jbrowse-plugin-graphgenomeviewer 7.1.10 → 7.1.11

package/dist/chunks/{GbzBaseSyntenyAdapter-XXYOOWWV.js → GbzBaseSyntenyAdapter-2MA3I6BM.js}

@@ -1,2 +1,2 @@
-import{a as ae,b as re,c as de,d as oe,e as ie,f as H,g as se}from"./chunk-NWQ6NWI3.js";import{a as te}from"./chunk-KOB7YIMR.js";import{a as j,b as W,c as Z,d as u,e as M,f as $,g as U,h as k,i as z,k as X}from"./chunk-OBQFV4NL.js";import"./chunk-O7Y7LYN6.js";import{b as E,c as O}from"./chunk-N4WBX2OS.js";import"./chunk-BWP3XYKD.js";import"./chunk-T4HOC6O3.js";import{a as ne}from"./chunk-PFAHNHMM.js";import"./chunk-VDHDEEMF.js";import{a as V,c as L,m as ee}from"./chunk-HQVHNUXC.js";import"./chunk-YBLNN5FU.js";import"./chunk-MVVXRZXV.js";import{g as F,h as P,i as C}from"./chunk-GUXZESDR.js";import"./chunk-E7J6SB5P.js";import{d as G,g as Y,h as J,i as K}from"./chunk-IKJZPPOA.js";import"./chunk-7WIBGKBU.js";import{a as N}from"./chunk-OGQ6OQDN.js";import"./chunk-NDRLCGPC.js";import{e as D,o as I}from"./chunk-TENPGIPX.js";function A(n){let i=/\.gbz\.db$/i;return i.test(n)?n.replace(i,".haplotype-index.db"):void 0}function he(n){return J(n)&&A(Y(n))?K(n,i=>A(i)):void 0}function ue(n){return n instanceof Error&&(/\bHTTP 40[34]\b/.test(n.message)||n.code==="ENOENT")}async function ce(n,i){let t=he(n);if(!t)return{};try{return await N(t,i).stat(),{location:t}}catch(e){return ue(e)?{}:{unreadable:String(e)}}}var ge=5e3,ye=50*2**20,q=class extends Error{constructor(t){super(`this GAF is ${(t/2**20).toFixed(0)} MB without an index; bgzip it and index it with tabix -p gaf`);this.name="UnindexedGafTooLargeError"}};function be(n,i){if(n.length<=i)return n;let t=n.length/i;return Array.from({length:i},(e,a)=>n[Math.floor(a*t)])}var pe=(n,i)=>n.path.some(t=>i.has(t.name)),v=class{constructor(i,t){this.file=i;this.tabix=t;this.whole=L({setup:async({signal:i})=>{let{size:t}=await this.file.stat();if(t>ye)throw new q(t);let e=await this.file.readFile({signal:i}),a=new TextDecoder().decode(e[0]===31&&e[1]===139?await V(e):e);return O(a)}})}async readIndexed(i,t,e){let a=1/0,r=-1/0;for(let s of t){let c=Number(s);Number.isInteger(c)&&(a=Math.min(a,c),r=Math.max(r,c))}let o=[];return a<=r&&await i.getLines("{node}",a,r+1,{signal:e,lineCallback:s=>{let c=E(s);c&&pe(c,t)&&o.push(c)}}),o}async readsOver(i,{signal:t}={}){let e=this.tabix?await this.readIndexed(this.tabix,i,t):(await this.whole({signal:t})).filter(a=>pe(a,i));return{records:be(e,ge),total:e.length}}};var B=class extends Error{constructor(t){super(t===void 0?"no haplotype index is set, so the walks cannot be named; build one with gbz-haplotype-index (cargo install gbz-haplotype-index) and set it as haplotypeIndexLocation":`the haplotype index beside the graph database could not be checked (${t}), so the walks cannot be named; if it is there, reload to try again, or set haplotypeIndexLocation`);this.name="NoHaplotypeIndexError"}},_=class extends Error{constructor(t,e){super(`the graph is cut on its reference, ${e}; a window on ${t} has no reference coordinates to cut at. Open the graph from a ${e} view, and find this haplotype's lane there`);this.name="HaplotypeWindowError"}};function we(n,i){return`${u(n)}#${n.contig}@${i.start.node}.${i.start.offset}`}function xe({alignment:n,assemblyName:i,refName:t,lane:e}){let{refStart:a,refEnd:r,strand:o,cigar:s}=n;if(!(r<=a)){let{name:c,hapStart:p,hapEnd:l}=n,d=we(c,n),g={uniqueId:d,assemblyName:i,refName:t,start:a,end:r,type:"match",strand:o==="-"?-1:1,CIGAR:s,syntenyId:d,mate:{refName:c.contig,start:p,end:l,assemblyName:e}};return new ae(g)}}function Se({pair:n,lane:i,mateLane:t}){return se({target:{name:`${u(n.target)}#${n.target.contig}`,assemblyName:i,refName:n.target.contig,start:n.targetStart,end:n.targetEnd},query:{name:`${u(n.query)}#${n.query.contig}`,assemblyName:t,refName:n.query.contig,start:n.queryStart,end:n.queryEnd},strand:n.strand,cigar:n.cigar,matches:n.matches,columns:n.columns})}var Pe=12e4;function Ne(n,i){let t=new Map;for(let a of n)for(let{name:r,start:o,end:s}of a.walkSpans()){let c=u(r);if(i.has(c)){let p=`${c}#${r.contig}`,l=t.get(p);l?l.push([o,s]):t.set(p,[[o,s]])}}let e=0;for(let a of t.values()){a.sort((r,o)=>r[0]-o[0]);for(let r=1;r<a.length;r++){let o=a[r][0]-a[r-1][1];o>0&&o<=Pe&&(e=Math.max(e,o))}}return e}function T(n,i){return n instanceof Z&&(n.message=`Zoom in to about ${D(n.fitsBp)} to see ${i}`),n}var le=n=>({...n,start:Math.floor(n.start),end:Math.ceil(n.end)}),Q=class extends re{constructor(){super(...arguments);this.graph=L({label:"Opening pangenome database",setup:async()=>{let t=this.getConf("gbzDbLocation"),e=this.getConf("haplotypeIndexLocation"),a=G(e)?{location:e}:await ce(t,this.pluginManager),r=a.location,o=await W.open({source:N(t,this.pluginManager),haplotypeIndex:r?N(r,this.pluginManager):void 0}),s=this.getConf("assemblyNames")[0];if(s===void 0)throw new Error("GbzBaseSyntenyAdapter needs assemblyNames: its first entry is the assembly the reference sample is loaded as");let c=await $(o),p=U({configured:this.getConf("referenceSample"),anchorPrefix:P(this,s),referenceSamples:c});return{db:o,anchor:s,referenceSample:p,referenceSamples:c,unreadableIndex:a.unreadable}}});this.gaf=L({label:"Opening reads",setup:async()=>{let t=this.getConf("readsLocation"),e=this.getConf(["readsIndex","location"]);return G(t)?new v(N(t,this.pluginManager),G(e)?ee(this,["readsLocation"],["readsIndex"]):void 0):void 0}})}async referenceQuery(t,e){let{db:a,referenceSample:r}=await this.graph(e);return k(a,r,t)}async getHaplotypes(t={}){let{db:e,referenceSamples:a}=await this.graph(t),r=new Map;for(let o of await e.paths()){let s=u(o.name),c=r.get(s);c?c.contigs.includes(o.name.contig)||c.contigs.push(o.name.contig):r.set(s,{prefix:s,sample:o.name.sample,haplotype:o.name.haplotype,contigs:[o.name.contig],isReference:a.includes(o.name.sample)})}return[...r.values()]}async getHeader(t={}){let{anchor:e,referenceSample:a}=await this.graph(t),r=C(this),o=[];for(let s of await this.getHaplotypes(t))s.sample!==a&&o.push({name:H(r,s.prefix),label:s.prefix,group:s.sample});return{hasCoarseTier:!1,anchorAssemblyName:e,lanes:o}}async getRefNames(t={}){let{db:e,anchor:a,referenceSample:r}=await this.graph(t),{assemblyName:o}=t,s=o===a?void 0:P(this,o),c=(await e.paths()).filter(p=>o===a?p.isIndexed&&p.name.sample===r:F(u(p.name),s)).map(p=>p.name.contig);return[...new Set(c)]}keepPredicate(t,e){let a=t===void 0||t.length===0?void 0:t.map(r=>P(this,r));return a===void 0&&e===void 0?void 0:r=>M(r,a)&&(e===void 0||F(u(r),e))}async getSubgraph(t,e={}){let{signal:a}=e,{db:r,anchor:o,referenceSample:s,unreadableIndex:c}=await this.graph({signal:a}),{assemblyName:p,refName:l,start:d,end:g}=le(t);if(p!==o)throw new _(p,o);let y=await this.referenceQuery(l,{signal:a});if(!y)throw new Error(`${s} has no indexed path ${l} in this graph`);let w=this.keepPredicate(e.haplotypes);if(w!==void 0&&!r.hasHaplotypeIndex)throw new B(c);let f=await X(r,y,d,g,{context:this.getConf("context"),snarls:e.snarls??this.getConf("subgraphSnarls"),limit:this.getConf("nodeLimit"),signal:e.signal,keep:w}).catch(x=>{throw T(x,"the graph")});return typeof f=="string"?f:ne(f,{start:d,end:g},e.walkRows)}async getReads(t,e={}){let a=await this.gaf(e);return a?a.readsOver(new Set(t),e):{records:[],total:0}}async laneHaplotypes(t,e){let a=P(this,t);return(await this.getHaplotypes(e)).filter(r=>F(r.prefix,a))}async anchorFeatures(t,e){let{db:a}=await this.graph(e),{assemblyName:r,refName:o,start:s,end:c}=t,p=P(this,e.targetAssemblyName),l=C(this),d=this.keepPredicate(e.haplotypes,p),g=await this.referenceQuery(o,e),y=this.getConf("nodeLimit");return(g?await I(`Reading graph ${o}:${s.toLocaleString()}-${c.toLocaleString()}`,e.statusCallback,()=>a.getAlignments({path:g,start:s,end:c,context:this.getConf("context"),haplotypes:"all",limit:y,signal:e.signal,keep:d}).catch(f=>{throw T(z(f,y,c-s)??f,"lanes")})):[]).flatMap(f=>{let x=f.resolved?xe({alignment:f,assemblyName:r,refName:o,lane:H(l,u(f.name))}):void 0;return x===void 0?[]:[x]})}async pairFeatures(t,e,a){let{db:r}=await this.graph(a),{refName:o,start:s,end:c}=t,l=(await Promise.all(e.map(async m=>({pair:m,featureSide:await this.laneHaplotypes(m.queryAssemblyName,a),mateSide:await this.laneHaplotypes(m.targetAssemblyName,a)})))).filter(({featureSide:m,mateSide:h})=>m.length>0&&h.length>0),d=new Set(l.flatMap(({featureSide:m,mateSide:h})=>[...m,...h].map(u))),g=await this.referenceQuery(o,a),y=this.getConf("nodeLimit"),w=this.getConf("context"),f=(m,h)=>r.getSubgraphs({path:m,start:s,end:c,context:h,snarls:this.getConf("subgraphSnarls"),haplotypes:"all",limit:y,signal:a.signal,keep:S=>d.has(u(S))}),x=async m=>{let h=await f(m,w).catch(b=>{throw T(z(b,y,c-s)??b,"lanes")}),S=Ne(h,d),R=Math.ceil(S/2)+2e3;return S>0&&R>w?f(m,R).catch(b=>{if(b instanceof j)return h;throw b}):h};return(g&&l.length>0?await I(ie(e),a.statusCallback,()=>x(g)):[]).flatMap(m=>l.flatMap(({pair:h,featureSide:S,mateSide:R})=>S.flatMap(b=>R.flatMap(me=>m.pairAlignments({target:b,query:me,bases:!1}).map(fe=>Se({pair:fe,lane:h.queryAssemblyName,mateLane:h.targetAssemblyName}))))))}getFeatures(t,e={}){let a=le(t);return te(async r=>{let{db:o,anchor:s,unreadableIndex:c}=await this.graph(e);if(!o.hasHaplotypeIndex)throw new B(c);if(a.assemblyName===s){let p=oe(e),l=p.length>0?await this.pairFeatures(a,p,e):await this.anchorFeatures(a,e);for(let d of l)r.next(d)}r.complete()},e.signal)}};export{B as NoHaplotypeIndexError,de as PairTargetError,Q as default,Ne as widestWalkGap};
-//# sourceMappingURL=GbzBaseSyntenyAdapter-XXYOOWWV.js.map
+import{a as ae,b as re,c as de,d as oe,e as ie,f as H,g as se}from"./chunk-U4U5ZOCH.js";import{a as te}from"./chunk-KOB7YIMR.js";import{a as j,b as W,c as Z,d as u,e as M,f as $,g as U,h as k,i as z,k as X}from"./chunk-OBQFV4NL.js";import"./chunk-O7Y7LYN6.js";import{b as E,c as O}from"./chunk-N4WBX2OS.js";import"./chunk-BWP3XYKD.js";import"./chunk-T4HOC6O3.js";import{a as ne}from"./chunk-PFAHNHMM.js";import"./chunk-VDHDEEMF.js";import{a as V,c as L,m as ee}from"./chunk-EDSIYH4H.js";import"./chunk-YBLNN5FU.js";import"./chunk-MVVXRZXV.js";import{g as F,h as P,i as C}from"./chunk-GUXZESDR.js";import"./chunk-T4R3ZVEM.js";import{d as G,g as Y,h as J,i as K}from"./chunk-IKJZPPOA.js";import"./chunk-7WIBGKBU.js";import{a as N}from"./chunk-OGQ6OQDN.js";import"./chunk-NDRLCGPC.js";import{e as D,o as I}from"./chunk-TENPGIPX.js";function A(n){let i=/\.gbz\.db$/i;return i.test(n)?n.replace(i,".haplotype-index.db"):void 0}function he(n){return J(n)&&A(Y(n))?K(n,i=>A(i)):void 0}function ue(n){return n instanceof Error&&(/\bHTTP 40[34]\b/.test(n.message)||n.code==="ENOENT")}async function ce(n,i){let t=he(n);if(!t)return{};try{return await N(t,i).stat(),{location:t}}catch(e){return ue(e)?{}:{unreadable:String(e)}}}var ge=5e3,ye=50*2**20,q=class extends Error{constructor(t){super(`this GAF is ${(t/2**20).toFixed(0)} MB without an index; bgzip it and index it with tabix -p gaf`);this.name="UnindexedGafTooLargeError"}};function be(n,i){if(n.length<=i)return n;let t=n.length/i;return Array.from({length:i},(e,a)=>n[Math.floor(a*t)])}var pe=(n,i)=>n.path.some(t=>i.has(t.name)),v=class{constructor(i,t){this.file=i;this.tabix=t;this.whole=L({setup:async({signal:i})=>{let{size:t}=await this.file.stat();if(t>ye)throw new q(t);let e=await this.file.readFile({signal:i}),a=new TextDecoder().decode(e[0]===31&&e[1]===139?await V(e):e);return O(a)}})}async readIndexed(i,t,e){let a=1/0,r=-1/0;for(let s of t){let c=Number(s);Number.isInteger(c)&&(a=Math.min(a,c),r=Math.max(r,c))}let o=[];return a<=r&&await i.getLines("{node}",a,r+1,{signal:e,lineCallback:s=>{let c=E(s);c&&pe(c,t)&&o.push(c)}}),o}async readsOver(i,{signal:t}={}){let e=this.tabix?await this.readIndexed(this.tabix,i,t):(await this.whole({signal:t})).filter(a=>pe(a,i));return{records:be(e,ge),total:e.length}}};var B=class extends Error{constructor(t){super(t===void 0?"no haplotype index is set, so the walks cannot be named; build one with gbz-haplotype-index (cargo install gbz-haplotype-index) and set it as haplotypeIndexLocation":`the haplotype index beside the graph database could not be checked (${t}), so the walks cannot be named; if it is there, reload to try again, or set haplotypeIndexLocation`);this.name="NoHaplotypeIndexError"}},_=class extends Error{constructor(t,e){super(`the graph is cut on its reference, ${e}; a window on ${t} has no reference coordinates to cut at. Open the graph from a ${e} view, and find this haplotype's lane there`);this.name="HaplotypeWindowError"}};function we(n,i){return`${u(n)}#${n.contig}@${i.start.node}.${i.start.offset}`}function xe({alignment:n,assemblyName:i,refName:t,lane:e}){let{refStart:a,refEnd:r,strand:o,cigar:s}=n;if(!(r<=a)){let{name:c,hapStart:p,hapEnd:l}=n,d=we(c,n),g={uniqueId:d,assemblyName:i,refName:t,start:a,end:r,type:"match",strand:o==="-"?-1:1,CIGAR:s,syntenyId:d,mate:{refName:c.contig,start:p,end:l,assemblyName:e}};return new ae(g)}}function Se({pair:n,lane:i,mateLane:t}){return se({target:{name:`${u(n.target)}#${n.target.contig}`,assemblyName:i,refName:n.target.contig,start:n.targetStart,end:n.targetEnd},query:{name:`${u(n.query)}#${n.query.contig}`,assemblyName:t,refName:n.query.contig,start:n.queryStart,end:n.queryEnd},strand:n.strand,cigar:n.cigar,matches:n.matches,columns:n.columns})}var Pe=12e4;function Ne(n,i){let t=new Map;for(let a of n)for(let{name:r,start:o,end:s}of a.walkSpans()){let c=u(r);if(i.has(c)){let p=`${c}#${r.contig}`,l=t.get(p);l?l.push([o,s]):t.set(p,[[o,s]])}}let e=0;for(let a of t.values()){a.sort((r,o)=>r[0]-o[0]);for(let r=1;r<a.length;r++){let o=a[r][0]-a[r-1][1];o>0&&o<=Pe&&(e=Math.max(e,o))}}return e}function T(n,i){return n instanceof Z&&(n.message=`Zoom in to about ${D(n.fitsBp)} to see ${i}`),n}var le=n=>({...n,start:Math.floor(n.start),end:Math.ceil(n.end)}),Q=class extends re{constructor(){super(...arguments);this.graph=L({label:"Opening pangenome database",setup:async()=>{let t=this.getConf("gbzDbLocation"),e=this.getConf("haplotypeIndexLocation"),a=G(e)?{location:e}:await ce(t,this.pluginManager),r=a.location,o=await W.open({source:N(t,this.pluginManager),haplotypeIndex:r?N(r,this.pluginManager):void 0}),s=this.getConf("assemblyNames")[0];if(s===void 0)throw new Error("GbzBaseSyntenyAdapter needs assemblyNames: its first entry is the assembly the reference sample is loaded as");let c=await $(o),p=U({configured:this.getConf("referenceSample"),anchorPrefix:P(this,s),referenceSamples:c});return{db:o,anchor:s,referenceSample:p,referenceSamples:c,unreadableIndex:a.unreadable}}});this.gaf=L({label:"Opening reads",setup:async()=>{let t=this.getConf("readsLocation"),e=this.getConf(["readsIndex","location"]);return G(t)?new v(N(t,this.pluginManager),G(e)?ee(this,["readsLocation"],["readsIndex"]):void 0):void 0}})}async referenceQuery(t,e){let{db:a,referenceSample:r}=await this.graph(e);return k(a,r,t)}async getHaplotypes(t={}){let{db:e,referenceSamples:a}=await this.graph(t),r=new Map;for(let o of await e.paths()){let s=u(o.name),c=r.get(s);c?c.contigs.includes(o.name.contig)||c.contigs.push(o.name.contig):r.set(s,{prefix:s,sample:o.name.sample,haplotype:o.name.haplotype,contigs:[o.name.contig],isReference:a.includes(o.name.sample)})}return[...r.values()]}async getHeader(t={}){let{anchor:e,referenceSample:a}=await this.graph(t),r=C(this),o=[];for(let s of await this.getHaplotypes(t))s.sample!==a&&o.push({name:H(r,s.prefix),label:s.prefix,group:s.sample});return{hasCoarseTier:!1,anchorAssemblyName:e,lanes:o}}async getRefNames(t={}){let{db:e,anchor:a,referenceSample:r}=await this.graph(t),{assemblyName:o}=t,s=o===a?void 0:P(this,o),c=(await e.paths()).filter(p=>o===a?p.isIndexed&&p.name.sample===r:F(u(p.name),s)).map(p=>p.name.contig);return[...new Set(c)]}keepPredicate(t,e){let a=t===void 0||t.length===0?void 0:t.map(r=>P(this,r));return a===void 0&&e===void 0?void 0:r=>M(r,a)&&(e===void 0||F(u(r),e))}async getSubgraph(t,e={}){let{signal:a}=e,{db:r,anchor:o,referenceSample:s,unreadableIndex:c}=await this.graph({signal:a}),{assemblyName:p,refName:l,start:d,end:g}=le(t);if(p!==o)throw new _(p,o);let y=await this.referenceQuery(l,{signal:a});if(!y)throw new Error(`${s} has no indexed path ${l} in this graph`);let w=this.keepPredicate(e.haplotypes);if(w!==void 0&&!r.hasHaplotypeIndex)throw new B(c);let f=await X(r,y,d,g,{context:this.getConf("context"),snarls:e.snarls??this.getConf("subgraphSnarls"),limit:this.getConf("nodeLimit"),signal:e.signal,keep:w}).catch(x=>{throw T(x,"the graph")});return typeof f=="string"?f:ne(f,{start:d,end:g},e.walkRows)}async getReads(t,e={}){let a=await this.gaf(e);return a?a.readsOver(new Set(t),e):{records:[],total:0}}async laneHaplotypes(t,e){let a=P(this,t);return(await this.getHaplotypes(e)).filter(r=>F(r.prefix,a))}async anchorFeatures(t,e){let{db:a}=await this.graph(e),{assemblyName:r,refName:o,start:s,end:c}=t,p=P(this,e.targetAssemblyName),l=C(this),d=this.keepPredicate(e.haplotypes,p),g=await this.referenceQuery(o,e),y=this.getConf("nodeLimit");return(g?await I(`Reading graph ${o}:${s.toLocaleString()}-${c.toLocaleString()}`,e.statusCallback,()=>a.getAlignments({path:g,start:s,end:c,context:this.getConf("context"),haplotypes:"all",limit:y,signal:e.signal,keep:d}).catch(f=>{throw T(z(f,y,c-s)??f,"lanes")})):[]).flatMap(f=>{let x=f.resolved?xe({alignment:f,assemblyName:r,refName:o,lane:H(l,u(f.name))}):void 0;return x===void 0?[]:[x]})}async pairFeatures(t,e,a){let{db:r}=await this.graph(a),{refName:o,start:s,end:c}=t,l=(await Promise.all(e.map(async m=>({pair:m,featureSide:await this.laneHaplotypes(m.queryAssemblyName,a),mateSide:await this.laneHaplotypes(m.targetAssemblyName,a)})))).filter(({featureSide:m,mateSide:h})=>m.length>0&&h.length>0),d=new Set(l.flatMap(({featureSide:m,mateSide:h})=>[...m,...h].map(u))),g=await this.referenceQuery(o,a),y=this.getConf("nodeLimit"),w=this.getConf("context"),f=(m,h)=>r.getSubgraphs({path:m,start:s,end:c,context:h,snarls:this.getConf("subgraphSnarls"),haplotypes:"all",limit:y,signal:a.signal,keep:S=>d.has(u(S))}),x=async m=>{let h=await f(m,w).catch(b=>{throw T(z(b,y,c-s)??b,"lanes")}),S=Ne(h,d),R=Math.ceil(S/2)+2e3;return S>0&&R>w?f(m,R).catch(b=>{if(b instanceof j)return h;throw b}):h};return(g&&l.length>0?await I(ie(e),a.statusCallback,()=>x(g)):[]).flatMap(m=>l.flatMap(({pair:h,featureSide:S,mateSide:R})=>S.flatMap(b=>R.flatMap(me=>m.pairAlignments({target:b,query:me,bases:!1}).map(fe=>Se({pair:fe,lane:h.queryAssemblyName,mateLane:h.targetAssemblyName}))))))}getFeatures(t,e={}){let a=le(t);return te(async r=>{let{db:o,anchor:s,unreadableIndex:c}=await this.graph(e);if(!o.hasHaplotypeIndex)throw new B(c);if(a.assemblyName===s){let p=oe(e),l=p.length>0?await this.pairFeatures(a,p,e):await this.anchorFeatures(a,e);for(let d of l)r.next(d)}r.complete()},e.signal)}};export{B as NoHaplotypeIndexError,de as PairTargetError,Q as default,Ne as widestWalkGap};
+//# sourceMappingURL=GbzBaseSyntenyAdapter-2MA3I6BM.js.map

package/dist/chunks/{GraphGenomeView-GKL2VBJI.js → GraphGenomeView-4O5F5I37.js}

@@ -1,4 +1,4 @@
-import{a as C}from"./chunk-AQQ4HHN3.js";import"./chunk-FME624X3.js";import"./chunk-K7ZCYIXI.js";import"./chunk-UD4NSJBX.js";import{n as d}from"./chunk-HLKZCTQ3.js";import"./chunk-EEUKM4TK.js";import"./chunk-III4GT4G.js";import"./chunk-CWNJR5XB.js";import"./chunk-PA4HKAUJ.js";import"./chunk-6WA6WF6A.js";import"./chunk-O7Y7LYN6.js";import"./chunk-N4WBX2OS.js";import"./chunk-BWP3XYKD.js";import"./chunk-PFAHNHMM.js";import"./chunk-VDHDEEMF.js";import"./chunk-YBLNN5FU.js";import"./chunk-MVVXRZXV.js";import"./chunk-GUXZESDR.js";import"./chunk-IKJZPPOA.js";import"./chunk-NDRLCGPC.js";import"./chunk-TENPGIPX.js";import{h as L}from"./chunk-YU7T5WOQ.js";import{A as l,F as G,H as p,e as s,j as v,o as n,x as y}from"./chunk-UGCNPRKC.js";import{a as h,b as e,c as r,d as i}from"./chunk-JMBDTNUR.js";var N=d()({paper:{padding:16,margin:8,maxWidth:560,marginInline:"auto",display:"flex",flexDirection:"column",gap:12},row:{display:"flex",alignItems:"center",justifyContent:"space-between",gap:8}}),S=i(function({model:a}){let{classes:t}=N();return!a.error&&!a.loadCanceled?r(l,{className:t.paper,"data-testid":"graph-genome-loading",children:[r("div",{className:t.row,children:[e(v,{variant:"h6",message:a.statusMessage||void 0}),a.canCancelLoad?e(n,{size:"small","data-testid":"graph-genome-cancel",onClick:()=>{a.cancelLoad()},children:"Cancel"}):null]}),e(y,{variant:"indeterminate"})]}):a.error?e(l,{className:t.paper,children:e(s,{error:a.error,onReset:()=>{a.retryLoad()}})}):e(l,{className:t.paper,"data-testid":"graph-genome-load-canceled",children:r("div",{className:t.row,children:[e(p,{variant:"h6",children:"Loading canceled"}),e(n,{variant:"contained",size:"small","data-testid":"graph-genome-retry",onClick:()=>{a.retryLoad()},children:"Retry"})]})})}),f=S;var T=`H	VN:Z:1.0
+import{a as C}from"./chunk-44HZPYGC.js";import"./chunk-FME624X3.js";import"./chunk-UFQTIWSN.js";import"./chunk-N5GYTUIL.js";import{n as d}from"./chunk-HLKZCTQ3.js";import"./chunk-WGVATZLM.js";import"./chunk-III4GT4G.js";import"./chunk-CWNJR5XB.js";import"./chunk-PA4HKAUJ.js";import"./chunk-6WA6WF6A.js";import"./chunk-O7Y7LYN6.js";import"./chunk-N4WBX2OS.js";import"./chunk-BWP3XYKD.js";import"./chunk-PFAHNHMM.js";import"./chunk-VDHDEEMF.js";import"./chunk-YBLNN5FU.js";import"./chunk-MVVXRZXV.js";import"./chunk-GUXZESDR.js";import"./chunk-IKJZPPOA.js";import"./chunk-NDRLCGPC.js";import"./chunk-TENPGIPX.js";import{h as L}from"./chunk-YU7T5WOQ.js";import{A as l,F as G,H as p,e as s,j as v,o as n,x as y}from"./chunk-UGCNPRKC.js";import{a as h,b as e,c as r,d as i}from"./chunk-JMBDTNUR.js";var N=d()({paper:{padding:16,margin:8,maxWidth:560,marginInline:"auto",display:"flex",flexDirection:"column",gap:12},row:{display:"flex",alignItems:"center",justifyContent:"space-between",gap:8}}),S=i(function({model:a}){let{classes:t}=N();return!a.error&&!a.loadCanceled?r(l,{className:t.paper,"data-testid":"graph-genome-loading",children:[r("div",{className:t.row,children:[e(v,{variant:"h6",message:a.statusMessage||void 0}),a.canCancelLoad?e(n,{size:"small","data-testid":"graph-genome-cancel",onClick:()=>{a.cancelLoad()},children:"Cancel"}):null]}),e(y,{variant:"indeterminate"})]}):a.error?e(l,{className:t.paper,children:e(s,{error:a.error,onReset:()=>{a.retryLoad()}})}):e(l,{className:t.paper,"data-testid":"graph-genome-load-canceled",children:r("div",{className:t.row,children:[e(p,{variant:"h6",children:"Loading canceled"}),e(n,{variant:"contained",size:"small","data-testid":"graph-genome-retry",onClick:()=>{a.retryLoad()},children:"Retry"})]})})}),f=S;var T=`H	VN:Z:1.0
 S	1	ACGT
 S	2	GGCC
 S	3	TTAA
@@ -7,4 +7,4 @@ L	1	+	2	+	0M
 L	1	+	3	+	0M
 L	2	+	4	+	0M
 L	3	+	4	+	0M`,E=d()({column:{display:"flex",flexDirection:"column",gap:8},rowEnd:{display:"flex",gap:8,alignItems:"flex-end"},rowCenter:{display:"flex",gap:8,alignItems:"center"},flex1:{flex:1},paper:{padding:16,margin:8,maxWidth:560,marginInline:"auto"},header:{marginBottom:12},footer:{marginTop:12,display:"flex",justifyContent:"flex-end"}}),F=i(function({model:a}){let{classes:t}=E(),[m,w]=L("");function u(){let o=m.trim();o&&a.openGfaLocation({uri:o,locationType:"UriLocation"})}function M(o){let c=o.target.files?.[0];o.target.value="",c&&a.loadGFAFile(c,c.name)}return r(l,{className:t.paper,children:[e("div",{className:t.header,children:e(p,{variant:"h6",children:"Load a GFA graph"})}),r("div",{className:t.column,children:[r("div",{className:t.rowCenter,children:[r(n,{variant:"outlined",component:"label",size:"small",children:["Choose file",e("input",{type:"file",accept:".gfa,.gfa1,.gfa2,.gz",hidden:!0,onChange:o=>{M(o)}})]}),e(p,{variant:"caption",color:"text.secondary",children:"Whole-file GFA; best for small/medium graphs."})]}),r("div",{className:t.rowEnd,children:[e(G,{size:"small",label:"URL",placeholder:"https://example.com/graph.gfa",value:m,onChange:o=>{w(o.target.value)},onKeyDown:o=>{o.key==="Enter"&&u()},className:t.flex1}),e(n,{variant:"contained",onClick:()=>{u()},disabled:!m.trim(),children:"Open"})]})]}),e("div",{className:t.footer,children:e(n,{size:"small",onClick:()=>{a.loadGFA(T,"Example graph")},children:"Load 4-node example"})}),a.error?e(s,{error:a.error}):null]})}),x=F;var B=i(function({model:a}){return a.hasGraph?e(C,{model:a}):a.canRetryLoad?e(f,{model:a}):r(h,{children:[a.isLoading?e(f,{model:a}):null,e("div",{hidden:a.isLoading,children:e(x,{model:a})})]})}),q=B;export{q as default};
-//# sourceMappingURL=GraphGenomeView-GKL2VBJI.js.map
+//# sourceMappingURL=GraphGenomeView-4O5F5I37.js.map

package/dist/chunks/LinearGraphDisplay-Z33PVCJL.js

@@ -0,0 +1,2 @@
+import{a as h}from"./chunk-44HZPYGC.js";import"./chunk-FME624X3.js";import"./chunk-UFQTIWSN.js";import"./chunk-N5GYTUIL.js";import"./chunk-HLKZCTQ3.js";import"./chunk-WGVATZLM.js";import"./chunk-III4GT4G.js";import"./chunk-CWNJR5XB.js";import"./chunk-PA4HKAUJ.js";import"./chunk-6WA6WF6A.js";import"./chunk-O7Y7LYN6.js";import"./chunk-N4WBX2OS.js";import"./chunk-BWP3XYKD.js";import"./chunk-PFAHNHMM.js";import"./chunk-VDHDEEMF.js";import"./chunk-YBLNN5FU.js";import"./chunk-MVVXRZXV.js";import"./chunk-GUXZESDR.js";import"./chunk-IKJZPPOA.js";import"./chunk-NDRLCGPC.js";import"./chunk-TENPGIPX.js";import{h as T}from"./chunk-YU7T5WOQ.js";import"./chunk-UGCNPRKC.js";import{b as e,c as d,d as i}from"./chunk-JMBDTNUR.js";var n=JBrowseExports["@jbrowse/display-kit/DisplayBackgroundProgress"];var f=n&&n.__esModule?n.default:n;var l=JBrowseExports["@jbrowse/display-kit/DisplayErrorBar"];var v=l&&l.__esModule?l.default:l;var p=JBrowseExports["@jbrowse/display-kit/DisplayLoadingOverlay"];var O=p&&p.__esModule?p.default:p;var c=JBrowseExports["@jbrowse/display-kit/TooLargeMessage"];var L=c&&c.__esModule?c.default:c;var s=JBrowseExports["@jbrowse/display-ui"],u=r=>s!=null&&r in Object(s)?s[r]:Object.assign(function(){throw new Error("This JBrowse does not provide '"+r+"' from '@jbrowse/display-ui' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse")},{jbrowseHostMissing:r});var w=u("BottomRightCornerContext");var g=u("TrackOverlayPortal");var C=u("useChromeOverlayOverride");var U=s&&s.__esModule?s.default:s;var k={TooLarge:L,ErrorBar:v,Loading:O,BackgroundProgress:f},m="Zoom in to see features, or force load this track for the rest of the session (may be slow)",M="Force load this track for the rest of the session (may be slow)";function H(r){let o=r.error??r.renderError,t=o instanceof Error&&o.regionTooLarge===!0;return{error:{error:o,onRetry:t?void 0:()=>{r.reload()}},tooLarge:{message:[r.regionTooLargeReason,r.zoomCanReleaseGate?m:M].filter(Boolean).join(". "),onForceLoad:()=>{r.forceLoad()}},loading:{message:r.statusMessage,progress:r.statusProgress,canceled:r.fetchCanceled,onCancel:()=>{r.cancelFetchByUser()},onRetry:()=>{r.reload()}},background:{message:r.statusMessage,progress:r.statusProgress}}}var _=i(function({model:o,phase:t,drawn:x,testid:E,style:B,children:G,...S}){let{TooLarge:b,ErrorBar:P,Loading:A,BackgroundProgress:D}=C()??k,[R,I]=T(null),a=H(o),y={...S,"data-testid":E,"data-display-id":o.configuration.displayId,"data-display-drawn":x,"data-display-phase":t};return t==="tooLarge"?e("div",{style:{display:"contents"},...y,children:e(g,{children:e("div",{style:{pointerEvents:"auto"},children:e(b,{model:o,...a.tooLarge})})})}):d("div",{style:{position:"relative",height:o.height,...B},...y,children:[e(w,{value:R,children:G}),d(g,{children:[t==="error"?e(P,{model:o,visible:!0,...a.error}):null,e(A,{model:o,...a.loading,visible:t==="loading"||t==="canceled",immediate:!x}),e("div",{ref:I,style:{position:"absolute",bottom:2,right:2,display:"flex",flexDirection:"column",alignItems:"flex-end",gap:4,pointerEvents:"none"},children:t==="ready"&&o.statusMessage?e(D,{model:o,visible:!0,...a.background}):null})]})]})});var j=i(function({model:o}){return e(_,{model:o,phase:o.displayPhase,drawn:o.painted&&o.geometryPainted,testid:"linear-graph-display","data-layout":o.chosenLayoutMode,"data-cut-tier":o.cutTier,"data-recuts":o.recuts,"data-node-count":o.hasGraph?o.nodeCount:void 0,"data-loading":o.isLoading?"":void 0,style:{width:o.paneWidth,height:o.height,overflow:"hidden"},children:e(h,{model:o,ownChrome:!1})})}),so=j;export{so as default};
+//# sourceMappingURL=LinearGraphDisplay-Z33PVCJL.js.map

package/dist/chunks/{LinearGraphDisplay-KGCPGRYY.js.map → LinearGraphDisplay-Z33PVCJL.js.map}

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["host:@jbrowse/display-kit/DisplayBackgroundProgress", "host:@jbrowse/display-kit/DisplayErrorBar", "host:@jbrowse/display-kit/DisplayLoadingOverlay", "host:@jbrowse/display-kit/TooLargeMessage", "host:@jbrowse/display-ui", "../../src/LinearGraphDisplay/components/GraphStatusChrome.tsx", "../../src/LinearGraphDisplay/components/LinearGraphDisplay.tsx"],
-  "sourcesContent": ["const host = JBrowseExports[\"@jbrowse/display-kit/DisplayBackgroundProgress\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-kit/DisplayBackgroundProgress\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport default host && host.__esModule ? host.default : host", "const host = JBrowseExports[\"@jbrowse/display-kit/DisplayErrorBar\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-kit/DisplayErrorBar\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport default host && host.__esModule ? host.default : host", "const host = JBrowseExports[\"@jbrowse/display-kit/DisplayLoadingOverlay\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-kit/DisplayLoadingOverlay\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport default host && host.__esModule ? host.default : host", "const host = JBrowseExports[\"@jbrowse/display-kit/TooLargeMessage\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-kit/TooLargeMessage\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport default host && host.__esModule ? host.default : host", "const host = JBrowseExports[\"@jbrowse/display-ui\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-ui\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport const AXIS_GUTTER_WIDTH_PX = /* @__PURE__ */ read(\"AXIS_GUTTER_WIDTH_PX\")\nexport const AXIS_RIGHT_INSET_PX = /* @__PURE__ */ read(\"AXIS_RIGHT_INSET_PX\")\nexport const AxisCaption = /* @__PURE__ */ read(\"AxisCaption\")\nexport const AxisCaptionOverlay = /* @__PURE__ */ read(\"AxisCaptionOverlay\")\nexport const AxisGutter = /* @__PURE__ */ read(\"AxisGutter\")\nexport const BOTTOM_RIGHT_CONTROLS_ORDER = /* @__PURE__ */ read(\"BOTTOM_RIGHT_CONTROLS_ORDER\")\nexport const BottomRightCornerContext = /* @__PURE__ */ read(\"BottomRightCornerContext\")\nexport const COMPACT_AXIS_HEIGHT = /* @__PURE__ */ read(\"COMPACT_AXIS_HEIGHT\")\nexport const CrossHatchLines = /* @__PURE__ */ read(\"CrossHatchLines\")\nexport const CrossHatches = /* @__PURE__ */ read(\"CrossHatches\")\nexport const DEFAULT_RULE_COLOR = /* @__PURE__ */ read(\"DEFAULT_RULE_COLOR\")\nexport const DisplayChromeOverlayProvider = /* @__PURE__ */ read(\"DisplayChromeOverlayProvider\")\nexport const DisplayUIProvider = /* @__PURE__ */ read(\"DisplayUIProvider\")\nexport const FLOATING_LEGEND_RIGHT_PX = /* @__PURE__ */ read(\"FLOATING_LEGEND_RIGHT_PX\")\nexport const FLOATING_LEGEND_TOP_PX = /* @__PURE__ */ read(\"FLOATING_LEGEND_TOP_PX\")\nexport const FloatingLegend = /* @__PURE__ */ read(\"FloatingLegend\")\nexport const FloatingSvgOverlay = /* @__PURE__ */ read(\"FloatingSvgOverlay\")\nexport const FloatingText = /* @__PURE__ */ read(\"FloatingText\")\nexport const PointerLayer = /* @__PURE__ */ read(\"PointerLayer\")\nexport const SCORE_CAPTION_HEIGHT = /* @__PURE__ */ read(\"SCORE_CAPTION_HEIGHT\")\nexport const ScoreDomainCaption = /* @__PURE__ */ read(\"ScoreDomainCaption\")\nexport const ScoreRuleLines = /* @__PURE__ */ read(\"ScoreRuleLines\")\nexport const ScoreRules = /* @__PURE__ */ read(\"ScoreRules\")\nexport const SvgHaloText = /* @__PURE__ */ read(\"SvgHaloText\")\nexport const TEXT_BASELINE_RATIO = /* @__PURE__ */ read(\"TEXT_BASELINE_RATIO\")\nexport const Tooltip = /* @__PURE__ */ read(\"Tooltip\")\nexport const TrackControlProvider = /* @__PURE__ */ read(\"TrackControlProvider\")\nexport const TrackOverlayContext = /* @__PURE__ */ read(\"TrackOverlayContext\")\nexport const TrackOverlayPortal = /* @__PURE__ */ read(\"TrackOverlayPortal\")\nexport const TrackOverlaySlot = /* @__PURE__ */ read(\"TrackOverlaySlot\")\nexport const YSCALEBAR_LABEL_OFFSET = /* @__PURE__ */ read(\"YSCALEBAR_LABEL_OFFSET\")\nexport const YScaleBar = /* @__PURE__ */ read(\"YScaleBar\")\nexport const YScaleBarOverlay = /* @__PURE__ */ read(\"YScaleBarOverlay\")\nexport const axisDrawn = /* @__PURE__ */ read(\"axisDrawn\")\nexport const axisGutterLeft = /* @__PURE__ */ read(\"axisGutterLeft\")\nexport const axisGutterWidth = /* @__PURE__ */ read(\"axisGutterWidth\")\nexport const axisPlotBox = /* @__PURE__ */ read(\"axisPlotBox\")\nexport const clampStrokeInsideAxis = /* @__PURE__ */ read(\"clampStrokeInsideAxis\")\nexport const cullOverlappingLabels = /* @__PURE__ */ read(\"cullOverlappingLabels\")\nexport const formatScore = /* @__PURE__ */ read(\"formatScore\")\nexport const isLiveModel = /* @__PURE__ */ read(\"isLiveModel\")\nexport const leftAxisGutterWidth = /* @__PURE__ */ read(\"leftAxisGutterWidth\")\nexport const plainChromeOverlays = /* @__PURE__ */ read(\"plainChromeOverlays\")\nexport const plainTrackControl = /* @__PURE__ */ read(\"plainTrackControl\")\nexport const resolveOverlays = /* @__PURE__ */ read(\"resolveOverlays\")\nexport const scoreToAxisY = /* @__PURE__ */ read(\"scoreToAxisY\")\nexport const textHalo = /* @__PURE__ */ read(\"textHalo\")\nexport const tooLargeBannerText = /* @__PURE__ */ read(\"tooLargeBannerText\")\nexport const useChromeOverlayOverride = /* @__PURE__ */ read(\"useChromeOverlayOverride\")\nexport const useTooltip = /* @__PURE__ */ read(\"useTooltip\")\nexport const useTrackControlMenu = /* @__PURE__ */ read(\"useTrackControlMenu\")\nexport const useTrackControlOverride = /* @__PURE__ */ read(\"useTrackControlOverride\")\nexport default host && host.__esModule ? host.default : host", "import { useState } from 'react'\nimport type { CSSProperties, ReactNode } from 'react'\n\nimport DisplayBackgroundProgress from '@jbrowse/display-kit/DisplayBackgroundProgress'\nimport DisplayErrorBar from '@jbrowse/display-kit/DisplayErrorBar'\nimport DisplayLoadingOverlay from '@jbrowse/display-kit/DisplayLoadingOverlay'\nimport TooLargeMessage from '@jbrowse/display-kit/TooLargeMessage'\nimport {\n  BottomRightCornerContext,\n  TrackOverlayPortal,\n  useChromeOverlayOverride,\n} from '@jbrowse/display-ui'\n\nimport type { LinearGraphDisplayModel } from '../model'\nimport type { DisplayStatusPhase } from '@jbrowse/render-core/displayPhase'\n\nconst muiOverlays = {\n  TooLarge: TooLargeMessage,\n  ErrorBar: DisplayErrorBar,\n  Loading: DisplayLoadingOverlay,\n  BackgroundProgress: DisplayBackgroundProgress,\n}\n\n/**\n * The status chrome of a display that owns its canvas: the zoom-in notice in\n * place of the display, and the error bar, loading overlay and progress chip\n * over it in the track's overlay layer. Core's `DisplayStatusChrome` drew this\n * until jbrowse-web main removed it on 2026-10-08 (d8db736896), and its named\n * import came back undefined there, failing the track with React error #130.\n * Built here from the overlays every host from 5.0.0-beta.11 serves.\n */\nexport default function GraphStatusChrome({\n  model,\n  phase,\n  drawn,\n  testid,\n  style,\n  children,\n  ...dataProps\n}: {\n  model: LinearGraphDisplayModel\n  phase: DisplayStatusPhase\n  drawn: boolean\n  testid: string\n  style?: CSSProperties\n  children: ReactNode\n} & Record<`data-${string}`, unknown>) {\n  const { TooLarge, ErrorBar, Loading, BackgroundProgress } =\n    useChromeOverlayOverride() ?? muiOverlays\n  const [corner, setCorner] = useState<HTMLDivElement | null>(null)\n  const attributes = {\n    ...dataProps,\n    'data-testid': testid,\n    'data-display-id': model.configuration.displayId,\n    'data-display-drawn': drawn,\n    'data-display-phase': phase,\n  }\n  if (phase === 'tooLarge') {\n    return (\n      <div style={{ display: 'contents' }} {...attributes}>\n        <TrackOverlayPortal>\n          <div style={{ pointerEvents: 'auto' }}>\n            <TooLarge model={model} />\n          </div>\n        </TrackOverlayPortal>\n      </div>\n    )\n  }\n  return (\n    <div\n      style={{ position: 'relative', height: model.height, ...style }}\n      {...attributes}\n    >\n      <BottomRightCornerContext value={corner}>\n        {children}\n      </BottomRightCornerContext>\n      <TrackOverlayPortal>\n        <ErrorBar model={model} visible={phase === 'error'} />\n        <Loading\n          model={model}\n          visible={phase === 'loading' || phase === 'canceled'}\n          immediate={!drawn}\n        />\n        <div\n          ref={setCorner}\n          style={{\n            position: 'absolute',\n            bottom: 2,\n            right: 2,\n            display: 'flex',\n            flexDirection: 'column',\n            alignItems: 'flex-end',\n            gap: 4,\n            pointerEvents: 'none',\n          }}\n        >\n          <BackgroundProgress model={model} visible={phase === 'ready'} />\n        </div>\n      </TrackOverlayPortal>\n    </div>\n  )\n}\n", "import { observer } from 'mobx-react'\n\nimport GraphStatusChrome from './GraphStatusChrome'\nimport GraphCanvas from '../../GraphGenomeView/components/GraphCanvas'\n\nimport type { LinearGraphDisplayModel } from '../model'\n\nconst LinearGraphDisplay = observer(function LinearGraphDisplay({\n  model,\n}: {\n  model: LinearGraphDisplayModel\n}) {\n  return (\n    <GraphStatusChrome\n      model={model}\n      phase={model.displayPhase}\n      drawn={model.painted && model.geometryPainted}\n      testid=\"linear-graph-display\"\n      data-layout={model.chosenLayoutMode}\n      data-cut-tier={model.cutTier}\n      data-recuts={model.recuts}\n      data-node-count={model.hasGraph ? model.nodeCount : undefined}\n      data-loading={model.isLoading ? '' : undefined}\n      style={{\n        width: model.paneWidth,\n        height: model.height,\n        overflow: 'hidden',\n      }}\n    >\n      <GraphCanvas model={model} ownChrome={false} />\n    </GraphStatusChrome>\n  )\n})\n\nexport default LinearGraphDisplay\n"],
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-  "names": ["host", "DisplayBackgroundProgress_default", "host", "host", "DisplayErrorBar_default", "host", "host", "DisplayLoadingOverlay_default", "host", "host", "TooLargeMessage_default", "host", "host", "read", "name", "BottomRightCornerContext", "read", "TrackOverlayPortal", "read", "useChromeOverlayOverride", "read", "display_ui_default", "host", "muiOverlays", "TooLargeMessage_default", "DisplayErrorBar_default", "DisplayLoadingOverlay_default", "DisplayBackgroundProgress_default", "GraphStatusChrome", "model", "phase", "drawn", "testid", "style", "children", "dataProps", "TooLarge", "ErrorBar", "Loading", "BackgroundProgress", "useChromeOverlayOverride", "corner", "setCorner", "useState", "attributes", "jsx", "TrackOverlayPortal", "jsxs", "BottomRightCornerContext", "LinearGraphDisplay", "observer", "model", "jsx", "GraphStatusChrome", "GraphCanvas_default", "LinearGraphDisplay_default"]
+  "sourcesContent": ["const host = JBrowseExports[\"@jbrowse/display-kit/DisplayBackgroundProgress\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-kit/DisplayBackgroundProgress\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport default host && host.__esModule ? host.default : host", "const host = JBrowseExports[\"@jbrowse/display-kit/DisplayErrorBar\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-kit/DisplayErrorBar\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport default host && host.__esModule ? host.default : host", "const host = JBrowseExports[\"@jbrowse/display-kit/DisplayLoadingOverlay\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-kit/DisplayLoadingOverlay\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport default host && host.__esModule ? host.default : host", "const host = JBrowseExports[\"@jbrowse/display-kit/TooLargeMessage\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-kit/TooLargeMessage\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport default host && host.__esModule ? host.default : host", "const host = JBrowseExports[\"@jbrowse/display-ui\"]\nconst read = name =>\n  host != null && name in Object(host)\n    ? host[name]\n    : Object.assign(\n        function () {\n          throw new Error(\n            \"This JBrowse does not provide '\" + name + \"' from '\" + \"@jbrowse/display-ui\" + \"' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse\",\n          )\n        },\n        { jbrowseHostMissing: name },\n      )\nexport const AXIS_GUTTER_WIDTH_PX = /* @__PURE__ */ read(\"AXIS_GUTTER_WIDTH_PX\")\nexport const AXIS_RIGHT_INSET_PX = /* @__PURE__ */ read(\"AXIS_RIGHT_INSET_PX\")\nexport const AxisCaption = /* @__PURE__ */ read(\"AxisCaption\")\nexport const AxisCaptionOverlay = /* @__PURE__ */ read(\"AxisCaptionOverlay\")\nexport const AxisGutter = /* @__PURE__ */ read(\"AxisGutter\")\nexport const BOTTOM_RIGHT_CONTROLS_ORDER = /* @__PURE__ */ read(\"BOTTOM_RIGHT_CONTROLS_ORDER\")\nexport const BottomRightCornerContext = /* @__PURE__ */ read(\"BottomRightCornerContext\")\nexport const COMPACT_AXIS_HEIGHT = /* @__PURE__ */ read(\"COMPACT_AXIS_HEIGHT\")\nexport const CrossHatchLines = /* @__PURE__ */ read(\"CrossHatchLines\")\nexport const CrossHatches = /* @__PURE__ */ read(\"CrossHatches\")\nexport const DEFAULT_RULE_COLOR = /* @__PURE__ */ read(\"DEFAULT_RULE_COLOR\")\nexport const DisplayChromeOverlayProvider = /* @__PURE__ */ read(\"DisplayChromeOverlayProvider\")\nexport const DisplayUIProvider = /* @__PURE__ */ read(\"DisplayUIProvider\")\nexport const FLOATING_LEGEND_RIGHT_PX = /* @__PURE__ */ read(\"FLOATING_LEGEND_RIGHT_PX\")\nexport const FLOATING_LEGEND_TOP_PX = /* @__PURE__ */ read(\"FLOATING_LEGEND_TOP_PX\")\nexport const FloatingLegend = /* @__PURE__ */ read(\"FloatingLegend\")\nexport const FloatingSvgOverlay = /* @__PURE__ */ read(\"FloatingSvgOverlay\")\nexport const FloatingText = /* @__PURE__ */ read(\"FloatingText\")\nexport const PointerLayer = /* @__PURE__ */ read(\"PointerLayer\")\nexport const SCORE_CAPTION_HEIGHT = /* @__PURE__ */ read(\"SCORE_CAPTION_HEIGHT\")\nexport const ScoreDomainCaption = /* @__PURE__ */ read(\"ScoreDomainCaption\")\nexport const ScoreRuleLines = /* @__PURE__ */ read(\"ScoreRuleLines\")\nexport const ScoreRules = /* @__PURE__ */ read(\"ScoreRules\")\nexport const SvgHaloText = /* @__PURE__ */ read(\"SvgHaloText\")\nexport const TEXT_BASELINE_RATIO = /* @__PURE__ */ read(\"TEXT_BASELINE_RATIO\")\nexport const Tooltip = /* @__PURE__ */ read(\"Tooltip\")\nexport const TrackControlProvider = /* @__PURE__ */ read(\"TrackControlProvider\")\nexport const TrackOverlayContext = /* @__PURE__ */ read(\"TrackOverlayContext\")\nexport const TrackOverlayPortal = /* @__PURE__ */ read(\"TrackOverlayPortal\")\nexport const TrackOverlaySlot = /* @__PURE__ */ read(\"TrackOverlaySlot\")\nexport const YSCALEBAR_LABEL_OFFSET = /* @__PURE__ */ read(\"YSCALEBAR_LABEL_OFFSET\")\nexport const YScaleBar = /* @__PURE__ */ read(\"YScaleBar\")\nexport const YScaleBarOverlay = /* @__PURE__ */ read(\"YScaleBarOverlay\")\nexport const axisDrawn = /* @__PURE__ */ read(\"axisDrawn\")\nexport const axisGutterLeft = /* @__PURE__ */ read(\"axisGutterLeft\")\nexport const axisGutterWidth = /* @__PURE__ */ read(\"axisGutterWidth\")\nexport const axisPlotBox = /* @__PURE__ */ read(\"axisPlotBox\")\nexport const clampStrokeInsideAxis = /* @__PURE__ */ read(\"clampStrokeInsideAxis\")\nexport const cullOverlappingLabels = /* @__PURE__ */ read(\"cullOverlappingLabels\")\nexport const formatScore = /* @__PURE__ */ read(\"formatScore\")\nexport const isLiveModel = /* @__PURE__ */ read(\"isLiveModel\")\nexport const leftAxisGutterWidth = /* @__PURE__ */ read(\"leftAxisGutterWidth\")\nexport const plainChromeOverlays = /* @__PURE__ */ read(\"plainChromeOverlays\")\nexport const plainTrackControl = /* @__PURE__ */ read(\"plainTrackControl\")\nexport const resolveOverlays = /* @__PURE__ */ read(\"resolveOverlays\")\nexport const scoreToAxisY = /* @__PURE__ */ read(\"scoreToAxisY\")\nexport const textHalo = /* @__PURE__ */ read(\"textHalo\")\nexport const tooLargeBannerText = /* @__PURE__ */ read(\"tooLargeBannerText\")\nexport const useChromeOverlayOverride = /* @__PURE__ */ read(\"useChromeOverlayOverride\")\nexport const useTooltip = /* @__PURE__ */ read(\"useTooltip\")\nexport const useTrackControlMenu = /* @__PURE__ */ read(\"useTrackControlMenu\")\nexport const useTrackControlOverride = /* @__PURE__ */ read(\"useTrackControlOverride\")\nexport default host && host.__esModule ? host.default : host", "import { useState } from 'react'\nimport type { CSSProperties, ReactNode } from 'react'\n\nimport DisplayBackgroundProgress from '@jbrowse/display-kit/DisplayBackgroundProgress'\nimport DisplayErrorBar from '@jbrowse/display-kit/DisplayErrorBar'\nimport DisplayLoadingOverlay from '@jbrowse/display-kit/DisplayLoadingOverlay'\nimport TooLargeMessage from '@jbrowse/display-kit/TooLargeMessage'\nimport {\n  BottomRightCornerContext,\n  TrackOverlayPortal,\n  useChromeOverlayOverride,\n} from '@jbrowse/display-ui'\nimport { observer } from 'mobx-react'\n\nimport type { LinearGraphDisplayModel } from '../model'\nimport type { DisplayStatusPhase } from '@jbrowse/render-core/displayPhase'\n\nconst muiOverlays = {\n  TooLarge: TooLargeMessage,\n  ErrorBar: DisplayErrorBar,\n  Loading: DisplayLoadingOverlay,\n  BackgroundProgress: DisplayBackgroundProgress,\n}\n\nconst ZOOM_IN_ADVICE =\n  'Zoom in to see features, or force load this track for the rest of the session (may be slow)'\nconst FORCE_LOAD_ADVICE =\n  'Force load this track for the rest of the session (may be slow)'\n\n// Hosts before the plain-props overlay change (jbrowse-components 3a5393f5a6)\n// read `model` and `visible`; later hosts read values and callbacks. Each\n// overlay gets both, so one build runs on either.\nfunction overlayProps(model: LinearGraphDisplayModel) {\n  const error = model.error ?? model.renderError\n  const regionTooLarge =\n    error instanceof Error &&\n    (error as { regionTooLarge?: unknown }).regionTooLarge === true\n  return {\n    error: {\n      error,\n      onRetry: regionTooLarge\n        ? undefined\n        : () => {\n            model.reload()\n          },\n    },\n    tooLarge: {\n      message: [\n        model.regionTooLargeReason,\n        model.zoomCanReleaseGate ? ZOOM_IN_ADVICE : FORCE_LOAD_ADVICE,\n      ]\n        .filter(Boolean)\n        .join('. '),\n      onForceLoad: () => {\n        model.forceLoad()\n      },\n    },\n    loading: {\n      message: model.statusMessage,\n      progress: model.statusProgress,\n      canceled: model.fetchCanceled,\n      onCancel: () => {\n        model.cancelFetchByUser()\n      },\n      onRetry: () => {\n        model.reload()\n      },\n    },\n    background: {\n      message: model.statusMessage,\n      progress: model.statusProgress,\n    },\n  }\n}\n\n/**\n * The status chrome of a display that owns its canvas: the zoom-in notice in\n * place of the display, and the error bar, loading overlay and progress chip\n * over it in the track's overlay layer. Core's `DisplayStatusChrome` drew this\n * until jbrowse-web main removed it on 2026-10-08 (d8db736896), and its named\n * import came back undefined there, failing the track with React error #130.\n * Built here from the overlays every host from 5.0.0-beta.11 serves.\n */\nexport default observer(function GraphStatusChrome({\n  model,\n  phase,\n  drawn,\n  testid,\n  style,\n  children,\n  ...dataProps\n}: {\n  model: LinearGraphDisplayModel\n  phase: DisplayStatusPhase\n  drawn: boolean\n  testid: string\n  style?: CSSProperties\n  children: ReactNode\n} & Record<`data-${string}`, unknown>) {\n  const { TooLarge, ErrorBar, Loading, BackgroundProgress } =\n    useChromeOverlayOverride() ?? muiOverlays\n  const [corner, setCorner] = useState<HTMLDivElement | null>(null)\n  const props = overlayProps(model)\n  const attributes = {\n    ...dataProps,\n    'data-testid': testid,\n    'data-display-id': model.configuration.displayId,\n    'data-display-drawn': drawn,\n    'data-display-phase': phase,\n  }\n  if (phase === 'tooLarge') {\n    return (\n      <div style={{ display: 'contents' }} {...attributes}>\n        <TrackOverlayPortal>\n          <div style={{ pointerEvents: 'auto' }}>\n            <TooLarge model={model} {...props.tooLarge} />\n          </div>\n        </TrackOverlayPortal>\n      </div>\n    )\n  }\n  return (\n    <div\n      style={{ position: 'relative', height: model.height, ...style }}\n      {...attributes}\n    >\n      <BottomRightCornerContext value={corner}>\n        {children}\n      </BottomRightCornerContext>\n      <TrackOverlayPortal>\n        {phase === 'error' ? (\n          <ErrorBar model={model} visible {...props.error} />\n        ) : null}\n        <Loading\n          model={model}\n          {...props.loading}\n          visible={phase === 'loading' || phase === 'canceled'}\n          immediate={!drawn}\n        />\n        <div\n          ref={setCorner}\n          style={{\n            position: 'absolute',\n            bottom: 2,\n            right: 2,\n            display: 'flex',\n            flexDirection: 'column',\n            alignItems: 'flex-end',\n            gap: 4,\n            pointerEvents: 'none',\n          }}\n        >\n          {phase === 'ready' && model.statusMessage ? (\n            <BackgroundProgress model={model} visible {...props.background} />\n          ) : null}\n        </div>\n      </TrackOverlayPortal>\n    </div>\n  )\n})\n", "import { observer } from 'mobx-react'\n\nimport GraphStatusChrome from './GraphStatusChrome'\nimport GraphCanvas from '../../GraphGenomeView/components/GraphCanvas'\n\nimport type { LinearGraphDisplayModel } from '../model'\n\nconst LinearGraphDisplay = observer(function LinearGraphDisplay({\n  model,\n}: {\n  model: LinearGraphDisplayModel\n}) {\n  return (\n    <GraphStatusChrome\n      model={model}\n      phase={model.displayPhase}\n      drawn={model.painted && model.geometryPainted}\n      testid=\"linear-graph-display\"\n      data-layout={model.chosenLayoutMode}\n      data-cut-tier={model.cutTier}\n      data-recuts={model.recuts}\n      data-node-count={model.hasGraph ? model.nodeCount : undefined}\n      data-loading={model.isLoading ? '' : undefined}\n      style={{\n        width: model.paneWidth,\n        height: model.height,\n        overflow: 'hidden',\n      }}\n    >\n      <GraphCanvas model={model} ownChrome={false} />\n    </GraphStatusChrome>\n  )\n})\n\nexport default LinearGraphDisplay\n"],
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package/dist/chunks/{MinigraphBubbleAdapter-2JRRNRI3.js → MinigraphBubbleAdapter-HDLUZ6YF.js}

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package/dist/chunks/{WalkTabixSyntenyAdapter-DMLJF27U.js → WalkTabixSyntenyAdapter-AIC3W7FL.js}

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Vt(t){let[e,o]=[...t.values()];return{spread:Math.hypot(e.x-o.x,e.y-o.y),mid:{x:(e.x+o.x)/2,y:(e.y+o.y)/2}}}function Zt(t){let e=k({x:0,y:0}),o=k({x:0,y:0}),i=k(!1),a=k(void 0),p=r=>a.current!==void 0&&r.pointerId!==a.current,c=k(new Map),l=k(null),s=k(null),d=k(!1),y=k(!1),w=k({frame:0,pan:null,hover:null,pinch:!1});G(()=>()=>{cancelAnimationFrame(w.current.frame)},[]);let[E,z]=R(),[T,A]=R(!1),[O,B]=R(void 0);function F(r){let u=r.currentTarget.getBoundingClientRect();return{x:r.clientX-u.left,y:r.clientY-u.top}}function M(r,u){if(t.layoutResult?.tubeMap)return t.tubeMapNodeAt(r,u);let m=t.referenceStripNodeAt(r,u);if(m)return m;let{nodePositions:g}=t;if(!g)return null;let{x:v,y:b}=le(r,u,t,t.axisScale);return ce(g,v,b,t.axisScale,t.positionsVersion,t.nodeInk)}function H(r,u){let{nodePositions:m,graph:g}=t;if(!m||!g)return null;let{x:v,y:b}=le(r,u,t,t.axisScale);return pe(m,g,v,b,t.axisScale,t.effectiveDrawPaths&&!t.facetPanels,t.positionsVersion,t.deletionEdgeIndexes,t.hiddenEdgeIndexes,t.deletionRoutes,t.layoutResult?.stranded)}function $t(r){r.button===0&&r.preventDefault()}function qt(r){if(r.button!==0)return;let u=c.current;if(p(r)){t.isPanning&&!y.current&&r.pointerType==="touch"&&u.size===1&&(r.currentTarget.setPointerCapture(r.pointerId),u.set(r.pointerId,j(r)),s.current=Vt(u),i.current=!0);return}i.current=!1,o.current={x:r.clientX,y:r.clientY},r.currentTarget.removeAttribute(ve);let m=t.followsHostView;if(t.hostPlacesX||m&&r.shiftKey)return;r.currentTarget.setPointerCapture(r.pointerId),a.current=r.pointerId,l.current=r.currentTarget,u.clear(),u.set(r.pointerId,j(r));let{x:g,y:v}=F(r),b=v<t.referenceStripZonePx,S=t.layoutResult?.tubeMap||b?null:M(g,v);m&&S&&r.currentTarget.setAttribute(ve,""),y.current=m,d.current=b&&!m,S?t.setDraggingNode(S):t.setPanning(!0),e.current={x:r.clientX,y:r.clientY}}function ye(){let r=s.current,u=l.current;if(!r||!u)return;let m=Vt(c.current),g=u.getBoundingClientRect();r.spread>0&&m.spread>0&&t.zoom(m.spread/r.spread,r.mid.x-g.left,r.mid.y-g.top),t.setTransform(t.scale,t.translateX+m.mid.x-r.mid.x,t.translateY+m.mid.y-r.mid.y),s.current=m}function Ut(){let r=w.current,{pan:u,hover:m,pinch:g}=r;if(r.frame=0,r.pan=null,r.hover=null,r.pinch=!1,g&&ye(),u&&d.current?t.host?.horizontalScroll(-u.dx):u&&y.current?t.setTransform(t.scale,t.translateX,t.translateY+u.dy):u&&t.setTransform(t.scale,t.translateX+u.dx,t.translateY+u.dy),!m)return;let{x:v,y:b}=m,S=t.facetPanels?void 0:dt(t.overlayLabels,v,b);B(P=>P?.label===S?.label&&P?.readout===S?.readout?P:S);let C=t.walkRowBars;if(C){let P=t.walkRowAt(v,b);t.setHoveredWalkRow(P===void 0?null:[C.reference,...C.rows][P].name)}if(t.nodePositions&&t.graph){let P=M(v,b);t.setHoveredPanel(t.tubeMapPanelAt(b)),t.setHoveredNode(P,{x:v,y:b}),A(P!==null&&!t.hostPlacesX&&!t.layoutResult?.tubeMap&&b>=t.referenceStripZonePx),t.setHoveredTube(P===null&&t.layoutResult?.tubeMap?t.tubeAt(v,b):null),t.setHoveredEdge(P||t.layoutResult?.tubeMap||!t.hoverLightsEverything?null:H(v,b))}}function K(){w.current.frame||(w.current.frame=requestAnimationFrame(Ut))}function Jt(){let r=w.current;cancelAnimationFrame(r.frame),r.frame=0,r.pan=null,r.hover=null,r.pinch=!1}function Qt(r){let u=c.current;if(s.current&&u.has(r.pointerId)){u.set(r.pointerId,j(r)),w.current.pinch=!0,K();return}if(p(r))return;let m=r.clientX-e.current.x,g=r.clientY-e.current.y;e.current={x:r.clientX,y:r.clientY},Math.hypot(r.clientX-o.current.x,r.clientY-o.current.y)>Ft&&(i.current=!0);let v=w.current;if(t.draggingNode)t.moveNode(t.draggingNode,m/t.scaleX,g/t.scaleY);else if(t.isPanning)v.pan={dx:(v.pan?.dx??0)+m,dy:(v.pan?.dy??0)+g},K();else{let 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n(L,{children:e.visibleRowLabels.map(({label:o,y:i,top:a})=>n("div",{"data-testid":"graph-row-label",style:{...eo,top:a},children:o},i))})}),no={position:"absolute",top:ee,right:ee,display:"flex",flexDirection:"column",borderRadius:3,overflow:"hidden",zIndex:4},Kt={position:"absolute",transform:"translate(-50%, -50%)",background:"rgba(255,255,255,0.78)",padding:"0 3px",borderRadius:3,fontSize:10,lineHeight:"13px",whiteSpace:"nowrap",pointerEvents:"none",zIndex:3},oo={...Kt,color:"#18181c",fontWeight:600},ro=h(function({model:e}){let o=k(null),i=e.legendAtRest;return G(()=>{let a=o.current;if(!a||!i)return;let p=()=>{I(e)&&e.legendAtRest&&e.setLegendSize({width:a.offsetWidth,height:a.offsetHeight})};p();let c=new ResizeObserver(p);return c.observe(a),()=>{c.disconnect()}},[e,i]),n("div",{ref:o,style:{...no,top:ee+e.referenceStripZonePx},children:n(wt,{model:e})})}),ao=h(function({model:e}){let o=e.overlayLabels.sizes,i=o.flatMap(({key:a,leader:p})=>p?[{key:a,...p}]:[]);return f(L,{children:[i.length>0?n(te,{model:e,zIndex:2,overflow:"visible",children:i.map(({key:a,arcX:p,arcY:c,labelX:l,labelY:s})=>n("line",{"data-testid":"graph-label-leader",x1:p,y1:c,x2:l,y2:s,stroke:"#18181c",strokeWidth:1},a))}):null,o.map(({key:a,text:p,x:c,y:l,kind:s})=>n("div",{"data-testid":"graph-size-label",style:{...s==="deletion"?oo:Kt,left:c,top:l},children:p},a))]})}),io=h(function({model:e,ownChrome:o=!0}){let{canvasRef:i,canvas:a,error:p,retry:c}=vt(jt,e),{handlers:l,canvasStyle:s,surfaceProps:d,labelHandlers:y,contextMenu:w,closeContextMenu:E,hoveredChip:z}=Zt(e),[T,A]=R(null);Yt(T,a,e);let O=e.facetPanels!==void 0;return f("div",{style:qn,...d,children:[o?n(At,{model:e}):null,f("div",{ref:A,style:Un,...y,onMouseEnter:()=>{e.setPointerInPane(!0)},onMouseLeave:()=>{I(e)&&e.setPointerInPane(!1)},children:[e.referenceStripShown?n("div",{style:{...Jn,top:e.referenceStripZonePx,background:Q}}):null,n("canvas",{ref:i,"data-testid":"graph-genome-canvas",style:{...s,width:e.paneWidth,height:e.canvasHeight,display:"block",position:"relative",zIndex:1},...l}),O?n(xt,{model:e,handlers:l,canvasStyle:s}):f(L,{children:[n(mt,{model:e}),n(fe,{model:e}),n(ht,{model:e}),n(to,{model:e}),n(ao,{model:e}),n(nt,{model:e}),n(lt,{model:e}),n(ft,{model:e}),n(gt,{model:e}),n(Dt,{model:e}),n(ro,{model:e})]}),o?n("div",{style:Qn,children:n(Se,{isVisible:e.isLoading,immediate:!e.layoutResult,statusMessage:e.statusMessage,onCancel:e.canCancelLoad?()=>{e.cancelLoad()}:void 0})}):null,n(zt,{model:e,chip:z})]}),e.walkStripShown?n(Ot,{model:e}):null,n(Z,{model:e,at:w,onClose:E}),p?n(se,{error:p,onReset:c}):null,o&&e.error?n(se,{error:e.error,onReset:e.canRetryLoad?()=>{e.retryLoad()}:void 0}):null]})}),zi=io;export{zi as a};
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