jbrowse-plugin-graphgenomeviewer 7.1.5 → 7.1.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (23) hide show
  1. package/dist/chunks/{GraphGenomeView-GQRUDWBS.js → GraphGenomeView-QAPK6GP5.js} +2 -2
  2. package/dist/chunks/{LinearGraphDisplay-62N6ZNWO.js → LinearGraphDisplay-5EY4T2XM.js} +2 -2
  3. package/dist/chunks/{chunk-YNTSFMXQ.js → chunk-IENKQEAC.js} +1 -1
  4. package/dist/chunks/{chunk-YNTSFMXQ.js.map → chunk-IENKQEAC.js.map} +2 -2
  5. package/dist/chunks/{chunk-46CFLCVZ.js → chunk-LP73EZV4.js} +3 -3
  6. package/dist/chunks/{chunk-46CFLCVZ.js.map → chunk-LP73EZV4.js.map} +4 -4
  7. package/dist/chunks/chunk-WLKQQZ62.js +2 -0
  8. package/dist/chunks/chunk-WLKQQZ62.js.map +7 -0
  9. package/dist/chunks/{renderSvg-RR4VUNIL.js → renderSvg-LBMWZDLB.js} +2 -2
  10. package/dist/jbrowse-plugin-graphgenomeviewer.esm.js +2 -2
  11. package/dist/jbrowse-plugin-graphgenomeviewer.esm.js.map +1 -1
  12. package/package.json +1 -1
  13. package/src/GraphGenomeView/components/FacetPanels.tsx +0 -3
  14. package/src/GraphGenomeView/components/GraphCanvas.tsx +13 -5
  15. package/src/GraphGenomeView/components/usePaneGestures.test.tsx +203 -1
  16. package/src/GraphGenomeView/components/usePaneGestures.ts +218 -38
  17. package/src/GraphGenomeView/host.ts +2 -0
  18. package/src/version.ts +1 -1
  19. package/dist/chunks/chunk-62TV2NQA.js +0 -2
  20. package/dist/chunks/chunk-62TV2NQA.js.map +0 -7
  21. /package/dist/chunks/{GraphGenomeView-GQRUDWBS.js.map → GraphGenomeView-QAPK6GP5.js.map} +0 -0
  22. /package/dist/chunks/{LinearGraphDisplay-62N6ZNWO.js.map → LinearGraphDisplay-5EY4T2XM.js.map} +0 -0
  23. /package/dist/chunks/{renderSvg-RR4VUNIL.js.map → renderSvg-LBMWZDLB.js.map} +0 -0
@@ -1,4 +1,4 @@
1
- import{a as C}from"./chunk-62TV2NQA.js";import"./chunk-7UTCUHQI.js";import"./chunk-46CFLCVZ.js";import"./chunk-YNTSFMXQ.js";import{k as d}from"./chunk-NM7JYFMG.js";import"./chunk-XO2PD5JO.js";import"./chunk-X7LTMIYL.js";import"./chunk-HYKQBZA4.js";import"./chunk-A7DB4V4C.js";import"./chunk-QJMXLCUM.js";import"./chunk-QKEY7EU7.js";import"./chunk-Y7UUDKJL.js";import"./chunk-HVBY3TGB.js";import"./chunk-YBLNN5FU.js";import"./chunk-MVVXRZXV.js";import"./chunk-KM3QNC77.js";import"./chunk-5OI6LO4I.js";import"./chunk-NDRLCGPC.js";import"./chunk-TENPGIPX.js";import{h as x}from"./chunk-YU7T5WOQ.js";import{A as l,F as L,H as p,e as s,j as v,o as n,x as G}from"./chunk-UGCNPRKC.js";import{a as y,b as a,c as r,d as i}from"./chunk-JMBDTNUR.js";var w=d()({paper:{padding:16,margin:8,maxWidth:560,marginInline:"auto",display:"flex",flexDirection:"column",gap:12},row:{display:"flex",alignItems:"center",justifyContent:"space-between",gap:8}}),E=i(function({model:e}){let{classes:t}=w();return e.isLoading?r(l,{className:t.paper,"data-testid":"graph-genome-loading",children:[r("div",{className:t.row,children:[a(v,{variant:"h6",message:e.statusMessage}),a(n,{size:"small","data-testid":"graph-genome-cancel",onClick:()=>{e.cancelLoad()},children:"Cancel"})]}),a(G,{variant:"indeterminate"})]}):e.error?a(l,{className:t.paper,children:a(s,{error:e.error,onReset:()=>{e.retryLoad()}})}):a(l,{className:t.paper,"data-testid":"graph-genome-load-canceled",children:r("div",{className:t.row,children:[a(p,{variant:"h6",children:"Loading canceled"}),a(n,{variant:"contained",size:"small","data-testid":"graph-genome-retry",onClick:()=>{e.retryLoad()},children:"Retry"})]})})}),g=E;var F=`H VN:Z:1.0
1
+ import{a as C}from"./chunk-WLKQQZ62.js";import"./chunk-7UTCUHQI.js";import"./chunk-LP73EZV4.js";import"./chunk-IENKQEAC.js";import{k as d}from"./chunk-NM7JYFMG.js";import"./chunk-XO2PD5JO.js";import"./chunk-X7LTMIYL.js";import"./chunk-HYKQBZA4.js";import"./chunk-A7DB4V4C.js";import"./chunk-QJMXLCUM.js";import"./chunk-QKEY7EU7.js";import"./chunk-Y7UUDKJL.js";import"./chunk-HVBY3TGB.js";import"./chunk-YBLNN5FU.js";import"./chunk-MVVXRZXV.js";import"./chunk-KM3QNC77.js";import"./chunk-5OI6LO4I.js";import"./chunk-NDRLCGPC.js";import"./chunk-TENPGIPX.js";import{h as x}from"./chunk-YU7T5WOQ.js";import{A as l,F as L,H as p,e as s,j as v,o as n,x as G}from"./chunk-UGCNPRKC.js";import{a as y,b as a,c as r,d as i}from"./chunk-JMBDTNUR.js";var w=d()({paper:{padding:16,margin:8,maxWidth:560,marginInline:"auto",display:"flex",flexDirection:"column",gap:12},row:{display:"flex",alignItems:"center",justifyContent:"space-between",gap:8}}),E=i(function({model:e}){let{classes:t}=w();return e.isLoading?r(l,{className:t.paper,"data-testid":"graph-genome-loading",children:[r("div",{className:t.row,children:[a(v,{variant:"h6",message:e.statusMessage}),a(n,{size:"small","data-testid":"graph-genome-cancel",onClick:()=>{e.cancelLoad()},children:"Cancel"})]}),a(G,{variant:"indeterminate"})]}):e.error?a(l,{className:t.paper,children:a(s,{error:e.error,onReset:()=>{e.retryLoad()}})}):a(l,{className:t.paper,"data-testid":"graph-genome-load-canceled",children:r("div",{className:t.row,children:[a(p,{variant:"h6",children:"Loading canceled"}),a(n,{variant:"contained",size:"small","data-testid":"graph-genome-retry",onClick:()=>{e.retryLoad()},children:"Retry"})]})})}),g=E;var F=`H VN:Z:1.0
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  S 1 ACGT
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  S 2 GGCC
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  S 3 TTAA
@@ -7,4 +7,4 @@ L 1 + 2 + 0M
7
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  L 1 + 3 + 0M
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  L 2 + 4 + 0M
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  L 3 + 4 + 0M`,S=d()({column:{display:"flex",flexDirection:"column",gap:8},rowEnd:{display:"flex",gap:8,alignItems:"flex-end"},rowCenter:{display:"flex",gap:8,alignItems:"center"},flex1:{flex:1},paper:{padding:16,margin:8,maxWidth:560,marginInline:"auto"},header:{marginBottom:12},footer:{marginTop:12,display:"flex",justifyContent:"flex-end"}}),T=i(function({model:e}){let{classes:t}=S(),[m,M]=x("");function u(){let o=m.trim();o&&e.loadGFAFromLocation({uri:o,locationType:"UriLocation"})}function N(o){let c=o.target.files?.[0];o.target.value="",c&&c.text().then(f=>e.loadGFA(f,c.name)).catch(f=>{e.setError(f)})}return r(l,{className:t.paper,children:[a("div",{className:t.header,children:a(p,{variant:"h6",children:"Load a GFA graph"})}),r("div",{className:t.column,children:[r("div",{className:t.rowCenter,children:[r(n,{variant:"outlined",component:"label",size:"small",children:["Choose file",a("input",{type:"file",accept:".gfa,.gfa1,.gfa2",hidden:!0,onChange:o=>{N(o)}})]}),a(p,{variant:"caption",color:"text.secondary",children:"Whole-file GFA; best for small/medium graphs."})]}),r("div",{className:t.rowEnd,children:[a(L,{size:"small",label:"URL",placeholder:"https://example.com/graph.gfa",value:m,onChange:o=>{M(o.target.value)},onKeyDown:o=>{o.key==="Enter"&&u()},className:t.flex1}),a(n,{variant:"contained",onClick:()=>{u()},disabled:!m.trim(),children:"Open"})]})]}),a("div",{className:t.footer,children:a(n,{size:"small",onClick:()=>{e.loadGFA(F,"Example graph")},children:"Load 4-node example"})}),e.error?a(s,{error:e.error}):null]})}),P=T;var A=i(function({model:e}){return e.hasGraph?a(C,{model:e}):e.canRetryLoad&&(e.error||e.loadCanceled)?a(g,{model:e}):r(y,{children:[e.isLoading?a(g,{model:e}):null,a("div",{hidden:e.isLoading,children:a(P,{model:e})})]})}),J=A;export{J as default};
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@@ -1,2 +1,2 @@
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- import{a as g}from"./chunk-62TV2NQA.js";import"./chunk-7UTCUHQI.js";import"./chunk-46CFLCVZ.js";import"./chunk-YNTSFMXQ.js";import"./chunk-NM7JYFMG.js";import"./chunk-XO2PD5JO.js";import"./chunk-X7LTMIYL.js";import"./chunk-HYKQBZA4.js";import"./chunk-A7DB4V4C.js";import"./chunk-QJMXLCUM.js";import"./chunk-QKEY7EU7.js";import"./chunk-Y7UUDKJL.js";import"./chunk-HVBY3TGB.js";import"./chunk-YBLNN5FU.js";import"./chunk-MVVXRZXV.js";import"./chunk-KM3QNC77.js";import"./chunk-5OI6LO4I.js";import"./chunk-NDRLCGPC.js";import"./chunk-TENPGIPX.js";import{h as y}from"./chunk-YU7T5WOQ.js";import"./chunk-UGCNPRKC.js";import{b as e,c as l,d as T}from"./chunk-JMBDTNUR.js";var s=JBrowseExports["@jbrowse/display-kit/DisplayBackgroundProgress"];var v=s&&s.__esModule?s.default:s;var i=JBrowseExports["@jbrowse/display-kit/DisplayErrorBar"];var h=i&&i.__esModule?i.default:i;var a=JBrowseExports["@jbrowse/display-kit/DisplayLoadingOverlay"];var O=a&&a.__esModule?a.default:a;var n=JBrowseExports["@jbrowse/display-kit/TooLargeMessage"];var f=n&&n.__esModule?n.default:n;var t=JBrowseExports["@jbrowse/display-ui"],p=r=>t!=null&&r in Object(t)?t[r]:Object.assign(function(){throw new Error("This JBrowse does not provide '"+r+"' from '@jbrowse/display-ui' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse")},{jbrowseHostMissing:r});var w=p("BottomRightCornerContext");var c=p("TrackOverlayPortal");var L=p("useChromeOverlayOverride");var j=t&&t.__esModule?t.default:t;var D={TooLarge:f,ErrorBar:h,Loading:O,BackgroundProgress:v};function d({model:r,phase:o,drawn:u,testid:_,style:C,children:E,...B}){let{TooLarge:G,ErrorBar:S,Loading:b,BackgroundProgress:m}=L()??D,[P,A]=y(null),x={...B,"data-testid":_,"data-display-id":r.configuration.displayId,"data-display-drawn":u,"data-display-phase":o};return o==="tooLarge"?e("div",{style:{display:"contents"},...x,children:e(c,{children:e("div",{style:{pointerEvents:"auto"},children:e(G,{model:r})})})}):l("div",{style:{position:"relative",height:r.height,...C},...x,children:[e(w,{value:P,children:E}),l(c,{children:[e(S,{model:r,visible:o==="error"}),e(b,{model:r,visible:o==="loading"||o==="canceled",immediate:!u}),e("div",{ref:A,style:{position:"absolute",bottom:2,right:2,display:"flex",flexDirection:"column",alignItems:"flex-end",gap:4,pointerEvents:"none"},children:e(m,{model:r,visible:o==="ready"})})]})]})}var I=T(function({model:o}){return e(d,{model:o,phase:o.displayPhase,drawn:o.painted&&o.geometryPainted,testid:"linear-graph-display","data-layout":o.chosenLayoutMode,"data-cut-tier":o.cutTier,"data-recuts":o.recuts,"data-node-count":o.hasGraph?o.nodeCount:void 0,"data-loading":o.isLoading?"":void 0,style:{width:o.paneWidth,height:o.height,overflow:"hidden"},children:e(g,{model:o,ownChrome:!1})})}),Q=I;export{Q as default};
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t=e.sourceAdapter?.samplesTsvLocation;return t&&uo(t)?t:void 0},get walkRowGroupFields(){return er(e.walkRowSampleTable)},get tubeMapColoring(){let t=e.tubeMapColorBy,n=e.walkRowSampleTable;if(!t||!n||!this.walkRowGroupFields.includes(t))return;let o=ir(t,n),s=(e.graph?.paths??[]).map(r=>W(r.name).name).filter(r=>r!==e.graph?.referencePath);return{field:t,valueOf:o,palette:sr(s.map(o)),unvalued:s.some(r=>o(r)==="")}},get tableGroupBy(){let t=e.walkRowGroupBy,n=e.walkRowSampleTable;return t&&n&&this.walkRowGroupFields.includes(t.field)?{groupBy:t,table:n}:void 0},get tubeMapPanelSplit(){let{field:t,domain:n}=e.facetSetting,o=this.tableGroupBy;return t!==""?{by:t,domain:n}:o?{by:"column",...o.groupBy,table:o.table}:void 0},get keptCohortRows(){let t=this.cohortWalkRows;return t&&et(t.rows,e.walkRowSamples)},get walkRowGroups(){let t=this.keptCohortRows,n=this.tableGroupBy;return t&&n?nr(t,n.table,n.groupBy):void 0},get walkRowBars(){let t=this.cohortWalkRows,n=this.keptCohortRows;return 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