jbrowse-plugin-graphgenomeviewer 4.0.7 → 4.0.8

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Files changed (73) hide show
  1. package/README.md +26 -43
  2. package/dist/chunks/AddTrackWorkflow-LRRSAVSX.js +2 -0
  3. package/dist/chunks/{AddTrackWorkflow-J44PELJE.js.map → AddTrackWorkflow-LRRSAVSX.js.map} +1 -1
  4. package/dist/chunks/{GbzBaseSyntenyAdapter-BLSUE5LT.js → GbzBaseSyntenyAdapter-WI3VYEF2.js} +5 -5
  5. package/dist/chunks/{GbzBaseSyntenyAdapter-BLSUE5LT.js.map → GbzBaseSyntenyAdapter-WI3VYEF2.js.map} +4 -4
  6. package/dist/chunks/{GraphGenomeView-U4XVAEO3.js → GraphGenomeView-K5PZO33Q.js} +2 -2
  7. package/dist/chunks/{GraphGenomeView-U4XVAEO3.js.map → GraphGenomeView-K5PZO33Q.js.map} +1 -1
  8. package/dist/chunks/{GraphTrackSettingsDialog-6KKN5F3W.js → GraphTrackSettingsDialog-6STIFKVD.js} +2 -2
  9. package/dist/chunks/LinearGraphDisplay-3WQBA6ZX.js +2 -0
  10. package/dist/chunks/{LinearGraphDisplay-IBECRYKJ.js.map → LinearGraphDisplay-3WQBA6ZX.js.map} +2 -2
  11. package/dist/chunks/{chunk-N7EFSGPU.js → chunk-254OZVVL.js} +2 -2
  12. package/dist/chunks/chunk-5TBIQWPH.js +4 -0
  13. package/dist/chunks/chunk-5TBIQWPH.js.map +7 -0
  14. package/dist/chunks/chunk-FCWXYIFC.js +2 -0
  15. package/dist/chunks/chunk-FCWXYIFC.js.map +7 -0
  16. package/dist/chunks/chunk-JVMMNMQG.js +2 -0
  17. package/dist/chunks/chunk-JVMMNMQG.js.map +7 -0
  18. package/dist/chunks/chunk-NBDRTXH2.js +2 -0
  19. package/dist/chunks/chunk-NBDRTXH2.js.map +7 -0
  20. package/dist/chunks/chunk-VXUVWSY5.js +2 -0
  21. package/dist/chunks/chunk-VXUVWSY5.js.map +7 -0
  22. package/dist/jbrowse-plugin-graphgenomeviewer.esm.js +2 -2
  23. package/dist/jbrowse-plugin-graphgenomeviewer.esm.js.map +4 -4
  24. package/package.json +3 -1
  25. package/src/GbzBaseSyntenyAdapter/GbzBaseSyntenyAdapter.test.ts +45 -1
  26. package/src/GbzBaseSyntenyAdapter/GbzBaseSyntenyAdapter.ts +26 -114
  27. package/src/GbzBaseSyntenyAdapter/configSchema.ts +1 -1
  28. package/src/GbzBaseSyntenyAdapter/gbzWindow.ts +166 -0
  29. package/src/GraphAddTrackWorkflow/buildTrackConfig.test.ts +1 -1
  30. package/src/GraphAddTrackWorkflow/buildTrackConfig.ts +1 -1
  31. package/src/GraphGenomeView/components/GraphCanvas.tsx +16 -3
  32. package/src/GraphGenomeView/components/TubeMapOverlay.tsx +70 -0
  33. package/src/GraphGenomeView/labelLayout.test.ts +1 -0
  34. package/src/GraphGenomeView/labelLayout.ts +18 -14
  35. package/src/GraphGenomeView/layout/tubeMapLayout.test.ts +95 -0
  36. package/src/GraphGenomeView/layout/tubeMapLayout.ts +276 -0
  37. package/src/GraphGenomeView/layoutModes.ts +27 -0
  38. package/src/GraphGenomeView/model.test.ts +3 -1
  39. package/src/GraphGenomeView/model.ts +114 -68
  40. package/src/GraphGenomeView/pipeline.ts +14 -5
  41. package/src/GraphGenomeView/renderPasses.bench.ts +1 -0
  42. package/src/GraphGenomeView/tubeMap/draw.ts +264 -0
  43. package/src/GraphGenomeView/tubeMap/frame.test.ts +59 -0
  44. package/src/GraphGenomeView/tubeMap/frame.ts +78 -0
  45. package/src/GraphGenomeView/tubeMap/warp.test.ts +58 -0
  46. package/src/GraphGenomeView/tubeMap/warp.ts +99 -0
  47. package/src/GraphGenomeView/types.ts +8 -4
  48. package/src/GraphGenomeView/viewport.ts +91 -0
  49. package/src/GraphTrack/index.ts +53 -0
  50. package/src/LinearGraphDisplay/LinearGraphDisplay.test.ts +25 -37
  51. package/src/LinearGraphDisplay/components/LinearGraphDisplay.tsx +1 -1
  52. package/src/LinearGraphDisplay/index.ts +12 -9
  53. package/src/LinearGraphDisplay/model.ts +5 -1
  54. package/src/RgfaTabixAdapter/configSchema.ts +1 -1
  55. package/src/core.test.ts +86 -6
  56. package/src/core.ts +38 -0
  57. package/src/graphTrackDefaults/graphTrackDefaults.test.ts +58 -36
  58. package/src/graphTrackDefaults/index.ts +66 -29
  59. package/src/index.ts +2 -0
  60. package/src/launchFromGraph/launchTracks.ts +1 -2
  61. package/src/version.ts +1 -1
  62. package/dist/chunks/AddTrackWorkflow-J44PELJE.js +0 -2
  63. package/dist/chunks/LinearGraphDisplay-IBECRYKJ.js +0 -2
  64. package/dist/chunks/chunk-C6PIPNZS.js +0 -2
  65. package/dist/chunks/chunk-C6PIPNZS.js.map +0 -7
  66. package/dist/chunks/chunk-IVUTPSHP.js +0 -2
  67. package/dist/chunks/chunk-IVUTPSHP.js.map +0 -7
  68. package/dist/chunks/chunk-J2UKZSOC.js +0 -2
  69. package/dist/chunks/chunk-J2UKZSOC.js.map +0 -7
  70. package/dist/chunks/chunk-MT25CI4U.js +0 -4
  71. package/dist/chunks/chunk-MT25CI4U.js.map +0 -7
  72. /package/dist/chunks/{GraphTrackSettingsDialog-6KKN5F3W.js.map → GraphTrackSettingsDialog-6STIFKVD.js.map} +0 -0
  73. /package/dist/chunks/{chunk-N7EFSGPU.js.map → chunk-254OZVVL.js.map} +0 -0
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