npm - jbrowse-plugin-graphgenomeviewer - Versions diffs - 7.4.4 → 7.6.0 - Mend

jbrowse-plugin-graphgenomeviewer 7.4.4 → 7.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (134) hide show

package/dist/chunks/{chunk-6SWXMRAV.js → chunk-TWPUVVYH.js} RENAMED Viewed

@@ -1,2 +1,2 @@
 var e="#";function l(t){return t.split(e)[0]}var r=new Set(["_gbwt_ref"]);function p(t){return r.has(t)}function c(t){let n=t.split(e);return n.length>=3?`${n[0]}${e}${n[1]}`:void 0}function u(t){let n=t.split(e);return n.length>=3?n.slice(2).join(e):n.length===2?n[1]:t}function N(t){let[n="",o="",...s]=t.split(e);return s.length>0?{sample:n,haplotype:+o,contig:s.join(e)}:void 0}function S(t){let n=t.split(e),o=n.length>=2&&n[1]!==""?Number(n[1]):Number.NaN;return{sample:n[0],haplotype:Number.isFinite(o)?o:void 0}}function f(t,n){return n!==void 0&&(t===n||t.startsWith(n+e))}function a(t){return t.getConf("assemblyNameToPanSN")??{}}function h(t,n){return n===void 0?void 0:a(t)[n]??n}var i=new WeakMap;function m(t){let n=i.get(t);if(n===void 0){let o=a(t);n={};for(let s of new Set([...Object.keys(o),...t.getConf("assemblyNames")]))n[o[s]??s]=s;i.set(t,n)}return n}export{l as a,p as b,c,u as d,N as e,S as f,f as g,h,m as i};
-//# sourceMappingURL=chunk-6SWXMRAV.js.map
+//# sourceMappingURL=chunk-TWPUVVYH.js.map

package/dist/chunks/{chunk-6SWXMRAV.js.map → chunk-TWPUVVYH.js.map} RENAMED Viewed

@@ -1,6 +1,6 @@
 {
   "version": 3,
-  "sources": ["../../node_modules/.pnpm/@jbrowse+bandage-core@11.9.0/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-2JL2JVZ2.js"],
+  "sources": ["../../node_modules/.pnpm/@jbrowse+bandage-core@11.14.0/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-2JL2JVZ2.js"],
   "sourcesContent": ["// src/pansn.ts\nvar SEP = \"#\";\nfunction panSNSample(refName) {\n  return refName.split(SEP)[0];\n}\nvar GENERIC_SAMPLES = /* @__PURE__ */ new Set([\"_gbwt_ref\"]);\nfunction isGenericSample(sample) {\n  return GENERIC_SAMPLES.has(sample);\n}\nfunction panSNHaplotype(refName) {\n  const parts = refName.split(SEP);\n  return parts.length >= 3 ? `${parts[0]}${SEP}${parts[1]}` : void 0;\n}\nfunction panSNContig(refName) {\n  const parts = refName.split(SEP);\n  return parts.length >= 3 ? parts.slice(2).join(SEP) : parts.length === 2 ? parts[1] : refName;\n}\nfunction panSNFields(name) {\n  const [sample = \"\", haplotype = \"\", ...contig] = name.split(SEP);\n  return contig.length > 0 ? { sample, haplotype: +haplotype, contig: contig.join(SEP) } : void 0;\n}\nfunction parsePanSN(refName) {\n  const parts = refName.split(SEP);\n  const haplotype = parts.length >= 2 && parts[1] !== \"\" ? Number(parts[1]) : Number.NaN;\n  return {\n    sample: parts[0],\n    haplotype: Number.isFinite(haplotype) ? haplotype : void 0\n  };\n}\nfunction panSNMatchesPrefix(refName, prefix) {\n  return prefix !== void 0 && (refName === prefix || refName.startsWith(prefix + SEP));\n}\nfunction assemblyNameToPanSN(adapter) {\n  return adapter.getConf(\"assemblyNameToPanSN\") ?? {};\n}\nfunction resolvePanSNPrefix(adapter, name) {\n  return name === void 0 ? void 0 : assemblyNameToPanSN(adapter)[name] ?? name;\n}\nvar asmByPrefixCache = /* @__PURE__ */ new WeakMap();\nfunction assemblyByPanSNPrefix(adapter) {\n  let out = asmByPrefixCache.get(adapter);\n  if (out === void 0) {\n    const map = assemblyNameToPanSN(adapter);\n    out = {};\n    for (const asm of /* @__PURE__ */ new Set([\n      ...Object.keys(map),\n      ...adapter.getConf(\"assemblyNames\")\n    ])) {\n      out[map[asm] ?? asm] = asm;\n    }\n    asmByPrefixCache.set(adapter, out);\n  }\n  return out;\n}\n\nexport {\n  panSNSample,\n  isGenericSample,\n  panSNHaplotype,\n  panSNContig,\n  panSNFields,\n  parsePanSN,\n  panSNMatchesPrefix,\n  resolvePanSNPrefix,\n  assemblyByPanSNPrefix\n};\n"],
   "mappings": "AACA,IAAIA,EAAM,IACV,SAASC,EAAYC,EAAS,CAC5B,OAAOA,EAAQ,MAAMF,CAAG,EAAE,CAAC,CAC7B,CACA,IAAIG,EAAkC,IAAI,IAAI,CAAC,WAAW,CAAC,EAC3D,SAASC,EAAgBC,EAAQ,CAC/B,OAAOF,EAAgB,IAAIE,CAAM,CACnC,CACA,SAASC,EAAeJ,EAAS,CAC/B,IAAMK,EAAQL,EAAQ,MAAMF,CAAG,EAC/B,OAAOO,EAAM,QAAU,EAAI,GAAGA,EAAM,CAAC,CAAC,GAAGP,CAAG,GAAGO,EAAM,CAAC,CAAC,GAAK,MAC9D,CACA,SAASC,EAAYN,EAAS,CAC5B,IAAMK,EAAQL,EAAQ,MAAMF,CAAG,EAC/B,OAAOO,EAAM,QAAU,EAAIA,EAAM,MAAM,CAAC,EAAE,KAAKP,CAAG,EAAIO,EAAM,SAAW,EAAIA,EAAM,CAAC,EAAIL,CACxF,CACA,SAASO,EAAYC,EAAM,CACzB,GAAM,CAACL,EAAS,GAAIM,EAAY,GAAI,GAAGC,CAAM,EAAIF,EAAK,MAAMV,CAAG,EAC/D,OAAOY,EAAO,OAAS,EAAI,CAAE,OAAAP,EAAQ,UAAW,CAACM,EAAW,OAAQC,EAAO,KAAKZ,CAAG,CAAE,EAAI,MAC3F,CACA,SAASa,EAAWX,EAAS,CAC3B,IAAMK,EAAQL,EAAQ,MAAMF,CAAG,EACzBW,EAAYJ,EAAM,QAAU,GAAKA,EAAM,CAAC,IAAM,GAAK,OAAOA,EAAM,CAAC,CAAC,EAAI,OAAO,IACnF,MAAO,CACL,OAAQA,EAAM,CAAC,EACf,UAAW,OAAO,SAASI,CAAS,EAAIA,EAAY,MACtD,CACF,CACA,SAASG,EAAmBZ,EAASa,EAAQ,CAC3C,OAAOA,IAAW,SAAWb,IAAYa,GAAUb,EAAQ,WAAWa,EAASf,CAAG,EACpF,CACA,SAASgB,EAAoBC,EAAS,CACpC,OAAOA,EAAQ,QAAQ,qBAAqB,GAAK,CAAC,CACpD,CACA,SAASC,EAAmBD,EAASP,EAAM,CACzC,OAAOA,IAAS,OAAS,OAASM,EAAoBC,CAAO,EAAEP,CAAI,GAAKA,CAC1E,CACA,IAAIS,EAAmC,IAAI,QAC3C,SAASC,EAAsBH,EAAS,CACtC,IAAII,EAAMF,EAAiB,IAAIF,CAAO,EACtC,GAAII,IAAQ,OAAQ,CAClB,IAAMC,EAAMN,EAAoBC,CAAO,EACvCI,EAAM,CAAC,EACP,QAAWE,KAAuB,IAAI,IAAI,CACxC,GAAG,OAAO,KAAKD,CAAG,EAClB,GAAGL,EAAQ,QAAQ,eAAe,CACpC,CAAC,EACCI,EAAIC,EAAIC,CAAG,GAAKA,CAAG,EAAIA,EAEzBJ,EAAiB,IAAIF,EAASI,CAAG,CACnC,CACA,OAAOA,CACT",
   "names": ["SEP", "panSNSample", "refName", "GENERIC_SAMPLES", "isGenericSample", "sample", "panSNHaplotype", "parts", "panSNContig", "panSNFields", "name", "haplotype", "contig", "parsePanSN", "panSNMatchesPrefix", "prefix", "assemblyNameToPanSN", "adapter", "resolvePanSNPrefix", "asmByPrefixCache", "assemblyByPanSNPrefix", "out", "map", "asm"]