jbrowse-plugin-graphgenomeviewer 7.7.0 → 8.0.0

package/dist/chunks/{chunk-NDRLCGPC.js.map → chunk-3WG3GF2A.js.map}

@@ -1,7 +1,7 @@
 {
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read(\"getRunningActionContext\")\nexport const getSnapshot = /* @__PURE__ */ read(\"getSnapshot\")\nexport const getType = /* @__PURE__ */ read(\"getType\")\nexport const getUnionSubtypes = /* @__PURE__ */ read(\"getUnionSubtypes\")\nexport const getWrappedType = /* @__PURE__ */ read(\"getWrappedType\")\nexport const hasParent = /* @__PURE__ */ read(\"hasParent\")\nexport const hasParentOfType = /* @__PURE__ */ read(\"hasParentOfType\")\nexport const isActionContextChildOf = /* @__PURE__ */ read(\"isActionContextChildOf\")\nexport const isActionContextThisOrChildOf = /* @__PURE__ */ read(\"isActionContextThisOrChildOf\")\nexport const isAlive = /* @__PURE__ */ read(\"isAlive\")\nexport const isArrayType = /* @__PURE__ */ read(\"isArrayType\")\nexport const isFrozenType = /* @__PURE__ */ read(\"isFrozenType\")\nexport const isIdentifierType = /* @__PURE__ */ read(\"isIdentifierType\")\nexport const isLateType = /* @__PURE__ */ read(\"isLateType\")\nexport const isLiteralType = /* 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onPatch = /* @__PURE__ */ read(\"onPatch\")\nexport const onSnapshot = /* @__PURE__ */ read(\"onSnapshot\")\nexport const protect = /* @__PURE__ */ read(\"protect\")\nexport const recordActions = /* @__PURE__ */ read(\"recordActions\")\nexport const recordPatches = /* @__PURE__ */ read(\"recordPatches\")\nexport const resolveIdentifier = /* @__PURE__ */ read(\"resolveIdentifier\")\nexport const resolvePath = /* @__PURE__ */ read(\"resolvePath\")\nexport const setDevMode = /* @__PURE__ */ read(\"setDevMode\")\nexport const setLivelinessChecking = /* @__PURE__ */ read(\"setLivelinessChecking\")\nexport const setLivelynessChecking = /* @__PURE__ */ read(\"setLivelynessChecking\")\nexport const setTypeChecking = /* @__PURE__ */ read(\"setTypeChecking\")\nexport const splitJsonPath = /* @__PURE__ */ read(\"splitJsonPath\")\nexport const t = /* @__PURE__ */ read(\"t\")\nexport const toGenerator = /* @__PURE__ */ read(\"toGenerator\")\nexport const toGeneratorFunction = /* @__PURE__ */ read(\"toGeneratorFunction\")\nexport const tryReference = /* @__PURE__ */ read(\"tryReference\")\nexport const tryResolve = /* @__PURE__ */ read(\"tryResolve\")\nexport const typecheck = /* @__PURE__ */ read(\"typecheck\")\nexport const types = /* @__PURE__ */ read(\"types\")\nexport const unescapeJsonPath = /* @__PURE__ */ read(\"unescapeJsonPath\")\nexport const unprotect = /* @__PURE__ */ read(\"unprotect\")\nexport const unwrapType = /* @__PURE__ */ read(\"unwrapType\")\nexport const walk = /* @__PURE__ */ read(\"walk\")\nexport default host && host.__esModule ? host.default : host"],
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+  "sourcesContent": ["const host = JBrowseExports[\"mobx-state-tree\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"mobx-state-tree\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport const addDisposer = /* @__PURE__ */ read(\"addDisposer\")\nexport const addMiddleware = /* @__PURE__ */ read(\"addMiddleware\")\nexport const applyAction = /* @__PURE__ */ read(\"applyAction\")\nexport const applyPatch = /* @__PURE__ */ read(\"applyPatch\")\nexport const applySnapshot = /* @__PURE__ */ read(\"applySnapshot\")\nexport const asArrayType = /* @__PURE__ */ read(\"asArrayType\")\nexport const asMapType = /* @__PURE__ */ read(\"asMapType\")\nexport const asModelType = /* 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const findParent = /* @__PURE__ */ read(\"findParent\")\nexport const flow = /* @__PURE__ */ read(\"flow\")\nexport const getChildType = /* @__PURE__ */ read(\"getChildType\")\nexport const getEnv = /* @__PURE__ */ read(\"getEnv\")\nexport const getIdentifier = /* @__PURE__ */ read(\"getIdentifier\")\nexport const getLivelinessChecking = /* @__PURE__ */ read(\"getLivelinessChecking\")\nexport const getMembers = /* @__PURE__ */ read(\"getMembers\")\nexport const getNodeId = /* @__PURE__ */ read(\"getNodeId\")\nexport const getParent = /* @__PURE__ */ read(\"getParent\")\nexport const getParentOfType = /* @__PURE__ */ read(\"getParentOfType\")\nexport const getPath = /* @__PURE__ */ read(\"getPath\")\nexport const getPathParts = /* @__PURE__ */ read(\"getPathParts\")\nexport const getPropertyMembers = /* @__PURE__ */ read(\"getPropertyMembers\")\nexport const getRelativePath = /* @__PURE__ */ read(\"getRelativePath\")\nexport const getRoot = /* @__PURE__ */ read(\"getRoot\")\nexport 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const toGeneratorFunction = /* @__PURE__ */ read(\"toGeneratorFunction\")\nexport const tryReference = /* @__PURE__ */ read(\"tryReference\")\nexport const tryResolve = /* @__PURE__ */ read(\"tryResolve\")\nexport const typecheck = /* @__PURE__ */ read(\"typecheck\")\nexport const types = /* @__PURE__ */ read(\"types\")\nexport const unescapeJsonPath = /* @__PURE__ */ read(\"unescapeJsonPath\")\nexport const unprotect = /* @__PURE__ */ read(\"unprotect\")\nexport const unwrapType = /* @__PURE__ */ read(\"unwrapType\")\nexport const walk = /* @__PURE__ */ read(\"walk\")\nexport default host && host.__esModule ? host.default : host"],
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+  "names": ["host", "read", "name", "addDisposer", "flow", "read", "getEnv", "read", "getRoot", "read", "isAlive", "read", "types", "read", "mobx_state_tree_default", "host"]
 }

package/dist/chunks/{chunk-LIRBZOBX.js → chunk-56YYNIV3.js}

@@ -1,2 +1,2 @@
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package/dist/chunks/{chunk-LIRBZOBX.js.map → chunk-56YYNIV3.js.map}

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A walk in pieces lists its pieces in path order, so replaying\n  // the pieces in order reads each step's own visit.\n  replay() {\n    const cursor = /* @__PURE__ */ new Map();\n    return (slot, p) => {\n      if (slot < 0 || p < 0) {\n        return -1;\n      }\n      const key = slot * this.paths.length + p;\n      const end = this.offsets[slot + 1];\n      let at = cursor.get(key) ?? this.offsets[slot];\n      while (at < end && this.path[at] !== p) {\n        at++;\n      }\n      cursor.set(key, at + 1);\n      return at < end ? at : -1;\n    };\n  }\n  // the visits of paths `keepPath` accepts, at segments `keepSegment` does\n  filter(keepPath, keepSegment = () => true) {\n    const kept = this.paths.map(keepPath);\n    const builder = new PathVisitsBuilder();\n    this.segments.forEach((segment, s) => {\n      if (!keepSegment(segment)) {\n        return;\n      }\n      const slot = builder.declare(segment);\n      for (let i = this.offsets[s]; i < this.offsets[s + 1]; i++) {\n        const p = this.path[i];\n        if (kept[p]) {\n          builder.addAt(\n            slot,\n            builder.pathOf(this.paths[p], this.samples[p]),\n            this.start[i],\n            this.reversed[i] === 1\n          );\n        }\n      }\n    });\n    return builder.build();\n  }\n  strand(i) {\n    return this.reversed[i] ? \"-\" : \"+\";\n  }\n  visit(i) {\n    const p = this.path[i];\n    return {\n      path: this.paths[p],\n      sample: this.samples[p],\n      start: this.start[i],\n      strand: this.strand(i)\n    };\n  }\n  visitsAt(slot) {\n    const out = [];\n    for (let i = this.offsets[slot]; i < this.offsets[slot + 1]; i++) {\n      out.push(this.visit(i));\n    }\n    return out;\n  }\n  get(segment) {\n    const slot = this.slot(segment);\n    return slot < 0 ? void 0 : this.visitsAt(slot);\n  }\n  has(segment) {\n    return this.slots.has(segment);\n  }\n  keys() {\n    return this.segments[Symbol.iterator]();\n  }\n  *values() {\n    for (let s = 0; s < this.segments.length; s++) {\n      yield this.visitsAt(s);\n    }\n  }\n  *entries() {\n    for (let s = 0; s < this.segments.length; s++) {\n      yield [this.segments[s], this.visitsAt(s)];\n    }\n  }\n  [Symbol.iterator]() {\n    return this.entries();\n  }\n};\nvar Column = class {\n  constructor(data) {\n    this.data = data;\n    this.length = 0;\n  }\n  push(value) {\n    if (this.length === this.data.length) {\n      const grown = new this.data.constructor(\n        this.data.length * 2\n      );\n      grown.set(this.data);\n      this.data = grown;\n    }\n    this.data[this.length++] = value;\n  }\n};\nvar PathVisitsBuilder = class {\n  constructor() {\n    this.segments = [];\n    this.slots = /* @__PURE__ */ new Map();\n    this.paths = [];\n    this.samples = [];\n    this.pathIndex = /* @__PURE__ */ new Map();\n    this.slot = new Column(new Int32Array(1024));\n    this.path = new Column(new Int32Array(1024));\n    this.start = new Column(new Float64Array(1024));\n    this.reversed = new Column(new Uint8Array(1024));\n  }\n  // a segment's place in iteration order, though it has no visits yet\n  declare(segment) {\n    let s = this.slots.get(segment);\n    if (s === void 0) {\n      s = this.segments.length;\n      this.slots.set(segment, s);\n      this.segments.push(segment);\n    }\n    return s;\n  }\n  // a path's index, so a caller adding many of its visits names it once\n  pathOf(path, sample) {\n    let p = this.pathIndex.get(path);\n    if (p === void 0) {\n      p = this.paths.length;\n      this.pathIndex.set(path, p);\n      this.paths.push(path);\n      this.samples.push(sample);\n    }\n    return p;\n  }\n  add(segment, path, sample, start, reversed) {\n    this.addAt(\n      this.declare(segment),\n      this.pathOf(path, sample),\n      start,\n      reversed\n    );\n  }\n  addAt(slot, path, start, reversed) {\n    this.slot.push(slot);\n    this.path.push(path);\n    this.start.push(start);\n    this.reversed.push(reversed ? 1 : 0);\n  }\n  build() {\n    const n = this.slot.length;\n    const segments = this.segments.length;\n    const offsets = new Int32Array(segments + 1);\n    const slot = this.slot.data;\n    for (let i = 0; i < n; i++) {\n      offsets[slot[i] + 1]++;\n    }\n    for (let s = 0; s < segments; s++) {\n      offsets[s + 1] += offsets[s];\n    }\n    const fill = offsets.slice(0, segments);\n    const path = new Int32Array(n);\n    const start = new Float64Array(n);\n    const reversed = new Uint8Array(n);\n    for (let i = 0; i < n; i++) {\n      const at = fill[slot[i]]++;\n      path[at] = this.path.data[i];\n      start[at] = this.start.data[i];\n      reversed[at] = this.reversed.data[i];\n    }\n    return new PathVisits({\n      segments: this.segments,\n      offsets,\n      path,\n      start,\n      reversed,\n      paths: this.paths,\n      samples: this.samples\n    });\n  }\n};\n\nexport {\n  PathVisits,\n  Column,\n  PathVisitsBuilder\n};\n", "import {\n  PathVisitsBuilder\n} from \"./chunk-ZPZ7GNBT.js\";\nimport {\n  groupBy\n} from \"./chunk-BSOZW3FC.js\";\nimport {\n  REFERENCE_RANK\n} from \"./chunk-RJWPJCIB.js\";\nimport {\n  panSNSample\n} from \"./chunk-2JL2JVZ2.js\";\n\n// src/pathAnchoring.ts\nvar RANGE_SUFFIX = /:(\\d+)-\\d+$/;\nvar VG_FRAGMENT = /^([^#]*#[^#]*#[^#[]*)#(\\d+)(?:\\[(\\d+)-\\d+\\])?$/;\nvar VG_SUBRANGE = /\\[(\\d+)-\\d+\\]$/;\nfunction pathOrigin(pathName) {\n  const fragment = VG_FRAGMENT.exec(pathName);\n  if (fragment) {\n    return { name: fragment[1], start: +fragment[2] + +(fragment[3] ?? 0) };\n  }\n  const match = RANGE_SUFFIX.exec(pathName) ?? VG_SUBRANGE.exec(pathName);\n  return match ? { name: pathName.slice(0, match.index), start: +match[1] } : { name: pathName, start: 0 };\n}\nfunction surveyPaths(paths, lengthOf) {\n  const anchorPaths = [];\n  const visits = new PathVisitsBuilder();\n  for (const path of paths) {\n    const sample = panSNSample(path.name);\n    const p = visits.pathOf(path.name, sample);\n    let pos = path.start;\n    for (const step of path.steps) {\n      visits.addAt(visits.declare(step.id), p, pos, step.strand === \"-\");\n      pos += lengthOf(step.id);\n    }\n    anchorPaths.push({\n      name: path.name,\n      sample,\n      start: path.start,\n      length: pos - path.start\n    });\n  }\n  return { anchorPaths, pathVisits: visits.build() };\n}\nfunction chooseReferencePath(anchorPaths, preferred) {\n  const named = anchorPaths.find(\n    (p) => p.sample === preferred || p.name === preferred\n  );\n  return named ?? anchorPaths[0];\n}\nvar OFF_REFERENCE_RANK = 1;\nfunction anchorNode(node, visits, reference, samplesOf) {\n  const slot = visits.slot(node.name);\n  if (slot < 0 || visits.offsets[slot] === visits.offsets[slot + 1]) {\n    return node;\n  }\n  const own = visits.firstBy(slot, reference);\n  const anchor = own >= 0 ? own : visits.offsets[slot];\n  return {\n    ...node,\n    stable: {\n      refName: visits.paths[visits.path[anchor]],\n      start: visits.start[anchor],\n      rank: own >= 0 ? REFERENCE_RANK : OFF_REFERENCE_RANK,\n      strand: visits.strand(anchor)\n    },\n    samples: samplesOf(slot)\n  };\n}\nfunction sampleSorter(visits) {\n  const sorted = [...new Set(visits.samples)].sort();\n  const rank = new Map(sorted.map((sample, i) => [sample, i]));\n  const pathRank = Int32Array.from(visits.samples, (s) => rank.get(s));\n  const seen = new Uint8Array(sorted.length);\n  const ranks = new Int32Array(sorted.length);\n  return (slot) => {\n    let n = 0;\n    for (let i = visits.offsets[slot]; i < visits.offsets[slot + 1]; i++) {\n      const r = pathRank[visits.path[i]];\n      if (seen[r] === 0) {\n        seen[r] = 1;\n        ranks[n++] = r;\n      }\n    }\n    let out;\n    if (n === sorted.length) {\n      out = sorted;\n      seen.fill(0);\n    } else if (n * 8 < sorted.length) {\n      const found = ranks.subarray(0, n);\n      found.forEach((r) => seen[r] = 0);\n      out = Array.from(found.sort(), (r) => sorted[r]);\n    } else {\n      out = [];\n      for (let r = 0; r < sorted.length; r++) {\n        if (seen[r] === 1) {\n          seen[r] = 0;\n          out.push(sorted[r]);\n        }\n      }\n    }\n    return out;\n  };\n}\nfunction anchorFromPaths(graph, preferred) {\n  const { anchorPaths, pathVisits } = graph;\n  const reference = anchorPaths && pathVisits ? chooseReferencePath(anchorPaths, preferred) : void 0;\n  if (!reference || !anchorPaths || !pathVisits) {\n    return graph;\n  }\n  const samplesOf = sampleSorter(pathVisits);\n  const referenceIndex = pathVisits.pathIndex(reference.name);\n  return {\n    ...graph,\n    nodes: graph.nodes.map(\n      (node) => anchorNode(node, pathVisits, referenceIndex, samplesOf)\n    ),\n    anchoredBy: \"paths\",\n    referencePath: reference.name\n  };\n}\nfunction anchorGraph(graph, preferred) {\n  if (graph.anchoredBy !== \"tags\") {\n    return anchorFromPaths(graph, preferred);\n  }\n  const referencePath = taggedReferencePath(graph);\n  return referencePath ? { ...graph, referencePath } : graph;\n}\nfunction taggedReferencePath(graph) {\n  const refName = graph.nodes.find((n) => n.stable?.rank === 0)?.stable?.refName;\n  return refName !== void 0 && graph.anchorPaths?.some((p) => p.name === refName) ? refName : void 0;\n}\nfunction trimOrigins(graph, kept) {\n  if (!graph.anchorPaths) {\n    return void 0;\n  }\n  const lengthOf = new Map(graph.nodes.map((n) => [n.id, n.length]));\n  const bp = (ids, end = ids.length) => {\n    let sum = 0;\n    for (let i = 0; i < end; i++) {\n      sum += lengthOf.get(ids[i]) ?? 0;\n    }\n    return sum;\n  };\n  const byOrigin = groupBy(graph.paths ?? [], (p) => pathOrigin(p.name).name);\n  return graph.anchorPaths.map((o) => {\n    const pieces = byOrigin.get(o.name);\n    const path = pieces?.length === 1 ? pieces[0] : void 0;\n    const stretch = path && kept.get(path.name);\n    return path && stretch ? {\n      ...o,\n      start: o.start + bp(path.nodeIds, stretch.first),\n      length: bp(stretch.nodeIds)\n    } : o;\n  });\n}\nfunction referenceVisitStarts(graph) {\n  const { pathVisits } = graph;\n  const cache = /* @__PURE__ */ new Map();\n  return (node) => {\n    let starts = cache.get(node.id);\n    if (!starts) {\n      starts = [];\n      const slot = pathVisits ? pathVisits.slot(node.name) : -1;\n      const p = slot >= 0 ? pathVisits.pathIndex(node.stable.refName) : -1;\n      if (p >= 0) {\n        for (let i = pathVisits.offsets[slot]; i < pathVisits.offsets[slot + 1]; i++) {\n          if (pathVisits.path[i] === p) {\n            starts.push(pathVisits.start[i]);\n          }\n        }\n      }\n      if (starts.length < 2) {\n        starts = [node.stable.start];\n      }\n      cache.set(node.id, starts);\n    }\n    return starts;\n  };\n}\n\nexport {\n  pathOrigin,\n  surveyPaths,\n  chooseReferencePath,\n  anchorFromPaths,\n  anchorGraph,\n  trimOrigins,\n  referenceVisitStarts\n};\n"],
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package/dist/chunks/{chunk-UGCNPRKC.js → chunk-5Z4VIKXZ.js}

@@ -1,2 +1,2 @@
-var r=JBrowseExports["@jbrowse/core/ui"],e=t=>r!=null&&t in Object(r)?r[t]:Object.assign(function(){throw new Error("This JBrowse does not provide '"+t+"' from '@jbrowse/core/ui' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse")},{jbrowseHostMissing:t});var s=e("AssemblySelector");var c=e("CascadingMenuButton");var p=e("ContextMenu");var a=e("Dialog");var l=e("ErrorBanner");var i=e("ErrorMessage");var x=e("FileSelector");var d=e("InfoDialog");var u=e("LAUNCH_LABEL");var g=e("LoadingEllipses"),m=e("LoadingOverlay");var S=e("pushLaunchViewMenuItem");var T=r&&r.__esModule?r.default:r;var n=JBrowseExports["@mui/material"],o=t=>n!=null&&t in Object(n)?n[t]:Object.assign(function(){throw new Error("This JBrowse does not provide '"+t+"' from '@mui/material' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse")},{jbrowseHostMissing:t});var b=o("Alert");var C=o("Autocomplete");var I=o("Button");var h=o("Checkbox");var E=o("DialogActions"),B=o("DialogContent");var A=o("FormControl"),D=o("FormControlLabel");var M=o("FormLabel");var w=o("IconButton");var P=o("InputLabel"),v=o("LinearProgress");var y=o("ListItemText");var F=o("MenuItem");var R=o("Paper");var k=o("Radio"),_=o("RadioGroup");var G=o("Select");var N=o("Switch");var f=o("TextField");var H=o("Tooltip"),O=o("Typography"),J=o("alpha");var V=n&&n.__esModule?n.default:n;export{s as a,c as b,p as c,a as d,l as e,i as f,x as g,d as h,u as i,g as j,m as k,S as l,b as m,C as n,I as o,h as p,E as q,B as r,A as s,D as t,M as u,w as v,P as w,v as x,y,F as z,R as A,k as B,_ as C,G as D,N as E,f as F,H as G,O as H,J as I};
-//# sourceMappingURL=chunk-UGCNPRKC.js.map
+var r=JBrowseExports["@jbrowse/core/ui"],e=t=>r!=null&&t in Object(r)?r[t]:Object.assign(function(){throw new Error("This JBrowse does not provide '"+t+"' from '@jbrowse/core/ui' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse")},{jbrowseHostMissing:t});var s=e("AssemblySelector");var c=e("CascadingMenuButton");var p=e("ContextMenu");var a=e("Dialog");var l=e("ErrorBanner");var i=e("ErrorMessage");var x=e("FileSelector");var d=e("InfoDialog");var u=e("LAUNCH_LABEL");var g=e("LoadingEllipses"),m=e("LoadingOverlay");var S=e("pushLaunchViewMenuItem");var T=r&&r.__esModule?r.default:r;var n=JBrowseExports["@mui/material"],o=t=>n!=null&&t in Object(n)?n[t]:Object.assign(function(){throw new Error("This JBrowse does not provide '"+t+"' from '@mui/material' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse")},{jbrowseHostMissing:t});var b=o("Alert");var L=o("Autocomplete");var h=o("Button");var I=o("Checkbox");var E=o("DialogActions"),B=o("DialogContent");var A=o("FormControl"),D=o("FormControlLabel");var M=o("FormLabel");var w=o("IconButton");var P=o("InputLabel"),y=o("LinearProgress");var v=o("ListItemText");var F=o("MenuItem");var k=o("Paper");var R=o("Radio"),_=o("RadioGroup");var G=o("Select");var f=o("Switch");var N=o("TextField");var H=o("Tooltip"),O=o("Typography"),J=o("alpha");var V=n&&n.__esModule?n.default:n;export{s as a,c as b,p as c,a as d,l as e,i as f,x as g,d as h,u as i,g as j,m as k,S as l,b as m,L as n,h as o,I as p,E as q,B as r,A as s,D as t,M as u,w as v,P as w,y as x,v as y,F as z,k as A,R as B,_ as C,G as D,f as E,N as F,H as G,O as H,J as I};
+//# sourceMappingURL=chunk-5Z4VIKXZ.js.map

package/dist/chunks/chunk-5Z4VIKXZ.js.map

@@ -0,0 +1,7 @@
+{
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+  "sources": ["host:@jbrowse/core/ui", "host:@mui/material"],
+  "sourcesContent": ["const host = JBrowseExports[\"@jbrowse/core/ui\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/core/ui\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport const ActionLink = /* @__PURE__ */ read(\"ActionLink\")\nexport const AssemblySelector = /* @__PURE__ */ read(\"AssemblySelector\")\nexport const BaseExportSvgDialog = /* @__PURE__ */ read(\"BaseExportSvgDialog\")\nexport const BaseTooltip = /* @__PURE__ */ read(\"BaseTooltip\")\nexport const CONTEXT_MENU_Z_INDEX = /* @__PURE__ */ read(\"CONTEXT_MENU_Z_INDEX\")\nexport const CascadingMenu = /* @__PURE__ */ read(\"CascadingMenu\")\nexport const CascadingMenuButton = /* @__PURE__ */ read(\"CascadingMenuButton\")\nexport const ConfirmDialog = /* @__PURE__ */ read(\"ConfirmDialog\")\nexport const ContextMenu = /* @__PURE__ */ read(\"ContextMenu\")\nexport const CopyToClipboardButton = /* @__PURE__ */ read(\"CopyToClipboardButton\")\nexport const Crosshairs = /* @__PURE__ */ read(\"Crosshairs\")\nexport const Dialog = /* @__PURE__ */ read(\"Dialog\")\nexport const EditableTypography = /* @__PURE__ */ read(\"EditableTypography\")\nexport const ErrorBanner = /* @__PURE__ */ read(\"ErrorBanner\")\nexport const ErrorBar = /* @__PURE__ */ read(\"ErrorBar\")\nexport const ErrorMessage = /* @__PURE__ */ read(\"ErrorMessage\")\nexport const ErrorOverlay = /* @__PURE__ */ read(\"ErrorOverlay\")\nexport const ExportSvgDialog = /* @__PURE__ */ read(\"ExportSvgDialog\")\nexport const ExternalLink = /* @__PURE__ */ read(\"ExternalLink\")\nexport const FatalErrorDialog = /* @__PURE__ */ read(\"FatalErrorDialog\")\nexport const FileDropZone = /* @__PURE__ */ read(\"FileDropZone\")\nexport const FileSelector = /* @__PURE__ */ read(\"FileSelector\")\nexport const GpuFallbackButton = /* @__PURE__ */ read(\"GpuFallbackButton\")\nexport const INLINE_MENU_ROW_WIDTH = /* @__PURE__ */ read(\"INLINE_MENU_ROW_WIDTH\")\nexport const InfoDialog = /* @__PURE__ */ read(\"InfoDialog\")\nexport const JexlFilterDialog = /* @__PURE__ */ read(\"JexlFilterDialog\")\nexport const LAUNCH_LABEL = /* @__PURE__ */ read(\"LAUNCH_LABEL\")\nexport const LEGEND_ROW_HEIGHT = /* @__PURE__ */ read(\"LEGEND_ROW_HEIGHT\")\nexport const LEGEND_SWATCH = /* @__PURE__ */ read(\"LEGEND_SWATCH\")\nexport const LabeledCheckbox = /* @__PURE__ */ read(\"LabeledCheckbox\")\nexport const LegendSwatchGlyph = /* @__PURE__ */ read(\"LegendSwatchGlyph\")\nexport const LoadingEllipses = /* @__PURE__ */ read(\"LoadingEllipses\")\nexport const LoadingOverlay = /* @__PURE__ */ read(\"LoadingOverlay\")\nexport const LoadingProgress = /* @__PURE__ */ read(\"LoadingProgress\")\nexport const LogoFull = /* @__PURE__ */ read(\"LogoFull\")\nexport const Logomark = /* @__PURE__ */ read(\"Logomark\")\nexport const MAX_LEGEND_ITEMS = /* @__PURE__ */ read(\"MAX_LEGEND_ITEMS\")\nexport const Menu = /* @__PURE__ */ read(\"Menu\")\nexport const MonospaceTextField = /* @__PURE__ */ read(\"MonospaceTextField\")\nexport const NumberTextField = /* @__PURE__ */ read(\"NumberTextField\")\nexport const PluggableComponent = /* @__PURE__ */ read(\"PluggableComponent\")\nexport const PluggableComponents = /* @__PURE__ */ read(\"PluggableComponents\")\nexport const PluggableElements = /* @__PURE__ */ read(\"PluggableElements\")\nexport const PrerenderedCanvas = /* @__PURE__ */ read(\"PrerenderedCanvas\")\nexport const ProgressChip = /* @__PURE__ */ read(\"ProgressChip\")\nexport const RefNameAutocomplete = /* @__PURE__ */ read(\"RefNameAutocomplete\")\nexport const RefNameAutocompleteEndAdornment = /* @__PURE__ */ read(\"RefNameAutocompleteEndAdornment\")\nexport const ReplaceCurrentViewButton = /* @__PURE__ */ read(\"ReplaceCurrentViewButton\")\nexport const ResetToDefaultButton = /* @__PURE__ */ read(\"ResetToDefaultButton\")\nexport const ResizeHandle = /* @__PURE__ */ read(\"ResizeHandle\")\nexport const SanitizedHTML = /* @__PURE__ */ read(\"SanitizedHTML\")\nexport const ScrollChrome = /* @__PURE__ */ read(\"ScrollChrome\")\nexport const ScrollEdgeShadow = /* @__PURE__ */ read(\"ScrollEdgeShadow\")\nexport const SettingsChangesTable = /* @__PURE__ */ read(\"SettingsChangesTable\")\nexport const ShareLinkField = /* @__PURE__ */ read(\"ShareLinkField\")\nexport const SingleSlider = /* @__PURE__ */ read(\"SingleSlider\")\nexport const SliderTooltip = /* @__PURE__ */ read(\"SliderTooltip\")\nexport const StatusProgressBar = /* @__PURE__ */ read(\"StatusProgressBar\")\nexport const SubmitDialog = /* @__PURE__ */ read(\"SubmitDialog\")\nexport const SubmitForm = /* @__PURE__ */ read(\"SubmitForm\")\nexport const SvgColorLegend = /* @__PURE__ */ read(\"SvgColorLegend\")\nexport const TOOLTIP_Z_INDEX = /* @__PURE__ */ read(\"TOOLTIP_Z_INDEX\")\nexport const TagTextField = /* @__PURE__ */ read(\"TagTextField\")\nexport const VIEW_HEADER_HEIGHT = /* @__PURE__ */ read(\"VIEW_HEADER_HEIGHT\")\nexport const VerticalScrollbar = /* @__PURE__ */ read(\"VerticalScrollbar\")\nexport const ViewLoadingScreen = /* @__PURE__ */ read(\"ViewLoadingScreen\")\nexport const addExtensionElement = /* @__PURE__ */ read(\"addExtensionElement\")\nexport const adornmentReservePx = /* @__PURE__ */ read(\"adornmentReservePx\")\nexport const checkboxItem = /* @__PURE__ */ read(\"checkboxItem\")\nexport const colorFwdStrand = /* @__PURE__ */ read(\"colorFwdStrand\")\nexport const colorInterchrom = /* @__PURE__ */ read(\"colorInterchrom\")\nexport const colorLongInsert = /* @__PURE__ */ read(\"colorLongInsert\")\nexport const colorLongreadInv = /* @__PURE__ */ read(\"colorLongreadInv\")\nexport const colorPairLL = /* @__PURE__ */ read(\"colorPairLL\")\nexport const colorPairLR = /* @__PURE__ */ read(\"colorPairLR\")\nexport const colorPairLRDark = /* @__PURE__ */ read(\"colorPairLRDark\")\nexport const colorPairRL = /* @__PURE__ */ read(\"colorPairRL\")\nexport const colorPairRR = /* @__PURE__ */ read(\"colorPairRR\")\nexport const colorRevStrand = /* @__PURE__ */ read(\"colorRevStrand\")\nexport const colorScaleIsEmpty = /* @__PURE__ */ read(\"colorScaleIsEmpty\")\nexport const colorShortInsert = /* @__PURE__ */ read(\"colorShortInsert\")\nexport const colorSplitReadInversion = /* @__PURE__ */ read(\"colorSplitReadInversion\")\nexport const colorSupplementary = /* @__PURE__ */ read(\"colorSupplementary\")\nexport const colorUnmappedMate = /* @__PURE__ */ read(\"colorUnmappedMate\")\nexport const colorUnmappedMateDark = /* @__PURE__ */ read(\"colorUnmappedMateDark\")\nexport const createJBrowseBaseTheme = /* @__PURE__ */ read(\"createJBrowseBaseTheme\")\nexport const createJBrowseTheme = /* @__PURE__ */ read(\"createJBrowseTheme\")\nexport const createJBrowseThemeFromArgs = /* @__PURE__ */ read(\"createJBrowseThemeFromArgs\")\nexport const defaultThemes = /* @__PURE__ */ read(\"defaultThemes\")\nexport const getInputWidth = /* @__PURE__ */ read(\"getInputWidth\")\nexport const hoverBoxStyle = /* @__PURE__ */ read(\"hoverBoxStyle\")\nexport const launchTargetsMenuItem = /* @__PURE__ */ read(\"launchTargetsMenuItem\")\nexport const legendDistinguishesColors = /* @__PURE__ */ read(\"legendDistinguishesColors\")\nexport const legendEntries = /* @__PURE__ */ read(\"legendEntries\")\nexport const legendIsReadable = /* @__PURE__ */ read(\"legendIsReadable\")\nexport const legendSpecOf = /* @__PURE__ */ read(\"legendSpecOf\")\nexport const legendSummary = /* @__PURE__ */ read(\"legendSummary\")\nexport const legendSwatches = /* @__PURE__ */ read(\"legendSwatches\")\nexport const makeSizeMenu = /* @__PURE__ */ read(\"makeSizeMenu\")\nexport const makeSizeSubMenu = /* @__PURE__ */ read(\"makeSizeSubMenu\")\nexport const matchesTrackSelector = /* @__PURE__ */ read(\"matchesTrackSelector\")\nexport const measureLegendText = /* @__PURE__ */ read(\"measureLegendText\")\nexport const methylated5hmC = /* @__PURE__ */ read(\"methylated5hmC\")\nexport const methylated5mC = /* @__PURE__ */ read(\"methylated5mC\")\nexport const nonEmptyLegendSections = /* @__PURE__ */ read(\"nonEmptyLegendSections\")\nexport const pushIntoSubMenu = /* @__PURE__ */ read(\"pushIntoSubMenu\")\nexport const pushLaunchViewMenuItem = /* @__PURE__ */ read(\"pushLaunchViewMenuItem\")\nexport const radioItems = /* @__PURE__ */ read(\"radioItems\")\nexport const replaceViewAction = /* @__PURE__ */ read(\"replaceViewAction\")\nexport const resolveSubMenu = /* @__PURE__ */ read(\"resolveSubMenu\")\nexport const sliderScale = /* @__PURE__ */ read(\"sliderScale\")\nexport const staysOpenOnClick = /* @__PURE__ */ read(\"staysOpenOnClick\")\nexport const tagColorPalette = /* @__PURE__ */ read(\"tagColorPalette\")\nexport const unmethylated5mC = /* @__PURE__ */ read(\"unmethylated5mC\")\nexport const useAssemblySelection = /* @__PURE__ */ read(\"useAssemblySelection\")\nexport const useCopyToClipboard = /* @__PURE__ */ read(\"useCopyToClipboard\")\nexport const useExportSvgPreference = /* @__PURE__ */ read(\"useExportSvgPreference\")\nexport const useMouseState = /* @__PURE__ */ read(\"useMouseState\")\nexport const useMouseTracking = /* @__PURE__ */ read(\"useMouseTracking\")\nexport const useRecentLocations = /* @__PURE__ */ read(\"useRecentLocations\")\nexport const wrapComponent = /* @__PURE__ */ read(\"wrapComponent\")\nexport default host && host.__esModule ? host.default : host", "const host = JBrowseExports[\"@mui/material\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@mui/material\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport const Accordion = /* @__PURE__ */ read(\"Accordion\")\nexport const AccordionActions = /* @__PURE__ */ read(\"AccordionActions\")\nexport const AccordionDetails = /* @__PURE__ */ read(\"AccordionDetails\")\nexport const AccordionSummary = /* @__PURE__ */ read(\"AccordionSummary\")\nexport const Alert = /* @__PURE__ */ read(\"Alert\")\nexport const AlertTitle = /* @__PURE__ */ read(\"AlertTitle\")\nexport const Autocomplete = /* @__PURE__ */ read(\"Autocomplete\")\nexport const Avatar = /* @__PURE__ */ read(\"Avatar\")\nexport const AvatarGroup = /* @__PURE__ */ read(\"AvatarGroup\")\nexport const Backdrop = /* @__PURE__ */ read(\"Backdrop\")\nexport const Badge = /* @__PURE__ */ read(\"Badge\")\nexport const Box = /* @__PURE__ */ read(\"Box\")\nexport const Breadcrumbs = /* @__PURE__ */ read(\"Breadcrumbs\")\nexport const Button = /* @__PURE__ */ read(\"Button\")\nexport const ButtonGroup = /* @__PURE__ */ read(\"ButtonGroup\")\nexport const Card = /* @__PURE__ */ read(\"Card\")\nexport const CardActionArea = /* @__PURE__ */ read(\"CardActionArea\")\nexport const CardActions = /* @__PURE__ */ read(\"CardActions\")\nexport const CardContent = /* @__PURE__ */ read(\"CardContent\")\nexport const CardHeader = /* @__PURE__ */ read(\"CardHeader\")\nexport const CardMedia = /* @__PURE__ */ read(\"CardMedia\")\nexport const Checkbox = /* @__PURE__ */ read(\"Checkbox\")\nexport const Chip = /* @__PURE__ */ read(\"Chip\")\nexport const CircularProgress = /* @__PURE__ */ read(\"CircularProgress\")\nexport const ClickAwayListener = /* @__PURE__ */ read(\"ClickAwayListener\")\nexport const Collapse = /* @__PURE__ */ read(\"Collapse\")\nexport const Container = /* @__PURE__ */ read(\"Container\")\nexport const Dialog = /* @__PURE__ */ read(\"Dialog\")\nexport const DialogActions = /* @__PURE__ */ read(\"DialogActions\")\nexport const DialogContent = /* @__PURE__ */ read(\"DialogContent\")\nexport const DialogContentText = /* @__PURE__ */ read(\"DialogContentText\")\nexport const DialogTitle = /* @__PURE__ */ read(\"DialogTitle\")\nexport const Divider = /* @__PURE__ */ read(\"Divider\")\nexport const Drawer = /* @__PURE__ */ read(\"Drawer\")\nexport const Fab = /* @__PURE__ */ read(\"Fab\")\nexport const Fade = /* @__PURE__ */ read(\"Fade\")\nexport const FilledInput = /* @__PURE__ */ read(\"FilledInput\")\nexport const FormControl = /* @__PURE__ */ read(\"FormControl\")\nexport const FormControlLabel = /* @__PURE__ */ read(\"FormControlLabel\")\nexport const FormGroup = /* @__PURE__ */ read(\"FormGroup\")\nexport const FormHelperText = /* @__PURE__ */ read(\"FormHelperText\")\nexport const FormLabel = /* @__PURE__ */ read(\"FormLabel\")\nexport const Grid = /* @__PURE__ */ read(\"Grid\")\nexport const Grid2 = /* @__PURE__ */ read(\"Grid2\")\nexport const Grow = /* @__PURE__ */ read(\"Grow\")\nexport const Icon = /* @__PURE__ */ read(\"Icon\")\nexport const IconButton = /* @__PURE__ */ read(\"IconButton\")\nexport const Input = /* @__PURE__ */ read(\"Input\")\nexport const InputAdornment = /* @__PURE__ */ read(\"InputAdornment\")\nexport const InputBase = /* @__PURE__ */ read(\"InputBase\")\nexport const InputLabel = /* @__PURE__ */ read(\"InputLabel\")\nexport const LinearProgress = /* @__PURE__ */ read(\"LinearProgress\")\nexport const Link = /* @__PURE__ */ read(\"Link\")\nexport const List = /* @__PURE__ */ read(\"List\")\nexport const ListItem = /* @__PURE__ */ read(\"ListItem\")\nexport const ListItemAvatar = /* @__PURE__ */ read(\"ListItemAvatar\")\nexport const ListItemButton = /* @__PURE__ */ read(\"ListItemButton\")\nexport const ListItemIcon = /* @__PURE__ */ read(\"ListItemIcon\")\nexport const ListItemSecondaryAction = /* @__PURE__ */ read(\"ListItemSecondaryAction\")\nexport const ListItemText = /* @__PURE__ */ read(\"ListItemText\")\nexport const ListSubheader = /* @__PURE__ */ read(\"ListSubheader\")\nexport const Menu = /* @__PURE__ */ read(\"Menu\")\nexport const MenuItem = /* @__PURE__ */ read(\"MenuItem\")\nexport const MenuList = /* @__PURE__ */ read(\"MenuList\")\nexport const Modal = /* @__PURE__ */ read(\"Modal\")\nexport const NativeSelect = /* @__PURE__ */ read(\"NativeSelect\")\nexport const OutlinedInput = /* @__PURE__ */ read(\"OutlinedInput\")\nexport const Pagination = /* @__PURE__ */ read(\"Pagination\")\nexport const PaginationItem = /* @__PURE__ */ read(\"PaginationItem\")\nexport const Paper = /* @__PURE__ */ read(\"Paper\")\nexport const Popover = /* @__PURE__ */ read(\"Popover\")\nexport const Popper = /* @__PURE__ */ read(\"Popper\")\nexport const Portal = /* @__PURE__ */ read(\"Portal\")\nexport const Radio = /* @__PURE__ */ read(\"Radio\")\nexport const RadioGroup = /* @__PURE__ */ read(\"RadioGroup\")\nexport const Rating = /* @__PURE__ */ 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@__PURE__ */ read(\"Stepper\")\nexport const SvgIcon = /* @__PURE__ */ read(\"SvgIcon\")\nexport const Switch = /* @__PURE__ */ read(\"Switch\")\nexport const Tab = /* @__PURE__ */ read(\"Tab\")\nexport const Table = /* @__PURE__ */ read(\"Table\")\nexport const TableBody = /* @__PURE__ */ read(\"TableBody\")\nexport const TableCell = /* @__PURE__ */ read(\"TableCell\")\nexport const TableContainer = /* @__PURE__ */ read(\"TableContainer\")\nexport const TableFooter = /* @__PURE__ */ read(\"TableFooter\")\nexport const TableHead = /* @__PURE__ */ read(\"TableHead\")\nexport const TablePagination = /* @__PURE__ */ read(\"TablePagination\")\nexport const TableRow = /* @__PURE__ */ read(\"TableRow\")\nexport const TableSortLabel = /* @__PURE__ */ read(\"TableSortLabel\")\nexport const Tabs = /* @__PURE__ */ read(\"Tabs\")\nexport const TextField = /* @__PURE__ */ read(\"TextField\")\nexport const TextareaAutosize = /* @__PURE__ */ read(\"TextareaAutosize\")\nexport const ThemeProvider = 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