jbrowse-plugin-graphgenomeviewer 7.3.0 → 7.3.2

package/dist/chunks/chunk-VQ77X5QU.js

@@ -1,4 +0,0 @@
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package/dist/chunks/chunk-YKSUKPYY.js

@@ -1,2 +0,0 @@
-import{a as m}from"./chunk-JCAZTNYG.js";import{d as i,e as u,g as o,k as l}from"./chunk-B2EP6FOQ.js";import{h as d}from"./chunk-7HWHWPRW.js";var c={steps:"walkStepBudget",bytes:"walkByteBudget"},g=class{constructor(r,e){this.file=r;this.adapter=e;this.reader=new o(r)}async haplotypeNames(r={}){let{haplotypes:e}=await this.reader.header(r);return e.length>0?e:void 0}budgets(){return{stepBudget:this.adapter.getConf("walkStepBudget"),byteBudget:this.adapter.getConf("walkByteBudget"),budgetNames:c}}async subgraph(r,e,{signal:s,haplotypes:n,walkRows:a}){let t=this.budgets(),{graph:p,kept:b,fragments:f}=await this.reader.cut(r,e,{...t,stepBudget:a?1/0:t.stepBudget,signal:s,keep:u(n?.map(h=>d(this.adapter,h)),r)});return m(p.tables(b,f),e,a)}async referenceNodes(r,e,s){let n=[];await l(this.file,r,await this.reader.queryStart(e.start,s),e.end,{signal:s.signal,lineCallback:t=>{let p=t.split("	");p[3]==="ref"&&n.push(p)}});let a=new Set;return i(n).filter(t=>t.refName!==r||t.end<=e.start||t.start>=e.end||a.has(t.id)?!1:(a.add(t.id),!0))}};export{g as a};
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