jbrowse-plugin-graphgenomeviewer 7.1.13 → 7.2.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "jbrowse-plugin-graphgenomeviewer",
-  "version": "7.1.13",
+  "version": "7.2.0",
   "description": "JBrowse 2 graph genome (pangenome) view: rGFA reference-anchored layouts, the Bandage force-directed engine, and haplotype lanes read from a gbz-base database",
   "license": "GPL-3.0-or-later",
   "repository": {

package/src/GraphGenomeView/pane/renderingActions.ts

@@ -107,12 +107,14 @@ export const withRenderingActions = withLoadActions
             { fireImmediately: true },
           ),
         )
-        // A host fits the rows once, when it takes the pane over, which is
-        // before the legend measures the room it needs above them
+        // A host fits the rows when it takes the pane over, which is before
+        // the legend measures the room it needs above them and before a split
+        // into panels changes how tall the drawing is
         addDisposer(
           self,
           reaction(
-            () => self.fitPadTop,
+            () =>
+              `${self.fitPadTop} ${self.layoutBounds?.h} ${self.usableHeight}`,
             () => {
               if (self.viewportOwner === 'host') {
                 self.zoomToFit()

package/src/LinearGraphDisplay/LinearGraphDisplay.test.ts

@@ -1,3 +1,4 @@
+import { fittedTranslateY } from '@jbrowse/bandage-core/pipeline'
 import PluginManager from '@jbrowse/core/PluginManager'
 import {
   ConfigurationReference,
@@ -770,6 +771,20 @@ test('a tube map on its own axis ties each reference box to its bp in the linear
   expect(pane.tubeMapConnectors).toEqual([])
 })
 
+test('a hosted drawing whose height changes after the host took the pane is placed again', async () => {
+  const { pane } = await shownGraph({ paths: true })
+  await pane.switchLayout('tubemapref')
+  await wait(SETTLE_MS)
+  const expected = fittedTranslateY(
+    pane.layoutBounds!,
+    pane.usableHeight,
+    pane.scaleY,
+    pane.fitPads.top,
+  )
+  expect(pane.viewportOwner).toBe('host')
+  expect(pane.translateY).toBeCloseTo(expected, 6)
+})
+
 test("a folded tube map draws the cut's reference as merged nodes, and the rest as ticks or routes", async () => {
   const { pane } = await shownGraph({ paths: true })
   const labels = () =>

package/src/LinearGraphDisplay/configSchema.ts

@@ -38,6 +38,7 @@ export function configSchemaFactory() {
       color: {
         type: 'frozen',
         defaultValue: {},
+        plot: true,
       },
       /**
        * #slot
@@ -48,6 +49,7 @@ export function configSchemaFactory() {
       size: {
         type: 'frozen',
         defaultValue: { field: 'depth', value: 6 },
+        plot: true,
       },
       /**
        * #slot
@@ -61,6 +63,7 @@ export function configSchemaFactory() {
       layers: {
         type: 'frozen',
         defaultValue: {},
+        plot: true,
       },
       /**
        * #slot
@@ -71,6 +74,7 @@ export function configSchemaFactory() {
       facet: {
         type: 'frozen',
         defaultValue: {},
+        plot: true,
       },
       /**
        * #slot
@@ -79,6 +83,7 @@ export function configSchemaFactory() {
       rows: {
         type: 'frozen',
         defaultValue: {},
+        plot: true,
       },
       /**
        * #slot

package/src/version.ts

@@ -1 +1 @@
-export const version = '7.1.13'
+export const version = '7.2.0'