jbrowse-plugin-graphgenomeviewer 8.3.2 → 8.3.4

package/dist/chunks/{chunk-HM7XSNBN.js → chunk-NFPLX56S.js}

@@ -1,2 +1,2 @@
 import{d as A}from"./chunk-ROZPEXN4.js";import{a as x,d as O}from"./chunk-3VGXCEMQ.js";import{f as I}from"./chunk-6VNDP3UB.js";function G(e){return Array.isArray(e)&&e.every(t=>typeof t=="string")}function se(e){let t=x(e).slice(1);return t.length>0?t:void 0}function M(e){return e.type==="WalkTabixSyntenyAdapter"||e.type==="RgfaTabixAdapter"&&(typeof e.walksUri=="string"&&e.walksUri!==""||I(e.walksLocation))}function oe(e){return e.type==="GbzBaseSyntenyAdapter"||M(e)}function ie(e){let{defaultHaplotypes:t}=e;return M(e)&&G(t)&&t.length>0?t:void 0}function ae(e){return x(e)[0]}function ce(e){return O(e).adapter}function ue(e,t){return e===void 0||e===t?void 0:`The graph is cut on its reference, ${e}: open it from a view of ${e}`}function i(e,t){return typeof e.get=="function"?e.get(t):e[t]}function b(e,t){return e.find(n=>n.trackId===t)}function l(e){return`${e.trackId} ${e.name??""}`}var U=new Set(["BedAdapter","BedTabixAdapter","BigBedAdapter","VcfAdapter","VcfTabixAdapter"]),R=/repeat|tandem|\bstr\b|vntr|trf|trgt|vamos|expansion|microsat/i;function Ge(e,t){let n=t?b(e,t):void 0;return n||e.filter(s=>U.has(s.adapterType)).find(s=>R.test(l(s)))}var B=/^\w+=[^;]*(;\w+=[^;]*)*$/;function H(e){let t=i(e,"name");if(!(typeof t!="string"||!B.test(t)))return Object.fromEntries(t.split(";").map(n=>{let r=n.indexOf("=");return[n.slice(0,r),n.slice(r+1)]}))}function d(e,t){let n=i(e,t);return n!==void 0?n:i(e,"INFO")?.[t]??H(e)?.[t]}var P=["RUS","MOTIFS","RU","motifs","motif","sequence","consensus"],v=["RUL","period","PERIOD","consensusSize","unit","unitLength"],j=["TRID","REPID","VARID","ID","name","id"];function h(e,t){for(let n of t){let r=d(e,n),s=String((Array.isArray(r)?r[0]:r)??"").split(",")[0].trim();if(s!==""&&s!==".")return s}}var $=/^[ACGTURYSWKMBDHVN]+$/i;function V(e){let t=Number(h(e,v));if(Number.isFinite(t)&&t>0)return Math.round(t);let n=h(e,P);return n&&$.test(n)?n.length:void 0}function m(e){return(Array.isArray(e)?e:String(e??"").split(",")).map(n=>{let r=n===""||n===null||n===void 0?NaN:Number(n);return Number.isFinite(r)?r:void 0})}function N(e){return(Array.isArray(e)?e:String(e??"").split(",")).map(n=>{let r=String(n??"").trim();return r===""||r==="."?void 0:r})}var w="<CNV:TR>";function K(e){let t=N(i(e,"ALT"));if(!t.includes(w))return;let n=m(d(e,"RN")),r=N(d(e,"RUS")),s=m(d(e,"RUL")),o=m(d(e,"RUC")),a=m(d(e,"RB")),c=0;return t.map((u,f)=>{let p=n[f]??(u===w?1:0),k=0,S=0;for(let F=0;F<p;F++,c++){let y=r[c],L=s[c]??(y&&$.test(y)?y.length:void 0),_=o[c],C=a[c]??(L&&_!==void 0?Math.round(L*_):void 0);C!==void 0&&(k+=C,S++)}return u===w&&p>0&&S===p?k:void 0})}function Y(e,t,n){let r=e?.includes("|");return(e??"").split(/[/|]/).flatMap((s,o)=>{let a=s===""?NaN:Number(s),c=a>0?t[a-1]:n;return!Number.isInteger(a)||c===void 0?[]:[{bp:c,...r?{haplotype:o+1}:{}}]})}function W(e,t,n){let r=i(e,"samples"),s={};for(let[o,a]of Object.entries(r??{})){let c=m(a.SD),u=m(a.AL).flatMap((p,k)=>p!==void 0&&p>0?[c[k]===void 0?{bp:p}:{bp:p,spanningReads:c[k]}]:[]),f=u.length>0||!t?u:Y(N(a.GT)[0],t,n);f.length>0&&(s[o]=f)}return Object.keys(s).length>0?s:void 0}function J(e,t){let n=d(e,"start"),r=d(e,"end"),s=m(d(e,"SVLEN"))[0];return t&&s!==void 0?{start:n+1,end:n+1+s}:{start:n,end:r}}function Ue(e){let t=[];for(let n of e){let r=K(n),{start:s,end:o}=J(n,r!==void 0),a=V(n);if(!(o>s)||a===void 0)continue;let c=d(n,"refName"),u=h(n,P),f=h(n,j);t.push({key:`${c}:${s}-${o}`,name:(f&&!B.test(f)?f:void 0)??(u&&u.length<=12?`(${u})n`:`${c}:${(s+1).toLocaleString("en-US")}-${o.toLocaleString("en-US")}`),refName:c,start:s,end:o,unit:a,motif:u,calls:W(n,r,o-s)})}return t.sort((n,r)=>n.start-r.start)}function T(e){let t=[];for(let n of[...e].sort((r,s)=>r.start-s.start)){let r=t.at(-1);r&&n.start<=r.end?r.end=Math.max(r.end,n.end):t.push({...n})}return t}function E(e){let t=[],n=new Map;for(let r of[...e].sort((s,o)=>s.start-o.start)){let s=`${r.refName}	${r.strand}	${r.name}`,o=n.get(s);if(o&&r.start<o.end)o.end=Math.max(o.end,r.end),o.exons=T([...o.exons,...r.exons]);else{let a={...r,exons:T(r.exons)};t.push(a),n.set(s,a)}}return t}var q=new Set(["Gff3TabixAdapter","Gff3Adapter","BedTabixAdapter","BedAdapter","GtfTabixAdapter","GtfAdapter","BigBedAdapter","NCListAdapter"]),z=/gene|refseq|gencode|ensembl|annotation/i,X=new Set(["BedTabixAdapter","BedAdapter"]);function Qe(e,t){let n=t?b(e,t):void 0;if(n)return n;let r=e.filter(s=>q.has(s.adapterType)&&!R.test(l(s)));return r.find(s=>z.test(l(s)))??r.find(s=>!X.has(s.adapterType))}var Q=/\bTEs?\b|transpos/i;function Ze(e){return e&&Q.test(l(e))?"TE":"gene"}function en(e,t){let n=e.tracks?.find(r=>A(r.configuration,"trackId")===t)?.displays[0];return n?A(n.configuration,"filter")??[]:[]}var Z=new Set(["chromosome","region","contig","supercontig","scaffold"]),ee=new Set(["exon","CDS","five_prime_UTR","three_prime_UTR","UTR"]);function D(e,t){let n=i(e,"type");typeof n=="string"&&ee.has(n)&&t.push({start:i(e,"start"),end:i(e,"end")});let r=i(e,"subfeatures");for(let s of r??[])D(s,t)}function nn(e){let t=[];for(let n of e){let r=i(n,"gene_name")??i(n,"name")??i(n,"gene")??i(n,"gene_id"),s=i(n,"start"),o=i(n,"end");if(!r||!(o>s)||Z.has(i(n,"type")))continue;let a=[];D(n,a),t.push({name:r,refName:i(n,"refName"),start:s,end:o,strand:i(n,"strand")??0,exons:a.length?T(a):[{start:s,end:o}]})}return E(t)}var g=JBrowseExports["tss-react/mui"],ne=e=>g!=null&&e in Object(g)?g[e]:Object.assign(function(){throw new Error("This JBrowse does not provide '"+e+"' from 'tss-react/mui' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse")},{jbrowseHostMissing:e});var rn=ne("makeStyles"),sn=g&&g.__esModule?g.default:g;export{se as a,M as b,oe as c,ie as d,ae as e,ce as f,ue as g,U as h,Ge as i,Ue as j,q as k,Qe as l,Ze as m,en as n,nn as o,rn as p};
-//# sourceMappingURL=chunk-HM7XSNBN.js.map
+//# sourceMappingURL=chunk-NFPLX56S.js.map

package/dist/chunks/{chunk-HM7XSNBN.js.map → chunk-NFPLX56S.js.map}

@@ -1,6 +1,6 @@
 {
   "version": 3,
-  "sources": ["../../src/graphTrackConfig.ts", "../../src/GraphGenomeView/trackFeatures.ts", "../../src/GraphGenomeView/repeats/repeatFeatures.ts", "../../node_modules/.pnpm/@jbrowse+bandage-core@12.2.0/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-EQDQ7P4Y.js", "../../src/GraphGenomeView/genes/geneFeatures.ts", "host:tss-react/mui"],
+  "sources": ["../../src/graphTrackConfig.ts", "../../src/GraphGenomeView/trackFeatures.ts", "../../src/GraphGenomeView/repeats/repeatFeatures.ts", "../../node_modules/.pnpm/@jbrowse+bandage-core@12.3.0/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-EQDQ7P4Y.js", "../../src/GraphGenomeView/genes/geneFeatures.ts", "host:tss-react/mui"],
   "sourcesContent": ["import {\n  getConfAssemblyNamesOrNone,\n  toTrackConfigEntry,\n} from '@jbrowse/core/util/tracks'\n\nimport { snapshotNamesFile } from './locationName.ts'\n\nimport type { AnyTrackConfig } from '@jbrowse/core/configuration'\n\nfunction isStringArray(value: unknown): value is string[] {\n  return Array.isArray(value) && value.every(item => typeof item === 'string')\n}\n\n// The assemblies the track names after its reference, which is what core's\n// MultiWaySyntenyDisplay opens a lane-declaring source on.\nexport function trackLanes(track: AnyTrackConfig) {\n  const lanes = getConfAssemblyNamesOrNone(track).slice(1)\n  return lanes.length > 0 ? lanes : undefined\n}\n\n// Whether a track names a walk file, by the `walksUri` shorthand as written\n// or the location it expands to: an rGFA track may, and a\n// WalkTabixSyntenyAdapter one does\nexport function walkIndexed(adapterConfig: Record<string, unknown>) {\n  return (\n    adapterConfig.type === 'WalkTabixSyntenyAdapter' ||\n    (adapterConfig.type === 'RgfaTabixAdapter' &&\n      ((typeof adapterConfig.walksUri === 'string' &&\n        adapterConfig.walksUri !== '') ||\n        snapshotNamesFile(adapterConfig.walksLocation)))\n  )\n}\n\n// Whether a track's cut reads `haplotypes`: a GBZ cut does, and so does an\n// rGFA one with a walk file\nexport function cutsByHaplotype(adapterConfig: Record<string, unknown>) {\n  return (\n    adapterConfig.type === 'GbzBaseSyntenyAdapter' || walkIndexed(adapterConfig)\n  )\n}\n\n// The haplotypes a walk-indexed track's config names to cut for until the\n// user picks others\nexport function configHaplotypes(adapterConfig: Record<string, unknown>) {\n  const { defaultHaplotypes } = adapterConfig\n  return walkIndexed(adapterConfig) &&\n    isStringArray(defaultHaplotypes) &&\n    defaultHaplotypes.length > 0\n    ? defaultHaplotypes\n    : undefined\n}\n\n// A graph is cut on the first assembly its track names, the rule\n// GbzBaseSyntenyAdapter states for its anchor. Every other assembly the track\n// names holds its sequence as rank>0 alleles off that reference's backbone, so\n// a window on one has no reference coordinates to frame the cut by.\nexport function graphReferenceAssembly(track: AnyTrackConfig) {\n  return getConfAssemblyNamesOrNone(track)[0]\n}\n\n// A track's adapter config, from a live node or a session's frozen entry\nexport function trackAdapterSnapshot(track: AnyTrackConfig) {\n  return toTrackConfigEntry(track).adapter as Record<string, unknown>\n}\n\nexport function offReferenceProblem(\n  referenceAssembly: string | undefined,\n  assemblyName: string,\n) {\n  return referenceAssembly === undefined || referenceAssembly === assemblyName\n    ? undefined\n    : `The graph is cut on its reference, ${referenceAssembly}: open it from a view of ${referenceAssembly}`\n}\n", "import type { Feature } from '@jbrowse/core/util'\n\nexport type FeatureLike = Feature | Record<string, unknown>\n\nexport function ownField(f: FeatureLike, name: string): unknown {\n  return typeof (f as Feature).get === 'function'\n    ? (f as Feature).get(name)\n    : (f as Record<string, unknown>)[name]\n}\n\nexport interface TrackChoice {\n  trackId: string\n  name?: string\n  adapterType: string\n}\n\nexport function namedTrack<T extends TrackChoice>(tracks: T[], named: string) {\n  return tracks.find(t => t.trackId === named)\n}\n\n// what a track-name hint such as /repeat|tandem/ is matched against\nexport function trackLabel(t: TrackChoice) {\n  return `${t.trackId} ${t.name ?? ''}`\n}\n", "import { namedTrack, ownField, trackLabel } from '../trackFeatures'\n\nimport type { FeatureLike, TrackChoice } from '../trackFeatures'\n\nexport interface RepeatCall {\n  bp: number\n  // TRGT's `SD`. Zero means the allele is a copy of the one the reads did\n  // support, so its length states nothing about a second haplotype; absent\n  // where the genotyper writes no such field.\n  spanningReads?: number\n  // the PanSN haplotype a phased genotype puts this allele on\n  haplotype?: number\n}\n\n// A tandem repeat array as the walk rows need it: its span on the reference,\n// which is what the bars measure between, and its unit length, which is what\n// they tile by. Read off whatever repeat annotation the session has, since the\n// tools all state the same two facts under different names: VCF 4.5's\n// `<CNV:TR>` allele gives `RUL` and `RUS` (one entry per repeat sequence,\n// grouped by `RN`), UCSC simpleRepeat and TRF give `period` and the consensus\n// `sequence`, TRGT gives `MOTIFS` and `TRID`, ExpansionHunter `RU` and `REPID`,\n// HipSTR and GangSTR `PERIOD`, vamos its `motifs`. A VCF record's INFO is\n// searched as well as its top level, and a list's first entry is the unit the\n// bars tile by: for a compound array that is the first repeat sequence, which\n// is the expanding one at every such locus in the common catalogues.\nexport interface RepeatArray {\n  key: string\n  name: string\n  refName: string\n  start: number\n  end: number\n  unit: number\n  motif?: string\n  // Each sample's genotyped alleles, from a genotyper's per-sample `AL`\n  // (TRGT) or a genotype over VCF 4.5 <CNV:TR> alleles; absent from a\n  // catalogue.\n  calls?: Record<string, RepeatCall[]>\n}\n\nexport const REPEAT_ADAPTER_TYPES = new Set([\n  'BedAdapter',\n  'BedTabixAdapter',\n  'BigBedAdapter',\n  'VcfAdapter',\n  'VcfTabixAdapter',\n])\n\nexport const REPEAT_TRACK_HINT =\n  /repeat|tandem|\\bstr\\b|vntr|trf|trgt|vamos|expansion|microsat/i\n\nexport function pickRepeatTrack<T extends TrackChoice>(\n  tracks: T[],\n  named: string,\n) {\n  const chosen = named ? namedTrack(tracks, named) : undefined\n  if (chosen) {\n    return chosen\n  }\n  const candidates = tracks.filter(t => REPEAT_ADAPTER_TYPES.has(t.adapterType))\n  return candidates.find(t => REPEAT_TRACK_HINT.test(trackLabel(t)))\n}\n\n// A TRGT repeat catalogue is a BED whose name column packs the record:\n// `ID=HTT;MOTIFS=CAG,CCG;STRUC=(CAG)nCAACAG(CCG)n`. Read as fields when it\n// has that shape.\nconst PACKED_NAME = /^\\w+=[^;]*(;\\w+=[^;]*)*$/\n\nfunction packedName(f: FeatureLike) {\n  const name = ownField(f, 'name')\n  if (typeof name !== 'string' || !PACKED_NAME.test(name)) {\n    return undefined\n  }\n  return Object.fromEntries(\n    name.split(';').map(pair => {\n      const i = pair.indexOf('=')\n      return [pair.slice(0, i), pair.slice(i + 1)]\n    }),\n  )\n}\n\n// A field at the feature's top level, in a VCF record's INFO, or in a packed\n// name column, in that order.\nfunction field(f: FeatureLike, name: string): unknown {\n  const top = ownField(f, name)\n  if (top !== undefined) {\n    return top\n  }\n  const info = ownField(f, 'INFO') as Record<string, unknown> | undefined\n  return info?.[name] ?? packedName(f)?.[name]\n}\n\nconst MOTIF_FIELDS = [\n  'RUS',\n  'MOTIFS',\n  'RU',\n  'motifs',\n  'motif',\n  'sequence',\n  'consensus',\n]\nconst PERIOD_FIELDS = [\n  'RUL',\n  'period',\n  'PERIOD',\n  'consensusSize',\n  'unit',\n  'unitLength',\n]\nconst NAME_FIELDS = ['TRID', 'REPID', 'VARID', 'ID', 'name', 'id']\n\n// The first entry of a list-valued field, whether it arrived parsed or as\n// the comma-joined text a VCF INFO or a BED column holds; VCF's missing \".\"\n// counts as absent.\nfunction first(f: FeatureLike, names: string[]) {\n  for (const name of names) {\n    const value = field(f, name)\n    const one = String((Array.isArray(value) ? value[0] : value) ?? '')\n      .split(',')[0]!\n      .trim()\n    if (one !== '' && one !== '.') {\n      return one\n    }\n  }\n  return undefined\n}\n\nconst IUPAC = /^[ACGTURYSWKMBDHVN]+$/i\n\n// The unit in bp: a stated period, else the length of the first motif.\nexport function repeatUnitOf(f: FeatureLike) {\n  const period = Number(first(f, PERIOD_FIELDS))\n  if (Number.isFinite(period) && period > 0) {\n    return Math.round(period)\n  }\n  const motif = first(f, MOTIF_FIELDS)\n  return motif && IUPAC.test(motif) ? motif.length : undefined\n}\n\n// A per-sample list field, parsed or as the comma-joined text a VCF column\n// holds. A missing entry stays missing: read as 0, an absent `SD` would make\n// every allele of every genotyper that writes no such field unspanned.\nfunction numbers(value: unknown) {\n  const raw: unknown[] = Array.isArray(value)\n    ? value\n    : String(value ?? '').split(',')\n  return raw.map(one => {\n    const n =\n      one === '' || one === null || one === undefined ? NaN : Number(one)\n    return Number.isFinite(n) ? n : undefined\n  })\n}\n\nfunction strings(value: unknown) {\n  const raw: unknown[] = Array.isArray(value)\n    ? value\n    : String(value ?? '').split(',')\n  return raw.map(one => {\n    const text = String(one ?? '').trim()\n    return text === '' || text === '.' ? undefined : text\n  })\n}\n\nconst TANDEM_REPEAT = '<CNV:TR>'\n\n// Each ALT allele's length, off VCF 4.5's flattened list-of-lists: RN says how\n// many RUS/RUL/RUC/RB entries each allele takes, and the allele's bases are\n// its runs' RB, or unit length times count where RB is missing. An allele that\n// is not <CNV:TR>, or has a run stating neither, has none.\nfunction tandemAlleleBp(f: FeatureLike) {\n  const alts = strings(ownField(f, 'ALT'))\n  if (!alts.includes(TANDEM_REPEAT)) {\n    return undefined\n  }\n  const rn = numbers(field(f, 'RN'))\n  const rus = strings(field(f, 'RUS'))\n  const rul = numbers(field(f, 'RUL'))\n  const ruc = numbers(field(f, 'RUC'))\n  const rb = numbers(field(f, 'RB'))\n  let k = 0\n  return alts.map((alt, i) => {\n    const n = rn[i] ?? (alt === TANDEM_REPEAT ? 1 : 0)\n    let bp = 0\n    let known = 0\n    for (let j = 0; j < n; j++, k++) {\n      const motif = rus[k]\n      const unitLength =\n        rul[k] ?? (motif && IUPAC.test(motif) ? motif.length : undefined)\n      const count = ruc[k]\n      const runBp =\n        rb[k] ??\n        (unitLength && count !== undefined\n          ? Math.round(unitLength * count)\n          : undefined)\n      if (runBp !== undefined) {\n        bp += runBp\n        known++\n      }\n    }\n    return alt === TANDEM_REPEAT && n > 0 && known === n ? bp : undefined\n  })\n}\n\n// A sample's alleles through its genotype: 0 is the reference's, an index\n// past it the ALT allele's. A phased genotype's k-th allele is PanSN\n// haplotype k, the order vg deconstruct writes an assembly's haplotypes in.\nfunction genotyped(\n  gt: string | undefined,\n  alleleBp: (number | undefined)[],\n  referenceBp: number,\n) {\n  const phased = gt?.includes('|')\n  return (gt ?? '').split(/[/|]/).flatMap((index, k): RepeatCall[] => {\n    const i = index === '' ? NaN : Number(index)\n    const bp = i > 0 ? alleleBp[i - 1] : referenceBp\n    if (!Number.isInteger(i) || bp === undefined) {\n      return []\n    }\n    return [{ bp, ...(phased ? { haplotype: k + 1 } : {}) }]\n  })\n}\n\nfunction callsOf(\n  f: FeatureLike,\n  alleleBp: (number | undefined)[] | undefined,\n  referenceBp: number,\n) {\n  const samples = ownField(f, 'samples') as\n    Record<string, Record<string, unknown>> | undefined\n  const called: Record<string, RepeatCall[]> = {}\n  for (const [sample, fields] of Object.entries(samples ?? {})) {\n    const reads = numbers(fields.SD)\n    const lengths = numbers(fields.AL).flatMap((bp, i) =>\n      bp !== undefined && bp > 0\n        ? [reads[i] === undefined ? { bp } : { bp, spanningReads: reads[i] }]\n        : [],\n    )\n    const calls =\n      lengths.length > 0 || !alleleBp\n        ? lengths\n        : genotyped(strings(fields.GT)[0], alleleBp, referenceBp)\n    if (calls.length > 0) {\n      called[sample] = calls\n    }\n  }\n  return Object.keys(called).length > 0 ? called : undefined\n}\n\n// A <CNV:TR> record's POS is the base before the array and SVLEN the\n// reference allele's length, while a VCF feature starts at that padding base.\nfunction spanOf(f: FeatureLike, tandem: boolean) {\n  const start = field(f, 'start') as number\n  const end = field(f, 'end') as number\n  const svlen = numbers(field(f, 'SVLEN'))[0]\n  return tandem && svlen !== undefined\n    ? { start: start + 1, end: start + 1 + svlen }\n    : { start, end }\n}\n\nexport function repeatArraysFrom(features: FeatureLike[]): RepeatArray[] {\n  const arrays: RepeatArray[] = []\n  for (const f of features) {\n    const alleleBp = tandemAlleleBp(f)\n    const { start, end } = spanOf(f, alleleBp !== undefined)\n    const unit = repeatUnitOf(f)\n    if (!(end > start) || unit === undefined) {\n      continue\n    }\n    const refName = field(f, 'refName') as string\n    const motif = first(f, MOTIF_FIELDS)\n    const stated = first(f, NAME_FIELDS)\n    arrays.push({\n      key: `${refName}:${start}-${end}`,\n      name:\n        (stated && !PACKED_NAME.test(stated) ? stated : undefined) ??\n        (motif && motif.length <= 12\n          ? `(${motif})n`\n          : `${refName}:${(start + 1).toLocaleString('en-US')}-${end.toLocaleString('en-US')}`),\n      refName,\n      start,\n      end,\n      unit,\n      motif,\n      calls: callsOf(f, alleleBp, end - start),\n    })\n  }\n  return arrays.sort((a, b) => a.start - b.start)\n}\n", "// src/genes/geneFiles.ts\nvar GENE_TYPE = /(gene|gene_segment|RNA|transcript)$/i;\nvar isGene = (type) => GENE_TYPE.test(type) || type === \"CDS\" || type === \"exon\";\nfunction mergedIntervals(intervals) {\n  const out = [];\n  for (const iv of [...intervals].sort((a, b) => a.start - b.start)) {\n    const last = out.at(-1);\n    if (last && iv.start <= last.end) {\n      last.end = Math.max(last.end, iv.end);\n    } else {\n      out.push({ ...iv });\n    }\n  }\n  return out;\n}\nfunction strandOf(s) {\n  return s === \"+\" ? 1 : s === \"-\" ? -1 : 0;\n}\nfunction unescape(value) {\n  try {\n    return decodeURIComponent(value);\n  } catch {\n    return value;\n  }\n}\nfunction attributes(column) {\n  const out = /* @__PURE__ */ new Map();\n  for (const pair of column.split(\";\")) {\n    const eq = pair.indexOf(\"=\");\n    if (eq > 0) {\n      out.set(pair.slice(0, eq).trim(), unescape(pair.slice(eq + 1).trim()));\n    }\n  }\n  return out;\n}\nfunction gff3Row(line) {\n  const cols = line.split(\"\t\");\n  const start = Number(cols[3]);\n  const end = Number(cols[4]);\n  if (cols.length < 9 || !Number.isInteger(start) || !Number.isInteger(end)) {\n    return void 0;\n  }\n  return {\n    refName: cols[0],\n    type: cols[2],\n    start: start - 1,\n    end,\n    strand: strandOf(cols[6]),\n    attrs: attributes(cols[8])\n  };\n}\nfunction genesFromGff3Lines(lines) {\n  const rows = [];\n  for (const line of lines) {\n    if (line.startsWith(\"##FASTA\")) {\n      break;\n    }\n    const row = line.startsWith(\"#\") ? void 0 : gff3Row(line);\n    if (row) {\n      rows.push(row);\n    }\n  }\n  const parentOf = /* @__PURE__ */ new Map();\n  for (const { attrs } of rows) {\n    const id = attrs.get(\"ID\");\n    const parent = attrs.get(\"Parent\")?.split(\",\")[0];\n    if (id && parent) {\n      parentOf.set(id, parent);\n    }\n  }\n  const rootOf = (row) => {\n    let id = row.attrs.get(\"Parent\")?.split(\",\")[0] ?? row.attrs.get(\"ID\");\n    if (!id) {\n      return row.attrs.get(\"gene_id\");\n    }\n    const seen = /* @__PURE__ */ new Set();\n    while (id && parentOf.has(id) && !seen.has(id)) {\n      seen.add(id);\n      id = parentOf.get(id);\n    }\n    return id;\n  };\n  const groups = /* @__PURE__ */ new Map();\n  rows.forEach((row, i) => {\n    const root = rootOf(row) ?? `#${i}`;\n    const key = `${row.refName}\t${root}`;\n    const group = groups.get(key) ?? groups.set(key, { rows: [] }).get(key);\n    group.rows.push(row);\n    if (!row.attrs.has(\"Parent\") && !group.top) {\n      group.top = row;\n    }\n  });\n  const genes = [];\n  for (const [key, { top, rows: rows2 }] of groups) {\n    if (top && !isGene(top.type)) {\n      continue;\n    }\n    const first = top ?? rows2[0];\n    const start = top?.start ?? Math.min(...rows2.map((r) => r.start));\n    const end = top?.end ?? Math.max(...rows2.map((r) => r.end));\n    const a = first.attrs;\n    const spans = (type) => rows2.filter((r) => r.type === type).map((r) => ({ start: r.start, end: r.end }));\n    const exons = spans(\"exon\");\n    const coding = spans(\"CDS\");\n    const transcribed = rows2.some(\n      (r) => r !== top && r.type !== \"exon\" && r.type !== \"CDS\"\n    );\n    genes.push({\n      name: a.get(\"Name\") ?? a.get(\"gene_name\") ?? a.get(\"gene\") ?? a.get(\"gene_id\") ?? key.split(\"\t\")[1],\n      refName: first.refName,\n      start,\n      end,\n      strand: first.strand,\n      // A range read holds only the rows over its window, so a gene with\n      // transcripts but no exon or CDS there is intronic in it. Only a gene\n      // with no transcripts, as a bacterium's gene and CDS, is one exon.\n      exons: exons.length ? mergedIntervals(exons) : transcribed ? mergedIntervals(coding) : [{ start, end }]\n    });\n  }\n  return genes;\n}\nfunction mergeOverlappingByName(genes) {\n  const out = [];\n  const open = /* @__PURE__ */ new Map();\n  for (const g of [...genes].sort((a, b) => a.start - b.start)) {\n    const key = `${g.refName}\t${g.strand}\t${g.name}`;\n    const last = open.get(key);\n    if (last && g.start < last.end) {\n      last.end = Math.max(last.end, g.end);\n      last.exons = mergedIntervals([...last.exons, ...g.exons]);\n    } else {\n      const gene = { ...g, exons: mergedIntervals(g.exons) };\n      out.push(gene);\n      open.set(key, gene);\n    }\n  }\n  return out;\n}\nvar BED_HEADER = /^(#|track\\s|browser\\s)/;\nfunction genesFromBed(text) {\n  const rows = [];\n  for (const line of text.split(\"\\n\")) {\n    const cols = line.replace(/\\r$/, \"\").split(\"\t\");\n    const start = Number(cols[1]);\n    const end = Number(cols[2]);\n    if (BED_HEADER.test(line) || cols.length < 3 || !Number.isInteger(start) || !(end > start)) {\n      continue;\n    }\n    const refName = cols[0];\n    const name = cols[3] && cols[3] !== \".\" ? cols[3] : `${refName}:${start + 1}-${end}`;\n    const sizes = cols[10]?.split(\",\").filter((s) => s !== \"\").map(Number);\n    const starts = cols[11]?.split(\",\").filter((s) => s !== \"\").map(Number);\n    const blocks = sizes?.length && sizes.length === starts?.length ? sizes.map((size, i) => ({\n      start: start + starts[i],\n      end: start + starts[i] + size\n    })) : [{ start, end }];\n    rows.push({\n      name,\n      refName,\n      start,\n      end,\n      strand: strandOf(cols[5]),\n      exons: blocks\n    });\n  }\n  return mergeOverlappingByName(rows);\n}\nfunction sniffedFormat(text) {\n  const first = text.split(\"\\n\", 1e3).find((l) => l.trim() !== \"\" && !BED_HEADER.test(l));\n  const cols = first?.split(\"\t\") ?? [];\n  return /^\\d+$/.test(cols[1] ?? \"\") && /^\\d+$/.test(cols[2] ?? \"\") ? \"bed\" : \"gff3\";\n}\nfunction genesFromText(text, format = sniffedFormat(text)) {\n  return format === \"bed\" ? genesFromBed(text) : genesFromGff3Lines(text.split(/\\r?\\n/));\n}\n\nexport {\n  mergedIntervals,\n  genesFromGff3Lines,\n  mergeOverlappingByName,\n  genesFromBed,\n  genesFromText\n};\n", "import {\n  mergeOverlappingByName,\n  mergedIntervals,\n} from '@jbrowse/bandage-core/genes/geneFiles'\nimport { readConfObject } from '@jbrowse/core/configuration'\n\nimport { REPEAT_TRACK_HINT } from '../repeats/repeatFeatures'\nimport { namedTrack, ownField, trackLabel } from '../trackFeatures'\n\nimport type { FeatureLike, TrackChoice } from '../trackFeatures'\nimport type { GeneModel } from '@jbrowse/bandage-core/genes/genePins'\nimport type { AnyConfigurationModel } from '@jbrowse/core/configuration'\n\n// The adapters whose tracks hold gene models, in the order the session's\n// tracks are searched when no track is named.\nexport const GENE_ADAPTER_TYPES = new Set([\n  'Gff3TabixAdapter',\n  'Gff3Adapter',\n  'BedTabixAdapter',\n  'BedAdapter',\n  'GtfTabixAdapter',\n  'GtfAdapter',\n  'BigBedAdapter',\n  'NCListAdapter',\n])\n\nconst GENE_TRACK_HINT = /gene|refseq|gencode|ensembl|annotation/i\n\n// A BED track is as often peaks or repeats as genes, so one counts only where\n// its name says it is annotation\nconst BED_ADAPTER_TYPES = new Set(['BedTabixAdapter', 'BedAdapter'])\n\n// Which of the session's tracks to read genes from: the named one while the\n// assembly has it (a saved pick can name a track since removed), else the\n// first gene-bearing track on the assembly whose name says it is annotation,\n// else the first non-BED gene-bearing track. A track whose name says repeats is\n// never picked unnamed, as \"RepeatMasker annotation\" would be.\nexport function pickGeneTrack<T extends TrackChoice>(\n  tracks: T[],\n  named: string,\n) {\n  const chosen = named ? namedTrack(tracks, named) : undefined\n  if (chosen) {\n    return chosen\n  }\n  const candidates = tracks.filter(\n    t =>\n      GENE_ADAPTER_TYPES.has(t.adapterType) &&\n      !REPEAT_TRACK_HINT.test(trackLabel(t)),\n  )\n  return (\n    candidates.find(t => GENE_TRACK_HINT.test(trackLabel(t))) ??\n    candidates.find(t => !BED_ADAPTER_TYPES.has(t.adapterType))\n  )\n}\n\nconst TE_TRACK_HINT = /\\bTEs?\\b|transpos/i\n\n// What a walk row's boxes are, for the key: TEs where the annotation track's\n// name says so, else genes\nexport function annotationNoun(track: TrackChoice | undefined) {\n  return track && TE_TRACK_HINT.test(trackLabel(track)) ? 'TE' : 'gene'\n}\n\ninterface LaneView {\n  tracks?: readonly {\n    configuration: AnyConfigurationModel\n    displays: readonly { configuration: AnyConfigurationModel }[]\n  }[]\n}\n\n// The `filter` of the gene track's lane in the view the graph is drawn in, so\n// the chips name what the lane draws. None where the view shows no such lane,\n// or has no tracks, as a graph genome view of its own.\nexport function laneFilters(view: object, trackId: string | undefined) {\n  const lane = (view as LaneView).tracks?.find(\n    t => readConfObject(t.configuration, 'trackId') === trackId,\n  )?.displays[0]\n  return lane\n    ? ((readConfObject(lane.configuration, 'filter') as string[] | undefined) ??\n        [])\n    : []\n}\n\n// Records spanning a whole sequence, the types the GFF3 adapter declines to\n// widen a fetch for. RefSeq opens every molecule with a `region` named\n// ANONYMOUS.\nconst WHOLE_SEQUENCE_TYPES = new Set([\n  'chromosome',\n  'region',\n  'contig',\n  'supercontig',\n  'scaffold',\n])\n\n// JBrowse's BED parser splits a coding BED12 block into CDS and UTR parts and\n// keeps `exon` for non-coding ones, so all of them are exon\nconst EXON_PARTS = new Set([\n  'exon',\n  'CDS',\n  'five_prime_UTR',\n  'three_prime_UTR',\n  'UTR',\n])\n\nfunction exonsOf(f: FeatureLike, into: { start: number; end: number }[]) {\n  const type = ownField(f, 'type')\n  if (typeof type === 'string' && EXON_PARTS.has(type)) {\n    into.push({\n      start: ownField(f, 'start') as number,\n      end: ownField(f, 'end') as number,\n    })\n  }\n  const children = ownField(f, 'subfeatures') as FeatureLike[] | undefined\n  for (const child of children ?? []) {\n    exonsOf(child, into)\n  }\n}\n\n// Genes from a track's features: every top-level feature but a whole-sequence\n// record, named by the first of gene_name, name, gene and gene_id it carries,\n// with the exons found anywhere under it merged. A feature with no exons is one exon,\n// its whole span. A BED track gives one feature per transcript, so a name's\n// overlapping features merge, while its copies down the contig stay apart.\n// UCSC's ncbiRefSeq.gff gene records carry their symbol only as gene_id. A\n// feature with none of those names is left out: its raw ID, RefSeq's\n// `id-NC_000913.3:1978503..1979270`, only restates where it is.\nexport function geneModelsFrom(features: FeatureLike[]): GeneModel[] {\n  const genes: GeneModel[] = []\n  for (const f of features) {\n    const name =\n      (ownField(f, 'gene_name') as string | undefined) ??\n      (ownField(f, 'name') as string | undefined) ??\n      (ownField(f, 'gene') as string | undefined) ??\n      (ownField(f, 'gene_id') as string | undefined)\n    const start = ownField(f, 'start') as number\n    const end = ownField(f, 'end') as number\n    if (\n      !name ||\n      !(end > start) ||\n      WHOLE_SEQUENCE_TYPES.has(ownField(f, 'type') as string)\n    ) {\n      continue\n    }\n    const exons: { start: number; end: number }[] = []\n    exonsOf(f, exons)\n    genes.push({\n      name,\n      refName: ownField(f, 'refName') as string,\n      start,\n      end,\n      strand: (ownField(f, 'strand') as number | undefined) ?? 0,\n      exons: exons.length ? mergedIntervals(exons) : [{ start, end }],\n    })\n  }\n  return mergeOverlappingByName(genes)\n}\n", "const host = JBrowseExports[\"tss-react/mui\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"tss-react/mui\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport const cx = /* @__PURE__ */ read(\"cx\")\nexport const keyframes = /* @__PURE__ */ read(\"keyframes\")\nexport const makeStyles = /* @__PURE__ */ read(\"makeStyles\")\nexport default host && host.__esModule ? host.default : host"],
   "mappings": "+HASA,SAASA,EAAcC,EAAmC,CACxD,OAAO,MAAM,QAAQA,CAAK,GAAKA,EAAM,MAAMC,GAAQ,OAAOA,GAAS,QAAQ,CAC7E,CAIO,SAASC,GAAWC,EAAuB,CAChD,IAAMC,EAAQC,EAA2BF,CAAK,EAAE,MAAM,CAAC,EACvD,OAAOC,EAAM,OAAS,EAAIA,EAAQ,MACpC,CAKO,SAASE,EAAYC,EAAwC,CAClE,OACEA,EAAc,OAAS,2BACtBA,EAAc,OAAS,qBACpB,OAAOA,EAAc,UAAa,UAClCA,EAAc,WAAa,IAC3BC,EAAkBD,EAAc,aAAa,EAErD,CAIO,SAASE,GAAgBF,EAAwC,CACtE,OACEA,EAAc,OAAS,yBAA2BD,EAAYC,CAAa,CAE/E,CAIO,SAASG,GAAiBH,EAAwC,CACvE,GAAM,CAAE,kBAAAI,CAAkB,EAAIJ,EAC9B,OAAOD,EAAYC,CAAa,GAC9BR,EAAcY,CAAiB,GAC/BA,EAAkB,OAAS,EACzBA,EACA,MACN,CAMO,SAASC,GAAuBT,EAAuB,CAC5D,OAAOE,EAA2BF,CAAK,EAAE,CAAC,CAC5C,CAGO,SAASU,GAAqBV,EAAuB,CAC1D,OAAOW,EAAmBX,CAAK,EAAE,OACnC,CAEO,SAASY,GACdC,EACAC,EACA,CACA,OAAOD,IAAsB,QAAaA,IAAsBC,EAC5D,OACA,sCAAsCD,CAAiB,4BAA4BA,CAAiB,EAC1G,CCpEO,SAASE,EAASC,EAAgBC,EAAuB,CAC9D,OAAO,OAAQD,EAAc,KAAQ,WAChCA,EAAc,IAAIC,CAAI,EACtBD,EAA8BC,CAAI,CACzC,CAQO,SAASC,EAAkCC,EAAaC,EAAe,CAC5E,OAAOD,EAAO,KAAKE,GAAKA,EAAE,UAAYD,CAAK,CAC7C,CAGO,SAASE,EAAWD,EAAgB,CACzC,MAAO,GAAGA,EAAE,OAAO,IAAIA,EAAE,MAAQ,EAAE,EACrC,CCgBO,IAAME,EAAuB,IAAI,IAAI,CAC1C,aACA,kBACA,gBACA,aACA,iBACF,CAAC,EAEYC,EACX,gEAEK,SAASC,GACdC,EACAC,EACA,CACA,IAAMC,EAASD,EAAQE,EAAWH,EAAQC,CAAK,EAAI,OACnD,OAAIC,GAGeF,EAAO,OAAOI,GAAKP,EAAqB,IAAIO,EAAE,WAAW,CAAC,EAC3D,KAAKA,GAAKN,EAAkB,KAAKO,EAAWD,CAAC,CAAC,CAAC,CACnE,CAKA,IAAME,EAAc,2BAEpB,SAASC,EAAWC,EAAgB,CAClC,IAAMC,EAAOC,EAASF,EAAG,MAAM,EAC/B,GAAI,SAAOC,GAAS,UAAY,CAACH,EAAY,KAAKG,CAAI,GAGtD,OAAO,OAAO,YACZA,EAAK,MAAM,GAAG,EAAE,IAAIE,GAAQ,CAC1B,IAAMC,EAAID,EAAK,QAAQ,GAAG,EAC1B,MAAO,CAACA,EAAK,MAAM,EAAGC,CAAC,EAAGD,EAAK,MAAMC,EAAI,CAAC,CAAC,CAC7C,CAAC,CACH,CACF,CAIA,SAASC,EAAML,EAAgBC,EAAuB,CACpD,IAAMK,EAAMJ,EAASF,EAAGC,CAAI,EAC5B,OAAIK,IAAQ,OACHA,EAEIJ,EAASF,EAAG,MAAM,IACjBC,CAAI,GAAKF,EAAWC,CAAC,IAAIC,CAAI,CAC7C,CAEA,IAAMM,EAAe,CACnB,MACA,SACA,KACA,SACA,QACA,WACA,WACF,EACMC,EAAgB,CACpB,MACA,SACA,SACA,gBACA,OACA,YACF,EACMC,EAAc,CAAC,OAAQ,QAAS,QAAS,KAAM,OAAQ,IAAI,EAKjE,SAASC,EAAMV,EAAgBW,EAAiB,CAC9C,QAAWV,KAAQU,EAAO,CACxB,IAAMC,EAAQP,EAAML,EAAGC,CAAI,EACrBY,EAAM,QAAQ,MAAM,QAAQD,CAAK,EAAIA,EAAM,CAAC,EAAIA,IAAU,EAAE,EAC/D,MAAM,GAAG,EAAE,CAAC,EACZ,KAAK,EACR,GAAIC,IAAQ,IAAMA,IAAQ,IACxB,OAAOA,CAEX,CAEF,CAEA,IAAMC,EAAQ,yBAGP,SAASC,EAAaf,EAAgB,CAC3C,IAAMgB,EAAS,OAAON,EAAMV,EAAGQ,CAAa,CAAC,EAC7C,GAAI,OAAO,SAASQ,CAAM,GAAKA,EAAS,EACtC,OAAO,KAAK,MAAMA,CAAM,EAE1B,IAAMC,EAAQP,EAAMV,EAAGO,CAAY,EACnC,OAAOU,GAASH,EAAM,KAAKG,CAAK,EAAIA,EAAM,OAAS,MACrD,CAKA,SAASC,EAAQN,EAAgB,CAI/B,OAHuB,MAAM,QAAQA,CAAK,EACtCA,EACA,OAAOA,GAAS,EAAE,EAAE,MAAM,GAAG,GACtB,IAAIC,GAAO,CACpB,IAAMM,EACJN,IAAQ,IAAMA,IAAQ,MAAQA,IAAQ,OAAY,IAAM,OAAOA,CAAG,EACpE,OAAO,OAAO,SAASM,CAAC,EAAIA,EAAI,MAClC,CAAC,CACH,CAEA,SAASC,EAAQR,EAAgB,CAI/B,OAHuB,MAAM,QAAQA,CAAK,EACtCA,EACA,OAAOA,GAAS,EAAE,EAAE,MAAM,GAAG,GACtB,IAAIC,GAAO,CACpB,IAAMQ,EAAO,OAAOR,GAAO,EAAE,EAAE,KAAK,EACpC,OAAOQ,IAAS,IAAMA,IAAS,IAAM,OAAYA,CACnD,CAAC,CACH,CAEA,IAAMC,EAAgB,WAMtB,SAASC,EAAevB,EAAgB,CACtC,IAAMwB,EAAOJ,EAAQlB,EAASF,EAAG,KAAK,CAAC,EACvC,GAAI,CAACwB,EAAK,SAASF,CAAa,EAC9B,OAEF,IAAMG,EAAKP,EAAQb,EAAML,EAAG,IAAI,CAAC,EAC3B0B,EAAMN,EAAQf,EAAML,EAAG,KAAK,CAAC,EAC7B2B,EAAMT,EAAQb,EAAML,EAAG,KAAK,CAAC,EAC7B4B,EAAMV,EAAQb,EAAML,EAAG,KAAK,CAAC,EAC7B6B,EAAKX,EAAQb,EAAML,EAAG,IAAI,CAAC,EAC7B8B,EAAI,EACR,OAAON,EAAK,IAAI,CAACO,EAAK3B,IAAM,CAC1B,IAAMe,EAAIM,EAAGrB,CAAC,IAAM2B,IAAQT,EAAgB,EAAI,GAC5CU,EAAK,EACLC,EAAQ,EACZ,QAASC,EAAI,EAAGA,EAAIf,EAAGe,IAAKJ,IAAK,CAC/B,IAAMb,EAAQS,EAAII,CAAC,EACbK,EACJR,EAAIG,CAAC,IAAMb,GAASH,EAAM,KAAKG,CAAK,EAAIA,EAAM,OAAS,QACnDmB,EAAQR,EAAIE,CAAC,EACbO,EACJR,EAAGC,CAAC,IACHK,GAAcC,IAAU,OACrB,KAAK,MAAMD,EAAaC,CAAK,EAC7B,QACFC,IAAU,SACZL,GAAMK,EACNJ,IAEJ,CACA,OAAOF,IAAQT,GAAiBH,EAAI,GAAKc,IAAUd,EAAIa,EAAK,MAC9D,CAAC,CACH,CAKA,SAASM,EACPC,EACAC,EACAC,EACA,CACA,IAAMC,EAASH,GAAI,SAAS,GAAG,EAC/B,OAAQA,GAAM,IAAI,MAAM,MAAM,EAAE,QAAQ,CAACI,EAAOb,IAAoB,CAClE,IAAM1B,EAAIuC,IAAU,GAAK,IAAM,OAAOA,CAAK,EACrCX,EAAK5B,EAAI,EAAIoC,EAASpC,EAAI,CAAC,EAAIqC,EACrC,MAAI,CAAC,OAAO,UAAUrC,CAAC,GAAK4B,IAAO,OAC1B,CAAC,EAEH,CAAC,CAAE,GAAAA,EAAI,GAAIU,EAAS,CAAE,UAAWZ,EAAI,CAAE,EAAI,CAAC,CAAG,CAAC,CACzD,CAAC,CACH,CAEA,SAASc,EACP5C,EACAwC,EACAC,EACA,CACA,IAAMI,EAAU3C,EAASF,EAAG,SAAS,EAE/B8C,EAAuC,CAAC,EAC9C,OAAW,CAACC,EAAQC,CAAM,IAAK,OAAO,QAAQH,GAAW,CAAC,CAAC,EAAG,CAC5D,IAAMI,EAAQ/B,EAAQ8B,EAAO,EAAE,EACzBE,EAAUhC,EAAQ8B,EAAO,EAAE,EAAE,QAAQ,CAAChB,EAAI5B,IAC9C4B,IAAO,QAAaA,EAAK,EACrB,CAACiB,EAAM7C,CAAC,IAAM,OAAY,CAAE,GAAA4B,CAAG,EAAI,CAAE,GAAAA,EAAI,cAAeiB,EAAM7C,CAAC,CAAE,CAAC,EAClE,CAAC,CACP,EACM+C,EACJD,EAAQ,OAAS,GAAK,CAACV,EACnBU,EACAZ,EAAUlB,EAAQ4B,EAAO,EAAE,EAAE,CAAC,EAAGR,EAAUC,CAAW,EACxDU,EAAM,OAAS,IACjBL,EAAOC,CAAM,EAAII,EAErB,CACA,OAAO,OAAO,KAAKL,CAAM,EAAE,OAAS,EAAIA,EAAS,MACnD,CAIA,SAASM,EAAOpD,EAAgBqD,EAAiB,CAC/C,IAAMC,EAAQjD,EAAML,EAAG,OAAO,EACxBuD,EAAMlD,EAAML,EAAG,KAAK,EACpBwD,EAAQtC,EAAQb,EAAML,EAAG,OAAO,CAAC,EAAE,CAAC,EAC1C,OAAOqD,GAAUG,IAAU,OACvB,CAAE,MAAOF,EAAQ,EAAG,IAAKA,EAAQ,EAAIE,CAAM,EAC3C,CAAE,MAAAF,EAAO,IAAAC,CAAI,CACnB,CAEO,SAASE,GAAiBC,EAAwC,CACvE,IAAMC,EAAwB,CAAC,EAC/B,QAAW3D,KAAK0D,EAAU,CACxB,IAAMlB,EAAWjB,EAAevB,CAAC,EAC3B,CAAE,MAAAsD,EAAO,IAAAC,CAAI,EAAIH,EAAOpD,EAAGwC,IAAa,MAAS,EACjDoB,EAAO7C,EAAaf,CAAC,EAC3B,GAAI,EAAEuD,EAAMD,IAAUM,IAAS,OAC7B,SAEF,IAAMC,EAAUxD,EAAML,EAAG,SAAS,EAC5BiB,EAAQP,EAAMV,EAAGO,CAAY,EAC7BuD,EAASpD,EAAMV,EAAGS,CAAW,EACnCkD,EAAO,KAAK,CACV,IAAK,GAAGE,CAAO,IAAIP,CAAK,IAAIC,CAAG,GAC/B,MACGO,GAAU,CAAChE,EAAY,KAAKgE,CAAM,EAAIA,EAAS,UAC/C7C,GAASA,EAAM,QAAU,GACtB,IAAIA,CAAK,KACT,GAAG4C,CAAO,KAAKP,EAAQ,GAAG,eAAe,OAAO,CAAC,IAAIC,EAAI,eAAe,OAAO,CAAC,IACtF,QAAAM,EACA,MAAAP,EACA,IAAAC,EACA,KAAAK,EACA,MAAA3C,EACA,MAAO2B,EAAQ5C,EAAGwC,EAAUe,EAAMD,CAAK,CACzC,CAAC,CACH,CACA,OAAOK,EAAO,KAAK,CAACI,EAAGC,IAAMD,EAAE,MAAQC,EAAE,KAAK,CAChD,CC3RA,SAASC,EAAgBC,EAAW,CAClC,IAAMC,EAAM,CAAC,EACb,QAAWC,IAAM,CAAC,GAAGF,CAAS,EAAE,KAAK,CAACG,EAAGC,IAAMD,EAAE,MAAQC,EAAE,KAAK,EAAG,CACjE,IAAMC,EAAOJ,EAAI,GAAG,EAAE,EAClBI,GAAQH,EAAG,OAASG,EAAK,IAC3BA,EAAK,IAAM,KAAK,IAAIA,EAAK,IAAKH,EAAG,GAAG,EAEpCD,EAAI,KAAK,CAAE,GAAGC,CAAG,CAAC,CAEtB,CACA,OAAOD,CACT,CA2GA,SAASK,EAAuBC,EAAO,CACrC,IAAMC,EAAM,CAAC,EACPC,EAAuB,IAAI,IACjC,QAAWC,IAAK,CAAC,GAAGH,CAAK,EAAE,KAAK,CAACI,EAAGC,IAAMD,EAAE,MAAQC,EAAE,KAAK,EAAG,CAC5D,IAAMC,EAAM,GAAGH,EAAE,OAAO,IAAIA,EAAE,MAAM,IAAIA,EAAE,IAAI,GACxCI,EAAOL,EAAK,IAAII,CAAG,EACzB,GAAIC,GAAQJ,EAAE,MAAQI,EAAK,IACzBA,EAAK,IAAM,KAAK,IAAIA,EAAK,IAAKJ,EAAE,GAAG,EACnCI,EAAK,MAAQC,EAAgB,CAAC,GAAGD,EAAK,MAAO,GAAGJ,EAAE,KAAK,CAAC,MACnD,CACL,IAAMM,EAAO,CAAE,GAAGN,EAAG,MAAOK,EAAgBL,EAAE,KAAK,CAAE,EACrDF,EAAI,KAAKQ,CAAI,EACbP,EAAK,IAAII,EAAKG,CAAI,CACpB,CACF,CACA,OAAOR,CACT,CC1HO,IAAMS,EAAqB,IAAI,IAAI,CACxC,mBACA,cACA,kBACA,aACA,kBACA,aACA,gBACA,eACF,CAAC,EAEKC,EAAkB,0CAIlBC,EAAoB,IAAI,IAAI,CAAC,kBAAmB,YAAY,CAAC,EAO5D,SAASC,GACdC,EACAC,EACA,CACA,IAAMC,EAASD,EAAQE,EAAWH,EAAQC,CAAK,EAAI,OACnD,GAAIC,EACF,OAAOA,EAET,IAAME,EAAaJ,EAAO,OACxBK,GACET,EAAmB,IAAIS,EAAE,WAAW,GACpC,CAACC,EAAkB,KAAKC,EAAWF,CAAC,CAAC,CACzC,EACA,OACED,EAAW,KAAKC,GAAKR,EAAgB,KAAKU,EAAWF,CAAC,CAAC,CAAC,GACxDD,EAAW,KAAKC,GAAK,CAACP,EAAkB,IAAIO,EAAE,WAAW,CAAC,CAE9D,CAEA,IAAMG,EAAgB,qBAIf,SAASC,GAAeC,EAAgC,CAC7D,OAAOA,GAASF,EAAc,KAAKD,EAAWG,CAAK,CAAC,EAAI,KAAO,MACjE,CAYO,SAASC,GAAYC,EAAcC,EAA6B,CACrE,IAAMC,EAAQF,EAAkB,QAAQ,KACtCP,GAAKU,EAAeV,EAAE,cAAe,SAAS,IAAMQ,CACtD,GAAG,SAAS,CAAC,EACb,OAAOC,EACDC,EAAeD,EAAK,cAAe,QAAQ,GAC3C,CAAC,EACH,CAAC,CACP,CAKA,IAAME,EAAuB,IAAI,IAAI,CACnC,aACA,SACA,SACA,cACA,UACF,CAAC,EAIKC,GAAa,IAAI,IAAI,CACzB,OACA,MACA,iBACA,kBACA,KACF,CAAC,EAED,SAASC,EAAQC,EAAgBC,EAAwC,CACvE,IAAMC,EAAOC,EAASH,EAAG,MAAM,EAC3B,OAAOE,GAAS,UAAYJ,GAAW,IAAII,CAAI,GACjDD,EAAK,KAAK,CACR,MAAOE,EAASH,EAAG,OAAO,EAC1B,IAAKG,EAASH,EAAG,KAAK,CACxB,CAAC,EAEH,IAAMI,EAAWD,EAASH,EAAG,aAAa,EAC1C,QAAWK,KAASD,GAAY,CAAC,EAC/BL,EAAQM,EAAOJ,CAAI,CAEvB,CAUO,SAASK,GAAeC,EAAsC,CACnE,IAAMC,EAAqB,CAAC,EAC5B,QAAWR,KAAKO,EAAU,CACxB,IAAME,EACHN,EAASH,EAAG,WAAW,GACvBG,EAASH,EAAG,MAAM,GAClBG,EAASH,EAAG,MAAM,GAClBG,EAASH,EAAG,SAAS,EAClBU,EAAQP,EAASH,EAAG,OAAO,EAC3BW,EAAMR,EAASH,EAAG,KAAK,EAC7B,GACE,CAACS,GACD,EAAEE,EAAMD,IACRb,EAAqB,IAAIM,EAASH,EAAG,MAAM,CAAW,EAEtD,SAEF,IAAMY,EAA0C,CAAC,EACjDb,EAAQC,EAAGY,CAAK,EAChBJ,EAAM,KAAK,CACT,KAAAC,EACA,QAASN,EAASH,EAAG,SAAS,EAC9B,MAAAU,EACA,IAAAC,EACA,OAASR,EAASH,EAAG,QAAQ,GAA4B,EACzD,MAAOY,EAAM,OAASC,EAAgBD,CAAK,EAAI,CAAC,CAAE,MAAAF,EAAO,IAAAC,CAAI,CAAC,CAChE,CAAC,CACH,CACA,OAAOG,EAAuBN,CAAK,CACrC,CC5JA,IAAMO,EAAO,eAAe,eAAe,EACrCC,GAAOC,GACXF,GAAQ,MAAQE,KAAQ,OAAOF,CAAI,EAC/BA,EAAKE,CAAI,EACT,OAAO,OACL,UAAY,CACV,MAAM,IAAI,MACR,kCAAoCA,EAAO,+HAC7C,CACF,EACA,CAAE,mBAAoBA,CAAK,CAC7B,EAGC,IAAMC,GAA6BC,GAAK,YAAY,EACpDC,GAAQC,GAAQA,EAAK,WAAaA,EAAK,QAAUA",
   "names": ["isStringArray", "value", "item", "trackLanes", "track", "lanes", "getConfAssemblyNamesOrNone", "walkIndexed", "adapterConfig", "snapshotNamesFile", "cutsByHaplotype", "configHaplotypes", "defaultHaplotypes", "graphReferenceAssembly", "trackAdapterSnapshot", "toTrackConfigEntry", "offReferenceProblem", "referenceAssembly", "assemblyName", "ownField", "f", "name", "namedTrack", "tracks", "named", "t", "trackLabel", "REPEAT_ADAPTER_TYPES", "REPEAT_TRACK_HINT", "pickRepeatTrack", "tracks", "named", "chosen", "namedTrack", "t", "trackLabel", "PACKED_NAME", "packedName", "f", "name", "ownField", "pair", "i", "field", "top", "MOTIF_FIELDS", "PERIOD_FIELDS", "NAME_FIELDS", "first", "names", "value", "one", "IUPAC", "repeatUnitOf", "period", "motif", "numbers", "n", "strings", "text", "TANDEM_REPEAT", "tandemAlleleBp", "alts", "rn", "rus", "rul", "ruc", "rb", "k", "alt", "bp", "known", "j", "unitLength", "count", "runBp", "genotyped", "gt", "alleleBp", "referenceBp", "phased", "index", "callsOf", "samples", "called", "sample", "fields", "reads", "lengths", "calls", "spanOf", "tandem", "start", "end", "svlen", "repeatArraysFrom", "features", "arrays", "unit", "refName", "stated", "a", "b", "mergedIntervals", "intervals", "out", "iv", "a", "b", "last", "mergeOverlappingByName", "genes", "out", "open", "g", "a", "b", "key", "last", "mergedIntervals", "gene", "GENE_ADAPTER_TYPES", "GENE_TRACK_HINT", "BED_ADAPTER_TYPES", "pickGeneTrack", "tracks", "named", "chosen", "namedTrack", "candidates", "t", "REPEAT_TRACK_HINT", "trackLabel", "TE_TRACK_HINT", "annotationNoun", "track", "laneFilters", "view", "trackId", "lane", "readConfObject", "WHOLE_SEQUENCE_TYPES", "EXON_PARTS", "exonsOf", "f", "into", "type", "ownField", "children", "child", "geneModelsFrom", "features", "genes", "name", "start", "end", "exons", "mergedIntervals", "mergeOverlappingByName", "host", "read", "name", "makeStyles", "read", "mui_default", "host"]

package/dist/chunks/{chunk-5X3OZSDO.js → chunk-OHQ3WIPI.js}

@@ -1,2 +1,2 @@
-import{l as b,m as $,n as S,p as E,q as x,r as T}from"./chunk-JTOW3TOE.js";function A(e){let{refName:n,start:t,end:r}=e??{};return typeof n=="string"&&Number.isFinite(t)&&Number.isFinite(r)&&t<r?{refName:n,start:t,end:r}:void 0}function D(e){let n=Number(e);return e!=="auto"&&Number.isFinite(n)?n:"auto"}var w=e=>e.toLocaleString("en-US"),v=({refName:e,start:n,end:t})=>`${e}:${w(n+1)}-${w(t)}`,L=e=>`Forms of ${v(e)}: `;var C={deletion:{svType:"DEL",type:"deletion",alt:"<DEL>"},insertion:{svType:"INS",type:"insertion",alt:"<INS>"},duplication:{svType:"DUP",type:"tandem_duplication",alt:"<DUP:TANDEM>"},replacement:{svType:"CPX",type:"complex_substitution",alt:"<CPX>"},inversion:{svType:"INV",type:"inversion",alt:"<INV>",consequence:"inversion"},shift:{svType:"CPX",type:"complex_structural_alteration",alt:"<CPX>",consequence:"shift"},net:{svType:"CPX",type:"complex_structural_alteration",alt:"<CPX>",consequence:"net"}},_=e=>e.lopsided??(e.delta<0?"deletion":"insertion"),P=e=>C[e.kind].consequence??(_(e)==="deletion"?"loss":"gain"),f=e=>`F${e+1}`,O="other",l=8;function F(e,n){let t=100*e/n;return t>0&&t<1?"<1%":`${Math.round(t)}%`}var d=({forms:e},n)=>e.length>n+1?Math.max(0,n):e.length,m=e=>e.reduce((n,t)=>n+t.members.length,0);function U(e,n=l){let t=d(e,n),r=e.forms.slice(t);return[...e.forms.slice(0,t).map((s,a)=>({name:f(a),label:`${F(s.members.length,e.placed)} \xB7 ${T(s,e)}`,haplotypes:s.members.length,forms:1})),...r.length>0?[{name:O,label:`other forms \xB7 ${F(m(r),e.placed)}`,haplotypes:m(r),forms:r.length}]:[]]}var N=5;function k(e){let n=e.slice(0,N).join(", "),t=e.length-N;return t>0?`${n} and ${t} more`:n}var u=e=>`${e} haplotype${e===1?"":"s"}`;function j(e,n=l){let{abridged:t,unplaced:r,forms:s}=e,a=d(e,n),i=s.slice(a);return[...i.length>0?[`${i.length} smaller forms, ${u(m(i))}, share the empty "other forms" row; maxForms sets how many forms get a row of their own`]:[],...t.length>0?[`${u(t.length)} kept an abridged walk past the forms cut's step budget, which shows as a net change over its span: ${k(t)}`]:[],...r.length>0?[`${u(r.length)} ${r.length===1?"has":"have"} no walk over the pinned window, so no form: ${k(r)}`]:[]]}function V(e,n=l){return Object.fromEntries(e.forms.slice(0,d(e,n)).map((t,r)=>[f(r),"0"]))}function q({copied:e,refStart:n,refEnd:t}){let[r,s]=e??[n,t];return{start:r,end:Math.max(s,r+1)}}var R=(e,n)=>e===n?"1":e===$||e===S?".":"0";function K(e,n=l){let{sites:t,forms:r,placed:s}=e,a=d(e,n);return t.flatMap((i,g)=>i.edge?[]:i.states.flatMap(c=>{if(c.key===b)return[];let h=r.map(o=>x(e,o,g)),y=Object.fromEntries(h.slice(0,a).map((o,p)=>[f(p),R(o,c.key)])),M=m(r.filter((o,p)=>h[p]===c.key));return Object.values(y).includes("1")?c.marks.map((o,p)=>({id:`${g}:${c.key}:${p}`,...q(o),name:E(o),description:`${M} of ${u(s)}`,...C[o.kind],consequence:P(o),mark:o,genotypes:y})):[]}))}export{A as a,D as b,v as c,L as d,l as e,U as f,j as g,V as h,K as i};
-//# sourceMappingURL=chunk-5X3OZSDO.js.map
+import{l as b,m as $,n as S,p as E,q as x,r as T}from"./chunk-EENENDGZ.js";function A(e){let{refName:n,start:t,end:r}=e??{};return typeof n=="string"&&Number.isFinite(t)&&Number.isFinite(r)&&t<r?{refName:n,start:t,end:r}:void 0}function D(e){let n=Number(e);return e!=="auto"&&Number.isFinite(n)?n:"auto"}var w=e=>e.toLocaleString("en-US"),v=({refName:e,start:n,end:t})=>`${e}:${w(n+1)}-${w(t)}`,L=e=>`Forms of ${v(e)}: `;var C={deletion:{svType:"DEL",type:"deletion",alt:"<DEL>"},insertion:{svType:"INS",type:"insertion",alt:"<INS>"},duplication:{svType:"DUP",type:"tandem_duplication",alt:"<DUP:TANDEM>"},replacement:{svType:"CPX",type:"complex_substitution",alt:"<CPX>"},inversion:{svType:"INV",type:"inversion",alt:"<INV>",consequence:"inversion"},shift:{svType:"CPX",type:"complex_structural_alteration",alt:"<CPX>",consequence:"shift"},net:{svType:"CPX",type:"complex_structural_alteration",alt:"<CPX>",consequence:"net"}},_=e=>e.lopsided??(e.delta<0?"deletion":"insertion"),P=e=>C[e.kind].consequence??(_(e)==="deletion"?"loss":"gain"),f=e=>`F${e+1}`,O="other",l=8;function F(e,n){let t=100*e/n;return t>0&&t<1?"<1%":`${Math.round(t)}%`}var d=({forms:e},n)=>e.length>n+1?Math.max(0,n):e.length,m=e=>e.reduce((n,t)=>n+t.members.length,0);function U(e,n=l){let t=d(e,n),r=e.forms.slice(t);return[...e.forms.slice(0,t).map((s,a)=>({name:f(a),label:`${F(s.members.length,e.placed)} \xB7 ${T(s,e)}`,haplotypes:s.members.length,forms:1})),...r.length>0?[{name:O,label:`other forms \xB7 ${F(m(r),e.placed)}`,haplotypes:m(r),forms:r.length}]:[]]}var N=5;function k(e){let n=e.slice(0,N).join(", "),t=e.length-N;return t>0?`${n} and ${t} more`:n}var u=e=>`${e} haplotype${e===1?"":"s"}`;function j(e,n=l){let{abridged:t,unplaced:r,forms:s}=e,a=d(e,n),i=s.slice(a);return[...i.length>0?[`${i.length} smaller forms, ${u(m(i))}, share the empty "other forms" row; maxForms sets how many forms get a row of their own`]:[],...t.length>0?[`${u(t.length)} kept an abridged walk past the forms cut's step budget, which shows as a net change over its span: ${k(t)}`]:[],...r.length>0?[`${u(r.length)} ${r.length===1?"has":"have"} no walk over the pinned window, so no form: ${k(r)}`]:[]]}function V(e,n=l){return Object.fromEntries(e.forms.slice(0,d(e,n)).map((t,r)=>[f(r),"0"]))}function q({copied:e,refStart:n,refEnd:t}){let[r,s]=e??[n,t];return{start:r,end:Math.max(s,r+1)}}var R=(e,n)=>e===n?"1":e===$||e===S?".":"0";function K(e,n=l){let{sites:t,forms:r,placed:s}=e,a=d(e,n);return t.flatMap((i,g)=>i.edge?[]:i.states.flatMap(c=>{if(c.key===b)return[];let h=r.map(o=>x(e,o,g)),y=Object.fromEntries(h.slice(0,a).map((o,p)=>[f(p),R(o,c.key)])),M=m(r.filter((o,p)=>h[p]===c.key));return Object.values(y).includes("1")?c.marks.map((o,p)=>({id:`${g}:${c.key}:${p}`,...q(o),name:E(o),description:`${M} of ${u(s)}`,...C[o.kind],consequence:P(o),mark:o,genotypes:y})):[]}))}export{A as a,D as b,v as c,L as d,l as e,U as f,j as g,V as h,K as i};
+//# sourceMappingURL=chunk-OHQ3WIPI.js.map

package/dist/chunks/{chunk-VP6AGIRF.js → chunk-OXU7F4BR.js}

@@ -1,2 +1,2 @@
-import{a as B}from"./chunk-EINURNZ6.js";import{h as b,i as o,k as f,z as m}from"./chunk-JTOW3TOE.js";import{h as u}from"./chunk-OMF5XFKR.js";var O={steps:"walkStepBudget",bytes:"walkByteBudget"},y=64,k=class{constructor(e,t){this.file=e;this.adapter=t;this.reader=new f(e)}async haplotypeNames(e={}){let{haplotypes:t}=await this.reader.header(e);return t.length>0?t:void 0}budgets(){return{stepBudget:this.adapter.getConf("walkStepBudget"),byteBudget:this.adapter.getConf("walkByteBudget"),budgetNames:O}}async subgraph(e,t,{signal:i,haplotypes:d,walkRows:s,expand:r,expandSamples:n}){let g=this.budgets(),p=o(d?.map(a=>u(this.adapter,a)),e),l=s&&p&&(d?.length??0)<=y?p:void 0,c=s&&n?.length&&n.length<=y?o(n.map(a=>u(this.adapter,a)),e):void 0,h=r?.length?a=>r.includes(a):void 0,{graph:w,kept:A,fragments:S,skips:x}=await this.reader.cut(e,t,{...g,stepBudget:s?1/0:g.stepBudget,signal:i,keep:p,...l||c||h?{expand:a=>!!l?.(a)||!!c?.(a)||!!h?.(a)}:{}});return B(w.tables(A,S,x),t,s)}async referenceNodes(e,t,i){let d=[];await m(this.file,e,await this.reader.queryStart(t.start,{...i,refName:e,end:t.end}),t.end,{signal:i.signal,lineCallback:r=>{let n=r.split("	");n[3]==="ref"&&d.push(n)}});let s=new Set;return b(d).filter(r=>r.refName!==e||r.end<=t.start||r.start>=t.end||s.has(r.id)?!1:(s.add(r.id),!0))}};export{k as a};
-//# sourceMappingURL=chunk-VP6AGIRF.js.map
+import{a as B}from"./chunk-SYKOZDP6.js";import{h as b,i as o,k as f,z as m}from"./chunk-EENENDGZ.js";import{h as u}from"./chunk-L372SDUG.js";var O={steps:"walkStepBudget",bytes:"walkByteBudget"},y=64,k=class{constructor(e,t){this.file=e;this.adapter=t;this.reader=new f(e)}async haplotypeNames(e={}){let{haplotypes:t}=await this.reader.header(e);return t.length>0?t:void 0}budgets(){return{stepBudget:this.adapter.getConf("walkStepBudget"),byteBudget:this.adapter.getConf("walkByteBudget"),budgetNames:O}}async subgraph(e,t,{signal:i,haplotypes:d,walkRows:s,expand:r,expandSamples:n}){let g=this.budgets(),p=o(d?.map(a=>u(this.adapter,a)),e),l=s&&p&&(d?.length??0)<=y?p:void 0,c=s&&n?.length&&n.length<=y?o(n.map(a=>u(this.adapter,a)),e):void 0,h=r?.length?a=>r.includes(a):void 0,{graph:w,kept:A,fragments:S,skips:x}=await this.reader.cut(e,t,{...g,stepBudget:s?1/0:g.stepBudget,signal:i,keep:p,...l||c||h?{expand:a=>!!l?.(a)||!!c?.(a)||!!h?.(a)}:{}});return B(w.tables(A,S,x),t,s)}async referenceNodes(e,t,i){let d=[];await m(this.file,e,await this.reader.queryStart(t.start,{...i,refName:e,end:t.end}),t.end,{signal:i.signal,lineCallback:r=>{let n=r.split("	");n[3]==="ref"&&d.push(n)}});let s=new Set;return b(d).filter(r=>r.refName!==e||r.end<=t.start||r.start>=t.end||s.has(r.id)?!1:(s.add(r.id),!0))}};export{k as a};
+//# sourceMappingURL=chunk-OXU7F4BR.js.map

package/dist/chunks/{chunk-TNEXOJ5F.js → chunk-QB5JERW4.js}

@@ -1,2 +1,2 @@
 function o(t){return t===void 0||t==="*"?void 0:t}function s(t){let e=t.split("	");return{refName:e[0],start:+e[1],end:+e[2],segmentCount:+e[3],pathCount:+e[4],inversion:e[5]==="1",shortestAlleleLength:+e[6],longestAlleleLength:+e[7],segments:e[11],shortestAllele:o(e[12]),longestAllele:o(e[13])}}function u(t,e){return t.key!==void 0||e.key!==void 0?t.key===e.key:t.refName===e.refName&&t.start===e.start&&t.end===e.end}function i(t){return t.key??`${t.refName}:${t.start}-${t.end}`}function b(t){let{shortestAlleleLength:e,longestAlleleLength:n}=t;return e===n?`${n.toLocaleString()} bp`:`${e.toLocaleString()}-${n.toLocaleString()} bp`}var r=2147483647;function a(t){let{pathCount:e,segmentCount:n,inversion:l}=t;return[`${n} segments`,e===r?"more paths than gfatools counts":`up to ${e.toLocaleString()} paths`,...l?["inversion"]:[]].join(", ")}export{s as a,u as b,i as c,b as d,r as e,a as f};
-//# sourceMappingURL=chunk-TNEXOJ5F.js.map
+//# sourceMappingURL=chunk-QB5JERW4.js.map

package/dist/chunks/{chunk-TNEXOJ5F.js.map → chunk-QB5JERW4.js.map}

@@ -1,6 +1,6 @@
 {
   "version": 3,
-  "sources": ["../../node_modules/.pnpm/@jbrowse+bandage-core@12.2.0/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-FX4RDMDN.js"],
+  "sources": ["../../node_modules/.pnpm/@jbrowse+bandage-core@12.3.0/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-FX4RDMDN.js"],
   "sourcesContent": ["// src/bubbles/bubbleLine.ts\nfunction sequence(field) {\n  return field === void 0 || field === \"*\" ? void 0 : field;\n}\nfunction parseBubbleLine(line) {\n  const cols = line.split(\"\t\");\n  return {\n    refName: cols[0],\n    start: +cols[1],\n    end: +cols[2],\n    segmentCount: +cols[3],\n    pathCount: +cols[4],\n    inversion: cols[5] === \"1\",\n    shortestAlleleLength: +cols[6],\n    longestAlleleLength: +cols[7],\n    segments: cols[11],\n    shortestAllele: sequence(cols[12]),\n    longestAllele: sequence(cols[13])\n  };\n}\nfunction sameBubble(a, b) {\n  return a.key !== void 0 || b.key !== void 0 ? a.key === b.key : a.refName === b.refName && a.start === b.start && a.end === b.end;\n}\nfunction bubbleKey(b) {\n  return b.key ?? `${b.refName}:${b.start}-${b.end}`;\n}\nfunction bubbleLabel(bubble) {\n  const { shortestAlleleLength: min, longestAlleleLength: max } = bubble;\n  return min === max ? `${max.toLocaleString()} bp` : `${min.toLocaleString()}-${max.toLocaleString()} bp`;\n}\nvar SATURATED_PATH_COUNT = 2147483647;\nfunction bubbleDescription(bubble) {\n  const { pathCount, segmentCount, inversion } = bubble;\n  return [\n    `${segmentCount} segments`,\n    pathCount === SATURATED_PATH_COUNT ? \"more paths than gfatools counts\" : `up to ${pathCount.toLocaleString()} paths`,\n    ...inversion ? [\"inversion\"] : []\n  ].join(\", \");\n}\n\nexport {\n  parseBubbleLine,\n  sameBubble,\n  bubbleKey,\n  bubbleLabel,\n  SATURATED_PATH_COUNT,\n  bubbleDescription\n};\n"],
   "mappings": "AACA,SAASA,EAASC,EAAO,CACvB,OAAOA,IAAU,QAAUA,IAAU,IAAM,OAASA,CACtD,CACA,SAASC,EAAgBC,EAAM,CAC7B,IAAMC,EAAOD,EAAK,MAAM,GAAG,EAC3B,MAAO,CACL,QAASC,EAAK,CAAC,EACf,MAAO,CAACA,EAAK,CAAC,EACd,IAAK,CAACA,EAAK,CAAC,EACZ,aAAc,CAACA,EAAK,CAAC,EACrB,UAAW,CAACA,EAAK,CAAC,EAClB,UAAWA,EAAK,CAAC,IAAM,IACvB,qBAAsB,CAACA,EAAK,CAAC,EAC7B,oBAAqB,CAACA,EAAK,CAAC,EAC5B,SAAUA,EAAK,EAAE,EACjB,eAAgBJ,EAASI,EAAK,EAAE,CAAC,EACjC,cAAeJ,EAASI,EAAK,EAAE,CAAC,CAClC,CACF,CACA,SAASC,EAAWC,EAAGC,EAAG,CACxB,OAAOD,EAAE,MAAQ,QAAUC,EAAE,MAAQ,OAASD,EAAE,MAAQC,EAAE,IAAMD,EAAE,UAAYC,EAAE,SAAWD,EAAE,QAAUC,EAAE,OAASD,EAAE,MAAQC,EAAE,GAChI,CACA,SAASC,EAAUD,EAAG,CACpB,OAAOA,EAAE,KAAO,GAAGA,EAAE,OAAO,IAAIA,EAAE,KAAK,IAAIA,EAAE,GAAG,EAClD,CACA,SAASE,EAAYC,EAAQ,CAC3B,GAAM,CAAE,qBAAsBC,EAAK,oBAAqBC,CAAI,EAAIF,EAChE,OAAOC,IAAQC,EAAM,GAAGA,EAAI,eAAe,CAAC,MAAQ,GAAGD,EAAI,eAAe,CAAC,IAAIC,EAAI,eAAe,CAAC,KACrG,CACA,IAAIC,EAAuB,WAC3B,SAASC,EAAkBJ,EAAQ,CACjC,GAAM,CAAE,UAAAK,EAAW,aAAAC,EAAc,UAAAC,CAAU,EAAIP,EAC/C,MAAO,CACL,GAAGM,CAAY,YACfD,IAAcF,EAAuB,kCAAoC,SAASE,EAAU,eAAe,CAAC,SAC5G,GAAGE,EAAY,CAAC,WAAW,EAAI,CAAC,CAClC,EAAE,KAAK,IAAI,CACb",
   "names": ["sequence", "field", "parseBubbleLine", "line", "cols", "sameBubble", "a", "b", "bubbleKey", "bubbleLabel", "bubble", "min", "max", "SATURATED_PATH_COUNT", "bubbleDescription", "pathCount", "segmentCount", "inversion"]

package/dist/chunks/chunk-SYKOZDP6.js

@@ -0,0 +1,2 @@
+import{l as o}from"./chunk-3HS6N7WB.js";function u(a,r,e){return e?{...a,walkRowRuns:o(a,r)}:a}export{u as a};
+//# sourceMappingURL=chunk-SYKOZDP6.js.map

package/dist/chunks/{chunk-YMK7HFJV.js → chunk-WANYNRGU.js}

@@ -1,4 +1,4 @@
-import{s as Ve}from"./chunk-M2D7NUOY.js";import{b as ze}from"./chunk-JTOW3TOE.js";import{a as He}from"./chunk-OMF5XFKR.js";import{a as $e,c as Ye}from"./chunk-J5RMHLFJ.js";function qe(e){let r=[],t=0,o;for(let n=0,i=e.length;n<i;n++){let a=e.charCodeAt(n);if(a>=48&&a<=57)t=t*10+a-48;else if(a===58)o=t,t=0;else{let f=e[n];f==="M"||f==="="||f==="X"?r.push({own:o===void 0?t:o,mate:t,op:"M"}):f==="I"?r.push({own:0,mate:t,op:f}):(f==="D"||f==="N")&&r.push({own:t,mate:0,op:f}),o=void 0,t=0}}return r}function Ae(e){let r="";for(let{own:t,mate:o,op:n}of qe(e))r+=n==="M"?t===0?`${o}I`:o===0?`${t}D`:`${t}M`:`${n==="I"?o:t}${n}`;return r}var Se=2**28-1;function ve(e,r,t){for(let o=r;o>0;o-=Se)e.push((Math.min(o,Se)<<4|t)>>>0)}function kr(e,r,t){if(r===t)ve(e,r,0);else{let o=Math.ceil(Math.max(r,t)/Se);for(let n=0;n<o;n++){let i=Math.floor(r*(n+1)/o)-Math.floor(r*n/o),a=Math.floor(t*(n+1)/o)-Math.floor(t*n/o);e.push((i<<4|9)>>>0,(a<<4|9)>>>0)}}}function _e(e){let r=[];for(let{own:t,mate:o,op:n}of qe(e))n==="M"?kr(r,t,o):n==="I"?ve(r,o,1):ve(r,t,n==="N"?3:2);return Uint32Array.from(r)}function Gr(e){return e>=48&&e<=57}function Dr(e){return e!==void 0&&/[A-Za-z]/.test(e)}function Ke(e,r){let t=r;for(;t<e.length&&Dr(e[t]);)t++;return t}function Qe(e,r){let t=r,o=0;for(;t<e.length&&Gr(e.charCodeAt(t));)o=o*10+(e.charCodeAt(t)-48),t++;return{value:o,next:t}}function rr(e,r){let t=0;for(;t<e.length;){let o=e[t];if(o===":"){let{value:n,next:i}=Qe(e,t+1);r(":",n,n,t+1,i),t=i}else if(o==="="){let n=Ke(e,t+1),i=n-t-1;r("=",i,i,t+1,n),t=n}else if(o==="*")r("*",1,1,t+1,Math.min(t+3,e.length)),t+=3;else if(o==="+"||o==="-"){let n=Ke(e,t+1),i=n-t-1;r(o,o==="-"?i:0,o==="+"?i:0,t+1,n),t=n}else if(o==="~"){let{value:n,next:i}=Qe(e,t+3),a=Math.min(i+2,e.length);r("~",n,0,t+1,a),t=a}else t++}}function Ce(e,r,t,o){let n=t??Number.NEGATIVE_INFINITY,i=o??Number.POSITIVE_INFINITY,a=0;rr(e,(f,p,s,c,u)=>{if(f==="*")a>=n&&a<i&&r(88,a,1,e[c+1]??"",-1,0,0);else if(f==="+"){if(a>=n&&a<=i){let m=e.slice(c,u);r(73,a,s,m,-1,0,s)}}else(f==="-"||f==="~")&&a<i&&a+p>n&&r(f==="-"?68:78,a,p,"",-1,0,0);a+=p})}function tr(e,r,t,o){let n=0,i=0,a=[],f=t&&r;for(let p=0,s=e.length;p<s;p++){let c=e[p],u=c>>>4,m=c&15;if(m===0||m===7){if(f)for(let l=0;l<u;l++)(r.charCodeAt(i+l)|32)!==(t.charCodeAt(n+l)|32)&&a.push({start:n+l,type:"mismatch",base:r[i+l],altbase:t[n+l],length:1});i+=u,n+=u}else if(m===1)a.push({start:n,type:"insertion",insertlen:u,insertedBases:r?.slice(i,i+u),length:0}),i+=u;else if(m===2)a.push({start:n,type:"deletion",length:u}),n+=u;else if(m===3)a.push({start:n,type:"skip",length:u}),n+=u;else if(m===8){for(let l=0;l<u;l++)a.push({start:n+l,type:"mismatch",base:r?.[i+l]||"X",qual:o?.[i+l],length:1});i+=u,n+=u}else m===5?a.push({start:n,type:"hardclip",cliplen:u,length:1}):m===4&&(a.push({start:n,type:"softclip",cliplen:u,length:1}),i+=u)}return a}function or(e,r,t,o,n){if(!r)return[];let i=[],a=r.length,f=o.length,p=n!==void 0,s=t.length,c=!1;for(let b=0;b<s;b++)if(t[b].type==="skip"){c=!0;break}let u=0,m=0,l=0,y=0,d=0,x=0,g=e.length;for(;x<g;){let b=e.charCodeAt(x);if(b>=48&&b<=57){let v=0;for(;x<g;){let S=e.charCodeAt(x);if(S>=48&&S<=57)v=v*10+(S-48),x++;else break}u+=v}else if(b===94)for(x++;x<g&&e.charCodeAt(x)>=65;)x++,u++;else if(b>=65){let v=e[x];if(x++,c&&s>0)for(let I=d;I<s;I++){let R=t[I];R.type==="skip"&&u>=R.start&&(u+=R.length,d=I+1)}let S=l,C=y;for(let I=m;I<a&&C<=u;I++,m=I){let R=r[I],L=R>>>4,A=R&15;A===4||A===1?S+=L:A===2||A===6||A===3?C+=L:A!==5&&(S+=L,C+=L)}l=S,y=C;let F=S-(C-u),q=F<f?o[F]:"X";i.push({start:u,base:q,qual:p?n[F]:void 0,altbase:v,length:1,type:"mismatch"}),u++}else x++}return i}var nr={77:0,73:1,68:2,78:3,83:4,72:5,80:6,61:7,88:8};function ir(e=""){let r=0,t=[];for(let o=0,n=e.length;o<n;o++){let i=e.charCodeAt(o);if(i>=48&&i<=57)r=r*10+(i-48);else{let a=nr[i];t.push(r<<4|a),r=0}}return t}function Te(e=""){let r=0;for(let i=0,a=e.length;i<a;i++){let f=e.charCodeAt(i);(f<48||f>57)&&r++}let t=new Uint32Array(r),o=0,n=0;for(let i=0,a=e.length;i<a;i++){let f=e.charCodeAt(i);f>=48&&f<=57?o=o*10+(f-48):(t[n++]=o<<4|nr[f],o=0)}return t}function J(e,r,t,o,n){let i=ir(e),a=e?tr(i,t,o,n):[];return r&&t?a.concat(or(r,i,a,t,n)):a}var N=class extends $e{get(r){return r==="mismatches"?J(this.walkableCigar):r==="clipLengthAtStartOfRead"?this.clipLengthAtStartOfRead:r==="name"?super.get("name")??this.mate?.refName:super.get(r)}get mate(){return super.get("mate")}get walkableCigar(){let r=super.get("CIGAR"),t=super.get("coarseCigar");return typeof r=="string"?r:typeof t=="string"?Ae(t):void 0}get clipLengthAtStartOfRead(){return this.mate?.start??0}forEachMismatch(r,t){let o=this.get("start"),n=t?.start===void 0?void 0:t.start-o,i=t?.end===void 0?void 0:t.end-o,a=this.get("cs");if(a)Ce(a,r,n,i);else{let f=n??Number.NEGATIVE_INFINITY,p=i??Number.POSITIVE_INFINITY;for(let s of J(this.walkableCigar))(s.type==="deletion"||s.type==="skip"?s.start<p&&s.start+s.length>f:s.start>=f&&s.start<=p)&&(s.type==="mismatch"?r(88,s.start,s.length,s.base,s.qual??-1,0,0):s.type==="insertion"?r(73,s.start,s.length,s.insertedBases??"",-1,0,s.insertlen):s.type==="deletion"?r(68,s.start,s.length,"",-1,0,0):s.type==="skip"&&r(78,s.start,s.length,"",-1,0,0))}}};var we=function(e,r){return we=Object.setPrototypeOf||{__proto__:[]}instanceof Array&&function(t,o){t.__proto__=o}||function(t,o){for(var n in o)Object.prototype.hasOwnProperty.call(o,n)&&(t[n]=o[n])},we(e,r)};function H(e,r){if(typeof r!="function"&&r!==null)throw new TypeError("Class extends value "+String(r)+" is not a constructor or null");we(e,r);function t(){this.constructor=e}e.prototype=r===null?Object.create(r):(t.prototype=r.prototype,new t)}function ar(e,r,t,o){function n(i){return i instanceof t?i:new t(function(a){a(i)})}return new(t||(t=Promise))(function(i,a){function f(c){try{s(o.next(c))}catch(u){a(u)}}function p(c){try{s(o.throw(c))}catch(u){a(u)}}function s(c){c.done?i(c.value):n(c.value).then(f,p)}s((o=o.apply(e,r||[])).next())})}function ee(e,r){var t={label:0,sent:function(){if(i[0]&1)throw i[1];return i[1]},trys:[],ops:[]},o,n,i,a=Object.create((typeof Iterator=="function"?Iterator:Object).prototype);return a.next=f(0),a.throw=f(1),a.return=f(2),typeof Symbol=="function"&&(a[Symbol.iterator]=function(){return this}),a;function f(s){return function(c){return p([s,c])}}function p(s){if(o)throw new TypeError("Generator is already executing.");for(;a&&(a=0,s[0]&&(t=0)),t;)try{if(o=1,n&&(i=s[0]&2?n.return:s[0]?n.throw||((i=n.return)&&i.call(n),0):n.next)&&!(i=i.call(n,s[1])).done)return i;switch(n=0,i&&(s=[s[0]&2,i.value]),s[0]){case 0:case 1:i=s;break;case 4:return t.label++,{value:s[1],done:!1};case 5:t.label++,n=s[1],s=[0];continue;case 7:s=t.ops.pop(),t.trys.pop();continue;default:if(i=t.trys,!(i=i.length>0&&i[i.length-1])&&(s[0]===6||s[0]===2)){t=0;continue}if(s[0]===3&&(!i||s[1]>i[0]&&s[1]<i[3])){t.label=s[1];break}if(s[0]===6&&t.label<i[1]){t.label=i[1],i=s;break}if(i&&t.label<i[2]){t.label=i[2],t.ops.push(s);break}i[2]&&t.ops.pop(),t.trys.pop();continue}s=r.call(e,t)}catch(c){s=[6,c],n=0}finally{o=i=0}if(s[0]&5)throw s[1];return{value:s[0]?s[1]:void 0,done:!0}}}function P(e){var r=typeof Symbol=="function"&&Symbol.iterator,t=r&&e[r],o=0;if(t)return t.call(e);if(e&&typeof e.length=="number")return{next:function(){return e&&o>=e.length&&(e=void 0),{value:e&&e[o++],done:!e}}};throw new TypeError(r?"Object is not iterable.":"Symbol.iterator is not defined.")}function D(e,r){var t=typeof Symbol=="function"&&e[Symbol.iterator];if(!t)return e;var o=t.call(e),n,i=[],a;try{for(;(r===void 0||r-- >0)&&!(n=o.next()).done;)i.push(n.value)}catch(f){a={error:f}}finally{try{n&&!n.done&&(t=o.return)&&t.call(o)}finally{if(a)throw a.error}}return i}function j(e,r,t){if(t||arguments.length===2)for(var o=0,n=r.length,i;o<n;o++)(i||!(o in r))&&(i||(i=Array.prototype.slice.call(r,0,o)),i[o]=r[o]);return e.concat(i||Array.prototype.slice.call(r))}function k(e){return this instanceof k?(this.v=e,this):new k(e)}function sr(e,r,t){if(!Symbol.asyncIterator)throw new TypeError("Symbol.asyncIterator is not defined.");var o=t.apply(e,r||[]),n,i=[];return n=Object.create((typeof AsyncIterator=="function"?AsyncIterator:Object).prototype),f("next"),f("throw"),f("return",a),n[Symbol.asyncIterator]=function(){return this},n;function a(l){return function(y){return Promise.resolve(y).then(l,u)}}function f(l,y){o[l]&&(n[l]=function(d){return new Promise(function(x,g){i.push([l,d,x,g])>1||p(l,d)})},y&&(n[l]=y(n[l])))}function p(l,y){try{s(o[l](y))}catch(d){m(i[0][3],d)}}function s(l){l.value instanceof k?Promise.resolve(l.value.v).then(c,u):m(i[0][2],l)}function c(l){p("next",l)}function u(l){p("throw",l)}function m(l,y){l(y),i.shift(),i.length&&p(i[0][0],i[0][1])}}function fr(e){if(!Symbol.asyncIterator)throw new TypeError("Symbol.asyncIterator is not defined.");var r=e[Symbol.asyncIterator],t;return r?r.call(e):(e=typeof P=="function"?P(e):e[Symbol.iterator](),t={},o("next"),o("throw"),o("return"),t[Symbol.asyncIterator]=function(){return this},t);function o(i){t[i]=e[i]&&function(a){return new Promise(function(f,p){a=e[i](a),n(f,p,a.done,a.value)})}}function n(i,a,f,p){Promise.resolve(p).then(function(s){i({value:s,done:f})},a)}}function h(e){return typeof e=="function"}function pr(e){var r=function(o){Error.call(o),o.stack=new Error().stack},t=e(r);return t.prototype=Object.create(Error.prototype),t.prototype.constructor=t,t}var re=pr(function(e){return function(t){e(this),this.message=t?t.length+` errors occurred during unsubscription:
+import{s as Ve}from"./chunk-M2D7NUOY.js";import{b as ze}from"./chunk-EENENDGZ.js";import{a as He}from"./chunk-L372SDUG.js";import{a as $e,c as Ye}from"./chunk-J5RMHLFJ.js";function qe(e){let r=[],t=0,o;for(let n=0,i=e.length;n<i;n++){let a=e.charCodeAt(n);if(a>=48&&a<=57)t=t*10+a-48;else if(a===58)o=t,t=0;else{let f=e[n];f==="M"||f==="="||f==="X"?r.push({own:o===void 0?t:o,mate:t,op:"M"}):f==="I"?r.push({own:0,mate:t,op:f}):(f==="D"||f==="N")&&r.push({own:t,mate:0,op:f}),o=void 0,t=0}}return r}function Ae(e){let r="";for(let{own:t,mate:o,op:n}of qe(e))r+=n==="M"?t===0?`${o}I`:o===0?`${t}D`:`${t}M`:`${n==="I"?o:t}${n}`;return r}var Se=2**28-1;function ve(e,r,t){for(let o=r;o>0;o-=Se)e.push((Math.min(o,Se)<<4|t)>>>0)}function kr(e,r,t){if(r===t)ve(e,r,0);else{let o=Math.ceil(Math.max(r,t)/Se);for(let n=0;n<o;n++){let i=Math.floor(r*(n+1)/o)-Math.floor(r*n/o),a=Math.floor(t*(n+1)/o)-Math.floor(t*n/o);e.push((i<<4|9)>>>0,(a<<4|9)>>>0)}}}function _e(e){let r=[];for(let{own:t,mate:o,op:n}of qe(e))n==="M"?kr(r,t,o):n==="I"?ve(r,o,1):ve(r,t,n==="N"?3:2);return Uint32Array.from(r)}function Gr(e){return e>=48&&e<=57}function Dr(e){return e!==void 0&&/[A-Za-z]/.test(e)}function Ke(e,r){let t=r;for(;t<e.length&&Dr(e[t]);)t++;return t}function Qe(e,r){let t=r,o=0;for(;t<e.length&&Gr(e.charCodeAt(t));)o=o*10+(e.charCodeAt(t)-48),t++;return{value:o,next:t}}function rr(e,r){let t=0;for(;t<e.length;){let o=e[t];if(o===":"){let{value:n,next:i}=Qe(e,t+1);r(":",n,n,t+1,i),t=i}else if(o==="="){let n=Ke(e,t+1),i=n-t-1;r("=",i,i,t+1,n),t=n}else if(o==="*")r("*",1,1,t+1,Math.min(t+3,e.length)),t+=3;else if(o==="+"||o==="-"){let n=Ke(e,t+1),i=n-t-1;r(o,o==="-"?i:0,o==="+"?i:0,t+1,n),t=n}else if(o==="~"){let{value:n,next:i}=Qe(e,t+3),a=Math.min(i+2,e.length);r("~",n,0,t+1,a),t=a}else t++}}function Ce(e,r,t,o){let n=t??Number.NEGATIVE_INFINITY,i=o??Number.POSITIVE_INFINITY,a=0;rr(e,(f,p,s,c,u)=>{if(f==="*")a>=n&&a<i&&r(88,a,1,e[c+1]??"",-1,0,0);else if(f==="+"){if(a>=n&&a<=i){let m=e.slice(c,u);r(73,a,s,m,-1,0,s)}}else(f==="-"||f==="~")&&a<i&&a+p>n&&r(f==="-"?68:78,a,p,"",-1,0,0);a+=p})}function tr(e,r,t,o){let n=0,i=0,a=[],f=t&&r;for(let p=0,s=e.length;p<s;p++){let c=e[p],u=c>>>4,m=c&15;if(m===0||m===7){if(f)for(let l=0;l<u;l++)(r.charCodeAt(i+l)|32)!==(t.charCodeAt(n+l)|32)&&a.push({start:n+l,type:"mismatch",base:r[i+l],altbase:t[n+l],length:1});i+=u,n+=u}else if(m===1)a.push({start:n,type:"insertion",insertlen:u,insertedBases:r?.slice(i,i+u),length:0}),i+=u;else if(m===2)a.push({start:n,type:"deletion",length:u}),n+=u;else if(m===3)a.push({start:n,type:"skip",length:u}),n+=u;else if(m===8){for(let l=0;l<u;l++)a.push({start:n+l,type:"mismatch",base:r?.[i+l]||"X",qual:o?.[i+l],length:1});i+=u,n+=u}else m===5?a.push({start:n,type:"hardclip",cliplen:u,length:1}):m===4&&(a.push({start:n,type:"softclip",cliplen:u,length:1}),i+=u)}return a}function or(e,r,t,o,n){if(!r)return[];let i=[],a=r.length,f=o.length,p=n!==void 0,s=t.length,c=!1;for(let b=0;b<s;b++)if(t[b].type==="skip"){c=!0;break}let u=0,m=0,l=0,y=0,d=0,x=0,g=e.length;for(;x<g;){let b=e.charCodeAt(x);if(b>=48&&b<=57){let v=0;for(;x<g;){let S=e.charCodeAt(x);if(S>=48&&S<=57)v=v*10+(S-48),x++;else break}u+=v}else if(b===94)for(x++;x<g&&e.charCodeAt(x)>=65;)x++,u++;else if(b>=65){let v=e[x];if(x++,c&&s>0)for(let I=d;I<s;I++){let R=t[I];R.type==="skip"&&u>=R.start&&(u+=R.length,d=I+1)}let S=l,C=y;for(let I=m;I<a&&C<=u;I++,m=I){let R=r[I],L=R>>>4,A=R&15;A===4||A===1?S+=L:A===2||A===6||A===3?C+=L:A!==5&&(S+=L,C+=L)}l=S,y=C;let F=S-(C-u),q=F<f?o[F]:"X";i.push({start:u,base:q,qual:p?n[F]:void 0,altbase:v,length:1,type:"mismatch"}),u++}else x++}return i}var nr={77:0,73:1,68:2,78:3,83:4,72:5,80:6,61:7,88:8};function ir(e=""){let r=0,t=[];for(let o=0,n=e.length;o<n;o++){let i=e.charCodeAt(o);if(i>=48&&i<=57)r=r*10+(i-48);else{let a=nr[i];t.push(r<<4|a),r=0}}return t}function Te(e=""){let r=0;for(let i=0,a=e.length;i<a;i++){let f=e.charCodeAt(i);(f<48||f>57)&&r++}let t=new Uint32Array(r),o=0,n=0;for(let i=0,a=e.length;i<a;i++){let f=e.charCodeAt(i);f>=48&&f<=57?o=o*10+(f-48):(t[n++]=o<<4|nr[f],o=0)}return t}function J(e,r,t,o,n){let i=ir(e),a=e?tr(i,t,o,n):[];return r&&t?a.concat(or(r,i,a,t,n)):a}var N=class extends $e{get(r){return r==="mismatches"?J(this.walkableCigar):r==="clipLengthAtStartOfRead"?this.clipLengthAtStartOfRead:r==="name"?super.get("name")??this.mate?.refName:super.get(r)}get mate(){return super.get("mate")}get walkableCigar(){let r=super.get("CIGAR"),t=super.get("coarseCigar");return typeof r=="string"?r:typeof t=="string"?Ae(t):void 0}get clipLengthAtStartOfRead(){return this.mate?.start??0}forEachMismatch(r,t){let o=this.get("start"),n=t?.start===void 0?void 0:t.start-o,i=t?.end===void 0?void 0:t.end-o,a=this.get("cs");if(a)Ce(a,r,n,i);else{let f=n??Number.NEGATIVE_INFINITY,p=i??Number.POSITIVE_INFINITY;for(let s of J(this.walkableCigar))(s.type==="deletion"||s.type==="skip"?s.start<p&&s.start+s.length>f:s.start>=f&&s.start<=p)&&(s.type==="mismatch"?r(88,s.start,s.length,s.base,s.qual??-1,0,0):s.type==="insertion"?r(73,s.start,s.length,s.insertedBases??"",-1,0,s.insertlen):s.type==="deletion"?r(68,s.start,s.length,"",-1,0,0):s.type==="skip"&&r(78,s.start,s.length,"",-1,0,0))}}};var we=function(e,r){return we=Object.setPrototypeOf||{__proto__:[]}instanceof Array&&function(t,o){t.__proto__=o}||function(t,o){for(var n in o)Object.prototype.hasOwnProperty.call(o,n)&&(t[n]=o[n])},we(e,r)};function H(e,r){if(typeof r!="function"&&r!==null)throw new TypeError("Class extends value "+String(r)+" is not a constructor or null");we(e,r);function t(){this.constructor=e}e.prototype=r===null?Object.create(r):(t.prototype=r.prototype,new t)}function ar(e,r,t,o){function n(i){return i instanceof t?i:new t(function(a){a(i)})}return new(t||(t=Promise))(function(i,a){function f(c){try{s(o.next(c))}catch(u){a(u)}}function p(c){try{s(o.throw(c))}catch(u){a(u)}}function s(c){c.done?i(c.value):n(c.value).then(f,p)}s((o=o.apply(e,r||[])).next())})}function ee(e,r){var t={label:0,sent:function(){if(i[0]&1)throw i[1];return i[1]},trys:[],ops:[]},o,n,i,a=Object.create((typeof Iterator=="function"?Iterator:Object).prototype);return a.next=f(0),a.throw=f(1),a.return=f(2),typeof Symbol=="function"&&(a[Symbol.iterator]=function(){return this}),a;function f(s){return function(c){return p([s,c])}}function p(s){if(o)throw new TypeError("Generator is already executing.");for(;a&&(a=0,s[0]&&(t=0)),t;)try{if(o=1,n&&(i=s[0]&2?n.return:s[0]?n.throw||((i=n.return)&&i.call(n),0):n.next)&&!(i=i.call(n,s[1])).done)return i;switch(n=0,i&&(s=[s[0]&2,i.value]),s[0]){case 0:case 1:i=s;break;case 4:return t.label++,{value:s[1],done:!1};case 5:t.label++,n=s[1],s=[0];continue;case 7:s=t.ops.pop(),t.trys.pop();continue;default:if(i=t.trys,!(i=i.length>0&&i[i.length-1])&&(s[0]===6||s[0]===2)){t=0;continue}if(s[0]===3&&(!i||s[1]>i[0]&&s[1]<i[3])){t.label=s[1];break}if(s[0]===6&&t.label<i[1]){t.label=i[1],i=s;break}if(i&&t.label<i[2]){t.label=i[2],t.ops.push(s);break}i[2]&&t.ops.pop(),t.trys.pop();continue}s=r.call(e,t)}catch(c){s=[6,c],n=0}finally{o=i=0}if(s[0]&5)throw s[1];return{value:s[0]?s[1]:void 0,done:!0}}}function P(e){var r=typeof Symbol=="function"&&Symbol.iterator,t=r&&e[r],o=0;if(t)return t.call(e);if(e&&typeof e.length=="number")return{next:function(){return e&&o>=e.length&&(e=void 0),{value:e&&e[o++],done:!e}}};throw new TypeError(r?"Object is not iterable.":"Symbol.iterator is not defined.")}function D(e,r){var t=typeof Symbol=="function"&&e[Symbol.iterator];if(!t)return e;var o=t.call(e),n,i=[],a;try{for(;(r===void 0||r-- >0)&&!(n=o.next()).done;)i.push(n.value)}catch(f){a={error:f}}finally{try{n&&!n.done&&(t=o.return)&&t.call(o)}finally{if(a)throw a.error}}return i}function j(e,r,t){if(t||arguments.length===2)for(var o=0,n=r.length,i;o<n;o++)(i||!(o in r))&&(i||(i=Array.prototype.slice.call(r,0,o)),i[o]=r[o]);return e.concat(i||Array.prototype.slice.call(r))}function k(e){return this instanceof k?(this.v=e,this):new k(e)}function sr(e,r,t){if(!Symbol.asyncIterator)throw new TypeError("Symbol.asyncIterator is not defined.");var o=t.apply(e,r||[]),n,i=[];return n=Object.create((typeof AsyncIterator=="function"?AsyncIterator:Object).prototype),f("next"),f("throw"),f("return",a),n[Symbol.asyncIterator]=function(){return this},n;function a(l){return function(y){return Promise.resolve(y).then(l,u)}}function f(l,y){o[l]&&(n[l]=function(d){return new Promise(function(x,g){i.push([l,d,x,g])>1||p(l,d)})},y&&(n[l]=y(n[l])))}function p(l,y){try{s(o[l](y))}catch(d){m(i[0][3],d)}}function s(l){l.value instanceof k?Promise.resolve(l.value.v).then(c,u):m(i[0][2],l)}function c(l){p("next",l)}function u(l){p("throw",l)}function m(l,y){l(y),i.shift(),i.length&&p(i[0][0],i[0][1])}}function fr(e){if(!Symbol.asyncIterator)throw new TypeError("Symbol.asyncIterator is not defined.");var r=e[Symbol.asyncIterator],t;return r?r.call(e):(e=typeof P=="function"?P(e):e[Symbol.iterator](),t={},o("next"),o("throw"),o("return"),t[Symbol.asyncIterator]=function(){return this},t);function o(i){t[i]=e[i]&&function(a){return new Promise(function(f,p){a=e[i](a),n(f,p,a.done,a.value)})}}function n(i,a,f,p){Promise.resolve(p).then(function(s){i({value:s,done:f})},a)}}function h(e){return typeof e=="function"}function pr(e){var r=function(o){Error.call(o),o.stack=new Error().stack},t=e(r);return t.prototype=Object.create(Error.prototype),t.prototype.constructor=t,t}var re=pr(function(e){return function(t){e(this),this.message=t?t.length+` errors occurred during unsubscription:
 `+t.map(function(o,n){return n+1+") "+o.toString()}).join(`
   `):"",this.name="UnsubscriptionError",this.errors=t}});function Oe(e,r){if(e){var t=e.indexOf(r);0<=t&&e.splice(t,1)}}var te=(function(){function e(r){this.initialTeardown=r,this.closed=!1,this._parentage=null,this._finalizers=null}return e.prototype.unsubscribe=function(){var r,t,o,n,i;if(!this.closed){this.closed=!0;var a=this._parentage;if(a)if(this._parentage=null,Array.isArray(a))try{for(var f=P(a),p=f.next();!p.done;p=f.next()){var s=p.value;s.remove(this)}}catch(d){r={error:d}}finally{try{p&&!p.done&&(t=f.return)&&t.call(f)}finally{if(r)throw r.error}}else a.remove(this);var c=this.initialTeardown;if(h(c))try{c()}catch(d){i=d instanceof re?d.errors:[d]}var u=this._finalizers;if(u){this._finalizers=null;try{for(var m=P(u),l=m.next();!l.done;l=m.next()){var y=l.value;try{cr(y)}catch(d){i=i??[],d instanceof re?i=j(j([],D(i)),D(d.errors)):i.push(d)}}}catch(d){o={error:d}}finally{try{l&&!l.done&&(n=m.return)&&n.call(m)}finally{if(o)throw o.error}}}if(i)throw new re(i)}},e.prototype.add=function(r){var t;if(r&&r!==this)if(this.closed)cr(r);else{if(r instanceof e){if(r.closed||r._hasParent(this))return;r._addParent(this)}(this._finalizers=(t=this._finalizers)!==null&&t!==void 0?t:[]).push(r)}},e.prototype._hasParent=function(r){var t=this._parentage;return t===r||Array.isArray(t)&&t.includes(r)},e.prototype._addParent=function(r){var t=this._parentage;this._parentage=Array.isArray(t)?(t.push(r),t):t?[t,r]:r},e.prototype._removeParent=function(r){var t=this._parentage;t===r?this._parentage=null:Array.isArray(t)&&Oe(t,r)},e.prototype.remove=function(r){var t=this._finalizers;t&&Oe(t,r),r instanceof e&&r._removeParent(this)},e.EMPTY=(function(){var r=new e;return r.closed=!0,r})(),e})();var Zt=te.EMPTY;function oe(e){return e instanceof te||e&&"closed"in e&&h(e.remove)&&h(e.add)&&h(e.unsubscribe)}function cr(e){h(e)?e():e.unsubscribe()}var w={onUnhandledError:null,onStoppedNotification:null,Promise:void 0,useDeprecatedSynchronousErrorHandling:!1,useDeprecatedNextContext:!1};var U={setTimeout:function(e,r){for(var t=[],o=2;o<arguments.length;o++)t[o-2]=arguments[o];var n=U.delegate;return n?.setTimeout?n.setTimeout.apply(n,j([e,r],D(t))):setTimeout.apply(void 0,j([e,r],D(t)))},clearTimeout:function(e){var r=U.delegate;return(r?.clearTimeout||clearTimeout)(e)},delegate:void 0};function ne(e){U.setTimeout(function(){var r=w.onUnhandledError;if(r)r(e);else throw e})}function Re(){}var ur=(function(){return Me("C",void 0,void 0)})();function lr(e){return Me("E",void 0,e)}function mr(e){return Me("N",e,void 0)}function Me(e,r,t){return{kind:e,value:r,error:t}}var G=null;function dr(e){if(w.useDeprecatedSynchronousErrorHandling){var r=!G;if(r&&(G={errorThrown:!1,error:null}),e(),r){var t=G,o=t.errorThrown,n=t.error;if(G=null,o)throw n}}else e()}function xr(e){w.useDeprecatedSynchronousErrorHandling&&G&&(G.errorThrown=!0,G.error=e)}var z=(function(e){H(r,e);function r(t){var o=e.call(this)||this;return o.isStopped=!1,t?(o.destination=t,oe(t)&&t.add(o)):o.destination=Yr,o}return r.create=function(t,o,n){return new ae(t,o,n)},r.prototype.next=function(t){this.isStopped?Le(mr(t),this):this._next(t)},r.prototype.error=function(t){this.isStopped?Le(lr(t),this):(this.isStopped=!0,this._error(t))},r.prototype.complete=function(){this.isStopped?Le(ur,this):(this.isStopped=!0,this._complete())},r.prototype.unsubscribe=function(){this.closed||(this.isStopped=!0,e.prototype.unsubscribe.call(this),this.destination=null)},r.prototype._next=function(t){this.destination.next(t)},r.prototype._error=function(t){try{this.destination.error(t)}finally{this.unsubscribe()}},r.prototype._complete=function(){try{this.destination.complete()}finally{this.unsubscribe()}},r})(te);var Br=Function.prototype.bind;function Fe(e,r){return Br.call(e,r)}var Wr=(function(){function e(r){this.partialObserver=r}return e.prototype.next=function(r){var t=this.partialObserver;if(t.next)try{t.next(r)}catch(o){ie(o)}},e.prototype.error=function(r){var t=this.partialObserver;if(t.error)try{t.error(r)}catch(o){ie(o)}else ie(r)},e.prototype.complete=function(){var r=this.partialObserver;if(r.complete)try{r.complete()}catch(t){ie(t)}},e})(),ae=(function(e){H(r,e);function r(t,o,n){var i=e.call(this)||this,a;if(h(t)||!t)a={next:t??void 0,error:o??void 0,complete:n??void 0};else{var f;i&&w.useDeprecatedNextContext?(f=Object.create(t),f.unsubscribe=function(){return i.unsubscribe()},a={next:t.next&&Fe(t.next,f),error:t.error&&Fe(t.error,f),complete:t.complete&&Fe(t.complete,f)}):a=t}return i.destination=new Wr(a),i}return r})(z);function ie(e){w.useDeprecatedSynchronousErrorHandling?xr(e):ne(e)}function $r(e){throw e}function Le(e,r){var t=w.onStoppedNotification;t&&U.setTimeout(function(){return t(e,r)})}var Yr={closed:!0,next:Re,error:$r,complete:Re};var B=(function(){return typeof Symbol=="function"&&Symbol.observable||"@@observable"})();function hr(e){return e}function yr(e){return e.length===0?hr:e.length===1?e[0]:function(t){return e.reduce(function(o,n){return n(o)},t)}}var _=(function(){function e(r){r&&(this._subscribe=r)}return e.prototype.lift=function(r){var t=new e;return t.source=this,t.operator=r,t},e.prototype.subscribe=function(r,t,o){var n=this,i=zr(r)?r:new ae(r,t,o);return dr(function(){var a=n,f=a.operator,p=a.source;i.add(f?f.call(i,p):p?n._subscribe(i):n._trySubscribe(i))}),i},e.prototype._trySubscribe=function(r){try{return this._subscribe(r)}catch(t){r.error(t)}},e.prototype.forEach=function(r,t){var o=this;return t=gr(t),new t(function(n,i){var a=new ae({next:function(f){try{r(f)}catch(p){i(p),a.unsubscribe()}},error:i,complete:n});o.subscribe(a)})},e.prototype._subscribe=function(r){var t;return(t=this.source)===null||t===void 0?void 0:t.subscribe(r)},e.prototype[B]=function(){return this},e.prototype.pipe=function(){for(var r=[],t=0;t<arguments.length;t++)r[t]=arguments[t];return yr(r)(this)},e.prototype.toPromise=function(r){var t=this;return r=gr(r),new r(function(o,n){var i;t.subscribe(function(a){return i=a},function(a){return n(a)},function(){return o(i)})})},e.create=function(r){return new e(r)},e})();function gr(e){var r;return(r=e??w.Promise)!==null&&r!==void 0?r:Promise}function Hr(e){return e&&h(e.next)&&h(e.error)&&h(e.complete)}function zr(e){return e&&e instanceof z||Hr(e)&&oe(e)}function Vr(e){return h(e?.lift)}function E(e){return function(r){if(Vr(r))return r.lift(function(t){try{return e(t,this)}catch(o){this.error(o)}});throw new TypeError("Unable to lift unknown Observable type")}}function M(e,r,t,o,n){return new qr(e,r,t,o,n)}var qr=(function(e){H(r,e);function r(t,o,n,i,a,f){var p=e.call(this,t)||this;return p.onFinalize=a,p.shouldUnsubscribe=f,p._next=o?function(s){try{o(s)}catch(c){t.error(c)}}:e.prototype._next,p._error=i?function(s){try{i(s)}catch(c){t.error(c)}finally{this.unsubscribe()}}:e.prototype._error,p._complete=n?function(){try{n()}catch(s){t.error(s)}finally{this.unsubscribe()}}:e.prototype._complete,p}return r.prototype.unsubscribe=function(){var t;if(!this.shouldUnsubscribe||this.shouldUnsubscribe()){var o=this.closed;e.prototype.unsubscribe.call(this),!o&&((t=this.onFinalize)===null||t===void 0||t.call(this))}},r})(z);var se=(function(e){return e&&typeof e.length=="number"&&typeof e!="function"});function fe(e){return h(e?.then)}function pe(e){return h(e[B])}function ce(e){return Symbol.asyncIterator&&h(e?.[Symbol.asyncIterator])}function ue(e){return new TypeError("You provided "+(e!==null&&typeof e=="object"?"an invalid object":"'"+e+"'")+" where a stream was expected. You can provide an Observable, Promise, ReadableStream, Array, AsyncIterable, or Iterable.")}function Kr(){return typeof Symbol!="function"||!Symbol.iterator?"@@iterator":Symbol.iterator}var le=Kr();function me(e){return h(e?.[le])}function de(e){return sr(this,arguments,function(){var t,o,n,i;return ee(this,function(a){switch(a.label){case 0:t=e.getReader(),a.label=1;case 1:a.trys.push([1,,9,10]),a.label=2;case 2:return[4,k(t.read())];case 3:return o=a.sent(),n=o.value,i=o.done,i?[4,k(void 0)]:[3,5];case 4:return[2,a.sent()];case 5:return[4,k(n)];case 6:return[4,a.sent()];case 7:return a.sent(),[3,2];case 8:return[3,10];case 9:return t.releaseLock(),[7];case 10:return[2]}})})}function xe(e){return h(e?.getReader)}function O(e){if(e instanceof _)return e;if(e!=null){if(pe(e))return Qr(e);if(se(e))return Xr(e);if(fe(e))return Zr(e);if(ce(e))return br(e);if(me(e))return Jr(e);if(xe(e))return et(e)}throw ue(e)}function Qr(e){return new _(function(r){var t=e[B]();if(h(t.subscribe))return t.subscribe(r);throw new TypeError("Provided object does not correctly implement Symbol.observable")})}function Xr(e){return new _(function(r){for(var t=0;t<e.length&&!r.closed;t++)r.next(e[t]);r.complete()})}function Zr(e){return new _(function(r){e.then(function(t){r.closed||(r.next(t),r.complete())},function(t){return r.error(t)}).then(null,ne)})}function Jr(e){return new _(function(r){var t,o;try{for(var n=P(e),i=n.next();!i.done;i=n.next()){var a=i.value;if(r.next(a),r.closed)return}}catch(f){t={error:f}}finally{try{i&&!i.done&&(o=n.return)&&o.call(n)}finally{if(t)throw t.error}}r.complete()})}function br(e){return new _(function(r){rt(e,r).catch(function(t){return r.error(t)})})}function et(e){return br(de(e))}function rt(e,r){var t,o,n,i;return ar(this,void 0,void 0,function(){var a,f;return ee(this,function(p){switch(p.label){case 0:p.trys.push([0,5,6,11]),t=fr(e),p.label=1;case 1:return[4,t.next()];case 2:if(o=p.sent(),!!o.done)return[3,4];if(a=o.value,r.next(a),r.closed)return[2];p.label=3;case 3:return[3,1];case 4:return[3,11];case 5:return f=p.sent(),n={error:f},[3,11];case 6:return p.trys.push([6,,9,10]),o&&!o.done&&(i=t.return)?[4,i.call(t)]:[3,8];case 7:p.sent(),p.label=8;case 8:return[3,10];case 9:if(n)throw n.error;return[7];case 10:return[7];case 11:return r.complete(),[2]}})})}function T(e,r,t,o,n){o===void 0&&(o=0),n===void 0&&(n=!1);var i=r.schedule(function(){t(),n?e.add(this.schedule(null,o)):this.unsubscribe()},o);if(e.add(i),!n)return i}function he(e,r){return r===void 0&&(r=0),E(function(t,o){t.subscribe(M(o,function(n){return T(o,e,function(){return o.next(n)},r)},function(){return T(o,e,function(){return o.complete()},r)},function(n){return T(o,e,function(){return o.error(n)},r)}))})}function ye(e,r){return r===void 0&&(r=0),E(function(t,o){o.add(e.schedule(function(){return t.subscribe(o)},r))})}function Sr(e,r){return O(e).pipe(ye(r),he(r))}function vr(e,r){return O(e).pipe(ye(r),he(r))}function Ar(e,r){return new _(function(t){var o=0;return r.schedule(function(){o===e.length?t.complete():(t.next(e[o++]),t.closed||this.schedule())})})}function _r(e,r){return new _(function(t){var o;return T(t,r,function(){o=e[le](),T(t,r,function(){var n,i,a;try{n=o.next(),i=n.value,a=n.done}catch(f){t.error(f);return}a?t.complete():t.next(i)},0,!0)}),function(){return h(o?.return)&&o.return()}})}function ge(e,r){if(!e)throw new Error("Iterable cannot be null");return new _(function(t){T(t,r,function(){var o=e[Symbol.asyncIterator]();T(t,r,function(){o.next().then(function(n){n.done?t.complete():t.next(n.value)})},0,!0)})})}function Cr(e,r){return ge(de(e),r)}function Ir(e,r){if(e!=null){if(pe(e))return Sr(e,r);if(se(e))return Ar(e,r);if(fe(e))return vr(e,r);if(ce(e))return ge(e,r);if(me(e))return _r(e,r);if(xe(e))return Cr(e,r)}throw ue(e)}function Ne(e,r){return r?Ir(e,r):O(e)}function V(e,r){return E(function(t,o){var n=0;t.subscribe(M(o,function(i){o.next(e.call(r,i,n++))}))})}function Er(e,r,t,o,n,i,a,f){var p=[],s=0,c=0,u=!1,m=function(){u&&!p.length&&!s&&r.complete()},l=function(d){return s<o?y(d):p.push(d)},y=function(d){i&&r.next(d),s++;var x=!1;O(t(d,c++)).subscribe(M(r,function(g){n?.(g),i?l(g):r.next(g)},function(){x=!0},void 0,function(){if(x)try{s--;for(var g=function(){var b=p.shift();a?T(r,a,function(){return y(b)}):y(b)};p.length&&s<o;)g();m()}catch(b){r.error(b)}}))};return e.subscribe(M(r,l,function(){u=!0,m()})),function(){f?.()}}function W(e,r,t){return t===void 0&&(t=1/0),h(r)?W(function(o,n){return V(function(i,a){return r(o,i,n,a)})(O(e(o,n)))},t):(typeof r=="number"&&(t=r),E(function(o,n){return Er(o,n,e,t)}))}function Tr(e,r,t,o,n){return function(i,a){var f=t,p=r,s=0;i.subscribe(M(a,function(c){var u=s++;p=f?e(p,c,u):(f=!0,c),o&&a.next(p)},n&&(function(){f&&a.next(p),a.complete()})))}}function wr(e,r){return E(Tr(e,r,arguments.length>=2,!1,!0))}var tt=function(e,r){return e.push(r),e};function be(){return E(function(e,r){wr(tt,[])(e).subscribe(r)})}var ot=397,nt=387,it=385;function Or(e){return(1<<e&ot)!==0}function Rr(e){return(1<<e&nt)!==0}function Mr(e){return(1<<e&it)!==0}function Pe(e,r,t,o,n,i,a){let f=n===-1?-1:1,p=r,s=n===-1?o:t,c=[],u=1/0,m=-1/0,l=1/0,y=-1/0,d=(x,g)=>{l=Math.min(l,x,g),y=Math.max(y,x,g)};for(let x=0;x<e.length;x++){let g=e[x],b=g>>>4,v=g&15,S=v===9,C=S||Or(v)?b:0,F=S?e[++x]>>>4:Rr(v)?b:0,q=p+C,I=s+F*f,R=p,L=q;if(L>=i&&R<=a)if(C>0){let A=Math.max(R,i),$=Math.min(L,a);if($>A)if(u=Math.min(u,A),m=Math.max(m,$),S){let je=F/b,Ue=$-A,Be=Math.round(Ue*je),We=Math.round(s+(A-p)*je*f);c.push(Ue<<4|9,Be<<4|9),d(We,We+Be*f)}else c.push($-A<<4|v),Mr(v)?d(s+(A-p)*f,s+($-p)*f):d(s,s)}else F>0&&(S?c.push(g,e[x]):c.push(g),u=Math.min(u,p),m=Math.max(m,p),d(s,I));if(p=q,s=I,p>a)break}if(c.length!==0)return{start:u,end:m,mateStart:l,mateEnd:y,cigar:Uint32Array.from(c)}}function at(e){return e===1||e===2||e===3}function ke(e,r,t,o,n,i){let a=n===-1?-1:1,f=[],p=r,s=n===-1?o:t,c,u=!1,m=()=>{c!==void 0&&u&&c.qHi>c.qLo&&f.push({start:c.qLo,end:c.qHi,mateStart:c.tLo,mateEnd:c.tHi,cigar:Uint32Array.from(c.ops)}),c=void 0,u=!1};for(let l=0;l<e.length;l++){let y=e[l],d=y>>>4,x=y&15,g=x===9,b=g?e[++l]:void 0,v=g||Or(x)?d:0,S=b!==void 0?b>>>4:Rr(x)?d:0,C=s+S*a;at(x)&&d>=i?m():(v>0||S>0)&&(c===void 0&&(c={qLo:p,qHi:p,tLo:s,tHi:s,ops:[]}),c.qHi=p+v,c.tLo=Math.min(c.tLo,s,C),c.tHi=Math.max(c.tHi,s,C),c.ops.push(y),b!==void 0&&c.ops.push(b),u=u||g||Mr(x)),p+=v,s=C}return m(),f}function Fr(e){let r=e.get("CIGAR");return typeof r=="string"?r:void 0}function Lr(e){let r=e.get("coarseCigar");return typeof r=="string"?r:void 0}function Ge(e){let r=Fr(e),t=r===void 0?Lr(e):void 0;return r!==void 0?Te(r):t!==void 0?_e(t):void 0}var st=["CIGAR","cs","coarseCigar","cg","cr"];function ft(e){return typeof e=="object"&&e!==null&&"refName"in e&&"start"in e&&"end"in e&&typeof e.refName=="string"&&typeof e.start=="number"&&typeof e.end=="number"}function pt(e){let r=e.get("mate");return ft(r)?r:void 0}function ct(e,r,t,o){let n=Math.max(e.start,o.start),i=Math.min(e.end,o.end),a=(r.end-r.start)/Math.max(e.end-e.start,1),f=c=>t===-1?r.end-(c-e.start)*a:r.start+(c-e.start)*a,p=Math.round(f(n)),s=Math.round(f(i));return i>n?{start:n,end:i,mateStart:Math.min(p,s),mateEnd:Math.max(p,s)}:void 0}function ut(e,r,t,o,n){let i={start:e.get("start"),end:e.get("end")},a=e.get("strand")===-1?-1:1,f=i.start>=t.start&&i.end<=t.end,p=f&&o===void 0&&!n?void 0:Ge(e);if(p===void 0){let s=f?{...i,mateStart:r.start,mateEnd:r.end}:ct(i,r,a,t);return s===void 0?[]:[s]}else return(o===void 0?[{...i,mateStart:r.start,mateEnd:r.end,cigar:p}]:ke(p,i.start,r.start,r.end,a,o)).flatMap(c=>{let u=Pe(c.cigar,c.start,c.mateStart,c.mateEnd,a,t.start,t.end);return u===void 0?[]:[u]})}function lt(e,r,t,o,n,i){let a=`:${o.start}-${o.end}${n}`,f=e.toJSON(),p={...f,uniqueId:`${e.id()}${a}`,recordId:f.recordId??e.id(),start:t.start,end:t.end,mate:{...r,start:t.mateStart,end:t.mateEnd}};f.syntenyId!==void 0&&(p.syntenyId=`${String(f.syntenyId)}${a}`);for(let s of st)delete p[s];return i&&t.cigar&&(p.alignmentOps=t.cigar),new N(p)}function Nr(e,r,t,o=!1){let n=pt(e);if(n===void 0)return[e];{let i=ut(e,n,r,t,o);return i.map((a,f)=>lt(e,n,a,r,i.length>1?`/${f}`:"",o))}}var Pr=class extends ze{constructor(){super(...arguments);this.recordsAreAlignments=!0}static{this.capabilities=["getFeatures","getRefNames"]}async hasDataForRefName(){return!0}getFeaturesInMultipleRegions(t,o={}){let{clipToRegion:n,splitAtGapBp:i,keepAlignment:a,...f}=o,p=n&&this.recordsAreAlignments,s=Ye(f.statusCallback);return Ne(t).pipe(W((c,u)=>this.getFeatures(c,{...f,statusCallback:s()}).pipe(W(m=>p?Nr(m,m.get("assemblyName")===c.assemblyName?c:{start:m.get("start"),end:m.get("end")},i,a):[m]),be(),V(m=>({index:u,features:m})))),be(),W(c=>c.sort((u,m)=>u.index-m.index).flatMap(u=>u.features)))}};var De=class extends Error{constructor(t){super(`a pair query names both lanes: queryAssemblyName ${t} came without a targetAssemblyName`);this.name="PairTargetError"}};function Xi(e){let{lanePairs:r,queryAssemblyName:t,targetAssemblyName:o}=e;if(r?.length)return r;if(t===void 0)return[];if(o===void 0)throw new De(t);return[{queryAssemblyName:t,targetAssemblyName:o}]}function Zi(e){let[r]=e;return e.length===1&&r?`Reading ${r.queryAssemblyName} against ${r.targetAssemblyName}`:`Reading ${e.length} lane pairs`}function Ji(e,r){return e[r]??e[He(r)]??r}function mt(e,r){let t=Math.max(1,r);return e>=10*t?Math.ceil(e/t):Math.max(11,Math.ceil(10*e/t))/10}function ta(e,r){if(Ve(e)&&e instanceof Error){let{fitsBp:t}=e;e.message=e.message.replace("to see the graph","to see lanes"),typeof t=="number"&&(e.message=e.message.replace(/^Zoom in to about [\d.,]*\d[KM]?bp/,`Zoom in about ${mt(r,t)}\xD7`))}return e}function ia({target:e,query:r,strand:t,cigar:o,matches:n,columns:i}){let a=`${e.name}:${e.start}-${e.end}|${r.name}:${r.start}-${r.end}`;return new N({uniqueId:a,assemblyName:e.assemblyName,refName:e.refName,start:e.start,end:e.end,type:"match",strand:t==="-"?-1:1,CIGAR:o,syntenyId:a,identity:n/Math.max(i,1),numMatches:n,blockLen:i,mate:{refName:r.refName,start:r.start,end:r.end,assemblyName:r.assemblyName}})}export{N as a,Pr as b,De as c,Xi as d,Zi as e,Ji as f,ta as g,ia as h};
-//# sourceMappingURL=chunk-YMK7HFJV.js.map
+//# sourceMappingURL=chunk-WANYNRGU.js.map

package/dist/chunks/{chunk-EKIQ3ATV.js → chunk-YS3R3J2I.js}

@@ -1,2 +1,2 @@
-import{G as jn,H as Jn,I as un,J as dn,S as Qn,U as Qt,V as mn,Y as Zn,Z as te,d as $n,e as Kn,f as hn,h as Un,i as Yn,j as qn,k as Vn,l as $t,y as zn}from"./chunk-ZWRAQSXC.js";import{a as Bt,g as Xt}from"./chunk-MNFL7BAC.js";var Et=2,ae=1.5,Ke=4,ne=12,Ue=64,ee=24,Ye=48,oe="a thread per pass through a node",pn=t=>t.length>1&&t.some(n=>n.mostPasses>1),ce=t=>t*Et+Math.max(0,t-1)*ae,se=t=>t.reduce((n,o)=>n+o,0);function ie(t,n,o){let e=t.map((a,c)=>n[c]>1?ce(a):o*Math.min(1,a)),s=0,r=t.map(a=>{let c=Math.min(1,a),i=Ke*c*s;return s=Math.max(s,c),i});return{widths:e,gaps:r,band:se(e)+se(r)}}var gn=Et+ae;function Kt(t,n,o=t){let{widths:e,gaps:s,band:r}=ie(t,n,Et),a=-r/2;return e.map((c,i)=>{a+=s[i];let f=n[i]>1?Math.max(0,c-ce(o[i])):0,l=a+f/2+Et/2;return a+=c,l})}var nn=t=>ie(t,t,Et).band,en=t=>Math.min(1,Ye/(nn(t)||1)),is=t=>en(t.map(n=>n.mostPasses))<1?`${oe}, thinned to fit`:oe;function Zt(t,n){let o=t.stepOf[n],e=n-t.starts[o];return t.forward[o]?e:t.starts[o+1]-t.starts[o]-1-e}var Nt=(t,n)=>{let o=n.x-t.x,e=n.y-t.y;return Math.sqrt(o*o+e*e)};function Ft(t){let n=new Float64Array(t.length);for(let o=1;o<t.length;o++)n[o]=n[o-1]+Nt(t[o-1],t[o]);return n}function yn(t,n){let o=new Set;return t.map(e=>{let s=new Map;return e.map(r=>r.map(a=>{let c=s.get(a)??0;s.set(a,c+1);let i=n[a],f=!!i?.length&&!o.has(a);return f&&o.add(a),{id:a,visit:c,owned:f,segments:i}}))})}function qe(t,n,o){let e=[];return t.forEach((s,r)=>{let a=0;for(let M of s)for(let{segments:A}of M)a+=A?.length??0;let c=new Float64Array(a),i=new Float64Array(a),f=0,l=0,h=u();function u(){return{walk:r,ids:[],visits:[],forward:[],owned:[],starts:[0]}}let m=()=>{if(h.ids.length){let M=new Int32Array(f-l);for(let A=0;A<h.ids.length;A++)M.fill(A,h.starts[A],h.starts[A+1]);e.push({...h,xs:c.subarray(l,f),ys:i.subarray(l,f),stepOf:M})}h=u(),l=f},w=(M,A,R)=>{let P=R.x-M,k=R.y*n-A;return Math.sqrt(P*P+k*k)};for(let M of s)M.forEach(({id:A,visit:R,owned:P,segments:k},W)=>{if(!k?.length){m();return}let F=k[0],S=k.at(-1),_;if(f>l){let g=c[f-1],E=i[f-1],x=w(g,E,F),C=w(g,E,S);_=x<=C,Math.min(x,C)>o&&m()}else{let g=M[W+1]?.segments,E=x=>g?.length?Math.min(w(x.x,x.y*n,g[0]),w(x.x,x.y*n,g.at(-1))):0;_=E(S)<=E(F)}h.ids.push(A),h.visits.push(R),h.forward.push(_),h.owned.push(P);for(let g=0;g<k.length;g++){let E=k[_?g:k.length-1-g];c[f]=E.x,i[f]=E.y*n,f++}h.starts.push(f-l)}),m()}),e}function xn(t,n,o){let e=[];for(let s=0;s<n.length;s++){if(!n[s])continue;let r=s;for(;r+1<n.length&&n[r+1];)r++;let a=e.at(-1),c=a?a[1]:0,i=s;for(;i>c&&t[s]-t[i-1]<=o;)i--;let f=r;for(;f+1<t.length&&t[f+1]-t[r]<=o;)f++;a&&i<=a[1]+1?a[1]=f:e.push([i,f]),s=r}return e}function Ve(t,n){let o=Ft(t),e=o.at(-1),s=(c,i)=>{let f=t[i],l=t[Math.min(i+1,t.length-1)],h=o[Math.min(i+1,t.length-1)]-o[i],u=h>0?(c-o[i])/h:0;return{x:f.x+(l.x-f.x)*u,y:f.y+(l.y-f.y)*u}},r=0,a=0;return t.map((c,i)=>{let f=Math.max(0,o[i]-n/2),l=Math.min(e,o[i]+n/2);for(;r<t.length-1&&o[r+1]<=f;)r++;for(;a<t.length-1&&o[a+1]<=l;)a++;let h=s(f,r),u=s(l,a),m=Nt(h,u);return m>0?{nx:-(u.y-h.y)/m,ny:(u.x-h.x)/m}:void 0})}function ze(t,n,o){let e=Ft(t),s=t.slice(),r=[];e.forEach((c,i)=>{let f=r.at(-1);(f===void 0||c-e[f]>=n/4)&&r.push(i)}),r.at(-1)!==t.length-1&&r.push(t.length-1);let a=0;for(;a<r.length;){let c=r[a],i=-1;for(let u=a+1;u<r.length&&e[r[u]]-e[c]<=o;u++){let m=r[u];e[m]-e[c]>Math.PI*n&&Nt(t[c],t[m])<=n&&(i=u)}if(i<0){a++;continue}let f=r[i],l=t[c],h=t[f];for(let u=c+1;u<f;u++){let m=(e[u]-e[c])/(e[f]-e[c]);s[u]={...t[u],x:l.x+(h.x-l.x)*m,y:l.y+(h.y-l.y)*m}}a=i}return s}function le(t,n){let o=t.length,e=Ft(t),s=e[o-1],r=new Float64Array(o+1),a=new Float64Array(o+1),c=new Float64Array(o+1);for(let h=0;h<o;h++){let u=t[h],m=(e[Math.min(h+1,o-1)]-e[Math.max(h-1,0)])/2;r[h+1]=r[h]+m,a[h+1]=a[h]+m*u.x,c[h+1]=c[h]+m*u.y}let i=new Array(o),f=0,l=0;for(let h=0;h<o;h++){let u=t[h],m=Math.min(n,e[h],s-e[h]),w=e[h]-m,M=e[h]+m+1e-9*(1+s);for(;f<o&&e[f]<w;)f++;for(;l<o&&e[l]<M;)l++;let A=r[l]-r[f];i[h]=A>0?{x:(a[l]-a[f])/A,y:(c[l]-c[f])/A}:{x:u.x,y:u.y}}return i}function re(t,n){let o=t.length,e=Ft(t),s=e[o-1],r=new Uint8Array(o),a=(f,l)=>{let h=t[f],u=t[f+1];if(!u)return h;let m=e[f+1]-e[f],w=m>0?(l-e[f])/m:0;return{x:h.x+(u.x-h.x)*w,y:h.y+(u.y-h.y)*w}},c=0,i=0;for(let f=0;f<o;f++){if(e[f]<n||s-e[f]<n)continue;for(;c+1<o&&e[c+1]<=e[f]-n;)c++;for(;i+1<o&&e[i+1]<=e[f]+n;)i++;let l=t[f],h=a(c,e[f]-n),u=a(i,e[f]+n),m=Math.abs((u.x-h.x)*(l.y-h.y)-(u.y-h.y)*(l.x-h.x));r[f]=m>0&&Nt(h,u)*Nt(h,l)*Nt(l,u)/(2*m)<n?1:0}return{tight:r,s:e}}function je(t,n){let o=t.slice(),{tight:e,s}=re(o,n),r=xn(s,Array.from(e,a=>a>0),3*n);for(let a=0;a<8&&r.length;a++)r=r.filter(([c,i])=>{let f=o.slice(c,i+1),l=re(f,n);if(!l.tight.includes(1))return!1;let h=tn(l.s,l.tight,n),u=le(f,n);for(let m=0;m<f.length;m++){let w=Math.min(1,3*h[m]);if(w>0){let M=f[m],A=u[m];o[c+m]={x:M.x+(A.x-M.x)*w,y:M.y+(A.y-M.y)*w}}}return!0});return o}function Je(t,n,o,e,s,r){let a=n.length,c=new Float64Array(a),i=0,f=0,l=0,h=0,u=0;for(let m=0;m<a;m++){for(;i<a&&t[i]-t[m]<=r;){let w=o(i),M=n[i];c[i]=w&&M?w.nx*M.nx+w.ny*M.ny:0,l+=c[i],i++}for(;t[m]-t[f]>r;)l-=c[f++];if(Math.abs(l)>1e-9&&(h=l<0?-1:1),!!h)for(;u<=m;u++)s(u,h)}if(u<a){let m=0;for(let w=0;w<a;w++)m+=e(w)?1:-1;for(;u<a;u++)s(u,m<0?-1:1)}}function Qe(t,n,o,e,s=!0){let r=Math.max(o,2*e),a=Math.PI*e,c=s?a+3*e+r/2:r/2,i=new Map,f=new Map,l=[],h=[],u=w=>({normals:new Array(w),shifts:s?new Array(w):[]}),m=(w,M,A,R)=>{let P=i.get(w);P||(P=[],i.set(w,P)),(P[M]??=[])[A]=R};return t.forEach((w,M)=>{let{walk:A,ids:R,visits:P,owned:k,starts:W,xs:F,ys:S,stepOf:_}=w,g=R.length,E=F.length,x=new Array(g);for(let d=0;d<g;d++)k[d]&&(x[d]=u(W[d+1]-W[d]),f.set(R[d],{run:M,step:d,frame:x[d]}),m(R[d],A,P[d],x[d]));let C=new Float64Array(E);for(let d=1;d<E;d++){let I=F[d]-F[d-1],N=S[d]-S[d-1];C[d]=C[d-1]+Math.sqrt(I*I+N*N)}let J=C[E-1],D=new Int32Array(g).fill(-1),B=new Int32Array(g),Y=new Array(g);for(let d=0;d<g;d++){let I=k[d]?void 0:f.get(R[d]);I&&(D[d]=I.run,B[d]=I.step,Y[d]=I.frame)}let et=new Int32Array(g),ct=new Int32Array(g);for(let d=0;d+1<g;d++){let N=D[d]>=0&&D[d+1]===D[d]?B[d+1]-B[d]:0;et[d+1]=et[d]+(N===1?1:0),ct[d+1]=ct[d]+(N===-1?1:0)}let tt=new Array(g),b=0,L=0;for(let d=0;d<g;d++){if(!s){tt[d]=!k[d];continue}let I=C[W[d]]-c,N=C[W[d+1]-1]+c;for(;C[b]<I;)b++;for(;L+1<E&&C[L+1]<=N;)L++;let j=_[Math.max(0,b-1)],st=_[Math.min(E-1,L+1)],H=st-j,it=et[st]-et[j],gt=ct[st]-ct[j];tt[d]=!k[d]&&I>=0&&N<=J&&H>0&&(it===H||gt===H)}for(let d=0;d<g;d++){if(k[d])continue;let I=Y[d];x[d]=!s&&tt[d]?I:tt[d]?{normals:I.normals,shifts:I.shifts}:u(I.normals.length),m(R[d],A,P[d],x[d])}h.push(x);let q=new Array(E);for(let d=0;d<E;d++)q[d]=!tt[_[d]];for(let[d,I]of xn(C,q,c)){let N=[];for(let H=d;H<=I;H++)N.push({x:F[H],y:S[H]});let j=s?je(le(ze(N,e/2,a),e/2),e/2):N,st=Ve(j,r);Je(Ft(j),st,H=>{let it=_[d+H];return(k[it]?x[it]:Y[it])?.normals[Zt(w,d+H)]},H=>w.forward[_[d+H]],(H,it)=>{let gt=d+H,Lt=_[gt];if(tt[Lt])return;let Ht=Zt(w,gt),Rt=st[H];x[Lt].normals[Ht]=Rt&&(it>0?Rt:{nx:-Rt.nx,ny:-Rt.ny}),s&&(x[Lt].shifts[Ht]={dx:j[H].x-N[H].x,dy:(j[H].y-N[H].y)/n})},r)}if(!s){l.push(C);return}let ot=new Float64Array(E),G=0,V=0;for(let d=0;d<E;d++){let I=x[_[d]].shifts[Zt(w,d)],N=F[d]+(I?.dx??0),j=S[d]+(I?.dy??0)*n;ot[d]=d?ot[d-1]+Math.sqrt((N-G)**2+(j-V)**2):0,G=N,V=j}l.push(ot)}),{frames:i,arcs:l,stepFrames:h}}function fe(t,n,o,e){let s=new Array(n.length),r=[],a=0,c=0;for(let i=0;i<n.length;i++){for(;c<n.length&&t[c]-t[i]<=o;){for(;r.length>a&&e*n[r.at(-1)]<=e*n[c];)r.pop();r.push(c++)}for(;t[i]-t[r[a]]>o;)a++;s[i]=n[r[a]]}return s}function tn(t,n,o,e=()=>!0){let s=n.length,r=new Float64Array(s+1),a=new Float64Array(s+1);for(let l=0;l<s;l++){let h=e(n[l])?s>1?(t[Math.min(l+1,s-1)]-t[Math.max(l-1,0)])/2:1:0;r[l+1]=r[l]+h,a[l+1]=a[l]+h*n[l]}let c=new Float64Array(s),i=0,f=0;for(let l=0;l<s;l++){for(;t[l]-t[i]>o;)i++;for(;f<s&&t[f]-t[l]<=o;)f++;let h=r[f]-r[i];c[l]=h>0?(a[f]-a[i])/h:n[l]}return c}var Ze=[0];function to(t){for(let n of t.values())if(n>1)return!0;return!1}function no(t,n,o,e,s){if(!to(n))return{span:n,nodeThreads:new Map,threadPasses:new Map,threadAt:new Map,linkThreads:new Map};let r=new Map,a=[],c=[],i=[],f=[],l=[],h=[],u=[];for(let S of t){let _=[],g=[];for(let b of S){let L=r.get(b);L===void 0&&(L=a.length,r.set(b,L),a.push(b),c.push(0),i.push(0)),g.push(L);let q=o[b],ot=q?.[Math.floor(q.length/2)];_.push(ot?{x:ot.x,y:ot.y*e}:_.at(-1)??{x:0,y:0})}let E=Ft(_),x=S.map(b=>n.get(b)??1),C=fe(E,x,s/2,1),J=g.map(b=>++i[b]),D=S.length,B=new Int32Array(D),Y=-1;for(let b=0;b<D;b++)Y=x[b]===C[b]?b:Y,B[b]=Y;let et=new Int32Array(D);Y=-1;for(let b=D-1;b>=0;b--)Y=x[b]===C[b]?b:Y,et[b]=Y;let ct=new Array(D),tt=new Array(D).fill(NaN);for(let b=0;b<D;b++){let L=B[b],q=et[b],ot=L<0?q:q<0||E[b]-E[L]<=E[q]-E[b]?L:q,G=V=>Math.min(J[V],C[b])-1;if(ct[b]=G(ot),x[b]===1&&L>=0&&q>=0&&G(q)!==G(L)){let V=(E[b]-E[L])/(E[q]-E[L]||1);tt[b]=G(L)+(G(q)-G(L))*V}c[g[b]]=Math.max(c[g[b]],C[b])}f.push(g),l.push(J),h.push(ct),u.push(tt)}let m=[],w=[],M=(S,_)=>{let g=c[S],E=m[S]??=new Set;for(let x=0;x<g;x++)for(let C of[_-x,_+x])if(C>=0&&C<g&&!E.has(C))return C;return _},A=[];f.forEach((S,_)=>{S.forEach((g,E)=>{if(c[g]>1){let x=u[_][E],C=M(g,Number.isNaN(x)?h[_][E]:Math.round(x));m[g].add(C),(w[g]??=[])[l[_][E]]=C,Number.isNaN(x)||((A[g]??=[])[C]=x)}})});let R=new Map,P=new Map,k=new Map,W=new Map;a.forEach((S,_)=>{A[_]&&W.set(S,A[_]),R.set(S,c[_]),P.set(S,m[_]?[...m[_]].sort((E,x)=>E-x):Ze);let g=[];w[_]?.forEach((E,x)=>{g[E]=x-1}),k.set(S,g)});let F=new Map;return f.forEach((S,_)=>{let g=l[_];for(let E=1;E<S.length;E++){let x=S[E-1],C=S[E],J=[w[x]?.[g[E-1]]??0,w[C]?.[g[E]]??0],D=F.get(a[x]);D||(D=new Map,F.set(a[x],D));let B=D.get(a[C]);B?B.some(([Y,et])=>Y===J[0]&&et===J[1])||B.push(J):D.set(a[C],[J])}}),{span:R,nodeThreads:P,threadPasses:k,threadAt:W,linkThreads:F}}function eo(t,n,o,{reach:e,taper:s}){let r=new Map;return t.forEach((a,c)=>{let i=n[c],f=a.ids.map((l,h)=>{let u=a.starts[h+1]-a.starts[h],m=Math.floor(u/2);return i[a.starts[h]+(a.forward[h]?m:u-1-m)]});for(let[l,h]of xn(f,a.owned,e/2+s/2)){let u=f.slice(l,h+1),m=a.ids.slice(l,h+1),w=o.map(M=>{let A=m.map(R=>M.get(R)??0);return A.every(R=>R===A[0])?{slot:A,held:A}:{slot:tn(u,fe(u,A,e/2,1),s/2),held:tn(u,A,s/2,R=>R>0)}});m.forEach((M,A)=>{a.owned[l+A]&&r.set(M,{slot:w.map(R=>R.slot[A]),held:w.map(R=>R.held[A])})})}}),r}function oo(t,n,o,e,s,r,a){let c=Kt(s,s),i=new Map,f=l=>{let h=i.get(l);if(!h){let u=e.get(l);h=u?Kt(u.slot,s,u.held):c,i.set(l,h)}return h};t.forEach((l,h)=>{let{walk:u,ids:m,visits:w,starts:M}=l,{threadPasses:A,threadAt:R}=r[u],P=new Float64Array(l.xs.length);m.forEach((W,F)=>{let S=Math.max(0,A.get(W)?.indexOf(w[F])??0),_=R.get(W)?.[S]??S;P.fill(f(W)[u]+_*gn,M[F],M[F+1])});let k=tn(o[h],P,a);n[h].forEach((W,F)=>{let S=M[F],_=M[F+1],g=!0;for(let x=S+1;g&&x<_;x++)g=Math.abs(k[x]-k[S])<1e-9;if(g){W.offset=k[S];return}let E=new Array(_-S);for(let x=S;x<_;x++)E[Zt(l,x)]=k[x];W.offsets=E})})}function he(t,n,o,e,s=yn(t.map(r=>r.route),n)){let r=pn(t),a=t.map(M=>M.mostPasses),c=Ue*e,i=qe(s,o,ne*e),f=nn(a)*(r?en(a):1)*e,l=Qe(i,o,ne*e,f,r),h=r?t.map(M=>no(M.route,M.passes,n,o,c)):void 0,u=h?eo(i,l.arcs,h.map(M=>M.span),{reach:c,taper:ee*e}):void 0;u&&h&&oo(i,l.stepFrames,l.arcs,u,a,h,ee/2*e);let m={dx:0,dy:0},w=new Set;for(let M of l.frames.values())for(let{shifts:A}of M.flat())if(!w.has(A)){w.add(A);for(let R of A)m.dx=Math.max(m.dx,Math.abs(R?.dx??0)),m.dy=Math.max(m.dy,Math.abs(R?.dy??0))}return{lines:l,threads:h,spans:u,furthestShift:m}}function U(t,n,o,e){return(e<<24|o<<16|n<<8|t)>>>0}function wn(t){return t&255}function Mn(t){return t>>>8&255}function An(t){return t>>>16&255}function En(t){return t>>>24&255}function ue(t){return`rgba(${wn(t)},${Mn(t)},${An(t)},${En(t)/255})`}function fs(t,n){return`rgba(${Math.round(t[0]*255)},${Math.round(t[1]*255)},${Math.round(t[2]*255)},${n})`}function vt(t,n){return U(wn(t),Mn(t),An(t),Math.round(En(t)*n))}function hs(t,n){let o=Math.max(0,1-1/n),e=s=>Math.round(s+(255-s)*o);return U(e(wn(t)),e(Mn(t)),e(An(t)),En(t))}var de=300,Ut=.7,Yt=.5;function so(t){return`hsl(${t}, ${Ut*100}%, ${Yt*100}%)`}function qt(t){return Math.max(0,Math.min(1,t))*de}function vn(t,n){return qt((t-n.start)/(n.end-n.start))}var ro=30;function ds({start:t,bp:n,reversed:o},e){let s=vn(t,e),r=vn(t+n,e);if(r-s<1)return[(s+r)/2];let a=Math.ceil((r-s)/ro);return Array.from({length:a+1},(c,i)=>vn(t+n*(o?a-i:i)/a,e))}var ao=Array.from({length:7},(t,n)=>({offset:n/6,color:so(n/6*de)})),ms=`linear-gradient(to right, ${ao.map(t=>`${t.color} ${t.offset*100}%`).join(", ")})`;var co=$t();function me(t,n,o,e,s,r,a=!1){return co(t,[n,o.scaleX,o.scaleY,e,r,a,s],()=>{let c=new Map;for(let i=0;i<n.edges.length;i++){let f=e?.get(i),l=zn(t,n.edges[i],o,f,f&&r?.[i],a);l&&c.set(i,l)}return c})}var io=4;function lo(t){let n=new Map;for(let o of t.edges)Bt(n,o.from,o.to),Bt(n,o.to,o.from);return n}function fo({nodeId:t,nodeById:n,neighbors:o}){let e=new Set([t]),s=[t],r=1/0,a=-1/0;for(let c=0;c<io&&s.length>0;c++){let i=[];for(let f of s){let l=o.get(f);if(l){for(let h of l)if(!e.has(h)){e.add(h);let u=n.get(h);u&&Xt(u)?(r=Math.min(r,u.stable.start+u.length),a=Math.max(a,u.stable.start)):i.push(h)}}}s=i}return r===1/0?void 0:{start:Math.min(r,a),end:Math.max(r,a)}}function ho({nodeId:t,nodeById:n,neighbors:o}){let e=n.get(t);return e===void 0?void 0:Xt(e)?{start:e.stable.start,end:e.stable.start+e.length}:fo({nodeId:t,nodeById:n,neighbors:o})}function pe(t){let n=new Map(t.nodes.map(s=>[s.id,s])),o=lo(t),e=new Map;for(let s of t.nodes){let r=ho({nodeId:s.id,nodeById:n,neighbors:o});r&&e.set(s.id,(r.start+r.end)/2)}return e}var uo=U(119,119,119,217),ge=U(136,136,136,217),mo=U(24,24,28,240),ye=2.2,Te=U(160,160,160,255),Vt=.18,po=.45,Ns=ue(vt(Te,Vt)),go=11,yo=1.2,xo=1e-6,wo=7,Mo=3,Ao=3,Eo=1.5,xe=3,vo=.5,_o=.45,_n=12,bo=1e-6,pt=new Float64Array(64),_t=new Float64Array(64),bt=new Float64Array(64);function Ro(t,n,o,e){let s=t.length*_n+1;pt.length<s&&(pt=new Float64Array(s),_t=new Float64Array(s),bt=new Float64Array(s));let r=t[t.length-1];pt[0]=r.x1,_t[0]=r.y1,bt[0]=0;let a=1,c=0;for(let i=t.length-1;i>=0&&c<e;i--){let f=t[i];for(let l=1;l<=_n&&c<e;l++){let h=1-(l/_n)**2,u=1-h,m=u*u*u,w=3*u*u*h,M=3*u*h*h,A=h*h*h,R=m*f.x0+w*f.cx0+M*f.cx1+A*f.x1,P=m*f.y0+w*f.cy0+M*f.cy1+A*f.y1;c+=Math.hypot(R-pt[a-1],(P-_t[a-1])*o)*n,pt[a]=R,_t[a]=P,bt[a]=c,a++}}return a}function we(t,n){let o=1;for(;o<t-1&&bt[o]<n;)o++;let e=bt[o-1],s=bt[o],r=s>e?Math.min(1,Math.max(0,(n-e)/(s-e))):0;return{x:pt[o-1]+(pt[o]-pt[o-1])*r,y:_t[o-1]+(_t[o]-_t[o-1])*r}}function So({curves:t,edgeHalfWidth:n,nodeHalfWidth:o,scale:e,yToX:s,color:r,fromSegments:a,toSegments:c}){let i=wo+Mo*n,f=Ro(t,e,s,o+xe*i),l=bt[f-1],h=l<bo,u=Math.min(o,l),m=h?Math.min(1,Vn(a,e,e*s)/i):1;if(h?m<vo:l<xe*i)return;let w=we(f,u),M=we(f,u+i*m),A=w.x-M.x,R=(w.y-M.y)*s,P=t[t.length-1];return{x:w.x,y:w.y,angle:Math.hypot(A,R)>0?Math.atan2(R,A):Wo(P,s,Oo(P,c)),length:i*m,halfWidth:(Ao+Eo*n)*m,color:r}}var Me=[[0,0]],Co=[0],Ae={dx:0,dy:0};function Oe(t,n,o){let e=s=>Math.hypot(s.x-t.x,(s.y-t.y)*o);return e(n[0])<e(n.at(-1))}function To(t,n,o,e,s){return e?Un(t).from==="start":Oe({x:o.x0,y:o.y0},n,s)}function Oo(t,n){if(n.length<2)return;let o=n[0],e=n[n.length-1];return Math.hypot(t.x1-o.x,t.y1-o.y)<=Math.hypot(t.x1-e.x,t.y1-e.y)?{from:o,to:n[1]}:{from:e,to:n[n.length-2]}}function Ee(t,n){if(!t||!n)return;let o=n.x-t.x,e=n.y-t.y,s=Math.hypot(o,e);return s>0?{nx:-e/s,ny:o/s}:void 0}var ke=.1,ko=1/Math.sqrt(ke);function ve(t,n=1){let o=n===1?t:t.map(e=>({x:e.x,y:e.y*n}));return o.map((e,s)=>{let r=Ee(o[s-1],e),a=Ee(e,o[s+1]);if(r&&a){let c=(r.nx+a.nx)/2,i=(r.ny+a.ny)/2,f=r.nx*c+r.ny*i;return f>ke?{nx:c/f,ny:i/f}:{nx:c,ny:i}}return r??a??{nx:0,ny:0}})}function _e(t,n,o,e=1){let s=new Array(t.length);for(let r=0;r<t.length;r++){let a=typeof o=="number"?o:o[r];s[r]={x:t[r].x+n[r].nx*a,y:t[r].y+n[r].ny*a/e}}return s}function Rn(t,n,o){let e=(1-Math.abs(2*o-1))*n,s=e*(1-Math.abs(t/60%2-1)),r=o-e/2,a=0,c=0,i=0;return t<60?(a=e,c=s):t<120?(a=s,c=e):t<180?(c=e,i=s):t<240?(c=s,i=e):t<300?(a=s,i=e):(a=e,i=s),[a+r,c+r,i+r]}function on(t,n,o,e=1){let[s,r,a]=Rn(t,n,o);return U(Math.round(s*255),Math.round(r*255),Math.round(a*255),Math.round(e*255))}var Io=[[68,1,84],[59,82,139],[33,145,140],[94,201,98],[253,231,37]],Po=[[237,137,44],[158,42,122]],No=[[220,50,50],[50,120,220]];function bn(t,n){let o=Math.max(0,Math.min(1,n))*(t.length-1),e=Math.min(t.length-2,Math.floor(o)),s=o-e,r=t[e],a=t[e+1];return U(Math.round(r[0]+(a[0]-r[0])*s),Math.round(r[1]+(a[1]-r[1])*s),Math.round(r[2]+(a[2]-r[2])*s),255)}function Fo(t,n){return on(jn(t),un,dn,n)}var Ie=[60,65,72],Sn=U(...Ie,255),Fs=`rgb(${Ie.join(", ")})`;function Lo(t,n){let o=n.midpoints.get(t.id);return Xt(t)&&o!==void 0?(o-n.start)/n.span:void 0}function Ls(t,n){let o=pe(t);if(n&&n.end>n.start)return{start:n.start,span:n.end-n.start,midpoints:o};let e=1/0,s=-1/0;for(let r of o.values())e=Math.min(e,r),s=Math.max(s,r);return{start:e===1/0?0:e,span:s>e?s-e:1,midpoints:o}}function Ho(t,n){let o=1/0,e=-1/0,s=1/0,r=-1/0,a=0;for(let c of t.nodes)c.stable!==void 0&&c.stable.rank>a&&(a=c.stable.rank),c.depth<o&&(o=c.depth),c.depth>e&&(e=c.depth),c.length<s&&(s=c.length),c.length>r&&(r=c.length);return{minDepth:o,maxDepth:e,minLength:s,maxLength:r,maxRank:a,nodeCount:t.nodes.length,referenceRamp:n}}function Do(t,n,o,e){switch(o){case"random":return Fo(t.id,1);case"depth":return bn(Io,e.maxDepth>e.minDepth?(t.depth-e.minDepth)/(e.maxDepth-e.minDepth):.5);case"node-length":return bn(No,e.maxLength>e.minLength?(t.length-e.minLength)/(e.maxLength-e.minLength):.5);case"stable-rank":return t.stable===void 0?U(160,160,160,255):t.stable.rank===0?U(52,152,219,255):bn(Po,e.maxRank>1?(t.stable.rank-1)/(e.maxRank-1):0);case"reference-position":{let s=e.referenceRamp;if(s===void 0)return U(160,160,160,255);let r=Lo(t,s);return r===void 0?Sn:on(qt(r),Ut,Yt)}case"grey":return U(160,160,160,255);case"rainbow":{let s=e.nodeCount>1?n/e.nodeCount*360:0;return on(s,.75,.5)}default:return U(52,152,219,255)}}function Wo(t,n=1,o){let e=[[t.cx1,t.cy1],[t.cx0,t.cy0],[t.x0,t.y0]];for(let[s,r]of e){let a=t.x1-s,c=(t.y1-r)*n;if(Math.hypot(a,c)>0)return Math.atan2(c,a)}return o?Math.atan2((o.to.y-o.from.y)*n,o.to.x-o.from.x):0}function Go(t,n){let o=!1;for(let e=0;e<t.length-1&&!o;e++){let s=t[e],r=t[e+1];o=Math.max(s.x,r.x)>=n.minX&&Math.min(s.x,r.x)<=n.maxX&&Math.max(s.y,r.y)>=n.minY&&Math.min(s.y,r.y)<=n.maxY}return o}function be(t,n,o=0,e=0){for(let s of t){let r=Math.min(s.x0,s.cx0,s.cx1,s.x1),a=Math.max(s.x0,s.cx0,s.cx1,s.x1),c=Math.min(s.y0,s.cy0,s.cy1,s.y1),i=Math.max(s.y0,s.cy0,s.cy1,s.y1);if(a>=n.minX-o&&r<=n.maxX+o&&i>=n.minY-e&&c<=n.maxY+e)return!0}return!1}var Re=new WeakMap;function Bo(t){let n=Re.get(t);if(!n){let o=[],e=new Map,s=t.paths??[];for(let r=0;r<s.length;r++)o.push(on(Jn(r,s.length),un,dn,.85)),e.has(s[r].name)||e.set(s[r].name,r);n={pathColorByIndex:o,pathIndexByName:e},Re.set(t,n)}return n}var Se=new WeakMap,Xo=new Map;function $o(t){let n=Se.get(t);if(!n){n=new Map;for(let[o,e]of(t.paths??[]).entries())for(let s of new Set(e.nodeIds))Bt(n,s,o);Se.set(t,n)}return n}var Ko=$t(),Uo=$t(),Ce=new WeakMap;function Yo(t){let n=Ce.get(t);if(!n){n=new Map;for(let{from:o,to:e}of t.edges){let s=n.get(o);s||(s=new Set,n.set(o,s)),s.add(e)}Ce.set(t,n)}return n}function Hs(t){let{nodePositions:n,graph:o,nodeById:e,colorScheme:s,contigThickness:r,connectorThickness:a,drawPaths:c,nodeWidth:i="uniform",edgeWidth:f="uniform",highlight:l,axis:h,linearLayout:u,viewportBounds:m,referenceRamp:w,deletions:M,deletionRoutes:A,stranded:R,hiddenEdges:P,version:k=0}=t,W=Qn(o,i),F=f==="walks"?Zn(o):0,S=h.scaleX,_=1/Math.max(S,xo),g=Yn(h),E=me(n,o,h,M,k,A,R),x=[],C=new Map,J=[],D=new Map,B=[],Y=new Map,et=Ho(o,w),ct=new Map;if(s==="rainbow")for(let p=0;p<o.nodes.length;p++)ct.set(o.nodes[p].id,p);let tt=o.paths?.length??0,{pathColorByIndex:b,pathIndexByName:L}=Bo(o),q=p=>b[L.get(p)??-1]??ge,ot=c&&tt>1?$o(o):Xo,G=l?.walks??[],V=pn(G),d=G.map(p=>p.mostPasses),I=V?en(d):1,N=l&&G.length>1?Ko(l,[n,k,h.scaleX,h.scaleY],()=>he(G,n,g,_,Uo(l,[n,k],()=>yn(G.map(p=>p.route),n)))):void 0,j=N?.lines,st=N?.threads,H=N?.spans,it=V?Kt(d,d):[],gt=new Map,Lt=p=>{let y=gt.get(p);if(!y){let v=H?.get(p);y=v?Kt(v.slot,d,v.held):it,gt.set(p,y)}return y},Ht=(p,y,v,T)=>V?(Lt(p)[v]+T*gn)*I:(v-(G.length-1)/2)*y,Rt=(p,y,v)=>{let T=p?.offsets?.[y]??p?.offset;return T===void 0?v:T*I},Pn=p=>V?Et/2*I:p/2,Nn=new Map,Fn=new WeakMap,Ln=(p,y,v)=>st?.[p]?.threadPasses.get(y)?.[v]??0,rn=(p,y)=>{let v=Nn.get(p);return v||(v=ve(y,g),Nn.set(p,v)),v},We=(p,y,v)=>{if(!v)return rn(p,y);let T=Fn.get(v.normals);return T||(T=rn(p,y).map((O,X)=>v.normals[X]??O),Fn.set(v.normals,T)),T},Hn=new Map,an=p=>{let y=Hn.get(p);if(y===void 0){let v=e.get(p);y=mn(v?Qt(v,r,i,W):r,G.length),Hn.set(p,y)}return y},Dn=(p,y,v,T,O,X)=>{let Q=T?0:v.length-1,z=y?.[O]?.[Ln(O,p,X)],rt=z?.offsets?.[Q]??z?.offset;return{normal:z?.normals[Q]??rn(p,v)[Q]??{nx:0,ny:0},shift:z?.shifts[Q]??Ae,offset:rt===void 0?Ht(p,an(p),O,X):rt*I}},Ge=(p,y)=>{if(!m)return!0;let v=V?nn(d)*I:(G.length-1)/2*an(y),T=ko*v*_;return be(p,m,T+(N?.furthestShift.dx??0),T/g+(N?.furthestShift.dy??0))},Be=(p,y,v)=>{let T=st?.[p]?.linkThreads;if(!T?.size)return Me;let O=T.get(y)?.get(v),X=Yo(o).get(v)?.has(y)?void 0:T.get(v)?.get(y);if(!X)return O??Me;let Q=X.map(([z,rt])=>[rt,z]);return O?[...O,...Q]:Q},cn=(p,y,v)=>G[p]?.passColors.get(y)?.[st?.[p]?.threadPasses.get(y)?.[v]??0],Wn=new WeakMap,Xe=(p,y)=>{if(!y||!V)return p;let v=Wn.get(y.shifts);if(!v){let{shifts:T}=y;v=p.map((O,X)=>{let{dx:Q,dy:z}=T[X]??Ae;return{...O,x:O.x+Q,y:O.y+z}}),Wn.set(y.shifts,v)}return v},$e=S>(u?1:_o);for(let p=0;p<o.edges.length;p++){let y=o.edges[p],v=n[y.from],T=n[y.to],O=E.get(p);if(!v?.length||!T?.length||!O||P?.has(p))continue;let X=y.pathIds?.length??0,z=M?.get(p)!==void 0,rt=l?.edgeIndexes.has(p)??!1,Dt=a/2*(z?ye:1),St=te(X,F,f),Ct=a/2*(z?f==="walks"&&F>0?Math.max(1,St):ye:St),lt=c&&X>0,Tt=z?mo:uo,yt=!l||rt?Tt:vt(Tt,Vt),ut=e.get(y.to),Wt=(ut?Qt(ut,r,i,W):r)/2,$=K=>!m||be(K,m),zt=K=>$n(K,go/S,g,m),jt=(K,Z,nt)=>{if(!z){B.push({curves:K,thickness:Z,color:nt});return}for(let mt of zt(K))B.push({curves:mt.curves,thickness:Z,color:nt})},xt=(K,Z,nt,mt,kt,Mt,It,at,Gn)=>{B.push({curves:K,thickness:Z,color:nt,walk:mt,pass:kt,normal:Mt,offsetX:It,endNormal:at,endOffsetX:Gn})},Ot=K=>{let Z=$e?So({curves:K,edgeHalfWidth:z||lt?a/2:Ct,nodeHalfWidth:Wt,scale:S,yToX:g,color:yt,fromSegments:v,toSegments:T}):void 0;Z&&J.push(Z)},dt=B.length,Gt=J.length,wt=l?.walks.length&&rt&&!lt?l.walks:void 0;if(wt&&!Ge(O,y.from))continue;if(wt){let K=To(y,v,O[0],R,g),Z=O.at(-1),nt=Oe({x:Z.x1,y:Z.y1},T,g),mt=wt.length===1,kt=Pn(an(y.from)),Mt=j?.frames.get(y.from),It=j?.frames.get(y.to);for(let at=0;at<wt.length;at++)if(wt[at].edgeIndexes.has(p))for(let[ln,Bn]of Be(at,y.from,y.to)){let ht=Dn(y.from,Mt,v,K,at,ln),Pt=V?Dn(y.to,It,T,nt,at,Bn):ht,At=mt?0:ht.offset*_,fn=V?Pt.offset*_:At,Xn=V?Kn(O,ht.shift.dx+ht.normal.nx*At,ht.shift.dy+ht.normal.ny*At/g,Pt.shift.dx+Pt.normal.nx*fn,Pt.shift.dy+Pt.normal.ny*fn/g):At===0?O:hn(O,ht.normal.nx*At,ht.normal.ny*At/g);$(Xn)&&xt(Xn,kt,cn(at,y.from,ln)??cn(at,y.to,Bn)??Tt,at,ln,ht.normal,At,Pt.normal,fn)}B.length>dt&&Ot(O)}else if(!lt)$(O)&&(jt(O,Ct,yt),Ot(O));else{let K=qn(v,T,X,h),Z=Math.floor((X-1)/2);for(let nt=0;nt<X;nt++){let{x:mt,y:kt}=K[nt],Mt=mt===0&&kt===0?O:hn(O,mt,kt);if(!$(Mt))continue;let It=q(y.pathIds[nt]);jt(Mt,Dt,l&&(l.walks.length?!l.names.has(y.pathIds[nt]):!rt)?vt(It,Vt):It),nt===Z&&Ot(Mt)}}let Jt=B.length-dt;Jt>0&&Y.set(p,{start:dt,count:Jt});let ft=J.length-Gt;ft>0&&D.set(p,{start:Gt,count:ft})}for(let[p,y]of Object.entries(n)){let v=e.get(p);if(!v||m&&!Go(y,m))continue;let T=l!==void 0&&!l.nodeIds.has(p),O=T?Te:Do(v,ct.get(p)??0,s,et),X=T?vt(O,Vt):v.moved?vt(O,po):O,Q=Qt(v,r,i,W),z=Q/2,rt=x.length,Dt=ot.get(p),St=Q/tt,Ct=y.length>=2,lt=l?.walks.length&&!T&&!Dt?.length?l.walks:void 0;if(Ct&&lt){let yt=mn(Q,lt.length),ut=Pn(yt),Wt=j?.frames.get(p);for(let $=0;$<lt.length;$++){let zt=lt[$].colors.get(p);if(zt===void 0)continue;let jt=st?.[$]?.nodeThreads.get(p)??Co;for(let xt of jt){let Ot=cn($,p,xt)??zt;if(lt.length===1){x.push({points:y,thickness:ut,color:Ot,walk:$,pass:xt});continue}let dt=Wt?.[$]?.[Ln($,p,xt)],Gt=We(p,y,dt),wt=Xe(y,dt),Jt=Ht(p,yt,$,xt),ft=dt?.offsets?.map(Z=>Z*I*_),K=ft?ft[Math.floor(ft.length/2)]:Rt(dt,0,Jt)*_;x.push({points:_e(wt,Gt,ft??K,g),thickness:ut,color:Ot,walk:$,pass:xt,normals:Gt,offsetX:K,...ft&&{offsets:ft}})}}}else if(Ct&&Dt?.length&&St>=yo){let yt=ve(y,g);for(let ut of Dt){let Wt=(ut-(tt-1)/2)*St*_,$=b[ut]??ge;x.push({points:_e(y,yt,Wt,g),thickness:St/2,color:T?vt($,Vt):$})}}else Ct&&x.push({points:y,thickness:z,color:X});let Tt=x.length-rt;Tt>0&&C.set(p,{start:rt,count:Tt})}return{nodeStrokes:x,nodeStrokeRuns:C,arrows:J,arrowRuns:D,edgeCurves:B,edgeCurveRuns:Y}}var Fe=[{value:"progress",label:"Progress along the walk"},{value:"walk",label:"One colour for the walk"},{value:"reference",label:"Reference position"}],On=[{value:"grey",label:"Grey to black",ends:["#a3a3a3","#151515"]},{value:"blue",label:"Cyan to navy",ends:["#6ee0f0","#0b2c7a"]},{value:"red",label:"Yellow to red",ends:["#ffd24a","#b3121b"]},{value:"purple",label:"Pink to plum",ends:["#f5a3d8","#5e1a6e"]},{value:"green",label:"Lime to forest",ends:["#b6e36c","#0b5d3b"]},{value:"orange",label:"Peach to rust",ends:["#ffc285","#8f3a00"]},{value:"rainbow",label:"Rainbow"}],Cn=["blue","red","purple","green"],qo=t=>Fe.some(n=>n.value===t),Vo=t=>On.some(n=>n.value===t);function zo(t,n,o,e=!0){let{field:s,scheme:r}=t.color??{},a=qo(s)?s:e?"progress":"walk",c=n?"grey":Cn[o%Cn.length],i=Vo(r)?r==="rainbow"&&a!=="reference"?c:r:c,f=Math.floor(o/Cn.length)%Pe.length;return a==="walk"&&i===c&&f>0?{field:a,scheme:i,shade:Pe[f]}:e||a==="walk"?{field:a,scheme:i}:{field:a,scheme:i,darkest:jo}}var jo=.55,kn=.5,Pe=[kn,.85,.2],Jo=.08,Ne=({field:t,scheme:n})=>t!=="walk"&&n!=="rainbow";function Qo(t){let n=new Map;for(let e of t)Ne(e)&&n.set(e.scheme,(n.get(e.scheme)??0)+1);let o=new Map;return t.map(e=>{let s=Ne(e)?n.get(e.scheme):1;if(s<2)return e;let r=o.get(e.scheme)??0;o.set(e.scheme,r+1);let a=Jo/2;return{...e,stretch:[r/s+(r>0?a:0),(r+1)/s-(r<s-1?a:0)]}})}var Le=({stretch:t},n)=>t?t[0]+(t[1]-t[0])*n:n,Zo=t=>t<=.04045?t/12.92:((t+.055)/1.055)**2.4,ts=t=>t<=.0031308?t*12.92:1.055*t**(1/2.4)-.055;function ns(t){let[n,o,e]=[1,3,5].map(c=>Zo(Number.parseInt(t.slice(c,c+2),16)/255)),s=Math.cbrt(.4122214708*n+.5363325363*o+.0514459929*e),r=Math.cbrt(.2119034982*n+.6806995451*o+.1073969566*e),a=Math.cbrt(.0883024619*n+.2817188376*o+.6299787005*e);return[.2104542553*s+.793617785*r-.0040720468*a,1.9779984951*s-2.428592205*r+.4505937099*a,.0259040371*s+.7827717662*r-.808675766*a]}function es([t,n,o]){let e=(t+.3963377774*n+.2158037573*o)**3,s=(t-.1055613458*n-.0638541728*o)**3,r=(t-.0894841775*n-1.291485548*o)**3;return[4.0767416621*e-3.3077115913*s+.2309699292*r,-1.2684380046*e+2.6097574011*s-.3413193965*r,-.0041960863*e-.7034186147*s+1.707614701*r].map(a=>ts(Math.max(0,Math.min(1,a)))*255)}var Tn=new Map;function os(t){if(!Tn.has(t)){let n=On.find(o=>o.value===t);Tn.set(t,n&&"ends"in n?n.ends.map(ns):void 0)}return Tn.get(t)}function In(t,n,o=0){let e=Math.max(0,Math.min(1,n)),s=os(t);if(!s)return Rn(qt(e),Ut,Yt).map(l=>l*255);let[r,a]=s,c=r[0],i=a[0],f=i<o&&c>o?(c-o)/(c-i):1;return es(r.map((l,h)=>l+(a[h]-l)*e*f))}function He(t,n,o){let[e,s,r]=In(t,n,o).map(Math.round);return`rgb(${e}, ${s}, ${r})`}function sn(t,n,o){let[e,s,r]=In(t,n,o).map(Math.round);return U(e,s,r,255)}function ss(t,n){let{field:o,scheme:e,darkest:s,shade:r=kn}=t;return o==="walk"?sn(e,r):n===void 0?De:sn(e,Le(t,n),s)}var De=Sn;function rs(t){let{field:n,scheme:o,darkest:e,shade:s=kn}=t,r=(a,c)=>({offset:a,color:He(o,c,e),abgr:sn(o,c,e)});return n==="walk"?[r(0,s)]:Array.from({length:7},(a,c)=>r(c/6,Le(t,c/6)))}export{lo as a,ho as b,Et as c,pn as d,is as e,U as f,ue as g,fs as h,vt as i,hs as j,so as k,ds as l,ao as m,ms as n,me as o,Ns as p,Rn as q,Fs as r,Lo as s,Ls as t,Ho as u,Do as v,Hs as w,Fe as x,On as y,zo as z,Qo as A,ss as B,De as C,rs as D};
-//# sourceMappingURL=chunk-EKIQ3ATV.js.map
+import{G as jn,H as Jn,I as un,J as dn,S as Qn,U as Qt,V as mn,Y as Zn,Z as te,d as $n,e as Kn,f as hn,h as Un,i as Yn,j as qn,k as Vn,l as $t,y as zn}from"./chunk-DKQFTMWL.js";import{a as Bt,g as Xt}from"./chunk-HICKAMKK.js";var Et=2,ae=1.5,Ke=4,ne=12,Ue=64,ee=24,Ye=48,oe="a thread per pass through a node",pn=t=>t.length>1&&t.some(n=>n.mostPasses>1),ce=t=>t*Et+Math.max(0,t-1)*ae,se=t=>t.reduce((n,o)=>n+o,0);function ie(t,n,o){let e=t.map((a,c)=>n[c]>1?ce(a):o*Math.min(1,a)),s=0,r=t.map(a=>{let c=Math.min(1,a),i=Ke*c*s;return s=Math.max(s,c),i});return{widths:e,gaps:r,band:se(e)+se(r)}}var gn=Et+ae;function Kt(t,n,o=t){let{widths:e,gaps:s,band:r}=ie(t,n,Et),a=-r/2;return e.map((c,i)=>{a+=s[i];let f=n[i]>1?Math.max(0,c-ce(o[i])):0,l=a+f/2+Et/2;return a+=c,l})}var nn=t=>ie(t,t,Et).band,en=t=>Math.min(1,Ye/(nn(t)||1)),is=t=>en(t.map(n=>n.mostPasses))<1?`${oe}, thinned to fit`:oe;function Zt(t,n){let o=t.stepOf[n],e=n-t.starts[o];return t.forward[o]?e:t.starts[o+1]-t.starts[o]-1-e}var Nt=(t,n)=>{let o=n.x-t.x,e=n.y-t.y;return Math.sqrt(o*o+e*e)};function Ft(t){let n=new Float64Array(t.length);for(let o=1;o<t.length;o++)n[o]=n[o-1]+Nt(t[o-1],t[o]);return n}function yn(t,n){let o=new Set;return t.map(e=>{let s=new Map;return e.map(r=>r.map(a=>{let c=s.get(a)??0;s.set(a,c+1);let i=n[a],f=!!i?.length&&!o.has(a);return f&&o.add(a),{id:a,visit:c,owned:f,segments:i}}))})}function qe(t,n,o){let e=[];return t.forEach((s,r)=>{let a=0;for(let M of s)for(let{segments:A}of M)a+=A?.length??0;let c=new Float64Array(a),i=new Float64Array(a),f=0,l=0,h=u();function u(){return{walk:r,ids:[],visits:[],forward:[],owned:[],starts:[0]}}let m=()=>{if(h.ids.length){let M=new Int32Array(f-l);for(let A=0;A<h.ids.length;A++)M.fill(A,h.starts[A],h.starts[A+1]);e.push({...h,xs:c.subarray(l,f),ys:i.subarray(l,f),stepOf:M})}h=u(),l=f},w=(M,A,R)=>{let P=R.x-M,k=R.y*n-A;return Math.sqrt(P*P+k*k)};for(let M of s)M.forEach(({id:A,visit:R,owned:P,segments:k},W)=>{if(!k?.length){m();return}let F=k[0],S=k.at(-1),_;if(f>l){let g=c[f-1],E=i[f-1],x=w(g,E,F),C=w(g,E,S);_=x<=C,Math.min(x,C)>o&&m()}else{let g=M[W+1]?.segments,E=x=>g?.length?Math.min(w(x.x,x.y*n,g[0]),w(x.x,x.y*n,g.at(-1))):0;_=E(S)<=E(F)}h.ids.push(A),h.visits.push(R),h.forward.push(_),h.owned.push(P);for(let g=0;g<k.length;g++){let E=k[_?g:k.length-1-g];c[f]=E.x,i[f]=E.y*n,f++}h.starts.push(f-l)}),m()}),e}function xn(t,n,o){let e=[];for(let s=0;s<n.length;s++){if(!n[s])continue;let r=s;for(;r+1<n.length&&n[r+1];)r++;let a=e.at(-1),c=a?a[1]:0,i=s;for(;i>c&&t[s]-t[i-1]<=o;)i--;let f=r;for(;f+1<t.length&&t[f+1]-t[r]<=o;)f++;a&&i<=a[1]+1?a[1]=f:e.push([i,f]),s=r}return e}function Ve(t,n){let o=Ft(t),e=o.at(-1),s=(c,i)=>{let f=t[i],l=t[Math.min(i+1,t.length-1)],h=o[Math.min(i+1,t.length-1)]-o[i],u=h>0?(c-o[i])/h:0;return{x:f.x+(l.x-f.x)*u,y:f.y+(l.y-f.y)*u}},r=0,a=0;return t.map((c,i)=>{let f=Math.max(0,o[i]-n/2),l=Math.min(e,o[i]+n/2);for(;r<t.length-1&&o[r+1]<=f;)r++;for(;a<t.length-1&&o[a+1]<=l;)a++;let h=s(f,r),u=s(l,a),m=Nt(h,u);return m>0?{nx:-(u.y-h.y)/m,ny:(u.x-h.x)/m}:void 0})}function ze(t,n,o){let e=Ft(t),s=t.slice(),r=[];e.forEach((c,i)=>{let f=r.at(-1);(f===void 0||c-e[f]>=n/4)&&r.push(i)}),r.at(-1)!==t.length-1&&r.push(t.length-1);let a=0;for(;a<r.length;){let c=r[a],i=-1;for(let u=a+1;u<r.length&&e[r[u]]-e[c]<=o;u++){let m=r[u];e[m]-e[c]>Math.PI*n&&Nt(t[c],t[m])<=n&&(i=u)}if(i<0){a++;continue}let f=r[i],l=t[c],h=t[f];for(let u=c+1;u<f;u++){let m=(e[u]-e[c])/(e[f]-e[c]);s[u]={...t[u],x:l.x+(h.x-l.x)*m,y:l.y+(h.y-l.y)*m}}a=i}return s}function le(t,n){let o=t.length,e=Ft(t),s=e[o-1],r=new Float64Array(o+1),a=new Float64Array(o+1),c=new Float64Array(o+1);for(let h=0;h<o;h++){let u=t[h],m=(e[Math.min(h+1,o-1)]-e[Math.max(h-1,0)])/2;r[h+1]=r[h]+m,a[h+1]=a[h]+m*u.x,c[h+1]=c[h]+m*u.y}let i=new Array(o),f=0,l=0;for(let h=0;h<o;h++){let u=t[h],m=Math.min(n,e[h],s-e[h]),w=e[h]-m,M=e[h]+m+1e-9*(1+s);for(;f<o&&e[f]<w;)f++;for(;l<o&&e[l]<M;)l++;let A=r[l]-r[f];i[h]=A>0?{x:(a[l]-a[f])/A,y:(c[l]-c[f])/A}:{x:u.x,y:u.y}}return i}function re(t,n){let o=t.length,e=Ft(t),s=e[o-1],r=new Uint8Array(o),a=(f,l)=>{let h=t[f],u=t[f+1];if(!u)return h;let m=e[f+1]-e[f],w=m>0?(l-e[f])/m:0;return{x:h.x+(u.x-h.x)*w,y:h.y+(u.y-h.y)*w}},c=0,i=0;for(let f=0;f<o;f++){if(e[f]<n||s-e[f]<n)continue;for(;c+1<o&&e[c+1]<=e[f]-n;)c++;for(;i+1<o&&e[i+1]<=e[f]+n;)i++;let l=t[f],h=a(c,e[f]-n),u=a(i,e[f]+n),m=Math.abs((u.x-h.x)*(l.y-h.y)-(u.y-h.y)*(l.x-h.x));r[f]=m>0&&Nt(h,u)*Nt(h,l)*Nt(l,u)/(2*m)<n?1:0}return{tight:r,s:e}}function je(t,n){let o=t.slice(),{tight:e,s}=re(o,n),r=xn(s,Array.from(e,a=>a>0),3*n);for(let a=0;a<8&&r.length;a++)r=r.filter(([c,i])=>{let f=o.slice(c,i+1),l=re(f,n);if(!l.tight.includes(1))return!1;let h=tn(l.s,l.tight,n),u=le(f,n);for(let m=0;m<f.length;m++){let w=Math.min(1,3*h[m]);if(w>0){let M=f[m],A=u[m];o[c+m]={x:M.x+(A.x-M.x)*w,y:M.y+(A.y-M.y)*w}}}return!0});return o}function Je(t,n,o,e,s,r){let a=n.length,c=new Float64Array(a),i=0,f=0,l=0,h=0,u=0;for(let m=0;m<a;m++){for(;i<a&&t[i]-t[m]<=r;){let w=o(i),M=n[i];c[i]=w&&M?w.nx*M.nx+w.ny*M.ny:0,l+=c[i],i++}for(;t[m]-t[f]>r;)l-=c[f++];if(Math.abs(l)>1e-9&&(h=l<0?-1:1),!!h)for(;u<=m;u++)s(u,h)}if(u<a){let m=0;for(let w=0;w<a;w++)m+=e(w)?1:-1;for(;u<a;u++)s(u,m<0?-1:1)}}function Qe(t,n,o,e,s=!0){let r=Math.max(o,2*e),a=Math.PI*e,c=s?a+3*e+r/2:r/2,i=new Map,f=new Map,l=[],h=[],u=w=>({normals:new Array(w),shifts:s?new Array(w):[]}),m=(w,M,A,R)=>{let P=i.get(w);P||(P=[],i.set(w,P)),(P[M]??=[])[A]=R};return t.forEach((w,M)=>{let{walk:A,ids:R,visits:P,owned:k,starts:W,xs:F,ys:S,stepOf:_}=w,g=R.length,E=F.length,x=new Array(g);for(let d=0;d<g;d++)k[d]&&(x[d]=u(W[d+1]-W[d]),f.set(R[d],{run:M,step:d,frame:x[d]}),m(R[d],A,P[d],x[d]));let C=new Float64Array(E);for(let d=1;d<E;d++){let I=F[d]-F[d-1],N=S[d]-S[d-1];C[d]=C[d-1]+Math.sqrt(I*I+N*N)}let J=C[E-1],D=new Int32Array(g).fill(-1),B=new Int32Array(g),Y=new Array(g);for(let d=0;d<g;d++){let I=k[d]?void 0:f.get(R[d]);I&&(D[d]=I.run,B[d]=I.step,Y[d]=I.frame)}let et=new Int32Array(g),ct=new Int32Array(g);for(let d=0;d+1<g;d++){let N=D[d]>=0&&D[d+1]===D[d]?B[d+1]-B[d]:0;et[d+1]=et[d]+(N===1?1:0),ct[d+1]=ct[d]+(N===-1?1:0)}let tt=new Array(g),b=0,L=0;for(let d=0;d<g;d++){if(!s){tt[d]=!k[d];continue}let I=C[W[d]]-c,N=C[W[d+1]-1]+c;for(;C[b]<I;)b++;for(;L+1<E&&C[L+1]<=N;)L++;let j=_[Math.max(0,b-1)],st=_[Math.min(E-1,L+1)],H=st-j,it=et[st]-et[j],gt=ct[st]-ct[j];tt[d]=!k[d]&&I>=0&&N<=J&&H>0&&(it===H||gt===H)}for(let d=0;d<g;d++){if(k[d])continue;let I=Y[d];x[d]=!s&&tt[d]?I:tt[d]?{normals:I.normals,shifts:I.shifts}:u(I.normals.length),m(R[d],A,P[d],x[d])}h.push(x);let q=new Array(E);for(let d=0;d<E;d++)q[d]=!tt[_[d]];for(let[d,I]of xn(C,q,c)){let N=[];for(let H=d;H<=I;H++)N.push({x:F[H],y:S[H]});let j=s?je(le(ze(N,e/2,a),e/2),e/2):N,st=Ve(j,r);Je(Ft(j),st,H=>{let it=_[d+H];return(k[it]?x[it]:Y[it])?.normals[Zt(w,d+H)]},H=>w.forward[_[d+H]],(H,it)=>{let gt=d+H,Lt=_[gt];if(tt[Lt])return;let Ht=Zt(w,gt),Rt=st[H];x[Lt].normals[Ht]=Rt&&(it>0?Rt:{nx:-Rt.nx,ny:-Rt.ny}),s&&(x[Lt].shifts[Ht]={dx:j[H].x-N[H].x,dy:(j[H].y-N[H].y)/n})},r)}if(!s){l.push(C);return}let ot=new Float64Array(E),G=0,V=0;for(let d=0;d<E;d++){let I=x[_[d]].shifts[Zt(w,d)],N=F[d]+(I?.dx??0),j=S[d]+(I?.dy??0)*n;ot[d]=d?ot[d-1]+Math.sqrt((N-G)**2+(j-V)**2):0,G=N,V=j}l.push(ot)}),{frames:i,arcs:l,stepFrames:h}}function fe(t,n,o,e){let s=new Array(n.length),r=[],a=0,c=0;for(let i=0;i<n.length;i++){for(;c<n.length&&t[c]-t[i]<=o;){for(;r.length>a&&e*n[r.at(-1)]<=e*n[c];)r.pop();r.push(c++)}for(;t[i]-t[r[a]]>o;)a++;s[i]=n[r[a]]}return s}function tn(t,n,o,e=()=>!0){let s=n.length,r=new Float64Array(s+1),a=new Float64Array(s+1);for(let l=0;l<s;l++){let h=e(n[l])?s>1?(t[Math.min(l+1,s-1)]-t[Math.max(l-1,0)])/2:1:0;r[l+1]=r[l]+h,a[l+1]=a[l]+h*n[l]}let c=new Float64Array(s),i=0,f=0;for(let l=0;l<s;l++){for(;t[l]-t[i]>o;)i++;for(;f<s&&t[f]-t[l]<=o;)f++;let h=r[f]-r[i];c[l]=h>0?(a[f]-a[i])/h:n[l]}return c}var Ze=[0];function to(t){for(let n of t.values())if(n>1)return!0;return!1}function no(t,n,o,e,s){if(!to(n))return{span:n,nodeThreads:new Map,threadPasses:new Map,threadAt:new Map,linkThreads:new Map};let r=new Map,a=[],c=[],i=[],f=[],l=[],h=[],u=[];for(let S of t){let _=[],g=[];for(let b of S){let L=r.get(b);L===void 0&&(L=a.length,r.set(b,L),a.push(b),c.push(0),i.push(0)),g.push(L);let q=o[b],ot=q?.[Math.floor(q.length/2)];_.push(ot?{x:ot.x,y:ot.y*e}:_.at(-1)??{x:0,y:0})}let E=Ft(_),x=S.map(b=>n.get(b)??1),C=fe(E,x,s/2,1),J=g.map(b=>++i[b]),D=S.length,B=new Int32Array(D),Y=-1;for(let b=0;b<D;b++)Y=x[b]===C[b]?b:Y,B[b]=Y;let et=new Int32Array(D);Y=-1;for(let b=D-1;b>=0;b--)Y=x[b]===C[b]?b:Y,et[b]=Y;let ct=new Array(D),tt=new Array(D).fill(NaN);for(let b=0;b<D;b++){let L=B[b],q=et[b],ot=L<0?q:q<0||E[b]-E[L]<=E[q]-E[b]?L:q,G=V=>Math.min(J[V],C[b])-1;if(ct[b]=G(ot),x[b]===1&&L>=0&&q>=0&&G(q)!==G(L)){let V=(E[b]-E[L])/(E[q]-E[L]||1);tt[b]=G(L)+(G(q)-G(L))*V}c[g[b]]=Math.max(c[g[b]],C[b])}f.push(g),l.push(J),h.push(ct),u.push(tt)}let m=[],w=[],M=(S,_)=>{let g=c[S],E=m[S]??=new Set;for(let x=0;x<g;x++)for(let C of[_-x,_+x])if(C>=0&&C<g&&!E.has(C))return C;return _},A=[];f.forEach((S,_)=>{S.forEach((g,E)=>{if(c[g]>1){let x=u[_][E],C=M(g,Number.isNaN(x)?h[_][E]:Math.round(x));m[g].add(C),(w[g]??=[])[l[_][E]]=C,Number.isNaN(x)||((A[g]??=[])[C]=x)}})});let R=new Map,P=new Map,k=new Map,W=new Map;a.forEach((S,_)=>{A[_]&&W.set(S,A[_]),R.set(S,c[_]),P.set(S,m[_]?[...m[_]].sort((E,x)=>E-x):Ze);let g=[];w[_]?.forEach((E,x)=>{g[E]=x-1}),k.set(S,g)});let F=new Map;return f.forEach((S,_)=>{let g=l[_];for(let E=1;E<S.length;E++){let x=S[E-1],C=S[E],J=[w[x]?.[g[E-1]]??0,w[C]?.[g[E]]??0],D=F.get(a[x]);D||(D=new Map,F.set(a[x],D));let B=D.get(a[C]);B?B.some(([Y,et])=>Y===J[0]&&et===J[1])||B.push(J):D.set(a[C],[J])}}),{span:R,nodeThreads:P,threadPasses:k,threadAt:W,linkThreads:F}}function eo(t,n,o,{reach:e,taper:s}){let r=new Map;return t.forEach((a,c)=>{let i=n[c],f=a.ids.map((l,h)=>{let u=a.starts[h+1]-a.starts[h],m=Math.floor(u/2);return i[a.starts[h]+(a.forward[h]?m:u-1-m)]});for(let[l,h]of xn(f,a.owned,e/2+s/2)){let u=f.slice(l,h+1),m=a.ids.slice(l,h+1),w=o.map(M=>{let A=m.map(R=>M.get(R)??0);return A.every(R=>R===A[0])?{slot:A,held:A}:{slot:tn(u,fe(u,A,e/2,1),s/2),held:tn(u,A,s/2,R=>R>0)}});m.forEach((M,A)=>{a.owned[l+A]&&r.set(M,{slot:w.map(R=>R.slot[A]),held:w.map(R=>R.held[A])})})}}),r}function oo(t,n,o,e,s,r,a){let c=Kt(s,s),i=new Map,f=l=>{let h=i.get(l);if(!h){let u=e.get(l);h=u?Kt(u.slot,s,u.held):c,i.set(l,h)}return h};t.forEach((l,h)=>{let{walk:u,ids:m,visits:w,starts:M}=l,{threadPasses:A,threadAt:R}=r[u],P=new Float64Array(l.xs.length);m.forEach((W,F)=>{let S=Math.max(0,A.get(W)?.indexOf(w[F])??0),_=R.get(W)?.[S]??S;P.fill(f(W)[u]+_*gn,M[F],M[F+1])});let k=tn(o[h],P,a);n[h].forEach((W,F)=>{let S=M[F],_=M[F+1],g=!0;for(let x=S+1;g&&x<_;x++)g=Math.abs(k[x]-k[S])<1e-9;if(g){W.offset=k[S];return}let E=new Array(_-S);for(let x=S;x<_;x++)E[Zt(l,x)]=k[x];W.offsets=E})})}function he(t,n,o,e,s=yn(t.map(r=>r.route),n)){let r=pn(t),a=t.map(M=>M.mostPasses),c=Ue*e,i=qe(s,o,ne*e),f=nn(a)*(r?en(a):1)*e,l=Qe(i,o,ne*e,f,r),h=r?t.map(M=>no(M.route,M.passes,n,o,c)):void 0,u=h?eo(i,l.arcs,h.map(M=>M.span),{reach:c,taper:ee*e}):void 0;u&&h&&oo(i,l.stepFrames,l.arcs,u,a,h,ee/2*e);let m={dx:0,dy:0},w=new Set;for(let M of l.frames.values())for(let{shifts:A}of M.flat())if(!w.has(A)){w.add(A);for(let R of A)m.dx=Math.max(m.dx,Math.abs(R?.dx??0)),m.dy=Math.max(m.dy,Math.abs(R?.dy??0))}return{lines:l,threads:h,spans:u,furthestShift:m}}function U(t,n,o,e){return(e<<24|o<<16|n<<8|t)>>>0}function wn(t){return t&255}function Mn(t){return t>>>8&255}function An(t){return t>>>16&255}function En(t){return t>>>24&255}function ue(t){return`rgba(${wn(t)},${Mn(t)},${An(t)},${En(t)/255})`}function fs(t,n){return`rgba(${Math.round(t[0]*255)},${Math.round(t[1]*255)},${Math.round(t[2]*255)},${n})`}function vt(t,n){return U(wn(t),Mn(t),An(t),Math.round(En(t)*n))}function hs(t,n){let o=Math.max(0,1-1/n),e=s=>Math.round(s+(255-s)*o);return U(e(wn(t)),e(Mn(t)),e(An(t)),En(t))}var de=300,Ut=.7,Yt=.5;function so(t){return`hsl(${t}, ${Ut*100}%, ${Yt*100}%)`}function qt(t){return Math.max(0,Math.min(1,t))*de}function vn(t,n){return qt((t-n.start)/(n.end-n.start))}var ro=30;function ds({start:t,bp:n,reversed:o},e){let s=vn(t,e),r=vn(t+n,e);if(r-s<1)return[(s+r)/2];let a=Math.ceil((r-s)/ro);return Array.from({length:a+1},(c,i)=>vn(t+n*(o?a-i:i)/a,e))}var ao=Array.from({length:7},(t,n)=>({offset:n/6,color:so(n/6*de)})),ms=`linear-gradient(to right, ${ao.map(t=>`${t.color} ${t.offset*100}%`).join(", ")})`;var co=$t();function me(t,n,o,e,s,r,a=!1){return co(t,[n,o.scaleX,o.scaleY,e,r,a,s],()=>{let c=new Map;for(let i=0;i<n.edges.length;i++){let f=e?.get(i),l=zn(t,n.edges[i],o,f,f&&r?.[i],a);l&&c.set(i,l)}return c})}var io=4;function lo(t){let n=new Map;for(let o of t.edges)Bt(n,o.from,o.to),Bt(n,o.to,o.from);return n}function fo({nodeId:t,nodeById:n,neighbors:o}){let e=new Set([t]),s=[t],r=1/0,a=-1/0;for(let c=0;c<io&&s.length>0;c++){let i=[];for(let f of s){let l=o.get(f);if(l){for(let h of l)if(!e.has(h)){e.add(h);let u=n.get(h);u&&Xt(u)?(r=Math.min(r,u.stable.start+u.length),a=Math.max(a,u.stable.start)):i.push(h)}}}s=i}return r===1/0?void 0:{start:Math.min(r,a),end:Math.max(r,a)}}function ho({nodeId:t,nodeById:n,neighbors:o}){let e=n.get(t);return e===void 0?void 0:Xt(e)?{start:e.stable.start,end:e.stable.start+e.length}:fo({nodeId:t,nodeById:n,neighbors:o})}function pe(t){let n=new Map(t.nodes.map(s=>[s.id,s])),o=lo(t),e=new Map;for(let s of t.nodes){let r=ho({nodeId:s.id,nodeById:n,neighbors:o});r&&e.set(s.id,(r.start+r.end)/2)}return e}var uo=U(119,119,119,217),ge=U(136,136,136,217),mo=U(24,24,28,240),ye=2.2,Te=U(160,160,160,255),Vt=.18,po=.45,Ns=ue(vt(Te,Vt)),go=11,yo=1.2,xo=1e-6,wo=7,Mo=3,Ao=3,Eo=1.5,xe=3,vo=.5,_o=.45,_n=12,bo=1e-6,pt=new Float64Array(64),_t=new Float64Array(64),bt=new Float64Array(64);function Ro(t,n,o,e){let s=t.length*_n+1;pt.length<s&&(pt=new Float64Array(s),_t=new Float64Array(s),bt=new Float64Array(s));let r=t[t.length-1];pt[0]=r.x1,_t[0]=r.y1,bt[0]=0;let a=1,c=0;for(let i=t.length-1;i>=0&&c<e;i--){let f=t[i];for(let l=1;l<=_n&&c<e;l++){let h=1-(l/_n)**2,u=1-h,m=u*u*u,w=3*u*u*h,M=3*u*h*h,A=h*h*h,R=m*f.x0+w*f.cx0+M*f.cx1+A*f.x1,P=m*f.y0+w*f.cy0+M*f.cy1+A*f.y1;c+=Math.hypot(R-pt[a-1],(P-_t[a-1])*o)*n,pt[a]=R,_t[a]=P,bt[a]=c,a++}}return a}function we(t,n){let o=1;for(;o<t-1&&bt[o]<n;)o++;let e=bt[o-1],s=bt[o],r=s>e?Math.min(1,Math.max(0,(n-e)/(s-e))):0;return{x:pt[o-1]+(pt[o]-pt[o-1])*r,y:_t[o-1]+(_t[o]-_t[o-1])*r}}function So({curves:t,edgeHalfWidth:n,nodeHalfWidth:o,scale:e,yToX:s,color:r,fromSegments:a,toSegments:c}){let i=wo+Mo*n,f=Ro(t,e,s,o+xe*i),l=bt[f-1],h=l<bo,u=Math.min(o,l),m=h?Math.min(1,Vn(a,e,e*s)/i):1;if(h?m<vo:l<xe*i)return;let w=we(f,u),M=we(f,u+i*m),A=w.x-M.x,R=(w.y-M.y)*s,P=t[t.length-1];return{x:w.x,y:w.y,angle:Math.hypot(A,R)>0?Math.atan2(R,A):Wo(P,s,Oo(P,c)),length:i*m,halfWidth:(Ao+Eo*n)*m,color:r}}var Me=[[0,0]],Co=[0],Ae={dx:0,dy:0};function Oe(t,n,o){let e=s=>Math.hypot(s.x-t.x,(s.y-t.y)*o);return e(n[0])<e(n.at(-1))}function To(t,n,o,e,s){return e?Un(t).from==="start":Oe({x:o.x0,y:o.y0},n,s)}function Oo(t,n){if(n.length<2)return;let o=n[0],e=n[n.length-1];return Math.hypot(t.x1-o.x,t.y1-o.y)<=Math.hypot(t.x1-e.x,t.y1-e.y)?{from:o,to:n[1]}:{from:e,to:n[n.length-2]}}function Ee(t,n){if(!t||!n)return;let o=n.x-t.x,e=n.y-t.y,s=Math.hypot(o,e);return s>0?{nx:-e/s,ny:o/s}:void 0}var ke=.1,ko=1/Math.sqrt(ke);function ve(t,n=1){let o=n===1?t:t.map(e=>({x:e.x,y:e.y*n}));return o.map((e,s)=>{let r=Ee(o[s-1],e),a=Ee(e,o[s+1]);if(r&&a){let c=(r.nx+a.nx)/2,i=(r.ny+a.ny)/2,f=r.nx*c+r.ny*i;return f>ke?{nx:c/f,ny:i/f}:{nx:c,ny:i}}return r??a??{nx:0,ny:0}})}function _e(t,n,o,e=1){let s=new Array(t.length);for(let r=0;r<t.length;r++){let a=typeof o=="number"?o:o[r];s[r]={x:t[r].x+n[r].nx*a,y:t[r].y+n[r].ny*a/e}}return s}function Rn(t,n,o){let e=(1-Math.abs(2*o-1))*n,s=e*(1-Math.abs(t/60%2-1)),r=o-e/2,a=0,c=0,i=0;return t<60?(a=e,c=s):t<120?(a=s,c=e):t<180?(c=e,i=s):t<240?(c=s,i=e):t<300?(a=s,i=e):(a=e,i=s),[a+r,c+r,i+r]}function on(t,n,o,e=1){let[s,r,a]=Rn(t,n,o);return U(Math.round(s*255),Math.round(r*255),Math.round(a*255),Math.round(e*255))}var Io=[[68,1,84],[59,82,139],[33,145,140],[94,201,98],[253,231,37]],Po=[[237,137,44],[158,42,122]],No=[[220,50,50],[50,120,220]];function bn(t,n){let o=Math.max(0,Math.min(1,n))*(t.length-1),e=Math.min(t.length-2,Math.floor(o)),s=o-e,r=t[e],a=t[e+1];return U(Math.round(r[0]+(a[0]-r[0])*s),Math.round(r[1]+(a[1]-r[1])*s),Math.round(r[2]+(a[2]-r[2])*s),255)}function Fo(t,n){return on(jn(t),un,dn,n)}var Ie=[60,65,72],Sn=U(...Ie,255),Fs=`rgb(${Ie.join(", ")})`;function Lo(t,n){let o=n.midpoints.get(t.id);return Xt(t)&&o!==void 0?(o-n.start)/n.span:void 0}function Ls(t,n){let o=pe(t);if(n&&n.end>n.start)return{start:n.start,span:n.end-n.start,midpoints:o};let e=1/0,s=-1/0;for(let r of o.values())e=Math.min(e,r),s=Math.max(s,r);return{start:e===1/0?0:e,span:s>e?s-e:1,midpoints:o}}function Ho(t,n){let o=1/0,e=-1/0,s=1/0,r=-1/0,a=0;for(let c of t.nodes)c.stable!==void 0&&c.stable.rank>a&&(a=c.stable.rank),c.depth<o&&(o=c.depth),c.depth>e&&(e=c.depth),c.length<s&&(s=c.length),c.length>r&&(r=c.length);return{minDepth:o,maxDepth:e,minLength:s,maxLength:r,maxRank:a,nodeCount:t.nodes.length,referenceRamp:n}}function Do(t,n,o,e){switch(o){case"random":return Fo(t.id,1);case"depth":return bn(Io,e.maxDepth>e.minDepth?(t.depth-e.minDepth)/(e.maxDepth-e.minDepth):.5);case"node-length":return bn(No,e.maxLength>e.minLength?(t.length-e.minLength)/(e.maxLength-e.minLength):.5);case"stable-rank":return t.stable===void 0?U(160,160,160,255):t.stable.rank===0?U(52,152,219,255):bn(Po,e.maxRank>1?(t.stable.rank-1)/(e.maxRank-1):0);case"reference-position":{let s=e.referenceRamp;if(s===void 0)return U(160,160,160,255);let r=Lo(t,s);return r===void 0?Sn:on(qt(r),Ut,Yt)}case"grey":return U(160,160,160,255);case"rainbow":{let s=e.nodeCount>1?n/e.nodeCount*360:0;return on(s,.75,.5)}default:return U(52,152,219,255)}}function Wo(t,n=1,o){let e=[[t.cx1,t.cy1],[t.cx0,t.cy0],[t.x0,t.y0]];for(let[s,r]of e){let a=t.x1-s,c=(t.y1-r)*n;if(Math.hypot(a,c)>0)return Math.atan2(c,a)}return o?Math.atan2((o.to.y-o.from.y)*n,o.to.x-o.from.x):0}function Go(t,n){let o=!1;for(let e=0;e<t.length-1&&!o;e++){let s=t[e],r=t[e+1];o=Math.max(s.x,r.x)>=n.minX&&Math.min(s.x,r.x)<=n.maxX&&Math.max(s.y,r.y)>=n.minY&&Math.min(s.y,r.y)<=n.maxY}return o}function be(t,n,o=0,e=0){for(let s of t){let r=Math.min(s.x0,s.cx0,s.cx1,s.x1),a=Math.max(s.x0,s.cx0,s.cx1,s.x1),c=Math.min(s.y0,s.cy0,s.cy1,s.y1),i=Math.max(s.y0,s.cy0,s.cy1,s.y1);if(a>=n.minX-o&&r<=n.maxX+o&&i>=n.minY-e&&c<=n.maxY+e)return!0}return!1}var Re=new WeakMap;function Bo(t){let n=Re.get(t);if(!n){let o=[],e=new Map,s=t.paths??[];for(let r=0;r<s.length;r++)o.push(on(Jn(r,s.length),un,dn,.85)),e.has(s[r].name)||e.set(s[r].name,r);n={pathColorByIndex:o,pathIndexByName:e},Re.set(t,n)}return n}var Se=new WeakMap,Xo=new Map;function $o(t){let n=Se.get(t);if(!n){n=new Map;for(let[o,e]of(t.paths??[]).entries())for(let s of new Set(e.nodeIds))Bt(n,s,o);Se.set(t,n)}return n}var Ko=$t(),Uo=$t(),Ce=new WeakMap;function Yo(t){let n=Ce.get(t);if(!n){n=new Map;for(let{from:o,to:e}of t.edges){let s=n.get(o);s||(s=new Set,n.set(o,s)),s.add(e)}Ce.set(t,n)}return n}function Hs(t){let{nodePositions:n,graph:o,nodeById:e,colorScheme:s,contigThickness:r,connectorThickness:a,drawPaths:c,nodeWidth:i="uniform",edgeWidth:f="uniform",highlight:l,axis:h,linearLayout:u,viewportBounds:m,referenceRamp:w,deletions:M,deletionRoutes:A,stranded:R,hiddenEdges:P,version:k=0}=t,W=Qn(o,i),F=f==="walks"?Zn(o):0,S=h.scaleX,_=1/Math.max(S,xo),g=Yn(h),E=me(n,o,h,M,k,A,R),x=[],C=new Map,J=[],D=new Map,B=[],Y=new Map,et=Ho(o,w),ct=new Map;if(s==="rainbow")for(let p=0;p<o.nodes.length;p++)ct.set(o.nodes[p].id,p);let tt=o.paths?.length??0,{pathColorByIndex:b,pathIndexByName:L}=Bo(o),q=p=>b[L.get(p)??-1]??ge,ot=c&&tt>1?$o(o):Xo,G=l?.walks??[],V=pn(G),d=G.map(p=>p.mostPasses),I=V?en(d):1,N=l&&G.length>1?Ko(l,[n,k,h.scaleX,h.scaleY],()=>he(G,n,g,_,Uo(l,[n,k],()=>yn(G.map(p=>p.route),n)))):void 0,j=N?.lines,st=N?.threads,H=N?.spans,it=V?Kt(d,d):[],gt=new Map,Lt=p=>{let y=gt.get(p);if(!y){let v=H?.get(p);y=v?Kt(v.slot,d,v.held):it,gt.set(p,y)}return y},Ht=(p,y,v,T)=>V?(Lt(p)[v]+T*gn)*I:(v-(G.length-1)/2)*y,Rt=(p,y,v)=>{let T=p?.offsets?.[y]??p?.offset;return T===void 0?v:T*I},Pn=p=>V?Et/2*I:p/2,Nn=new Map,Fn=new WeakMap,Ln=(p,y,v)=>st?.[p]?.threadPasses.get(y)?.[v]??0,rn=(p,y)=>{let v=Nn.get(p);return v||(v=ve(y,g),Nn.set(p,v)),v},We=(p,y,v)=>{if(!v)return rn(p,y);let T=Fn.get(v.normals);return T||(T=rn(p,y).map((O,X)=>v.normals[X]??O),Fn.set(v.normals,T)),T},Hn=new Map,an=p=>{let y=Hn.get(p);if(y===void 0){let v=e.get(p);y=mn(v?Qt(v,r,i,W):r,G.length),Hn.set(p,y)}return y},Dn=(p,y,v,T,O,X)=>{let Q=T?0:v.length-1,z=y?.[O]?.[Ln(O,p,X)],rt=z?.offsets?.[Q]??z?.offset;return{normal:z?.normals[Q]??rn(p,v)[Q]??{nx:0,ny:0},shift:z?.shifts[Q]??Ae,offset:rt===void 0?Ht(p,an(p),O,X):rt*I}},Ge=(p,y)=>{if(!m)return!0;let v=V?nn(d)*I:(G.length-1)/2*an(y),T=ko*v*_;return be(p,m,T+(N?.furthestShift.dx??0),T/g+(N?.furthestShift.dy??0))},Be=(p,y,v)=>{let T=st?.[p]?.linkThreads;if(!T?.size)return Me;let O=T.get(y)?.get(v),X=Yo(o).get(v)?.has(y)?void 0:T.get(v)?.get(y);if(!X)return O??Me;let Q=X.map(([z,rt])=>[rt,z]);return O?[...O,...Q]:Q},cn=(p,y,v)=>G[p]?.passColors.get(y)?.[st?.[p]?.threadPasses.get(y)?.[v]??0],Wn=new WeakMap,Xe=(p,y)=>{if(!y||!V)return p;let v=Wn.get(y.shifts);if(!v){let{shifts:T}=y;v=p.map((O,X)=>{let{dx:Q,dy:z}=T[X]??Ae;return{...O,x:O.x+Q,y:O.y+z}}),Wn.set(y.shifts,v)}return v},$e=S>(u?1:_o);for(let p=0;p<o.edges.length;p++){let y=o.edges[p],v=n[y.from],T=n[y.to],O=E.get(p);if(!v?.length||!T?.length||!O||P?.has(p))continue;let X=y.pathIds?.length??0,z=M?.get(p)!==void 0,rt=l?.edgeIndexes.has(p)??!1,Dt=a/2*(z?ye:1),St=te(X,F,f),Ct=a/2*(z?f==="walks"&&F>0?Math.max(1,St):ye:St),lt=c&&X>0,Tt=z?mo:uo,yt=!l||rt?Tt:vt(Tt,Vt),ut=e.get(y.to),Wt=(ut?Qt(ut,r,i,W):r)/2,$=K=>!m||be(K,m),zt=K=>$n(K,go/S,g,m),jt=(K,Z,nt)=>{if(!z){B.push({curves:K,thickness:Z,color:nt});return}for(let mt of zt(K))B.push({curves:mt.curves,thickness:Z,color:nt})},xt=(K,Z,nt,mt,kt,Mt,It,at,Gn)=>{B.push({curves:K,thickness:Z,color:nt,walk:mt,pass:kt,normal:Mt,offsetX:It,endNormal:at,endOffsetX:Gn})},Ot=K=>{let Z=$e?So({curves:K,edgeHalfWidth:z||lt?a/2:Ct,nodeHalfWidth:Wt,scale:S,yToX:g,color:yt,fromSegments:v,toSegments:T}):void 0;Z&&J.push(Z)},dt=B.length,Gt=J.length,wt=l?.walks.length&&rt&&!lt?l.walks:void 0;if(wt&&!Ge(O,y.from))continue;if(wt){let K=To(y,v,O[0],R,g),Z=O.at(-1),nt=Oe({x:Z.x1,y:Z.y1},T,g),mt=wt.length===1,kt=Pn(an(y.from)),Mt=j?.frames.get(y.from),It=j?.frames.get(y.to);for(let at=0;at<wt.length;at++)if(wt[at].edgeIndexes.has(p))for(let[ln,Bn]of Be(at,y.from,y.to)){let ht=Dn(y.from,Mt,v,K,at,ln),Pt=V?Dn(y.to,It,T,nt,at,Bn):ht,At=mt?0:ht.offset*_,fn=V?Pt.offset*_:At,Xn=V?Kn(O,ht.shift.dx+ht.normal.nx*At,ht.shift.dy+ht.normal.ny*At/g,Pt.shift.dx+Pt.normal.nx*fn,Pt.shift.dy+Pt.normal.ny*fn/g):At===0?O:hn(O,ht.normal.nx*At,ht.normal.ny*At/g);$(Xn)&&xt(Xn,kt,cn(at,y.from,ln)??cn(at,y.to,Bn)??Tt,at,ln,ht.normal,At,Pt.normal,fn)}B.length>dt&&Ot(O)}else if(!lt)$(O)&&(jt(O,Ct,yt),Ot(O));else{let K=qn(v,T,X,h),Z=Math.floor((X-1)/2);for(let nt=0;nt<X;nt++){let{x:mt,y:kt}=K[nt],Mt=mt===0&&kt===0?O:hn(O,mt,kt);if(!$(Mt))continue;let It=q(y.pathIds[nt]);jt(Mt,Dt,l&&(l.walks.length?!l.names.has(y.pathIds[nt]):!rt)?vt(It,Vt):It),nt===Z&&Ot(Mt)}}let Jt=B.length-dt;Jt>0&&Y.set(p,{start:dt,count:Jt});let ft=J.length-Gt;ft>0&&D.set(p,{start:Gt,count:ft})}for(let[p,y]of Object.entries(n)){let v=e.get(p);if(!v||m&&!Go(y,m))continue;let T=l!==void 0&&!l.nodeIds.has(p),O=T?Te:Do(v,ct.get(p)??0,s,et),X=T?vt(O,Vt):v.moved?vt(O,po):O,Q=Qt(v,r,i,W),z=Q/2,rt=x.length,Dt=ot.get(p),St=Q/tt,Ct=y.length>=2,lt=l?.walks.length&&!T&&!Dt?.length?l.walks:void 0;if(Ct&&lt){let yt=mn(Q,lt.length),ut=Pn(yt),Wt=j?.frames.get(p);for(let $=0;$<lt.length;$++){let zt=lt[$].colors.get(p);if(zt===void 0)continue;let jt=st?.[$]?.nodeThreads.get(p)??Co;for(let xt of jt){let Ot=cn($,p,xt)??zt;if(lt.length===1){x.push({points:y,thickness:ut,color:Ot,walk:$,pass:xt});continue}let dt=Wt?.[$]?.[Ln($,p,xt)],Gt=We(p,y,dt),wt=Xe(y,dt),Jt=Ht(p,yt,$,xt),ft=dt?.offsets?.map(Z=>Z*I*_),K=ft?ft[Math.floor(ft.length/2)]:Rt(dt,0,Jt)*_;x.push({points:_e(wt,Gt,ft??K,g),thickness:ut,color:Ot,walk:$,pass:xt,normals:Gt,offsetX:K,...ft&&{offsets:ft}})}}}else if(Ct&&Dt?.length&&St>=yo){let yt=ve(y,g);for(let ut of Dt){let Wt=(ut-(tt-1)/2)*St*_,$=b[ut]??ge;x.push({points:_e(y,yt,Wt,g),thickness:St/2,color:T?vt($,Vt):$})}}else Ct&&x.push({points:y,thickness:z,color:X});let Tt=x.length-rt;Tt>0&&C.set(p,{start:rt,count:Tt})}return{nodeStrokes:x,nodeStrokeRuns:C,arrows:J,arrowRuns:D,edgeCurves:B,edgeCurveRuns:Y}}var Fe=[{value:"progress",label:"Progress along the walk"},{value:"walk",label:"One colour for the walk"},{value:"reference",label:"Reference position"}],On=[{value:"grey",label:"Grey to black",ends:["#a3a3a3","#151515"]},{value:"blue",label:"Cyan to navy",ends:["#6ee0f0","#0b2c7a"]},{value:"red",label:"Yellow to red",ends:["#ffd24a","#b3121b"]},{value:"purple",label:"Pink to plum",ends:["#f5a3d8","#5e1a6e"]},{value:"green",label:"Lime to forest",ends:["#b6e36c","#0b5d3b"]},{value:"orange",label:"Peach to rust",ends:["#ffc285","#8f3a00"]},{value:"rainbow",label:"Rainbow"}],Cn=["blue","red","purple","green"],qo=t=>Fe.some(n=>n.value===t),Vo=t=>On.some(n=>n.value===t);function zo(t,n,o,e=!0){let{field:s,scheme:r}=t.color??{},a=qo(s)?s:e?"progress":"walk",c=n?"grey":Cn[o%Cn.length],i=Vo(r)?r==="rainbow"&&a!=="reference"?c:r:c,f=Math.floor(o/Cn.length)%Pe.length;return a==="walk"&&i===c&&f>0?{field:a,scheme:i,shade:Pe[f]}:e||a==="walk"?{field:a,scheme:i}:{field:a,scheme:i,darkest:jo}}var jo=.55,kn=.5,Pe=[kn,.85,.2],Jo=.08,Ne=({field:t,scheme:n})=>t!=="walk"&&n!=="rainbow";function Qo(t){let n=new Map;for(let e of t)Ne(e)&&n.set(e.scheme,(n.get(e.scheme)??0)+1);let o=new Map;return t.map(e=>{let s=Ne(e)?n.get(e.scheme):1;if(s<2)return e;let r=o.get(e.scheme)??0;o.set(e.scheme,r+1);let a=Jo/2;return{...e,stretch:[r/s+(r>0?a:0),(r+1)/s-(r<s-1?a:0)]}})}var Le=({stretch:t},n)=>t?t[0]+(t[1]-t[0])*n:n,Zo=t=>t<=.04045?t/12.92:((t+.055)/1.055)**2.4,ts=t=>t<=.0031308?t*12.92:1.055*t**(1/2.4)-.055;function ns(t){let[n,o,e]=[1,3,5].map(c=>Zo(Number.parseInt(t.slice(c,c+2),16)/255)),s=Math.cbrt(.4122214708*n+.5363325363*o+.0514459929*e),r=Math.cbrt(.2119034982*n+.6806995451*o+.1073969566*e),a=Math.cbrt(.0883024619*n+.2817188376*o+.6299787005*e);return[.2104542553*s+.793617785*r-.0040720468*a,1.9779984951*s-2.428592205*r+.4505937099*a,.0259040371*s+.7827717662*r-.808675766*a]}function es([t,n,o]){let e=(t+.3963377774*n+.2158037573*o)**3,s=(t-.1055613458*n-.0638541728*o)**3,r=(t-.0894841775*n-1.291485548*o)**3;return[4.0767416621*e-3.3077115913*s+.2309699292*r,-1.2684380046*e+2.6097574011*s-.3413193965*r,-.0041960863*e-.7034186147*s+1.707614701*r].map(a=>ts(Math.max(0,Math.min(1,a)))*255)}var Tn=new Map;function os(t){if(!Tn.has(t)){let n=On.find(o=>o.value===t);Tn.set(t,n&&"ends"in n?n.ends.map(ns):void 0)}return Tn.get(t)}function In(t,n,o=0){let e=Math.max(0,Math.min(1,n)),s=os(t);if(!s)return Rn(qt(e),Ut,Yt).map(l=>l*255);let[r,a]=s,c=r[0],i=a[0],f=i<o&&c>o?(c-o)/(c-i):1;return es(r.map((l,h)=>l+(a[h]-l)*e*f))}function He(t,n,o){let[e,s,r]=In(t,n,o).map(Math.round);return`rgb(${e}, ${s}, ${r})`}function sn(t,n,o){let[e,s,r]=In(t,n,o).map(Math.round);return U(e,s,r,255)}function ss(t,n){let{field:o,scheme:e,darkest:s,shade:r=kn}=t;return o==="walk"?sn(e,r):n===void 0?De:sn(e,Le(t,n),s)}var De=Sn;function rs(t){let{field:n,scheme:o,darkest:e,shade:s=kn}=t,r=(a,c)=>({offset:a,color:He(o,c,e),abgr:sn(o,c,e)});return n==="walk"?[r(0,s)]:Array.from({length:7},(a,c)=>r(c/6,Le(t,c/6)))}export{lo as a,ho as b,Et as c,pn as d,is as e,U as f,ue as g,fs as h,vt as i,hs as j,so as k,ds as l,ao as m,ms as n,me as o,Ns as p,Rn as q,Fs as r,Lo as s,Ls as t,Ho as u,Do as v,Hs as w,Fe as x,On as y,zo as z,Qo as A,ss as B,De as C,rs as D};
+//# sourceMappingURL=chunk-YS3R3J2I.js.map