.toLocaleString()} paths is past the ${f} this can tell apart`:"Off: this graph states no paths"}):null]}),t(z,{label:"Gene track",choices:e.geneTrackChoices,stored:e.geneTrackId,auto:W(e.geneTrackChoices,""),testId:"graph-gene-track-select",onChange:a=>{e.setGeneTrackId(a)},children:t(l,{children:"Where genes on the backbone come from"})}),t(z,{label:"Repeat track",choices:e.repeatTrackChoices,stored:e.repeatTrackId,auto:M(e.repeatTrackChoices,""),testId:"graph-repeat-track-select",onChange:a=>{e.setRepeatTrackId(a)},children:t(l,{children:"The tandem repeat annotation walk rows measure and tile by"})})]}),r(v,{title:"Force-directed layout",children:[e.hasGraph&&!e.usesLayoutEngine?t("div",{className:h.section,children:t(l,{warn:!0,children:"No effect on the current layout until Layout is Force-directed"})}):null,t(d,{label:"Engine",value:e.layoutEngine,options:O,testId:"graph-layout-engine-select",onChange:a=>{e.setLayoutEngine(a)},children:t(l,{children:"Stress keeps the reference straight, so a zoom keeps the picture; FMMM lets the whole graph settle."})}),t(d,{label:"Layout quality",value:String(e.layoutQuality),options:k.map(a=>({value:String(a.value),label:a.label})),testId:"graph-layout-quality-select",onChange:a=>{e.setLayoutQuality(Number(a))},children:t(l,{children:"The engine's iteration budget; higher is slower"})}),t(d,{label:"Bubble spread",value:e.bubbleSpread,options:B,testId:"graph-bubble-spread-select",onChange:a=>{e.setBubbleSpread(a)},children:t(l,{children:"How far the layout opens a bubble"})}),e.layoutEngine==="stress"?null:t(Q,{label:"Linear layout",checked:e.linearLayout,onChange:a=>{e.setLinearLayout(a)},children:t(l,{children:"Keeps a chain of nodes on one line where it can"})})]})]}),t(I,{children:t(T,{variant:"contained",color:"primary",onClick:o,children:"Close"})})]})}),be=K;export{U as a,be as b};
+//# sourceMappingURL=chunk-4XY7HUQR.js.map

package/dist/chunks/chunk-4XY7HUQR.js.map

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+{
+  "version": 3,
+  "sources": ["../../node_modules/.pnpm/@jbrowse+bandage-core@12.5.1/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-K5SIJGAE.js", "../../src/GraphGenomeView/components/LabelledSelect.tsx", "../../src/GraphGenomeView/components/GraphSettingsDialog.tsx"],
+  "sourcesContent": ["// src/layoutQualities.ts\nvar LAYOUT_QUALITIES = [\n  { value: 0, label: \"Fastest\" },\n  { value: 1, label: \"Fast\" },\n  { value: 2, label: \"Default\" },\n  { value: 3, label: \"Fine\" },\n  { value: 4, label: \"Best\" }\n];\n\nexport {\n  LAYOUT_QUALITIES\n};\n", "import { useId } from 'react'\n\nimport {\n  FormControl,\n  InputLabel,\n  ListItemText,\n  MenuItem,\n  Select,\n} from '@mui/material'\nimport { observer } from 'mobx-react'\n\nimport type { SxProps } from '@mui/material'\n\ninterface SelectOption<T extends string> {\n  value: T\n  label: string\n  // an option's tooltip, and the reason under a disabled one, whose tooltip\n  // cannot open\n  description?: string\n  disabled?: boolean\n}\n\n// One dropdown with its label tied to it, so a screen reader names the combobox\nexport default observer(function LabelledSelect<T extends string>({\n  label,\n  value,\n  options,\n  testId,\n  size,\n  sx,\n  disabled,\n  title,\n  shown,\n  onChange,\n}: {\n  label: string\n  value: T\n  options: readonly SelectOption<T>[]\n  testId?: string\n  size?: 'small' | 'medium'\n  sx?: SxProps\n  disabled?: boolean\n  title?: string\n  // what the closed select reads, when not the picked option's label\n  shown?: string\n  onChange: (value: T) => void\n}) {\n  const labelId = useId()\n  return (\n    <FormControl size={size} sx={sx} disabled={disabled} title={title}>\n      <InputLabel id={labelId} shrink>\n        {label}\n      </InputLabel>\n      <Select\n        labelId={labelId}\n        value={value}\n        label={label}\n        notched\n        displayEmpty\n        data-testid={testId}\n        renderValue={picked =>\n          shown ?? options.find(o => o.value === picked)?.label ?? picked\n        }\n        onChange={e => {\n          onChange(e.target.value as T)\n        }}\n      >\n        {options.map(o => (\n          <MenuItem\n            key={o.value}\n            value={o.value}\n            disabled={o.disabled}\n            title={o.disabled ? undefined : o.description}\n          >\n            <ListItemText\n              primary={o.label}\n              secondary={o.disabled ? o.description : undefined}\n            />\n          </MenuItem>\n        ))}\n      </Select>\n    </FormControl>\n  )\n})\n", "import type { ReactNode } from 'react'\n\nimport { BUBBLE_SPREADS } from '@jbrowse/bandage-core/bubbleSpreads'\nimport { EDGE_WIDTHS } from '@jbrowse/bandage-core/edgeWidths'\nimport { LAYOUT_ENGINES } from '@jbrowse/bandage-core/layoutEngines'\nimport { LAYOUT_QUALITIES } from '@jbrowse/bandage-core/layoutQualities'\nimport { NODE_WIDTHS } from '@jbrowse/bandage-core/nodeWidths'\nimport { MAX_PATH_COLORS } from '@jbrowse/bandage-core/pathColors'\nimport { Dialog } from '@jbrowse/core/ui'\nimport {\n  Button,\n  DialogActions,\n  DialogContent,\n  FormControlLabel,\n  Switch,\n  Typography,\n} from '@mui/material'\nimport { observer } from 'mobx-react'\nimport { makeStyles } from 'tss-react/mui'\n\nimport LabelledSelect from './LabelledSelect'\nimport { pickGeneTrack } from '../genes/geneFeatures'\nimport { pickRepeatTrack } from '../repeats/repeatFeatures'\n\nimport type { GraphPaneModel } from '../model'\n\nconst useStyles = makeStyles()({\n  section: {\n    marginBottom: 24,\n  },\n  group: {\n    marginBottom: 16,\n  },\n  heading: {\n    marginBottom: 8,\n  },\n})\n\nconst Caption = observer(function Caption({\n  warn = false,\n  children,\n}: {\n  warn?: boolean\n  children: ReactNode\n}) {\n  return (\n    <Typography\n      variant=\"caption\"\n      component=\"div\"\n      color={warn ? 'warning.main' : 'text.secondary'}\n    >\n      {children}\n    </Typography>\n  )\n})\n\nconst Group = observer(function Group({\n  title,\n  children,\n}: {\n  title: string\n  children: ReactNode\n}) {\n  const { classes } = useStyles()\n  return (\n    <section className={classes.group}>\n      <Typography variant=\"subtitle1\" className={classes.heading}>\n        {title}\n      </Typography>\n      {children}\n    </section>\n  )\n})\n\nconst SettingSwitch = observer(function SettingSwitch({\n  label,\n  checked,\n  onChange,\n  children,\n}: {\n  label: string\n  checked: boolean\n  onChange: (checked: boolean) => void\n  children?: ReactNode\n}) {\n  const { classes } = useStyles()\n  return (\n    <div className={classes.section}>\n      <FormControlLabel\n        control={\n          <Switch\n            checked={checked}\n            onChange={e => {\n              onChange(e.target.checked)\n            }}\n          />\n        }\n        label={label}\n      />\n      {children}\n    </div>\n  )\n})\n\n// one dropdown setting, at the dialog's width, and its caption\nconst SettingSelect = observer(function SettingSelect<T extends string>({\n  children,\n  ...props\n}: Omit<Parameters<typeof LabelledSelect<T>>[0], 'size' | 'sx'> & {\n  children?: ReactNode\n}) {\n  const { classes } = useStyles()\n  return (\n    <div className={classes.section}>\n      <LabelledSelect sx={{ minWidth: 200 }} {...props} />\n      {children}\n    </div>\n  )\n})\n\nconst NODE_LIMITS = [5000, 20_000, 50_000, 100_000]\n\n// the presets, with a limit a session states among them\nfunction nodeLimitOptions(current: number) {\n  return [...new Set([...NODE_LIMITS, current])]\n    .sort((a, b) => a - b)\n    .map(limit => ({ value: String(limit), label: limit.toLocaleString() }))\n}\n\ninterface NamedTrack {\n  trackId: string\n  name: string\n}\n\n// '' leaves the pick to the heuristic, so a session can go back to it\nconst TrackPickSetting = observer(function TrackPickSetting({\n  label,\n  choices,\n  stored,\n  auto,\n  testId,\n  onChange,\n  children,\n}: {\n  label: string\n  choices: NamedTrack[]\n  stored: string\n  auto: NamedTrack | undefined\n  testId: string\n  onChange: (trackId: string) => void\n  children: ReactNode\n}) {\n  return choices.length > 0 ? (\n    <SettingSelect\n      label={label}\n      value={choices.some(t => t.trackId === stored) ? stored : ''}\n      options={[\n        { value: '', label: `Automatic (${auto?.name ?? 'none'})` },\n        ...choices.map(({ trackId, name }) => ({\n          value: trackId,\n          label: name,\n        })),\n      ]}\n      testId={testId}\n      onChange={onChange}\n    >\n      {children}\n    </SettingSelect>\n  ) : null\n})\n\n// Toggles the menus already offer (halos, genes, color) stay out of here.\n// `children` is the host's own part of the subgraph group.\nconst GraphSettingsDialog = observer(function GraphSettingsDialog(props: {\n  model: GraphPaneModel\n  onClose: () => void\n  children?: ReactNode\n}) {\n  const { model, onClose, children } = props\n  const { classes } = useStyles()\n\n  return (\n    <Dialog open onClose={onClose} title=\"Graph settings\">\n      <DialogContent>\n        <Group title=\"Subgraph\">\n          {children}\n          <SettingSelect\n            label=\"Node limit\"\n            value={String(model.maxGraphNodes)}\n            options={nodeLimitOptions(model.maxGraphNodes)}\n            testId=\"graph-node-limit-select\"\n            onChange={limit => {\n              model.setMaxGraphNodes(Number(limit))\n            }}\n          >\n            <Caption>\n              The most nodes a layout draws; past it the graph is declined. Walk\n              rows take no limit.\n            </Caption>\n          </SettingSelect>\n        </Group>\n\n        <Group title=\"Drawing\">\n          {model.anchorPaths.length > 1 ? (\n            <SettingSelect\n              label=\"Reference path\"\n              value={model.activeReferencePath ?? ''}\n              options={model.anchorPaths.map(({ name }) => ({\n                value: name,\n                label: name,\n              }))}\n              testId=\"graph-reference-path-select\"\n              onChange={name => {\n                model.setReferencePath(name)\n                void model.recomputeLayout()\n              }}\n            >\n              <Caption>The path the anchored layouts place x along</Caption>\n            </SettingSelect>\n          ) : null}\n\n          <SettingSelect\n            label=\"Node width\"\n            value={model.nodeWidth}\n            options={NODE_WIDTHS}\n            testId=\"graph-node-width-select\"\n            onChange={width => {\n              model.setNodeWidth(width)\n            }}\n          >\n            <Caption>\n              Depth as width. In a cut with walks, depth is how many haplotypes\n              carry the node.\n            </Caption>\n          </SettingSelect>\n\n          <SettingSelect\n            label=\"Link width\"\n            value={model.linkWidth}\n            options={EDGE_WIDTHS}\n            testId=\"graph-link-width-select\"\n            onChange={links => {\n              model.setLinkWidth(links)\n            }}\n          >\n            <Caption>\n              Walks as width, so a common route reads heavy and a private one\n              thin.\n            </Caption>\n          </SettingSelect>\n\n          <SettingSwitch\n            label=\"Draw paths\"\n            checked={model.drawPaths}\n            onChange={draw => {\n              model.setLayer('paths', draw)\n            }}\n          >\n            <Caption>\n              Color each node by the paths through it, one lane per path\n            </Caption>\n            {model.drawPaths && !model.effectiveDrawPaths ? (\n              <Caption warn>\n                {model.pathCount > MAX_PATH_COLORS\n                  ? `Off: ${model.pathCount.toLocaleString()} paths is past the ${MAX_PATH_COLORS} this can tell apart`\n                  : 'Off: this graph states no paths'}\n              </Caption>\n            ) : null}\n          </SettingSwitch>\n\n          <TrackPickSetting\n            label=\"Gene track\"\n            choices={model.geneTrackChoices}\n            stored={model.geneTrackId}\n            auto={pickGeneTrack(model.geneTrackChoices, '')}\n            testId=\"graph-gene-track-select\"\n            onChange={trackId => {\n              model.setGeneTrackId(trackId)\n            }}\n          >\n            <Caption>Where genes on the backbone come from</Caption>\n          </TrackPickSetting>\n\n          <TrackPickSetting\n            label=\"Repeat track\"\n            choices={model.repeatTrackChoices}\n            stored={model.repeatTrackId}\n            auto={pickRepeatTrack(model.repeatTrackChoices, '')}\n            testId=\"graph-repeat-track-select\"\n            onChange={trackId => {\n              model.setRepeatTrackId(trackId)\n            }}\n          >\n            <Caption>\n              The tandem repeat annotation walk rows measure and tile by\n            </Caption>\n          </TrackPickSetting>\n        </Group>\n\n        <Group title=\"Force-directed layout\">\n          {model.hasGraph && !model.usesLayoutEngine ? (\n            <div className={classes.section}>\n              <Caption warn>\n                No effect on the current layout until Layout is Force-directed\n              </Caption>\n            </div>\n          ) : null}\n\n          <SettingSelect\n            label=\"Engine\"\n            value={model.layoutEngine}\n            options={LAYOUT_ENGINES}\n            testId=\"graph-layout-engine-select\"\n            onChange={engine => {\n              model.setLayoutEngine(engine)\n            }}\n          >\n            <Caption>\n              Stress keeps the reference straight, so a zoom keeps the picture;\n              FMMM lets the whole graph settle.\n            </Caption>\n          </SettingSelect>\n\n          <SettingSelect\n            label=\"Layout quality\"\n            value={String(model.layoutQuality)}\n            options={LAYOUT_QUALITIES.map(q => ({\n              value: String(q.value),\n              label: q.label,\n            }))}\n            testId=\"graph-layout-quality-select\"\n            onChange={quality => {\n              model.setLayoutQuality(Number(quality))\n            }}\n          >\n            <Caption>\n              The engine&apos;s iteration budget; higher is slower\n            </Caption>\n          </SettingSelect>\n\n          <SettingSelect\n            label=\"Bubble spread\"\n            value={model.bubbleSpread}\n            options={BUBBLE_SPREADS}\n            testId=\"graph-bubble-spread-select\"\n            onChange={spread => {\n              model.setBubbleSpread(spread)\n            }}\n          >\n            <Caption>How far the layout opens a bubble</Caption>\n          </SettingSelect>\n\n          {model.layoutEngine === 'stress' ? null : (\n            <SettingSwitch\n              label=\"Linear layout\"\n              checked={model.linearLayout}\n              onChange={linear => {\n                model.setLinearLayout(linear)\n              }}\n            >\n              <Caption>Keeps a chain of nodes on one line where it can</Caption>\n            </SettingSwitch>\n          )}\n        </Group>\n      </DialogContent>\n\n      <DialogActions>\n        <Button variant=\"contained\" color=\"primary\" onClick={onClose}>\n          Close\n        </Button>\n      </DialogActions>\n    </Dialog>\n  )\n})\n\nexport default GraphSettingsDialog\n"],
+  "mappings": 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+  "names": ["LAYOUT_QUALITIES", "LabelledSelect_default", "observer", "label", "value", "options", "testId", "size", "sx", "disabled", "title", "shown", "onChange", "labelId", "useId", "jsxs", "FormControl", "jsx", "InputLabel", "Select", "picked", "o", "e", "MenuItem", "ListItemText", "useStyles", "makeStyles", "Caption", "observer", "warn", "children", "jsx", "Typography", "Group", "title", "classes", "jsxs", "SettingSwitch", "label", "checked", "onChange", "FormControlLabel", "Switch", "e", "SettingSelect", "props", "LabelledSelect_default", "NODE_LIMITS", "nodeLimitOptions", "current", "a", "b", "limit", "TrackPickSetting", "choices", "stored", "auto", "testId", "t", "trackId", "name", "GraphSettingsDialog", "model", "onClose", "Dialog", "DialogContent", "NODE_WIDTHS", "width", "EDGE_WIDTHS", "links", "draw", "MAX_PATH_COLORS", "pickGeneTrack", "pickRepeatTrack", "LAYOUT_ENGINES", "engine", "LAYOUT_QUALITIES", "q", "quality", "BUBBLE_SPREADS", "spread", "linear", "DialogActions", "Button", "GraphSettingsDialog_default"]
+}

package/dist/chunks/chunk-6OZGIMZC.js

@@ -0,0 +1,2 @@
+import{i as y}from"./chunk-J2PN6CG3.js";import{F as k,H as f,d as s,n as d,o as r,p as g,q as m,r as u}from"./chunk-WE7DQVXF.js";import{b as t,c as i,d as p}from"./chunk-DUU6T2I5.js";var R=p(function({title:C,label:b,caption:h,testId:D,options:l,initial:v,optionLabel:c=o=>o,confirmLabel:x,onPick:A,onClose:n}){let[o,B]=y(()=>v.filter(e=>l.includes(e)));return i(s,{open:!0,onClose:n,title:C,children:[i(u,{children:[t(d,{multiple:!0,disableCloseOnSelect:!0,"data-testid":D,options:l,getOptionLabel:c,value:o,onChange:(e,a)=>{B(a)},renderOption:({key:e,...a},N,{selected:O})=>i("li",{...a,children:[t(g,{size:"small",checked:O}),c(N)]},e),renderInput:e=>t(k,{...e,autoFocus:!0,label:b,placeholder:"type to search"})}),t(f,{variant:"caption",color:"text.secondary",children:h})]}),i(m,{children:[t(r,{onClick:n,children:"Cancel"}),t(r,{variant:"contained",onClick:()=>{A(o),n()},children:x(o)})]})]})});export{R as a};
+//# sourceMappingURL=chunk-6OZGIMZC.js.map

package/dist/chunks/chunk-6OZGIMZC.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../../src/GraphGenomeView/components/PickNamesDialog.tsx"],
+  "sourcesContent": ["import { useState } from 'react'\nimport type { ReactNode } from 'react'\n\nimport { Dialog } from '@jbrowse/core/ui'\nimport {\n  Autocomplete,\n  Button,\n  Checkbox,\n  DialogActions,\n  DialogContent,\n  TextField,\n  Typography,\n} from '@mui/material'\nimport { observer } from 'mobx-react'\n\n// A set of names picked by search, in the order picked, committed on confirm\nexport default observer(function PickNamesDialog({\n  title,\n  label,\n  caption,\n  testId,\n  options,\n  initial,\n  optionLabel = name => name,\n  confirmLabel,\n  onPick,\n  onClose,\n}: {\n  title: string\n  label: string\n  caption: ReactNode\n  testId: string\n  options: string[]\n  initial: string[]\n  optionLabel?: (name: string) => string\n  confirmLabel: (picked: string[]) => string\n  onPick: (picked: string[]) => void\n  onClose: () => void\n}) {\n  const [picked, setPicked] = useState(() =>\n    initial.filter(name => options.includes(name)),\n  )\n  return (\n    <Dialog open onClose={onClose} title={title}>\n      <DialogContent>\n        <Autocomplete\n          multiple\n          disableCloseOnSelect\n          data-testid={testId}\n          options={options}\n          getOptionLabel={optionLabel}\n          value={picked}\n          onChange={(_, value) => {\n            setPicked(value)\n          }}\n          renderOption={({ key, ...props }, name, { selected }) => (\n            <li key={key} {...props}>\n              <Checkbox size=\"small\" checked={selected} />\n              {optionLabel(name)}\n            </li>\n          )}\n          renderInput={params => (\n            <TextField\n              {...params}\n              autoFocus\n              label={label}\n              placeholder=\"type to search\"\n            />\n          )}\n        />\n        <Typography variant=\"caption\" color=\"text.secondary\">\n          {caption}\n        </Typography>\n      </DialogContent>\n      <DialogActions>\n        <Button onClick={onClose}>Cancel</Button>\n        <Button\n          variant=\"contained\"\n          onClick={() => {\n            onPick(picked)\n            onClose()\n          }}\n        >\n          {confirmLabel(picked)}\n        </Button>\n      </DialogActions>\n    </Dialog>\n  )\n})\n"],
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+  "names": ["PickNamesDialog_default", "observer", "title", "label", "caption", "testId", "options", "initial", "optionLabel", "name", "confirmLabel", "onPick", "onClose", "picked", "setPicked", "useState", "jsxs", "Dialog", "DialogContent", "jsx", "Autocomplete", "_", "value", "key", "props", "selected", "Checkbox", "params", "TextField", "Typography", "DialogActions", "Button"]
+}

package/dist/chunks/{chunk-OTBDKJEA.js → chunk-AGUEPVOR.js}

@@ -1,2 +1,2 @@
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-//# sourceMappingURL=chunk-OTBDKJEA.js.map
+//# sourceMappingURL=chunk-AGUEPVOR.js.map

package/dist/chunks/{chunk-OTBDKJEA.js.map → chunk-AGUEPVOR.js.map}

@@ -1,6 +1,6 @@
 {
   "version": 3,
-  "sources": ["../../node_modules/.pnpm/@jbrowse+synteny-core@5.0.0-beta.18_@emotion+react@11.14.0_@types+react@19.3.0_react@19_0b9c1c4d2b16eef60d202e26c552208a/node_modules/@jbrowse/synteny-core/esm/extractAlignmentData.js"],
+  "sources": ["../../node_modules/.pnpm/@jbrowse+synteny-core@5.0.0-beta.19_@emotion+react@11.14.0_@types+react@19.3.0_react@19_eb34fd01d29d05a1c3ac8167d41484d7/node_modules/@jbrowse/synteny-core/esm/extractAlignmentData.js"],
   "sourcesContent": ["/**\n * Extract diagonalization input (one entry per mated alignment) from raw\n * comparative features. Shared by the dotplot and synteny diagonalize RPCs so\n * both feed `diagonalizeRegions` from the same feature shape \u2014 a feature with a\n * `mate` (the paired location on the other assembly), `refName`, `start`,\n * `end`, and `strand`. Features without a `mate` are skipped.\n *\n * Features are fetched with adapter-space regions, so their `refName`/\n * `mate.refName` come back in the adapter's namespace. The optional\n * `refRefNameMap`/`queryRefNameMap` (both adapter refName -> canonical refName)\n * translate the reference and query axes back into the view's canonical\n * namespace so the diagonalization can match them against canonical regions and\n * hand canonical regions back to the view. A refName absent from a map is\n * already canonical (no alias) and passes through unchanged; an omitted map\n * leaves that axis in adapter space (fine when the caller passes adapter-space\n * regions for that axis).\n */\nexport function extractAlignmentData(features, { refRefNameMap = {}, queryRefNameMap = {}, } = {}) {\n    const out = [];\n    for (const feat of features) {\n        const mate = feat.get('mate');\n        if (mate) {\n            const refName = feat.get('refName');\n            out.push({\n                refRefName: refRefNameMap[refName] ?? refName,\n                queryRefName: queryRefNameMap[mate.refName] ?? mate.refName,\n                refStart: feat.get('start'),\n                refEnd: feat.get('end'),\n                queryStart: mate.start,\n                queryEnd: mate.end,\n                strand: feat.get('strand') ?? 1,\n            });\n        }\n    }\n    return out;\n}\n"],
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   "names": ["extractAlignmentData", "features", "refRefNameMap", "queryRefNameMap", "out", "feat", "mate", "refName"]

package/dist/chunks/{chunk-ZEE3HTOT.js → chunk-CGPYVMGQ.js}

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Lt=([e,t,n])=>Oe(Math.round(e),Math.round(t),Math.round(n),255),Mt=e=>Lt(Pt(e));function kn(){let e=new Map;return t=>{let n=e.get(t);return n===void 0&&(n=Mt(t),e.set(t,n)),n}}function mn(e,t,n,r=Mt){let o=e.start+e.bp,a=He(e,t);if("fill"in a)return[[e.start,o,r(a.fill)]];let i=a.stops.map(Pt),s=a.stops.map(b=>St(b)[0]),u=Math.abs(s.at(-1)-s[0]),c=Math.max(1,Math.min(Math.ceil(e.bp*n),Math.ceil(u),e.bp)),d=[];for(let b=0;b<c;b++){let h=(b+.5)/c*(i.length-1),l=Math.min(Math.floor(h),i.length-2),f=i[l],w=i[l+1],k=h-l;d.push([Math.round(e.start+e.bp*b/c),Math.round(e.start+e.bp*(b+1)/c),Lt([0,1,2].map(x=>f[x]+(w[x]-f[x])*k))])}return d}function ye(e){return{x:new Uint32Array(e),x2:new Uint32Array(e),row:new Uint32Array(e),color:new Uint32Array(e),count:0}}function Rn(e,t,n){return{x:e.x.subarray(t,n),x2:e.x2.subarray(t,n),row:e.row.subarray(t,n),color:e.color.subarray(t,n),count:n-t}}var xn=e=>e.gap?De(e.cause).px===oe?"hairlines":"gaps":"bars";function Ct(e,t,n){let r=kn(),o=e.map(c=>Fe(c.runs,t).map(d=>({kind:xn(d),pieces:mn(d,n,t,r)}))),a={bars:0,gaps:0,hairlines:0};for(let c of o)for(let d of c)a[d.kind]+=d.pieces.length;let i={bars:ye(a.bars),gaps:ye(a.gaps),hairlines:ye(a.hairlines)},s={bars:new Uint32Array(e.length+1),gaps:new Uint32Array(e.length+1),hairlines:new Uint32Array(e.length+1)},u=1;return o.forEach((c,d)=>{for(let b of c){let h=i[b.kind];for(let[l,f,w]of b.pieces){let k=h.count++;h.x[k]=l,h.x2[k]=f,h.row[k]=d,h.color[k]=w,u=Math.max(u,f)}}for(let b of wn)s[b][d+1]=i[b].count}),{...i,barRows:s.bars,gapRows:s.gaps,hairlineRows:s.hairlines,longest:u}}function _t(e,t,n){let{longest:r}=t,o={start:0,end:r,screenStartPx:n.origin*n.scaleX+n.translateX,screenEndPx:(n.origin+r)*n.scaleX+n.translateX,reversed:!1,displayedRegionIndex:0},a={canvasWidth:n.width,canvasHeight:n.height},i=n.rowPx*n.scaleY;for(let{first:s,count:u,rowY:c}of n.blocks){let d=i/2-n.translateY-(c-s*n.rowPx)*n.scaleY,b=(c-n.rowPx/2)*n.scaleY+n.translateY;if(!(b>n.height||b+u*i<0))for(let[h,l,f]of[[t.bars,t.barRows,n.barPx],[t.gaps,t.gapRows,Math.min(We,n.barPx)],[t.hairlines,t.hairlineRows,Math.min(oe,n.barPx)]])yt.paintBlock(e,Rn(h,l[s],l[s+u]),o,a,{rowHeight:i,rowProportion:f/i,minWidthPx:1,seamPx:0,scrollTop:d})}}var yn=g(function({model:t}){let n=U(()=>X(()=>t.walkRowBars?Ct(t.walkRowList,t.scaleX,t.referenceRampDomain):void 0),[t]),r=L(o=>{let a=t.walkRowBars,i=t.walkRowPlacement,s=t.walkRowPitch,u=n.get();!a||!i||!s||!u||_t(o,u,{...t.screenTransform,width:t.paneWidth,height:t.canvasHeight,rowPx:s.rowPx,barPx:s.barPx,origin:a.origin,blocks:i.blocks(a.rows.length+1)})},[t,n]);return p(C,{model:t,zIndex:3,testId:"graph-walk-rows-spans",paint:r})}),Sn="rgba(160, 196, 232, 0.55)",Pn="rgba(160, 140, 220, 0.55)",Ln=g(function({model:t}){let n=L(r=>{let o=t.walkRowRibbons,a=t.walkRowBars,i=t.walkRowPlacement,s=t.walkRowPitch;if(!o||!a||!i||!s)return;let{scaleX:u,scaleY:c,translateX:d,translateY:b}=t.screenTransform,h=f=>(a.origin+f)*u+d,l=s.barPx/2;for(let{row:f,a0:w,a1:k,b0:x,b1:S}of o){let H=i.rowY(f)*c+b+l,$=i.rowY(f+1)*c+b-l;r.fillStyle=x>S?Pn:Sn,r.beginPath(),r.moveTo(h(w),H),r.lineTo(h(k),H),r.lineTo(h(S),$),r.lineTo(h(x),$),r.closePath(),r.fill()}},[t]);return p(C,{model:t,zIndex:2,testId:"graph-walk-rows-ribbons",paint:n})}),Mn=g(function({model:t}){let n=L(r=>{let o=t.sharedBlocks,a=t.walkRowBars,i=t.walkRowPlacement,s=t.walkRowPitch;if(!o||!a||!i||!s)return;let{scaleX:u,scaleY:c,translateX:d,translateY:b}=t.screenTransform;pt(r,o,{x:h=>(a.origin+h)*u+d,rowCentre:h=>i.rowY(h)*c+b,barPx:s.barPx})},[t]);return p(C,{model:t,zIndex:3,testId:"graph-walk-rows-blocks",paint:n})}),Cn=g(function({model:t}){let n=t.walkRowBars,r=t.walkRowPlacement,o=t.walkRowPitch;if(!n||!r||!o||!t.hoveredWalkRowText)return null;let a=t.walkRowList,i=a.findIndex(c=>c.name===t.hoveredWalkRow),s=a[i];if(!s)return null;let u=t.toScreen({x:n.origin,y:r.rowY(i)});return p("rect",{"data-testid":"graph-walk-row-hovered",x:u.x-2,y:u.y-o.rowPx/2-1,width:Ge(s)*t.scaleX+4,height:o.rowPx+2,fill:"none",stroke:"#111",strokeWidth:1})}),_n=g(function({model:t,vector:n=!1}){let r=N(),o=t.walkRowBars,a=t.walkRowPlacement,i=t.walkRowPitch;if(!o||!a||!i)return null;let{paneWidth:s,canvasHeight:u}=t,c={...t.screenTransform,width:s,height:u,...i,bars:n};return m(v,{children:[n||!t.walkRowRibbons?null:p(Ln,{model:t}),n?null:p(yn,{model:t}),n||!t.sharedBlocks?null:p(Mn,{model:t}),m(M,{model:t,zIndex:3,overflow:"visible",testId:"graph-walk-rows",children:[Je(o,t.walkRowGroups?.sections??[],a.rowY,c,{ramp:t.referenceRampDomain,rowGenes:t.walkRowGenes,idPrefix:r}).map((d,b)=>p(D,{el:d},b)),a.headers.map(d=>p("text",{x:10,y:t.toScreen({x:0,y:d.top}).y+je-4,fontFamily:"sans-serif",fontSize:11,fontWeight:"bold",fill:"#333","data-testid":"graph-walk-section",children:d.title},d.key)),p(Cn,{model:t})]})]})}),ka=_n;export{Et as a,it as b,M as c,Kn as d,N as e,D as f,j as g,Gr as h,Dr as i,Zt as j,tn as k,Hr as l,$r as m,an as n,qr as o,Zr as p,Qr as q,eo as r,sn as s,to as t,no as u,po as v,To as w,Ao as x,pn as y,$o as z,bn as A,Qo as B,ka as C};
+//# sourceMappingURL=chunk-DIGIM3XY.js.map

package/dist/chunks/chunk-DIGIM3XY.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../../src/GraphGenomeView/components/PaneLayer.tsx", "../../src/GraphGenomeView/components/BubbleHalos.tsx", "../../src/GraphGenomeView/walkRowBlocks.ts", "../../src/GraphGenomeView/legendSections.ts", "../../src/GraphGenomeView/components/ElTree.tsx", "../../src/GraphGenomeView/components/LegendSwatch.tsx", "../../src/GraphGenomeView/components/legendStyles.ts", "../../src/GraphGenomeView/components/GenePins.tsx", "../../src/GraphGenomeView/components/LabelChip.tsx", "../../src/GraphGenomeView/components/LabelLayer.tsx", "../../src/GraphGenomeView/components/ReferenceStripOverlay.tsx", "../../src/GraphGenomeView/components/TubeMapOverlay.tsx", "jbrowse-host:@jbrowse/render-core/marks", "../../src/GraphGenomeView/walkRowSpans.ts", "../../src/GraphGenomeView/components/WalkRowsOverlay.tsx"],
+  "sourcesContent": ["import { useEffect, useRef } from 'react'\nimport type { ReactNode } from 'react'\n\nimport { syncCanvasSize } from '@jbrowse/bandage-core/renderer/canvas'\nimport { autorun } from 'mobx'\nimport { observer } from 'mobx-react'\n\nimport { dependOn } from '../pane/paneBase'\nimport { trackedDpr } from '../trackedDpr'\n\nimport type { GraphPaneModel } from '../model'\n\n// marks an overlay whose labels move with the drawing, so a press on one pans\nexport const PANS_WITH_DRAWING = 'data-pans-with-drawing'\n\n// A layer over the pane's canvas that leaves the pointer to it\nexport function paneLayerStyle(\n  zIndex: number,\n  overflow?: 'hidden' | 'visible',\n) {\n  return {\n    position: 'absolute' as const,\n    left: 0,\n    top: 0,\n    pointerEvents: 'none' as const,\n    overflow,\n    zIndex,\n  }\n}\n\n// An SVG the pane's size, over the canvas or inside PaneSvg's export\nexport const PaneSvgLayer = observer(function PaneSvgLayer({\n  model,\n  zIndex,\n  overflow = 'hidden',\n  testId,\n  pansWithDrawing,\n  children,\n}: {\n  model: GraphPaneModel\n  zIndex: number\n  overflow?: 'hidden' | 'visible'\n  testId?: string\n  pansWithDrawing?: boolean\n  children: ReactNode\n}) {\n  return (\n    <svg\n      style={{\n        ...paneLayerStyle(zIndex, overflow),\n        userSelect: pansWithDrawing ? 'none' : undefined,\n      }}\n      width={model.paneWidth}\n      height={model.canvasHeight}\n      data-testid={testId}\n      {...(pansWithDrawing ? { [PANS_WITH_DRAWING]: '' } : {})}\n    >\n      {children}\n    </svg>\n  )\n})\n\n// Layout units onto the screen. Its own observer, so a pan frame re-renders\n// this group's transform and not the children a parent built.\nexport const PaneTransformGroup = observer(function PaneTransformGroup({\n  model,\n  children,\n}: {\n  model: GraphPaneModel\n  children: ReactNode\n}) {\n  const { scaleX, scaleY, translateX, translateY } = model\n  return (\n    <g\n      transform={`translate(${translateX} ${translateY}) scale(${scaleX} ${scaleY})`}\n    >\n      {children}\n    </g>\n  )\n})\n\n// A canvas the pane's size that an autorun repaints, so a pan moves its ink in\n// the same frame as the drawing. `paint` draws in css px.\nexport const PaneOverlayCanvas = observer(function PaneOverlayCanvas({\n  model,\n  zIndex,\n  shown = true,\n  testId,\n  paint,\n}: {\n  model: GraphPaneModel\n  zIndex: number\n  shown?: boolean\n  testId: string\n  paint: (ctx: CanvasRenderingContext2D, dpr: number) => void\n}) {\n  const ref = useRef<HTMLCanvasElement>(null)\n  useEffect(() => {\n    if (!shown) {\n      return undefined\n    }\n    return autorun(() => {\n      const canvas = ref.current\n      const ctx = canvas?.getContext('2d')\n      if (canvas && ctx) {\n        const width = model.paneWidth\n        const height = model.canvasHeight\n        dependOn(trackedDpr())\n        const dpr = syncCanvasSize(canvas, width, height)\n        ctx.setTransform(dpr, 0, 0, dpr, 0, 0)\n        ctx.clearRect(0, 0, width, height)\n        paint(ctx, dpr)\n      }\n    })\n  }, [model, shown, paint])\n  return (\n    <canvas\n      ref={ref}\n      data-testid={shown ? testId : undefined}\n      style={{ ...paneLayerStyle(zIndex), display: shown ? 'block' : 'none' }}\n    />\n  )\n})\n", "import { bubbleKey, sameBubble } from '@jbrowse/bandage-core/bubbles/bubbleLine'\nimport { BUBBLE_KIND_COLORS } from '@jbrowse/bandage-core/bubbles/classifyBubble'\nimport { HALO_FACTOR } from '@jbrowse/bandage-core/labelLayout'\nimport { observer } from 'mobx-react'\n\nimport { PaneSvgLayer, PaneTransformGroup } from './PaneLayer'\n\nimport type { GraphPaneModel } from '../model'\n\n// The bubbles over a node drawing: each a translucent halo along its nodes,\n// drawn once in layout units and moved with the canvas by one transform. The\n// halo takes no pointer events, so the nodes under it still hover and drag;\n// its name and its routes' chips are LabelLayer's. A small variant is\n// LabelLayer's tick, and shows its halo only while hovered.\n\nconst BubbleHalos = observer(function BubbleHalos({\n  model,\n}: {\n  model: GraphPaneModel\n}) {\n  const { bubbleHalos, hoveredBubble } = model\n  if (bubbleHalos.length === 0) {\n    return null\n  }\n  const halo = model.contigThickness * HALO_FACTOR\n  return (\n    <PaneSvgLayer model={model} zIndex={2} testId=\"graph-bubble-halos\">\n      <PaneTransformGroup model={model}>\n        {bubbleHalos\n          .filter(\n            h =>\n              !h.whole &&\n              (!h.tick ||\n                (hoveredBubble && sameBubble(h.bubble, hoveredBubble))),\n          )\n          .map(h => (\n            <path\n              key={bubbleKey(h.bubble)}\n              d={h.path}\n              fill=\"none\"\n              stroke={BUBBLE_KIND_COLORS[h.kind]}\n              strokeOpacity={\n                hoveredBubble && sameBubble(h.bubble, hoveredBubble)\n                  ? 0.45\n                  : model.bubbleFaded(h)\n                    ? 0.06\n                    : 0.22\n              }\n              strokeWidth={halo}\n              strokeLinecap=\"round\"\n              strokeLinejoin=\"round\"\n              vectorEffect=\"non-scaling-stroke\"\n            />\n          ))}\n      </PaneTransformGroup>\n    </PaneSvgLayer>\n  )\n})\n\nexport default BubbleHalos\n", "import type { WalkRowBlock } from '@jbrowse/bandage-core/layout/walkRowLinks'\n\n// ggbandage's: the three biggest blocks in colour, the rest a pale grey that\n// still carries its letter\nconst BLOCK_COLORS = ['#d4735e', '#d8a94a', '#c98aa4']\nconst OTHER_BLOCK = '#e6e6e6'\nconst BLOCK_EDGE = '#555'\nconst LETTER_FONT = 'bold 11px sans-serif'\nconst MIN_LETTER_PX = 12\nconst MIN_LETTER_BAR_PX = 9\n\nexport const blockFill = (block: number) => BLOCK_COLORS[block] ?? OTHER_BLOCK\n\n// A, B, ... Z, then AA, AB, ...\nexport function blockLetter(block: number): string {\n  const letter = String.fromCharCode(65 + (block % 26))\n  return block < 26 ? letter : blockLetter(Math.floor(block / 26) - 1) + letter\n}\n\n// How many blocks get a colour of their own, for the key\nexport const COLORED_BLOCKS = BLOCK_COLORS.length\n\n// Each stretch as a box over its row's bar, lettered where it is wide enough\nexport function paintWalkRowBlocks(\n  ctx: CanvasRenderingContext2D,\n  blocks: WalkRowBlock[],\n  f: {\n    x: (offset: number) => number\n    rowCentre: (row: number) => number\n    barPx: number\n  },\n) {\n  ctx.font = LETTER_FONT\n  ctx.textAlign = 'center'\n  ctx.textBaseline = 'middle'\n  for (const { row, start, bp, block } of blocks) {\n    const left = f.x(start)\n    const width = f.x(start + bp) - left\n    const top = f.rowCentre(row) - f.barPx / 2\n    ctx.fillStyle = blockFill(block)\n    ctx.fillRect(left, top, width, f.barPx)\n    ctx.strokeStyle = BLOCK_EDGE\n    ctx.lineWidth = 1\n    ctx.strokeRect(left + 0.5, top + 0.5, width - 1, f.barPx - 1)\n    if (width >= MIN_LETTER_PX && f.barPx >= MIN_LETTER_BAR_PX) {\n      ctx.fillStyle = '#111'\n      ctx.fillText(blockLetter(block), left + width / 2, f.rowCentre(row))\n    }\n  }\n}\n", "import { sameBubble } from '@jbrowse/bandage-core/bubbles/bubbleLine'\nimport {\n  BUBBLE_KIND_COLORS,\n  BUBBLE_KIND_NAMES,\n} from '@jbrowse/bandage-core/bubbles/classifyBubble'\nimport {\n  dashedDeletions,\n  deletionKey,\n} from '@jbrowse/bandage-core/deletionEdges'\nimport { edgeWidthFactor } from '@jbrowse/bandage-core/edgeWidths'\nimport { EXON_COLOR } from '@jbrowse/bandage-core/genes/exonOutline'\nimport { formatBp } from '@jbrowse/bandage-core/graphLabels'\nimport {\n  BAR_PX as WALK_ROW_BAR_PX,\n  CALL_TICK,\n  DISAGREES,\n  GENE_INK,\n  UNBACKED_TICK,\n  walkRowsKey,\n} from '@jbrowse/bandage-core/layout/walkRowDraw'\nimport { frequencyKey, nodeWidthPx } from '@jbrowse/bandage-core/nodeWidths'\nimport { referenceLabel } from '@jbrowse/bandage-core/reference'\nimport { RAMP_GRADIENT_STOPS } from '@jbrowse/bandage-core/referenceRampCss'\nimport {\n  LIFT_BACKDROP_CSS,\n  REFERENCE_RAMP_ALT_CSS,\n} from '@jbrowse/bandage-core/renderer/GeometryBuilder'\nimport { deviationInk } from '@jbrowse/bandage-core/tubeMap/deviations'\nimport {\n  FORWARD_READ_COLORS,\n  REVERSE_READ_COLORS,\n} from '@jbrowse/bandage-core/tubeMap/reads'\nimport { encodingStops } from '@jbrowse/bandage-core/walkEncoding'\nimport { fadedKey } from '@jbrowse/bandage-core/walkHighlight'\nimport { walkKey } from '@jbrowse/bandage-core/walkKey'\n\nimport { CALL_TOLERANCE } from './repeats/walkCalls'\nimport { PANEL_REFERENCE_TUBE } from './tubeMapPanels'\nimport { COLORED_BLOCKS, blockFill, blockLetter } from './walkRowBlocks'\n\nimport type { GraphPaneModel } from './model'\nimport type { KeySwatch } from '@jbrowse/bandage-core/layout/walkRowDraw'\nimport type { GraphNode } from '@jbrowse/bandage-core/types'\nimport type { LiftedWalk } from '@jbrowse/bandage-core/walkHighlight'\n\n// The legend as data, so the screen's panel and the exported figure's key\n// draw the same rows from one place\n\nexport const SWATCH_PX = 18\nconst BAR_PX = 32\n\n// LIFT_BACKDROP_CSS reads paler alone than faded strokes do where they\n// overlap, so the key samples it darker\nconst FADED_SWATCH = 'rgba(160, 160, 160, 0.45)'\nconst DELETION_INK = '#18181c'\n\nconst STRIP_SAMPLES = 6\nconst TUBE_SWATCH_PX = 7\nconst FOLD_TICK_BACKING = '#b8b8c0'\nconst WALK_ROW_SWATCH_PX = WALK_ROW_BAR_PX - 4\nconst LINK_INK = 'rgba(119, 119, 119, 0.85)'\nconst LINE_PX = 15\nconst CHIP_PX = 10\n\nexport interface Stop {\n  offset: number\n  color: string\n}\n\nexport type LegendSwatch =\n  | {\n      kind: 'fill'\n      stops: Stop[]\n      width?: number\n      height?: number\n      square?: boolean\n      // a hairline edge, so a pale colour still shows on the white key\n      edged?: true\n    }\n  // the reference strip, a band per lifted walk\n  | { kind: 'bands'; bands: Stop[][] }\n  | { kind: 'line'; color: string; dashed?: true }\n  | { kind: 'halo'; color: string }\n  | {\n      kind: 'outline'\n      color: string\n      stroke: number\n      radius: number\n      height: number\n    }\n  | { kind: 'overhang' }\n  | { kind: 'glyph'; char: string }\n  | { kind: 'tick'; color: string; height: number; backing?: string }\n  | { kind: 'bracket' }\n  | { kind: 'blank' }\n\n// A row with no swatch is a note on the drawing\nexport interface LegendRow {\n  key: string\n  label: string\n  swatch?: LegendSwatch\n  strong?: string\n  under?: string\n  title?: string\n  walk?: LiftedWalk\n  closesBubble?: true\n}\n\ninterface LegendSection {\n  testid: string\n  rows: LegendRow[]\n  group?: string\n  // the group's name, over the first of its sections\n  heading?: string\n  // set apart from the group above by a heading's gap, though it has none\n  spaced?: true\n}\n\nexport function swatchWidth(swatch: LegendSwatch) {\n  return swatch.kind === 'fill' ? (swatch.width ?? SWATCH_PX) : SWATCH_PX\n}\n\nexport const bandPx = (bands: readonly unknown[]) => (bands.length > 1 ? 3 : 4)\n\nexport function swatchHeight(swatch: LegendSwatch) {\n  switch (swatch.kind) {\n    case 'fill':\n      return swatch.height ?? 8\n    case 'bands':\n      return bandPx(swatch.bands) * swatch.bands.length\n    case 'line':\n      return 3\n    case 'halo':\n    case 'overhang':\n      return 10\n    case 'outline':\n    case 'tick':\n      return swatch.height\n    case 'glyph':\n      return 15\n    case 'bracket':\n      return 7\n    case 'blank':\n      return 0\n  }\n}\n\n// One column every swatch of a key sits in, so the words after them line up\nexport function swatchColumn(rows: readonly LegendRow[]) {\n  return rows.reduce(\n    (px, row) => (row.swatch ? Math.max(px, swatchWidth(row.swatch)) : px),\n    0,\n  )\n}\n\n// One pitch for every line of a key, roomy enough for its tallest swatch, so\n// rows sit evenly however their swatches differ\nexport function rowPitch(rows: readonly LegendRow[]) {\n  return rows.reduce(\n    (px, row) =>\n      row.swatch ? Math.max(px, Math.ceil(swatchHeight(row.swatch)) + 3) : px,\n    LINE_PX,\n  )\n}\n\nconst flat = (color: string): Stop[] => [{ offset: 0, color }]\n\n// A colour's key is a square chip, so it never reads as a thickness bar\nfunction fillRow(key: string, color: string, label: string): LegendRow {\n  return {\n    key,\n    label,\n    swatch: {\n      kind: 'fill',\n      stops: flat(color),\n      width: CHIP_PX,\n      height: CHIP_PX,\n      edged: true,\n    },\n  }\n}\n\n// hard-edged bands, a read taking one shade of its strand's palette\nfunction bandStops(colors: readonly string[]) {\n  return colors.flatMap((color, i) => [\n    { offset: i / colors.length, color },\n    { offset: (i + 1) / colors.length, color },\n  ])\n}\n\nfunction openBubbleRows(model: GraphPaneModel): LegendRow[] {\n  const open = model.openBubble\n  if (!open) {\n    return []\n  }\n  const halo = model.bubbleHalos.find(h => sameBubble(h.bubble, open))\n  return [\n    {\n      key: 'open',\n      label: `open: ${halo?.label ?? 'bubble'}`,\n      swatch: halo\n        ? { kind: 'halo', color: BUBBLE_KIND_COLORS[halo.kind] }\n        : { kind: 'blank' },\n      closesBubble: true,\n    },\n  ]\n}\n\n// Under lifted walks each lane states its own scale, and the rest is grey\nfunction rampRows(model: GraphPaneModel): LegendRow[] {\n  const domain = model.walkLift ? undefined : model.referenceRampDomain\n  if (!domain) {\n    return []\n  }\n  // a measured domain runs between node midpoints, which can fall on a half bp\n  const start = Math.round(domain.start)\n  const end = Math.round(domain.end)\n  const reference = model.graph ? referenceLabel(model.graph) : 'reference'\n  return [\n    {\n      key: 'ramp',\n      label: `position on ${reference}`,\n      swatch: { kind: 'fill', stops: RAMP_GRADIENT_STOPS, width: BAR_PX },\n      under: `${start.toLocaleString('en-US')}-${end.toLocaleString('en-US')} (${formatBp(end - start)})`,\n    },\n    ...(model.referenceRampDrawsOffReference\n      ? [fillRow('off', REFERENCE_RAMP_ALT_CSS, 'off the reference')]\n      : []),\n  ]\n}\n\n// The strip's own colours: a band per lifted walk in its lane's, else the\n// node scheme's, a few of its blocks in bp order rather than a rainbow it\n// does not draw\nfunction stripBands(model: GraphPaneModel): Stop[][] {\n  const lift = model.walkLift\n  if (lift) {\n    return lift.walks.map(w => encodingStops(w.encoding))\n  }\n  if (model.effectiveColorScheme === 'reference-position') {\n    return [RAMP_GRADIENT_STOPS]\n  }\n  const colors = model.referenceStripBlocks\n    .map(b => b.colors[0]!)\n    .filter((c, i, all) => c !== all[i - 1])\n  const n = Math.min(STRIP_SAMPLES, colors.length)\n  return [\n    n === 0\n      ? flat(LIFT_BACKDROP_CSS)\n      : Array.from({ length: n }, (_, i) => ({\n          offset: n > 1 ? i / (n - 1) : 0,\n          color:\n            colors[\n              n > 1 ? Math.round((i * (colors.length - 1)) / (n - 1)) : 0\n            ]!,\n        })),\n  ]\n}\n\nfunction stripRows(model: GraphPaneModel): LegendRow[] {\n  if (!model.referenceStripShown) {\n    return []\n  }\n  const rowPerWalk = (model.walkLift?.walks.length ?? 0) > 1\n  return [\n    {\n      key: 'strip',\n      label: `reference${rowPerWalk ? ', a row per walk' : ''}`,\n      swatch: { kind: 'bands', bands: stripBands(model) },\n    },\n    ...(model.referenceStripFaded\n      ? [\n          fillRow(\n            'strip-faded',\n            LIFT_BACKDROP_CSS,\n            model.walkLift\n              ? `reference not on ${rowPerWalk ? \"that row's walk\" : model.liftedWalksLabel}`\n              : 'reference outside the open bubble',\n          ),\n        ]\n      : []),\n    ...(model.referenceStripOverhangs\n      ? [\n          {\n            key: 'overhang',\n            label: 'graph runs past this edge',\n            swatch: { kind: 'overhang' } as const,\n          },\n        ]\n      : []),\n  ]\n}\n\n// One row per halo colour drawn, naming the kinds it stands for\nfunction haloRows(model: GraphPaneModel): LegendRow[] {\n  const kindsByColor = new Map<string, Set<string>>()\n  for (const h of model.bubbleHalos) {\n    if (!h.whole) {\n      const color = BUBBLE_KIND_COLORS[h.kind]\n      const kinds = kindsByColor.get(color) ?? new Set<string>()\n      kinds.add(BUBBLE_KIND_NAMES[h.kind])\n      kindsByColor.set(color, kinds)\n    }\n  }\n  return [...kindsByColor].map(([color, kinds]) => {\n    const names = [...kinds].join(' or ')\n    return {\n      key: `halo-${color}`,\n      label:\n        names === BUBBLE_KIND_NAMES.superbubble ? names : `${names} bubble`,\n      swatch: { kind: 'halo', color },\n    }\n  })\n}\n\nfunction deletionRows(model: GraphPaneModel): LegendRow[] {\n  const { graph } = model\n  return graph && dashedDeletions(model.deletions, model.walkLift).length > 0\n    ? [\n        {\n          key: 'deletion',\n          label: deletionKey(referenceLabel(graph)),\n          swatch: {\n            kind: 'line',\n            color: model.walkLift ? FADED_SWATCH : DELETION_INK,\n            dashed: true,\n          },\n        },\n      ]\n    : []\n}\n\nfunction thicknessRow(\n  key: string,\n  label: string,\n  px: number,\n  color: string,\n): LegendRow {\n  return {\n    key,\n    label,\n    swatch: { kind: 'fill', stops: flat(color), width: BAR_PX, height: px },\n  }\n}\n\nconst roundDepth = (depth: number) =>\n  depth >= 10 ? Math.round(depth) : Math.round(depth * 10) / 10\n\n// What a node's thickness counts, with bars as thick as the drawing makes\n// the thinnest, the mean and the thickest node\nfunction nodeWidthRows(model: GraphPaneModel): LegendRow[] {\n  const { graph, contigThickness: px, depthRange: range } = model\n  if (!graph || !model.drawsNodes || model.walkRowBars) {\n    return []\n  }\n  if (model.nodeWidth === 'frequency') {\n    const tagged = graph.nodes.some(n => n.frequency !== undefined)\n    return frequencyKey(px).map(({ label, widthPx }) =>\n      thicknessRow(\n        `width-${label}`,\n        tagged ? `AF ${label}` : `${label} of haplotypes`,\n        widthPx,\n        REFERENCE_RAMP_ALT_CSS,\n      ),\n    )\n  }\n  if (model.nodeWidth !== 'depth' || !range || range.min === range.max) {\n    return []\n  }\n  const walkCount = graph.paths?.length ?? 0\n  const walks = walkCount > 0\n  const depths = [\n    ...new Set(\n      [range.max, range.mean, range.min].map(walks ? Math.round : roundDepth),\n    ),\n  ]\n  // a walk looping through a repeat passes its nodes more than once, and\n  // each pass counts\n  const passes = depths[0]! > walkCount\n  const counted = (n: number) =>\n    passes\n      ? `${n.toLocaleString('en-US')} walk pass${n === 1 ? '' : 'es'}`\n      : `${n.toLocaleString('en-US')} walk${n === 1 ? '' : 's'}`\n  return depths.map(depth =>\n    thicknessRow(\n      `width-${depth}`,\n      walks ? counted(depth) : `depth ${depth.toLocaleString('en-US')}`,\n      nodeWidthPx({ depth } as GraphNode, px, 'depth', range.mean),\n      REFERENCE_RAMP_ALT_CSS,\n    ),\n  )\n}\n\nfunction linkWidthRows(model: GraphPaneModel): LegendRow[] {\n  const busiest = model.busiestLink\n  if (\n    !model.drawsNodes ||\n    model.walkRowBars ||\n    model.linkWidth !== 'walks' ||\n    busiest === 0\n  ) {\n    return []\n  }\n  const counts = busiest > 1 ? [busiest, 1] : [1]\n  return counts.map(n =>\n    thicknessRow(\n      `link-width-${n}`,\n      `${n.toLocaleString('en-US')} walk${n === 1 ? '' : 's'}`,\n      model.connectorThickness * edgeWidthFactor(n, busiest, 'walks'),\n      LINK_INK,\n    ),\n  )\n}\n\nfunction geneRows(model: GraphPaneModel): LegendRow[] {\n  return model.genePins.some(pin => pin.exonsByNode.length > 0)\n    ? [\n        {\n          key: 'exon',\n          label: 'exon',\n          swatch: {\n            kind: 'outline',\n            color: EXON_COLOR,\n            stroke: 2,\n            radius: 5,\n            height: 8,\n          },\n        },\n      ]\n    : []\n}\n\nfunction foldRows(model: GraphPaneModel): LegendRow[] {\n  const note = model.foldNote\n  return note ? [{ key: 'fold', label: note }] : []\n}\n\nfunction pathRows(model: GraphPaneModel): LegendRow[] {\n  return model.pathLegend.map(({ name, label, color }) => ({\n    key: `path-${name}`,\n    label,\n    swatch: { kind: 'line', color },\n  }))\n}\n\nfunction tubeRow(key: string, stops: Stop[], label: string): LegendRow {\n  return {\n    key,\n    label,\n    swatch: { kind: 'fill', stops, height: TUBE_SWATCH_PX, square: true },\n  }\n}\n\n// What a tube map draws that nothing else on screen explains, each listed\n// only while it applies\nexport function tubeMapRows(model: GraphPaneModel): LegendRow[] {\n  const {\n    roles,\n    haplotypeTube,\n    bundled,\n    values,\n    logWidths,\n    foldBp,\n    forwardReads,\n    reverseReads,\n    substitution,\n    insertion,\n    deletion,\n  } = model.tubeMapKeys\n  const reads = model.readsShown\n  const rows: LegendRow[] = []\n  if (values) {\n    rows.push(\n      tubeRow('value-reference', flat(PANEL_REFERENCE_TUBE), 'reference'),\n    )\n    for (const { value, color } of values) {\n      rows.push(tubeRow(`value-${value}`, flat(color), value))\n    }\n  }\n  if (roles) {\n    rows.push(\n      tubeRow('ref', flat(PANEL_REFERENCE_TUBE), 'reference'),\n      tubeRow(\n        'hap',\n        flat(haplotypeTube),\n        bundled ? 'shared route, \u00D7n haplotypes' : 'haplotype',\n      ),\n    )\n  }\n  if (forwardReads) {\n    rows.push(\n      tubeRow(\n        'fwd',\n        bandStops(FORWARD_READ_COLORS),\n        'read on the forward strand',\n      ),\n    )\n  }\n  if (reverseReads) {\n    rows.push(\n      tubeRow(\n        'rev',\n        bandStops(REVERSE_READ_COLORS),\n        'read on the reverse strand',\n      ),\n    )\n  }\n  if (reads && reads.shown < reads.total) {\n    rows.push({\n      key: 'sampled',\n      label: `${reads.shown.toLocaleString('en-US')} of ${reads.total.toLocaleString('en-US')} reads shown`,\n      swatch: { kind: 'blank' },\n    })\n  }\n  if (substitution) {\n    rows.push({\n      key: 'sub',\n      label: 'read mismatch',\n      swatch: { kind: 'glyph', char: 'A' },\n    })\n  }\n  if (insertion) {\n    rows.push({\n      key: 'ins',\n      label: 'read insertion',\n      swatch: { kind: 'glyph', char: '*' },\n    })\n  }\n  if (deletion) {\n    rows.push(tubeRow('del', flat('grey'), 'read deletion'))\n  }\n  if (foldBp !== undefined) {\n    rows.push({\n      key: 'tube-fold',\n      label: `haplotype variant < ${formatBp(foldBp)}`,\n      swatch: {\n        kind: 'tick',\n        color: deviationInk(),\n        height: TUBE_SWATCH_PX,\n        backing: FOLD_TICK_BACKING,\n      },\n    })\n  }\n  if (logWidths) {\n    rows.push({\n      key: 'log',\n      label: 'width grows with log of length',\n      swatch: { kind: 'bracket' },\n    })\n  }\n  return rows\n}\n\nexport function walkRowSwatch(swatch: KeySwatch): LegendSwatch {\n  return swatch.kind === 'gene'\n    ? {\n        kind: 'outline',\n        color: GENE_INK,\n        stroke: 1.5,\n        radius: 0,\n        height: WALK_ROW_SWATCH_PX,\n      }\n    : {\n        kind: 'fill',\n        stops:\n          swatch.kind === 'bar' && swatch.ramp\n            ? RAMP_GRADIENT_STOPS\n            : flat(swatch.fill),\n        height: swatch.kind === 'gap' ? swatch.px : WALK_ROW_SWATCH_PX,\n      }\n}\n\n// The shared blocks the rows draw: each coloured one by its letter, then one\n// row for the grey rest\nfunction blockRows(model: GraphPaneModel): LegendRow[] {\n  const present = new Set(model.sharedBlocks?.map(b => b.block))\n  const swatch = (block: number) => ({\n    kind: 'fill' as const,\n    stops: flat(blockFill(block)),\n    height: WALK_ROW_SWATCH_PX,\n  })\n  return [\n    ...[...present]\n      .filter(block => block < COLORED_BLOCKS)\n      .sort((a, b) => a - b)\n      .map(block => ({\n        key: `block-${block}`,\n        label: `${blockLetter(block)}: off the reference, walked by several rows`,\n        swatch: swatch(block),\n      })),\n    ...([...present].some(block => block >= COLORED_BLOCKS)\n      ? [\n          {\n            key: 'block-more',\n            label: 'more shared blocks',\n            swatch: swatch(COLORED_BLOCKS),\n          },\n        ]\n      : []),\n  ]\n}\n\n// The walk rows' bar colours, genes and ticks; each tick row appears once\n// the rows hold one, so a catalogue with no genotypes keeps the plain key\nfunction walkRowsRows(model: GraphPaneModel): LegendRow[] {\n  const bars = model.walkRowBars\n  if (!bars) {\n    return []\n  }\n  const calls = [bars.reference, ...bars.rows].flatMap(row => row.call ?? [])\n  const tick = (key: string, color: string, label: string): LegendRow => ({\n    key,\n    label,\n    swatch: { kind: 'tick', color, height: WALK_ROW_SWATCH_PX },\n  })\n  return [\n    ...walkRowsKey(bars, {\n      ramp: model.referenceRampDomain,\n      genes: model.walkRowGeneKey,\n      annotation: model.walkRowAnnotation,\n    }).map(entry => ({\n      key: `rows-${entry.label}`,\n      label: entry.label,\n      swatch: entry.note ? undefined : walkRowSwatch(entry.swatch),\n    })),\n    ...blockRows(model),\n    ...(calls.some(call => call.spanningReads !== 0)\n      ? [tick('call', CALL_TICK, 'allele length called for this walk')]\n      : []),\n    ...(calls.some(call => call.spanningReads === 0)\n      ? [tick('unbacked', UNBACKED_TICK, 'called with no read spanning it')]\n      : []),\n    ...(calls.some(call => call.agrees === false)\n      ? [\n          tick(\n            'disagrees',\n            DISAGREES,\n            `walk and call over ${Math.round(CALL_TOLERANCE * 100)}% apart`,\n          ),\n        ]\n      : []),\n  ]\n}\n\n// One lifted walk's key: a swatch, or a short bar of the scale its lane\n// shades by, then its name, with the scale's stretch under it\nexport function walkKeyRow(model: GraphPaneModel, walk: LiftedWalk): LegendRow {\n  const key = walkKey(walk, model.walkReference)\n  return {\n    key: `walk-${walk.name}`,\n    strong: model.walkLabel(walk.name),\n    label: key.delta + key.gaps + key.reversed,\n    swatch: {\n      kind: 'fill',\n      stops: encodingStops(walk.encoding),\n      width: key.shades ? BAR_PX : SWATCH_PX,\n    },\n    under: key.scale,\n    title: key.hover,\n    walk,\n  }\n}\n\n// The off-reference colour, where the lift paints it, and the faded rest.\n// rampRows draws no key while walks are lifted, so these rows name both.\nfunction fadedRows(model: GraphPaneModel, faded: string): LegendRow[] {\n  return [\n    ...(model.liftPaintsOffReference\n      ? [fillRow('lift-off', REFERENCE_RAMP_ALT_CSS, 'off the reference')]\n      : []),\n    fillRow('faded', FADED_SWATCH, faded),\n  ]\n}\n\n// Each lifted walk's key, then what the faded rest is\nfunction walkReadoutRows(model: GraphPaneModel): LegendRow[] {\n  const lift = model.walkLift\n  if (!lift || model.facetPanels) {\n    return []\n  }\n  const rows = lift.walks.map(w => walkKeyRow(model, w))\n  const faded = model.graph\n    ? fadedKey(model.graph, lift, model.liftedWalksLabel)\n    : `not on ${model.liftedWalksLabel}`\n  return [...rows, ...fadedRows(model, faded)]\n}\n\n// The faceted pane's one key line under its panels: each panel's title keys\n// its walk, so this keys only what every panel greys\nexport function facetKeyRows(model: GraphPaneModel): LegendRow[] {\n  const { graph, facetPanels } = model\n  if (!graph || !facetPanels) {\n    return []\n  }\n  const keys = new Set(\n    facetPanels.map(panel => fadedKey(graph, panel, \"the panel's walk\")),\n  )\n  return [\n    ...fadedRows(\n      model,\n      keys.size === 1 ? [...keys][0]! : \"not on the panel's walk\",\n    ),\n    ...deletionRows(model),\n  ]\n}\n\n// The keys in the order the panel stacks them, top first, each under its\n// group's heading once the key holds more than one group\nexport function legendSections(model: GraphPaneModel): LegendSection[] {\n  const sections: LegendSection[] = [\n    { testid: 'graph-open-bubble-legend', rows: openBubbleRows(model) },\n    { testid: 'graph-ramp-legend', rows: rampRows(model), group: 'Color' },\n    {\n      testid: 'graph-walk-readout',\n      rows: walkReadoutRows(model),\n      group: 'Walks',\n    },\n    {\n      testid: 'graph-width-legend',\n      rows: nodeWidthRows(model),\n      group: 'Node thickness',\n    },\n    {\n      testid: 'graph-link-width-legend',\n      rows: linkWidthRows(model),\n      group: 'Link thickness',\n    },\n    { testid: 'graph-halo-legend', rows: haloRows(model), group: 'Marks' },\n    {\n      testid: 'graph-deletion-legend',\n      rows: deletionRows(model),\n      group: 'Marks',\n    },\n    { testid: 'graph-gene-legend', rows: geneRows(model), group: 'Marks' },\n    { testid: 'graph-path-legend', rows: pathRows(model), group: 'Paths' },\n    {\n      testid: 'graph-tube-map-legend',\n      rows: tubeMapRows(model),\n      group: 'Tube map',\n    },\n    {\n      testid: 'graph-walk-rows-legend',\n      rows: walkRowsRows(model),\n      group: 'Walk rows',\n    },\n    {\n      testid: 'graph-reference-strip-legend',\n      rows: stripRows(model),\n      group: 'Top strip',\n    },\n    { testid: 'graph-fold-legend', rows: foldRows(model) },\n  ].filter(section => section.rows.length > 0)\n  const groups = new Set(sections.flatMap(section => section.group ?? []))\n  if (groups.size < 2) {\n    return sections\n  }\n  const headed = new Set<string>()\n  return sections.map((section, i) => {\n    const { group } = section\n    if (!group) {\n      return i === 0 ? section : { ...section, spaced: true as const }\n    }\n    if (headed.has(group)) {\n      return section\n    }\n    headed.add(group)\n    return { ...section, heading: group }\n  })\n}\n", "import { createElement, useId } from 'react'\nimport type { ReactNode } from 'react'\n\nimport type { El } from '@jbrowse/bandage-core/el'\n\n// SVG's attribute names as React's props: `class` is className, `data-` and\n// `aria-` keep their dashes, the rest are camel-cased (`stroke-width` is\n// strokeWidth)\nfunction propName(name: string) {\n  return name === 'class'\n    ? 'className'\n    : /^(data|aria)-/.test(name)\n      ? name\n      : name.replace(/-([a-z])/g, (_, c: string) => c.toUpperCase())\n}\n\nfunction toReact(node: El | string, key: number): ReactNode {\n  if (typeof node === 'string') {\n    return node\n  }\n  const props: Record<string, unknown> = { key }\n  for (const [name, value] of Object.entries(node.attrs)) {\n    if (value !== undefined) {\n      props[propName(name)] = value\n    }\n  }\n  return createElement(node.tag, props, node.children.map(toReact))\n}\n\n// A useId fit for an SVG id and for url(#\u2026)\nexport function useSvgId() {\n  return useId().replaceAll(/[^\\w-]/g, '')\n}\n\n// A core element tree as React elements\nexport default function ElTree({ el }: { el: El }) {\n  return toReact(el, 0)\n}\n", "import { rulerInk } from '@jbrowse/bandage-core/tubeMap/axis'\nimport { observer } from 'mobx-react'\n\nimport { useSvgId } from './ElTree'\nimport { SWATCH_PX, bandPx, swatchHeight, swatchWidth } from '../legendSections'\n\nimport type { LegendSwatch, Stop } from '../legendSections'\n\nconst EDGE_INK = 'rgba(0, 0, 0, 0.28)'\n\n// eslint-disable-next-line no-restricted-syntax -- drawn inside a frozen SVG figure\nfunction Gradient({\n  id,\n  x,\n  y,\n  stops,\n  width,\n  height,\n  square,\n  edged,\n}: {\n  id: string\n  x: number\n  y: number\n  stops: readonly Stop[]\n  width: number\n  height: number\n  square?: boolean\n  edged?: boolean\n}) {\n  // an edge's stroke sits half inside, so the chip keeps its size\n  const inset = edged ? 0.5 : 0\n  const rect = (fill: string) => (\n    <rect\n      x={x + inset}\n      y={y + inset}\n      width={width - inset * 2}\n      height={height - inset * 2}\n      rx={square ? 0 : 2}\n      fill={fill}\n      stroke={edged ? EDGE_INK : undefined}\n    />\n  )\n  return stops.length > 1 ? (\n    <>\n      <defs>\n        <linearGradient id={id}>\n          {stops.map((s, i) => (\n            <stop key={i} offset={s.offset} stopColor={s.color} />\n          ))}\n        </linearGradient>\n      </defs>\n      {rect(`url(#${id})`)}\n    </>\n  ) : (\n    rect(stops[0]!.color)\n  )\n}\n\n// A row's swatch with its left edge at x, centred on the row's text 5 px\n// above the baseline\nexport function SvgSwatch({\n  swatch,\n  x,\n  id,\n}: {\n  swatch: LegendSwatch\n  x: number\n  id: string\n}) {\n  const mid = -5\n  switch (swatch.kind) {\n    case 'fill': {\n      const height = swatchHeight(swatch)\n      return (\n        <Gradient\n          id={id}\n          x={x}\n          y={mid - height / 2}\n          stops={swatch.stops}\n          width={swatchWidth(swatch)}\n          height={height}\n          square={swatch.square}\n          edged={swatch.edged}\n        />\n      )\n    }\n    case 'bands': {\n      const band = bandPx(swatch.bands)\n      const top = mid - swatchHeight(swatch) / 2\n      return (\n        <>\n          {swatch.bands.map((stops, i) => (\n            <Gradient\n              key={i}\n              id={`${id}-${i}`}\n              x={x}\n              y={top + i * band}\n              stops={stops}\n              width={SWATCH_PX}\n              height={band}\n              square\n            />\n          ))}\n        </>\n      )\n    }\n    case 'line':\n      return swatch.dashed ? (\n        <line\n          x1={x + 1}\n          x2={x + SWATCH_PX}\n          y1={mid}\n          y2={mid}\n          stroke={swatch.color}\n          strokeWidth={3}\n          strokeDasharray=\"4 3\"\n        />\n      ) : (\n        <rect\n          x={x}\n          y={mid - 1.5}\n          width={SWATCH_PX}\n          height={3}\n          rx={2}\n          fill={swatch.color}\n        />\n      )\n    case 'halo':\n      return (\n        <line\n          x1={x + 5}\n          x2={x + 13}\n          y1={mid}\n          y2={mid}\n          stroke={swatch.color}\n          strokeOpacity={0.35}\n          strokeWidth={8}\n          strokeLinecap=\"round\"\n        />\n      )\n    case 'outline': {\n      const inset = swatch.stroke / 2\n      return (\n        <rect\n          x={x + inset}\n          y={mid - swatch.height / 2 + inset}\n          width={SWATCH_PX - swatch.stroke}\n          height={swatch.height - swatch.stroke}\n          rx={Math.max(0, swatch.radius - inset)}\n          fill=\"none\"\n          stroke={swatch.color}\n          strokeWidth={swatch.stroke}\n        />\n      )\n    }\n    case 'overhang':\n      return (\n        <path\n          transform={`translate(${x} ${mid - 5})`}\n          d=\"M0,5 L8,0 L8,10 Z M18,5 L10,0 L10,10 Z\"\n          fill=\"#18181c\"\n        />\n      )\n    case 'glyph':\n      return (\n        <text\n          x={x + SWATCH_PX / 2}\n          y={mid + 4}\n          textAnchor=\"middle\"\n          fontFamily=\"monospace\"\n          fontSize={12}\n          fill=\"currentColor\"\n        >\n          {swatch.char}\n        </text>\n      )\n    case 'tick': {\n      const y = mid - swatch.height / 2\n      return (\n        <>\n          {swatch.backing ? (\n            <rect\n              x={x}\n              y={y}\n              width={SWATCH_PX}\n              height={swatch.height}\n              fill={swatch.backing}\n            />\n          ) : null}\n          <rect\n            x={x + SWATCH_PX / 2 - 1}\n            y={y}\n            width={2}\n            height={swatch.height}\n            fill={swatch.color}\n          />\n        </>\n      )\n    }\n    case 'bracket':\n      return (\n        <path\n          transform={`translate(${x} ${mid - 3.5})`}\n          d={`M0.5,6 V1.5 H5.5 V6 M8.5,6 V1.5 H${SWATCH_PX - 0.5} V6`}\n          fill=\"none\"\n          stroke={rulerInk()}\n        />\n      )\n    case 'blank':\n      return null\n  }\n}\n\n// The same swatch on screen, in a box as tall as the swatch so the row\n// centres it on its words\nexport const LegendSwatchView = observer(function LegendSwatchView({\n  swatch,\n}: {\n  swatch: LegendSwatch\n}) {\n  const id = useSvgId()\n  const height = swatchHeight(swatch)\n  return (\n    <svg\n      width={swatchWidth(swatch)}\n      height={height}\n      overflow=\"visible\"\n      style={{ flex: 'none' }}\n    >\n      <g transform={`translate(0 ${height / 2 + 5})`}>\n        <SvgSwatch swatch={swatch} x={0} id={id} />\n      </g>\n    </svg>\n  )\n})\n", "// A key's section of the legend panel, and one row in it: a swatch beside its\n// words\nexport const legendBoxStyle = {\n  background: '#fff',\n  padding: '3px 6px',\n  fontSize: 11,\n  lineHeight: '15px',\n  whiteSpace: 'nowrap' as const,\n}\n\nexport const legendRowStyle = { display: 'flex', alignItems: 'center', gap: 5 }\n\n// A line with no swatch, such as what the drawing folded away\nexport const legendNoteStyle = { color: '#666' }\n\nexport const HEADING_INK = '#6b7479'\nexport const HEADING_GAP_PX = 4\n\n// A group's name over its rows, set apart by a gap unless it opens the key\nexport const legendHeadingStyle = {\n  color: HEADING_INK,\n  fontSize: 9.5,\n  fontWeight: 600,\n  letterSpacing: '0.06em',\n  textTransform: 'uppercase' as const,\n}\n", "import { useMemo } from 'react'\n\nimport {\n  exonOutlineTree,\n  exonStretches,\n} from '@jbrowse/bandage-core/genes/exonOutline'\nimport { computed } from 'mobx'\nimport { observer } from 'mobx-react'\n\nimport ElTree, { useSvgId } from './ElTree'\nimport { PaneSvgLayer } from './PaneLayer'\n\nimport type { GraphPaneModel } from '../model'\n\n// The session's genes drawn onto the graph: each exon outlined round its\n// stretch of node, as core's exonOutlineTree draws it for every host, moved by\n// the same transform the halos use. Their names are LabelLayer's.\n\nconst GenePins = observer(function GenePins({\n  model,\n}: {\n  model: GraphPaneModel\n}) {\n  const id = `exon-outline-${useSvgId()}`\n  // in layout units, so a pan frame reuses them and only moves the transform\n  const stretches = useMemo(\n    () =>\n      computed(() => {\n        const { genePins, walkLift } = model\n        // an open bubble rings only its own exons\n        const focus = walkLift ? undefined : model.openBubbleFocus\n        const pins = focus\n          ? genePins.map(pin => ({\n              ...pin,\n              exonsByNode: pin.exonsByNode.filter(e =>\n                focus.nodeIds.has(e.nodeId),\n              ),\n            }))\n          : genePins\n        return exonStretches(pins, model.nodeInk.halfWidthPx, walkLift)\n      }),\n    [model],\n  )\n  const { scaleX, scaleY, translateX, translateY, paneWidth, canvasHeight } =\n    model\n  const tree = exonOutlineTree(stretches.get(), {\n    id,\n    width: paneWidth,\n    height: canvasHeight,\n    transform: `translate(${translateX} ${translateY}) scale(${scaleX} ${scaleY})`,\n  })\n  return tree ? (\n    <PaneSvgLayer model={model} zIndex={2} testId=\"graph-gene-pins\">\n      <ElTree el={tree} />\n    </PaneSvgLayer>\n  ) : null\n})\n\nexport default GenePins\n", "import { LABEL_PAD, LABEL_PX } from '@jbrowse/bandage-core/overlayLabels'\nimport { observer } from 'mobx-react'\n\n// A chip's box, its text's baseline at y and centred on x\nfunction chipBox(x: number, y: number, w: number) {\n  return {\n    x: x - w / 2,\n    y: y - LABEL_PX - LABEL_PAD + 2,\n    width: w,\n    height: LABEL_PX + LABEL_PAD * 2 - 2,\n  }\n}\n\nexport function inChip(\n  chip: { x: number; y: number; w: number },\n  px: number,\n  py: number,\n) {\n  const box = chipBox(chip.x, chip.y, chip.w)\n  return (\n    px >= box.x &&\n    px <= box.x + box.width &&\n    py >= box.y &&\n    py <= box.y + box.height\n  )\n}\n\n// One label on an overlay: a white chip with a coloured edge and text. A note\n// follows the text in plain type. A chip takes the pointer only with a\n// handler, so its title shows only then.\nexport default observer(function LabelChip({\n  x,\n  y,\n  w,\n  text,\n  note,\n  color,\n  edge = color,\n  italic,\n  dimmed,\n  title,\n  testId,\n  onClick,\n  onHover,\n}: {\n  x: number\n  y: number\n  w: number\n  text: string\n  note?: string\n  color: string\n  edge?: string\n  italic?: boolean\n  dimmed?: boolean\n  title?: string\n  testId?: string\n  onClick?: () => void\n  onHover?: (hovered: boolean) => void\n}) {\n  return (\n    <g\n      style={{\n        pointerEvents: onClick || onHover ? 'auto' : 'none',\n        cursor: onClick ? 'pointer' : undefined,\n        opacity: dimmed ? 0.35 : 1,\n      }}\n      data-testid={testId}\n      onClick={onClick}\n      onMouseEnter={() => {\n        onHover?.(true)\n      }}\n      onMouseLeave={() => {\n        onHover?.(false)\n      }}\n      // a clickable chip is a button to the keyboard too\n      {...(onClick && {\n        role: 'button',\n        tabIndex: 0,\n        'aria-label': (title ?? text).replaceAll('\\n', ', '),\n        onKeyDown: (e: React.KeyboardEvent) => {\n          if (e.key === 'Enter' || e.key === ' ') {\n            e.preventDefault()\n            onClick()\n          }\n        },\n        onFocus: () => {\n          onHover?.(true)\n        },\n        onBlur: () => {\n          onHover?.(false)\n        },\n      })}\n    >\n      {title ? <title>{title}</title> : null}\n      <rect\n        {...chipBox(x, y, w)}\n        rx={3}\n        fill=\"rgba(255,255,255,0.85)\"\n        stroke={edge}\n        strokeWidth={1}\n      />\n      <text\n        x={x}\n        y={y}\n        fontSize={LABEL_PX}\n        fontFamily=\"sans-serif\"\n        fontStyle={italic ? 'italic' : undefined}\n        fontWeight={italic ? 600 : undefined}\n        fill={color}\n        textAnchor=\"middle\"\n      >\n        {text}\n        {note ? (\n          <tspan fontStyle=\"normal\" fontWeight=\"normal\">\n            {note}\n          </tspan>\n        ) : null}\n      </text>\n    </g>\n  )\n})\n", "import { bubbleKey, sameBubble } from '@jbrowse/bandage-core/bubbles/bubbleLine'\nimport { BUBBLE_KIND_COLORS } from '@jbrowse/bandage-core/bubbles/classifyBubble'\nimport { EXON_COLOR } from '@jbrowse/bandage-core/genes/exonOutline'\nimport { geneCoverageNote, geneLeader } from '@jbrowse/bandage-core/labelLayout'\nimport { labelWidth } from '@jbrowse/bandage-core/overlayLabels'\nimport { isAlive } from '@jbrowse/mobx-state-tree'\nimport { observer } from 'mobx-react'\n\nimport LabelChip, { inChip } from './LabelChip'\nimport { PaneSvgLayer } from './PaneLayer'\n\nimport type { GraphPaneModel } from '../model'\nimport type { BubbleHalo } from '@jbrowse/bandage-core/bubbles/bubbleHalos'\nimport type { LabelLayout } from '@jbrowse/bandage-core/labelLayout'\n\n// Every chip drawn over the graph, above all of its ink: bubble names and gene\n// names on their pins. `overlayLabels` has placed\n// them against each other and against the row labels already.\n\nconst GENE_INK = '#1c1c22'\nconst TICK_PX = 9\nconst TICK_WIDTH = 3\n\n// What the gene chip under a point reads out, for the hover tooltip: those\n// chips leave the pointer to the canvas, so a drag can start on one\nexport function chipReadoutAt(\n  { genes }: Pick<LabelLayout, 'genes'>,\n  px: number,\n  py: number,\n) {\n  const pin = genes.find(chip => inChip(chip, px, py))?.item\n  if (!pin) {\n    return undefined\n  }\n  const { gene } = pin\n  const note = geneCoverageNote(pin)\n  return {\n    label: gene.name,\n    readout: `${gene.refName}:${gene.start.toLocaleString()}-${gene.end.toLocaleString()}${note ? `, ${note} in the cut` : ''}`,\n  }\n}\n\nconst LabelLayer = observer(function LabelLayer({\n  model,\n}: {\n  model: GraphPaneModel\n}) {\n  const { bubbles, genes, ticks } = model.overlayLabels\n  if (bubbles.length + genes.length + ticks.length === 0) {\n    return null\n  }\n  const { scaleY, translateY, contigThickness, hoveredBubble } = model\n  const hoveredTick = hoveredBubble\n    ? ticks.find(t => sameBubble(t.item.bubble, hoveredBubble))\n    : undefined\n  const tickAt = (target: EventTarget) =>\n    ticks[Number((target as Element).getAttribute('data-tick'))]\n  const dimmedBubble = (h: BubbleHalo) => model.bubbleFaded(h)\n  const isOpen = (h: BubbleHalo) => model.bubbleIsOpen(h.bubble)\n\n  return (\n    <PaneSvgLayer\n      model={model}\n      zIndex={3}\n      testId=\"graph-label-layer\"\n      pansWithDrawing\n    >\n      <g\n        data-testid=\"graph-bubble-ticks\"\n        onClick={e => {\n          const tick = tickAt(e.target)\n          if (tick) {\n            model.toggleBubble(tick.item.bubble)\n          }\n        }}\n        onMouseOver={e => {\n          const tick = tickAt(e.target)\n          if (tick) {\n            model.setHoveredBubble(tick.item.bubble)\n          }\n        }}\n        // a leave also fires as the view closing it unmounts the tick\n        onMouseOut={() => {\n          if (isAlive(model)) {\n            model.setHoveredBubble(null)\n          }\n        }}\n        onFocus={e => {\n          const tick = tickAt(e.target)\n          if (tick) {\n            model.setHoveredBubble(tick.item.bubble)\n          }\n        }}\n        onBlur={() => {\n          if (isAlive(model)) {\n            model.setHoveredBubble(null)\n          }\n        }}\n        onKeyDown={e => {\n          const tick = tickAt(e.target)\n          if (tick && (e.key === 'Enter' || e.key === ' ')) {\n            e.preventDefault()\n            model.toggleBubble(tick.item.bubble)\n          }\n        }}\n      >\n        {ticks.map(({ item: h, x, y }, i) => (\n          <rect\n            key={bubbleKey(h.bubble)}\n            data-tick={i}\n            role=\"button\"\n            tabIndex={0}\n            aria-label={`${h.label}, ${isOpen(h) ? 'close' : 'open'} bubble`}\n            x={x - TICK_WIDTH / 2}\n            y={y - TICK_PX}\n            width={TICK_WIDTH}\n            height={TICK_PX}\n            rx={TICK_WIDTH / 2}\n            fill={BUBBLE_KIND_COLORS[h.kind]}\n            opacity={dimmedBubble(h) ? 0.35 : 1}\n            style={{ pointerEvents: 'all', cursor: 'pointer' }}\n          />\n        ))}\n      </g>\n      {genes.map(({ item: pin, x, y, w, text }) => {\n        const { gene } = pin\n        const { y1, y2 } = geneLeader(\n          { y },\n          pin.at.y * scaleY + translateY,\n          contigThickness,\n        )\n        return (\n          <g key={`${gene.name}-${gene.start}`}>\n            <line\n              x1={x}\n              x2={x}\n              y1={y1}\n              y2={y2}\n              stroke={GENE_INK}\n              strokeWidth={0.8}\n              strokeOpacity={0.6}\n            />\n            <LabelChip\n              x={x}\n              y={y}\n              w={w}\n              text={gene.name}\n              note={text.slice(gene.name.length) || undefined}\n              color={GENE_INK}\n              edge={EXON_COLOR}\n              italic\n              testId=\"graph-gene-pin-label\"\n            />\n          </g>\n        )\n      })}\n      {bubbles.map(({ item: h, x, y, w, text }) => (\n        <LabelChip\n          key={bubbleKey(h.bubble)}\n          x={x}\n          y={y}\n          w={w}\n          text={text}\n          color={BUBBLE_KIND_COLORS[h.kind]}\n          dimmed={dimmedBubble(h)}\n          title={`${h.label}\\n${h.bubble.segmentCount} segments${h.bubble.covering ? '' : isOpen(h) ? ' \u00B7 click to close' : ' \u00B7 click to open'}`}\n          testId=\"graph-bubble-halo-label\"\n          // the bubble the drawing is would open into this same drawing\n          onClick={\n            h.bubble.covering\n              ? undefined\n              : () => {\n                  model.toggleBubble(h.bubble)\n                }\n          }\n          // a leave also fires as the view closing it unmounts the chip\n          onHover={hovered => {\n            if (isAlive(model)) {\n              model.setHoveredBubble(hovered ? h.bubble : null)\n            }\n          }}\n        />\n      ))}\n      {hoveredTick ? (\n        <LabelChip\n          x={hoveredTick.x}\n          y={hoveredTick.y - TICK_PX - 4}\n          w={labelWidth(hoveredTick.item.label)}\n          text={hoveredTick.item.label}\n          color={BUBBLE_KIND_COLORS[hoveredTick.item.kind]}\n          testId=\"graph-bubble-tick-label\"\n        />\n      ) : null}\n    </PaneSvgLayer>\n  )\n})\n\nexport default LabelLayer\n", "import { useCallback } from 'react'\n\nimport { drawReferenceStrip } from '@jbrowse/bandage-core/referenceStrip'\nimport { observer } from 'mobx-react'\n\nimport { PaneOverlayCanvas } from './PaneLayer'\n\nimport type { GraphPaneModel } from '../model'\n\n// Each reference segment at its bp in the linear view, onto the pane's\n// canvas or the linear view's SVG export\nexport function paintReferenceStrip(\n  ctx: CanvasRenderingContext2D,\n  model: GraphPaneModel,\n  {\n    lit,\n    dpr,\n  }: { lit: GraphPaneModel['referenceStripLit'] | undefined; dpr: number },\n) {\n  const frame = model.hostBpFrame\n  if (frame) {\n    drawReferenceStrip(ctx, model.referenceStripBlocks, frame, {\n      width: model.paneWidth,\n      lit,\n      dpr,\n    })\n  }\n}\n\n// Each reference segment at its bp in the linear view, over a drawing that\n// has no bp axis of its own. Repainted by an autorun, so a pan in the linear\n// view moves the strip in the same frame as its other tracks.\nconst ReferenceStripOverlay = observer(function ReferenceStripOverlay({\n  model,\n}: {\n  model: GraphPaneModel\n}) {\n  const paint = useCallback(\n    (ctx: CanvasRenderingContext2D, dpr: number) => {\n      paintReferenceStrip(ctx, model, { lit: model.referenceStripLit, dpr })\n    },\n    [model],\n  )\n  return (\n    <PaneOverlayCanvas\n      model={model}\n      zIndex={5}\n      shown={model.referenceStripShown}\n      testId=\"graph-reference-strip\"\n      paint={paint}\n    />\n  )\n})\n\nexport default ReferenceStripOverlay\n", "import { useCallback } from 'react'\n\nimport { drawTubeMapRuler } from '@jbrowse/bandage-core/tubeMap/axis'\nimport { drawTubeMapConnectors } from '@jbrowse/bandage-core/tubeMap/connectors'\nimport { drawDeviationMarks } from '@jbrowse/bandage-core/tubeMap/deviations'\nimport { drawTubeMap } from '@jbrowse/bandage-core/tubeMap/draw'\nimport { drawTubeMapGenes } from '@jbrowse/bandage-core/tubeMap/genes'\nimport { observer } from 'mobx-react'\n\nimport { PaneOverlayCanvas } from './PaneLayer'\nimport {\n  PANEL_TITLE_FONT,\n  drawBundleCounts,\n  drawSqueezedLengths,\n} from '../tubeMapPanels'\n\n// variants folded into a box mark texture under a panel's routes\nconst PANEL_TICK_ALPHA = 0.45\n\nimport type { GraphPaneModel } from '../model'\n\n// The tubes, their connectors, genes and ruler, onto a canvas sized to the\n// pane or onto the linear view's SVG export\nexport function paintTubeMap(\n  ctx: CanvasRenderingContext2D,\n  model: GraphPaneModel,\n  { highlightNode }: { highlightNode: string | null },\n) {\n  const picture = model.tubeMapPicture\n  const frame = model.tubeMapFrame\n  if (!picture || !frame) {\n    return\n  }\n  const width = model.paneWidth\n  const panels = model.tubeMapPanelViews\n  if (panels) {\n    paintPanels(ctx, model, panels, highlightNode)\n    return\n  }\n  const tubeFrame = {\n    ...frame,\n    width,\n    highlightNode,\n    tubeColors: model.tubeMapTubeColors,\n    nodeColors: model.tubeMapNodeColors,\n  }\n  drawTubeMap(ctx, picture, tubeFrame)\n  const drawn = model.layoutResult?.tubeMap\n  if (drawn) {\n    drawBundleCounts(ctx, picture, drawn.graph, tubeFrame)\n    drawSqueezedLengths(ctx, drawn, tubeFrame)\n  }\n  drawDeviationMarks(ctx, model.tubeMapDeviations, tubeFrame)\n  drawTubeMapConnectors(\n    ctx,\n    model.tubeMapConnectors,\n    model.connectorZoneBottom,\n    tubeFrame,\n  )\n  const { bounds } = picture\n  drawTubeMapGenes(ctx, model.tubeMapGenes, tubeFrame, frame.y(bounds.minY) - 2)\n  const boxes = model.tubeMapRulerBoxes\n  if (boxes) {\n    drawTubeMapRuler(\n      ctx,\n      boxes,\n      tubeFrame,\n      frame.y(bounds.maxY) + 4,\n      model.layoutResult?.referenceAxis,\n    )\n  }\n}\n\n// Each panel of a split tube map under a rule and its title, which the canvas\n// draws so a figure's SVG carries them\nfunction paintPanels(\n  ctx: CanvasRenderingContext2D,\n  model: GraphPaneModel,\n  panels: NonNullable<GraphPaneModel['tubeMapPanelViews']>,\n  highlightNode: string | null,\n) {\n  const width = model.paneWidth\n  for (const p of panels) {\n    if (p.bottom < 0 || p.titleTop > model.canvasHeight) {\n      continue\n    }\n    const tubeFrame = {\n      ...p.frame,\n      width,\n      highlightNode,\n      tubeColors: p.tubeColors,\n      nodeColors: p.nodeColors,\n    }\n    drawTubeMap(ctx, p.picture, tubeFrame)\n    drawBundleCounts(ctx, p.picture, p.panel.result.tubeMap.graph, tubeFrame)\n    drawSqueezedLengths(ctx, p.panel.result.tubeMap, tubeFrame)\n    ctx.globalAlpha = PANEL_TICK_ALPHA\n    drawDeviationMarks(ctx, p.deviations, tubeFrame)\n    ctx.globalAlpha = 1\n    ctx.strokeStyle = 'rgba(0,0,0,0.15)'\n    ctx.lineWidth = 1\n    ctx.beginPath()\n    ctx.moveTo(0, Math.round(p.titleTop) + 0.5)\n    ctx.lineTo(width, Math.round(p.titleTop) + 0.5)\n    ctx.stroke()\n    ctx.font = PANEL_TITLE_FONT\n    ctx.textAlign = 'left'\n    ctx.textBaseline = 'top'\n    ctx.fillStyle = 'rgba(0,0,0,0.85)'\n    ctx.fillText(p.label, 6, p.titleTop + 4)\n  }\n  const last = panels.at(-1)\n  const boxes = model.tubeMapPanelRulerBoxes\n  if (last && boxes) {\n    drawTubeMapRuler(\n      ctx,\n      boxes,\n      { ...last.frame, width },\n      last.bottom + 4,\n      true,\n    )\n  }\n}\n\n// The tube map's ink, over the canvas, which draws nothing under a tube map\n// layout. Above the tubes go the session's genes in a view of its own, or in\n// a linear view the bands tying each reference box to its bp there; under\n// them a reference ruler, unless the linear view's is already the axis.\n// Repainted by an autorun on every change of transform, so a pan in the linear\n// view above moves the tubes in the same frame as its other tracks.\nconst TubeMapOverlay = observer(function TubeMapOverlay({\n  model,\n}: {\n  model: GraphPaneModel\n}) {\n  const paint = useCallback(\n    (ctx: CanvasRenderingContext2D) => {\n      paintTubeMap(ctx, model, { highlightNode: model.selectedNode })\n    },\n    [model],\n  )\n  return (\n    <PaneOverlayCanvas\n      model={model}\n      zIndex={1}\n      shown={!!model.tubeMapPicture}\n      testId=\"graph-tube-map\"\n      paint={paint}\n    />\n  )\n})\n\nexport default TubeMapOverlay\n", "const host = JBrowseExports[\"@jbrowse/render-core/marks\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/render-core/marks\" + \"' to plugins: \" + \"GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\")\n        },\n        { jbrowseHostMissing: name },\n      )\nexport const BandPen = /* @__PURE__ */ read(\"BandPen\")\nexport const CONNECTOR_ARROW = /* @__PURE__ */ read(\"CONNECTOR_ARROW\")\nexport const CONNECTOR_BOW = /* @__PURE__ */ read(\"CONNECTOR_BOW\")\nexport const CONNECTOR_DASHED = /* @__PURE__ */ read(\"CONNECTOR_DASHED\")\nexport const CONNECTOR_LEADING_2 = /* @__PURE__ */ read(\"CONNECTOR_LEADING_2\")\nexport const CONNECTOR_MAX_REACH_PX = /* @__PURE__ */ read(\"CONNECTOR_MAX_REACH_PX\")\nexport const CONNECTOR_MINUS_1 = /* @__PURE__ */ read(\"CONNECTOR_MINUS_1\")\nexport const CONNECTOR_MINUS_2 = /* @__PURE__ */ read(\"CONNECTOR_MINUS_2\")\nexport const CONNECTOR_STRAIGHT = /* @__PURE__ */ read(\"CONNECTOR_STRAIGHT\")\nexport const HIDDEN_ROW = /* @__PURE__ */ read(\"HIDDEN_ROW\")\nexport const LINK_ELSEWHERE = /* @__PURE__ */ read(\"LINK_ELSEWHERE\")\nexport const LINK_NO_REGION = /* @__PURE__ */ read(\"LINK_NO_REGION\")\nexport const NO_ROW_COLOR = /* @__PURE__ */ read(\"NO_ROW_COLOR\")\nexport const RAMP_LINE_BANDS = /* @__PURE__ */ read(\"RAMP_LINE_BANDS\")\nexport const RAMP_NOT_A_NUMBER_COLOR = /* @__PURE__ */ read(\"RAMP_NOT_A_NUMBER_COLOR\")\nexport const RAMP_NO_VALUE_BITS = /* @__PURE__ */ read(\"RAMP_NO_VALUE_BITS\")\nexport const RAMP_NO_VALUE_COLOR = /* @__PURE__ */ read(\"RAMP_NO_VALUE_COLOR\")\nexport const RowKeys = /* @__PURE__ */ read(\"RowKeys\")\nexport const abgrToCssRgba = /* @__PURE__ */ read(\"abgrToCssRgba\")\nexport const appendGlyph = /* @__PURE__ */ read(\"appendGlyph\")\nexport const backToFront = /* @__PURE__ */ read(\"backToFront\")\nexport const barMark = /* @__PURE__ */ read(\"barMark\")\nexport const buildRowTable = /* @__PURE__ */ read(\"buildRowTable\")\nexport const connectorEnds = /* @__PURE__ */ read(\"connectorEnds\")\nexport const connectorMark = /* @__PURE__ */ read(\"connectorMark\")\nexport const defineMark = /* @__PURE__ */ read(\"defineMark\")\nexport const ellipseDistance = /* @__PURE__ */ read(\"ellipseDistance\")\nexport const ellipseNearest = /* @__PURE__ */ read(\"ellipseNearest\")\nexport const inkOfInstances = /* @__PURE__ */ read(\"inkOfInstances\")\nexport const instanceColor = /* @__PURE__ */ read(\"instanceColor\")\nexport const isThreshold = /* @__PURE__ */ read(\"isThreshold\")\nexport const keepRampValues = /* @__PURE__ */ read(\"keepRampValues\")\nexport const keySlot = /* @__PURE__ */ read(\"keySlot\")\nexport const lineCenterMark = /* @__PURE__ */ read(\"lineCenterMark\")\nexport const lineMarkOf = /* @__PURE__ */ read(\"lineMarkOf\")\nexport const lineStepMark = /* @__PURE__ */ read(\"lineStepMark\")\nexport const linkApex = /* @__PURE__ */ read(\"linkApex\")\nexport const linkFeet = /* @__PURE__ */ read(\"linkFeet\")\nexport const linkInstance = /* @__PURE__ */ read(\"linkInstance\")\nexport const linkLabelAnchor = /* @__PURE__ */ read(\"linkLabelAnchor\")\nexport const linkMark = /* @__PURE__ */ read(\"linkMark\")\nexport const makeAbgrFill = /* @__PURE__ */ read(\"makeAbgrFill\")\nexport const nearestMarkHit = /* @__PURE__ */ read(\"nearestMarkHit\")\nexport const paintColors = /* @__PURE__ */ read(\"paintColors\")\nexport const paintMarkBlocks = /* @__PURE__ */ read(\"paintMarkBlocks\")\nexport const planMarks = /* @__PURE__ */ read(\"planMarks\")\nexport const pointInsetPx = /* @__PURE__ */ read(\"pointInsetPx\")\nexport const pointInstance = /* @__PURE__ */ read(\"pointInstance\")\nexport const pointMark = /* @__PURE__ */ read(\"pointMark\")\nexport const rampAsThreshold = /* @__PURE__ */ read(\"rampAsThreshold\")\nexport const rampUniforms = /* @__PURE__ */ read(\"rampUniforms\")\nexport const rampValueBits = /* @__PURE__ */ read(\"rampValueBits\")\nexport const recordPath = /* @__PURE__ */ read(\"recordPath\")\nexport const rowColor = /* @__PURE__ */ read(\"rowColor\")\nexport const rowSlot = /* @__PURE__ */ read(\"rowSlot\")\nexport const rowSpanIndex = /* @__PURE__ */ read(\"rowSpanIndex\")\nexport const rowTableKeys = /* @__PURE__ */ read(\"rowTableKeys\")\nexport const rowTableTextures = /* @__PURE__ */ read(\"rowTableTextures\")\nexport const ruleMark = /* @__PURE__ */ read(\"ruleMark\")\nexport const shiftInk = /* @__PURE__ */ read(\"shiftInk\")\nexport const spanMark = /* @__PURE__ */ read(\"spanMark\")\nexport const spansInRow = /* @__PURE__ */ read(\"spansInRow\")\nexport const thresholdBandOf = /* @__PURE__ */ read(\"thresholdBandOf\")\nexport const valueWindow = /* @__PURE__ */ read(\"valueWindow\")\nexport const withPassId = /* @__PURE__ */ read(\"withPassId\")\nexport default host && host.__esModule ? host.default : host", "import {\n  GAP_PX,\n  MISSING_PX,\n  coalesceRuns,\n  gapStyle,\n  runPaint,\n} from '@jbrowse/bandage-core/layout/walkRowDraw'\nimport { hslToRgb } from '@jbrowse/bandage-core/renderer/GeometryBuilder'\nimport { packAbgr } from '@jbrowse/bandage-core/renderer/colorBits'\nimport { spanMark } from '@jbrowse/render-core/marks'\n\nimport type { WalkRow, WalkRun } from '@jbrowse/bandage-core/layout/walkRows'\nimport type { MarkContext2D, SpanChannels } from '@jbrowse/render-core/marks'\n\ntype Rgb = [number, number, number]\n\ntype SpanKind = 'bars' | 'gaps' | 'hairlines'\n\nconst SPAN_KINDS: SpanKind[] = ['bars', 'gaps', 'hairlines']\n\n// the numbers in a CSS colour, `1e-7` among them, as `${hue}` may print one\nconst cssNumbers = (css: string) =>\n  (css.match(/-?\\d*\\.?\\d+(?:e[-+]?\\d+)?/gi) ?? []).map(Number)\n\n// The colours runPaint writes: `#rrggbb`, `rgb(r, g, b)` and\n// `hsl(h, s%, l%)`\nexport function cssRgb(css: string): Rgb {\n  if (css.startsWith('#')) {\n    const v = Number.parseInt(css.slice(1), 16)\n    return [(v >> 16) & 0xff, (v >> 8) & 0xff, v & 0xff]\n  }\n  const [a = 0, b = 0, c = 0] = cssNumbers(css)\n  return css.startsWith('hsl')\n    ? (hslToRgb(a, b / 100, c / 100).map(v => v * 255) as Rgb)\n    : [a, b, c]\n}\n\nconst abgr = ([r, g, b]: Rgb) =>\n  packAbgr(Math.round(r), Math.round(g), Math.round(b), 255)\n\nconst packCss = (css: string) => abgr(cssRgb(css))\n\n// packCss remembering each colour it packed, for one cut's runs\nfunction cssPacker() {\n  const packed = new Map<string, number>()\n  return (css: string) => {\n    let v = packed.get(css)\n    if (v === undefined) {\n      v = packCss(css)\n      packed.set(css, v)\n    }\n    return v\n  }\n}\n\n/**\n * A run as the pieces it paints in, each `[start, end, abgr]` in bp along\n * the row: one for a solid fill, and for a gradient one per pixel or per\n * degree of hue, whichever is fewer, coloured as the SVG gradient through\n * the same stops colours its middle\n */\nexport function runPieces(\n  run: WalkRun,\n  ramp: { start: number; end: number } | undefined,\n  pxPerBp: number,\n  pack = packCss,\n): [number, number, number][] {\n  const end = run.start + run.bp\n  const paint = runPaint(run, ramp)\n  if ('fill' in paint) {\n    return [[run.start, end, pack(paint.fill)]]\n  }\n  const stops = paint.stops.map(cssRgb)\n  const hues = paint.stops.map(css => cssNumbers(css)[0]!)\n  const hueSpan = Math.abs(hues.at(-1)! - hues[0]!)\n  const n = Math.max(\n    1,\n    Math.min(Math.ceil(run.bp * pxPerBp), Math.ceil(hueSpan), run.bp),\n  )\n  const pieces: [number, number, number][] = []\n  for (let k = 0; k < n; k++) {\n    const t = ((k + 0.5) / n) * (stops.length - 1)\n    const i = Math.min(Math.floor(t), stops.length - 2)\n    const a = stops[i]!\n    const b = stops[i + 1]!\n    const f = t - i\n    pieces.push([\n      Math.round(run.start + (run.bp * k) / n),\n      Math.round(run.start + (run.bp * (k + 1)) / n),\n      abgr([0, 1, 2].map(j => a[j]! + (b[j]! - a[j]!) * f) as Rgb),\n    ])\n  }\n  return pieces\n}\n\ntype ColoredSpans = SpanChannels & { color: Uint32Array }\n\nexport interface WalkRowSpans {\n  bars: ColoredSpans\n  gaps: ColoredSpans\n  // gaps of bases the graph lacks, which draw as a hairline\n  hairlines: ColoredSpans\n  // where each drawn row's spans start in `bars`, `gaps` and `hairlines`\n  barRows: Uint32Array\n  gapRows: Uint32Array\n  hairlineRows: Uint32Array\n  // the furthest any span reaches along its row, in bp, and at least 1\n  longest: number\n}\n\nfunction channels(capacity: number) {\n  return {\n    x: new Uint32Array(capacity),\n    x2: new Uint32Array(capacity),\n    row: new Uint32Array(capacity),\n    color: new Uint32Array(capacity),\n    count: 0,\n  }\n}\n\nfunction slice(c: ColoredSpans, a: number, b: number) {\n  return {\n    x: c.x.subarray(a, b),\n    x2: c.x2.subarray(a, b),\n    row: c.row.subarray(a, b),\n    color: c.color.subarray(a, b),\n    count: b - a,\n  }\n}\n\nconst kindOf = (run: WalkRun): SpanKind =>\n  !run.gap\n    ? 'bars'\n    : gapStyle(run.cause).px === MISSING_PX\n      ? 'hairlines'\n      : 'gaps'\n\n/**\n * Each row's runs as `walkRowsTree` coalesces and colours them at\n * `pxPerBp`, as span channels: `x`/`x2` in bp along the row, `row` its index\n * among `rows`. Gaps go apart, since they draw thinner, and gaps of bases the\n * graph lacks apart again, as a hairline.\n */\nexport function walkRowSpans(\n  rows: WalkRow[],\n  pxPerBp: number,\n  ramp?: { start: number; end: number },\n): WalkRowSpans {\n  const pack = cssPacker()\n  const pieces = rows.map(r =>\n    coalesceRuns(r.runs, pxPerBp).map(run => ({\n      kind: kindOf(run),\n      pieces: runPieces(run, ramp, pxPerBp, pack),\n    })),\n  )\n  const totals = { bars: 0, gaps: 0, hairlines: 0 }\n  for (const runs of pieces) {\n    for (const run of runs) {\n      totals[run.kind] += run.pieces.length\n    }\n  }\n  const spans = {\n    bars: channels(totals.bars),\n    gaps: channels(totals.gaps),\n    hairlines: channels(totals.hairlines),\n  }\n  const starts = {\n    bars: new Uint32Array(rows.length + 1),\n    gaps: new Uint32Array(rows.length + 1),\n    hairlines: new Uint32Array(rows.length + 1),\n  }\n  let longest = 1\n  pieces.forEach((runs, row) => {\n    for (const run of runs) {\n      const c = spans[run.kind]\n      for (const [x, x2, color] of run.pieces) {\n        const i = c.count++\n        c.x[i] = x\n        c.x2[i] = x2\n        c.row[i] = row\n        c.color[i] = color\n        longest = Math.max(longest, x2)\n      }\n    }\n    for (const kind of SPAN_KINDS) {\n      starts[kind][row + 1] = spans[kind].count\n    }\n  })\n  return {\n    ...spans,\n    barRows: starts.bars,\n    gapRows: starts.gaps,\n    hairlineRows: starts.hairlines,\n    longest,\n  }\n}\n\nexport interface WalkRowSpanFrame {\n  scaleX: number\n  scaleY: number\n  translateX: number\n  translateY: number\n  width: number\n  height: number\n  rowPx: number\n  barPx: number\n  origin: number\n  // runs of rows whose y is `rowY(first)` plus a row pitch each, as the\n  // reference row and each grouped section are\n  blocks: { first: number; count: number; rowY: number }[]\n}\n\n/**\n * Paints the spans through render-core's span mark, a block of rows at a\n * time: row i's bar centred where `walkRowsTree` centres it, `barPx` tall,\n * its x at `origin + bp` through the pane's transform.\n */\nexport function paintWalkRowSpans(\n  ctx: MarkContext2D,\n  spans: WalkRowSpans,\n  f: WalkRowSpanFrame,\n) {\n  const { longest } = spans\n  const block = {\n    start: 0,\n    end: longest,\n    screenStartPx: f.origin * f.scaleX + f.translateX,\n    screenEndPx: (f.origin + longest) * f.scaleX + f.translateX,\n    reversed: false,\n    displayedRegionIndex: 0,\n  }\n  const frame = { canvasWidth: f.width, canvasHeight: f.height }\n  const rowHeight = f.rowPx * f.scaleY\n  for (const { first, count, rowY } of f.blocks) {\n    // slot `row` centres at (rowY + (row - first) * rowPx) * scaleY + translateY\n    const scrollTop =\n      rowHeight / 2 - f.translateY - (rowY - first * f.rowPx) * f.scaleY\n    const top = (rowY - f.rowPx / 2) * f.scaleY + f.translateY\n    if (top > f.height || top + count * rowHeight < 0) {\n      continue\n    }\n    for (const [c, starts, barPx] of [\n      [spans.bars, spans.barRows, f.barPx],\n      [spans.gaps, spans.gapRows, Math.min(GAP_PX, f.barPx)],\n      [spans.hairlines, spans.hairlineRows, Math.min(MISSING_PX, f.barPx)],\n    ] as const) {\n      spanMark.paintBlock(\n        ctx,\n        slice(c, starts[first]!, starts[first + count]!),\n        block,\n        frame,\n        {\n          rowHeight,\n          rowProportion: barPx / rowHeight,\n          minWidthPx: 1,\n          seamPx: 0,\n          scrollTop,\n        },\n      )\n    }\n  }\n}\n", "import { useCallback, useMemo } from 'react'\n\nimport { barEnd } from '@jbrowse/bandage-core/layout/walkRowDraw'\nimport { computed } from 'mobx'\nimport { observer } from 'mobx-react'\n\nimport ElTree, { useSvgId } from './ElTree'\nimport { PaneOverlayCanvas, PaneSvgLayer } from './PaneLayer'\nimport { paintWalkRowBlocks } from '../walkRowBlocks'\nimport { SECTION_HEADER_PX, walkRowTrees } from '../walkRowGroups'\nimport { paintWalkRowSpans, walkRowSpans } from '../walkRowSpans'\n\nimport type { GraphPaneModel } from '../model'\n\n// The walk-rows layout's bars: one per haplotype walk under the reference\n// row, each on its own bp axis from the window's left edge. The runs paint as\n// spans on a canvas, coloured by whether they are on the reference walk's\n// path, and core's walkRowsTree draws the rest: unit separators, each row's\n// genes from its own assembly's annotation, the allele a repeat genotype\n// called and a readout. Under the\n// reference-position ramp an aligned run takes the hue of the reference it is\n// threaded through. In a tandem array that is the aligner's pick among\n// near-identical copies, so the hue says which reference copy the graph used,\n// not which one a copy resembles.\n//\n// The walk rows pair a repeat record's allele with each walk \u2014 see\n// repeats/walkCalls.ts, which also holds the threshold a red readout is read\n// off. Colouring each copy by its unit is jbrowse-plugin-tandem-repeat's.\n\n// The spans are recut only when the rows, the zoom or the ramp change\nconst WalkRowSpansCanvas = observer(function WalkRowSpansCanvas({\n  model,\n}: {\n  model: GraphPaneModel\n}) {\n  const spans = useMemo(\n    () =>\n      computed(() =>\n        model.walkRowBars\n          ? walkRowSpans(\n              model.walkRowList,\n              model.scaleX,\n              model.referenceRampDomain,\n            )\n          : undefined,\n      ),\n    [model],\n  )\n  const paint = useCallback(\n    (ctx: CanvasRenderingContext2D) => {\n      const bars = model.walkRowBars\n      const place = model.walkRowPlacement\n      const pitch = model.walkRowPitch\n      const painted = spans.get()\n      if (!bars || !place || !pitch || !painted) {\n        return\n      }\n      paintWalkRowSpans(ctx, painted, {\n        ...model.screenTransform,\n        width: model.paneWidth,\n        height: model.canvasHeight,\n        rowPx: pitch.rowPx,\n        barPx: pitch.barPx,\n        origin: bars.origin,\n        blocks: place.blocks(bars.rows.length + 1),\n      })\n    },\n    [model, spans],\n  )\n  return (\n    <PaneOverlayCanvas\n      model={model}\n      zIndex={3}\n      testId=\"graph-walk-rows-spans\"\n      paint={paint}\n    />\n  )\n})\n\nconst RIBBON_FORWARD = 'rgba(160, 196, 232, 0.55)'\nconst RIBBON_REVERSED = 'rgba(160, 140, 220, 0.55)'\n\n// Under the bars, a ribbon from each stretch of a row to where the row below\n// walks the same nodes, lavender where it walks them backwards, as ggbandage\n// draws them: neighbours that share a copy, an inversion or a duplication\n// read off the ribbons' shape\nconst WalkRowRibbonsCanvas = observer(function WalkRowRibbonsCanvas({\n  model,\n}: {\n  model: GraphPaneModel\n}) {\n  const paint = useCallback(\n    (ctx: CanvasRenderingContext2D) => {\n      const links = model.walkRowRibbons\n      const bars = model.walkRowBars\n      const place = model.walkRowPlacement\n      const pitch = model.walkRowPitch\n      if (!links || !bars || !place || !pitch) {\n        return\n      }\n      const { scaleX, scaleY, translateX, translateY } = model.screenTransform\n      const x = (offset: number) => (bars.origin + offset) * scaleX + translateX\n      const half = pitch.barPx / 2\n      for (const { row, a0, a1, b0, b1 } of links) {\n        const top = place.rowY(row) * scaleY + translateY + half\n        const bottom = place.rowY(row + 1) * scaleY + translateY - half\n        ctx.fillStyle = b0 > b1 ? RIBBON_REVERSED : RIBBON_FORWARD\n        ctx.beginPath()\n        ctx.moveTo(x(a0), top)\n        ctx.lineTo(x(a1), top)\n        ctx.lineTo(x(b1), bottom)\n        ctx.lineTo(x(b0), bottom)\n        ctx.closePath()\n        ctx.fill()\n      }\n    },\n    [model],\n  )\n  return (\n    <PaneOverlayCanvas\n      model={model}\n      zIndex={2}\n      testId=\"graph-walk-rows-ribbons\"\n      paint={paint}\n    />\n  )\n})\n\n// Over the bars, the lettered blocks: copy A on two rows, and C where another\n// row has A, read at a glance\nconst WalkRowBlocksCanvas = observer(function WalkRowBlocksCanvas({\n  model,\n}: {\n  model: GraphPaneModel\n}) {\n  const paint = useCallback(\n    (ctx: CanvasRenderingContext2D) => {\n      const blocks = model.sharedBlocks\n      const bars = model.walkRowBars\n      const place = model.walkRowPlacement\n      const pitch = model.walkRowPitch\n      if (!blocks || !bars || !place || !pitch) {\n        return\n      }\n      const { scaleX, scaleY, translateX, translateY } = model.screenTransform\n      paintWalkRowBlocks(ctx, blocks, {\n        x: offset => (bars.origin + offset) * scaleX + translateX,\n        rowCentre: row => place.rowY(row) * scaleY + translateY,\n        barPx: pitch.barPx,\n      })\n    },\n    [model],\n  )\n  return (\n    <PaneOverlayCanvas\n      model={model}\n      zIndex={3}\n      testId=\"graph-walk-rows-blocks\"\n      paint={paint}\n    />\n  )\n})\n\n// Its own observer, so moving between rows redraws this rect and not every row\nconst HoveredWalkRow = observer(function HoveredWalkRow({\n  model,\n}: {\n  model: GraphPaneModel\n}) {\n  const bars = model.walkRowBars\n  const place = model.walkRowPlacement\n  const pitch = model.walkRowPitch\n  if (!bars || !place || !pitch || !model.hoveredWalkRowText) {\n    return null\n  }\n  const rows = model.walkRowList\n  const index = rows.findIndex(r => r.name === model.hoveredWalkRow)\n  const row = rows[index]\n  if (!row) {\n    return null\n  }\n  const start = model.toScreen({ x: bars.origin, y: place.rowY(index) })\n  return (\n    <rect\n      data-testid=\"graph-walk-row-hovered\"\n      x={start.x - 2}\n      y={start.y - pitch.rowPx / 2 - 1}\n      width={barEnd(row) * model.scaleX + 4}\n      height={pitch.rowPx + 2}\n      fill=\"none\"\n      stroke=\"#111\"\n      strokeWidth={1}\n    />\n  )\n})\n\n// `vector` for an SVG export, which draws the bars as walkRowsTree's rects\nconst WalkRowsOverlay = observer(function WalkRowsOverlay({\n  model,\n  vector = false,\n}: {\n  model: GraphPaneModel\n  vector?: boolean\n}) {\n  const idPrefix = useSvgId()\n  const bars = model.walkRowBars\n  const place = model.walkRowPlacement\n  const pitch = model.walkRowPitch\n  if (!bars || !place || !pitch) {\n    return null\n  }\n  const { paneWidth: width, canvasHeight } = model\n  // the canvas paints the bars, except in a vector export\n  const frame = {\n    ...model.screenTransform,\n    width,\n    height: canvasHeight,\n    ...pitch,\n    bars: vector,\n  }\n  return (\n    <>\n      {vector || !model.walkRowRibbons ? null : (\n        <WalkRowRibbonsCanvas model={model} />\n      )}\n      {vector ? null : <WalkRowSpansCanvas model={model} />}\n      {vector || !model.sharedBlocks ? null : (\n        <WalkRowBlocksCanvas model={model} />\n      )}\n      <PaneSvgLayer\n        model={model}\n        zIndex={3}\n        overflow=\"visible\"\n        testId=\"graph-walk-rows\"\n      >\n        {walkRowTrees(\n          bars,\n          model.walkRowGroups?.sections ?? [],\n          place.rowY,\n          frame,\n          {\n            ramp: model.referenceRampDomain,\n            rowGenes: model.walkRowGenes,\n            idPrefix,\n          },\n        ).map((tree, i) => (\n          <ElTree key={i} el={tree} />\n        ))}\n        {place.headers.map(header => (\n          <text\n            key={header.key}\n            x={10}\n            y={\n              model.toScreen({ x: 0, y: header.top }).y + SECTION_HEADER_PX - 4\n            }\n            fontFamily=\"sans-serif\"\n            fontSize={11}\n            fontWeight=\"bold\"\n            fill=\"#333\"\n            data-testid=\"graph-walk-section\"\n          >\n            {header.title}\n          </text>\n        ))}\n        <HoveredWalkRow model={model} />\n      </PaneSvgLayer>\n    </>\n  )\n})\n\nexport default WalkRowsOverlay\n"],
+  "mappings": 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package/dist/chunks/chunk-FLKXKTS2.js

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