jbrowse-plugin-graphgenomeviewer 4.0.20 → 4.0.21

package/dist/chunks/{GraphGenomeView-YKR42OER.js → GraphGenomeView-CLUMXH4K.js}

@@ -1,4 +1,4 @@
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+import{a as x}from"./chunk-3SZJ4AFI.js";import"./chunk-3FGJLRG2.js";import"./chunk-UQEPPJEO.js";import"./chunk-SCMIJAAX.js";import"./chunk-FCWXYIFC.js";import"./chunk-CLRXQ6BM.js";import{B as L}from"./chunk-VIFXYTIS.js";import"./chunk-EFVAQ2KM.js";import"./chunk-KULNKXPT.js";import{a as s,b as g,c as v,d as G,e as B}from"./chunk-XEJ47DLD.js";import{b as a}from"./chunk-FY3BTKY4.js";var S=a(g(),1);var m=a(G(),1),n=a(v(),1),C=a(g(),1),P=a(L(),1),o=a(s(),1),I=(0,P.makeStyles)()({paper:{padding:16,margin:8,maxWidth:560,marginInline:"auto",display:"flex",flexDirection:"column",gap:12},row:{display:"flex",alignItems:"center",justifyContent:"space-between",gap:8}}),b=(0,C.observer)(function({model:e}){let{classes:r}=I();return e.isLoading?(0,o.jsxs)(n.Paper,{className:r.paper,"data-testid":"graph-genome-loading",children:[(0,o.jsxs)("div",{className:r.row,children:[(0,o.jsx)(m.LoadingEllipses,{variant:"h6",message:e.statusMessage}),(0,o.jsx)(n.Button,{size:"small","data-testid":"graph-genome-cancel",onClick:()=>{e.cancelLoad()},children:"Cancel"})]}),(0,o.jsx)(n.LinearProgress,{variant:"indeterminate"})]}):e.error?(0,o.jsx)(n.Paper,{className:r.paper,children:(0,o.jsx)(m.ErrorBanner,{error:e.error,onReset:()=>{e.retryLoad()}})}):(0,o.jsx)(n.Paper,{className:r.paper,"data-testid":"graph-genome-load-canceled",children:(0,o.jsxs)("div",{className:r.row,children:[(0,o.jsx)(n.Typography,{variant:"h6",children:"Loading canceled"}),(0,o.jsx)(n.Button,{variant:"contained",size:"small","data-testid":"graph-genome-retry",onClick:()=>{e.retryLoad()},children:"Retry"})]})})}),h=b;var M=a(B(),1),N=a(G(),1),i=a(v(),1),w=a(g(),1),E=a(L(),1),t=a(s(),1),k=`H	VN:Z:1.0
 S	1	ACGT
 S	2	GGCC
 S	3	TTAA
@@ -7,4 +7,4 @@ L	1	+	2	+	0M
 L	1	+	3	+	0M
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package/dist/chunks/{GraphTrackSettingsDialog-2QV6TPX7.js → GraphTrackSettingsDialog-QF5OMTCH.js}

@@ -1,4 +1,4 @@
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package/dist/chunks/{LinearGraphDisplay-AFTQJKEI.js → LinearGraphDisplay-4CMVCEM5.js}

@@ -1,2 +1,2 @@
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package/dist/chunks/chunk-3FGJLRG2.js

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o.nodeIds){let b=s.get(m)??0;i.has(m)||i.set(m,{start:c,end:c+b}),c+=b}let f=l===void 0||[...i.values()].some(m=>m.end<=l.start)&&[...i.values()].some(m=>m.start>=l.end),u=m=>{let{ids:b,complete:g}=Bi(m.nodeIds,i,l,f),x=[],N=0,L=0,S=0;for(let M of b){let E=s.get(M)??0,A=i.get(M),T=x.at(-1),G=T?.referenceStart,$=A&&G!==void 0&&S>=0&&G+T.bp===A.start,F=A&&G!==void 0&&S<=0&&A.end===G;!A&&T&&!T.onReference?T.bp+=E:$||F?(T.bp+=E,$||(T.referenceStart=A.start,T.reversed=!0),S=$?1:-1):(x.push({start:N,bp:E,onReference:A!==void 0,referenceStart:A?.start}),S=0),N+=E,A||(L+=E)}return{name:m.name,label:vi(m),sample:lr(m),haplotype:m.haplotype,bp:N,offReferenceBp:L,complete:g,runs:x}},d=m=>m.nodeIds.some(b=>i.has(b)),h=new Set(r.filter(m=>m!==o&&d(m)).map(m=>m.name));return{origin:l?l.start:a,unit:t,reference:u(o),rows:r.filter(m=>m!==o&&(d(m)||!h.has(m.name))).map(u).sort((m,b)=>Number(b.complete)-Number(m.complete)||b.bp-m.bp||m.label.localeCompare(b.label))}}var Oi=1.3;function Pi(e){let 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