jbrowse-plugin-graphgenomeviewer 4.0.11 → 4.0.13

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Files changed (62) hide show
  1. package/README.md +22 -4
  2. package/dist/chunks/GbzBaseSyntenyAdapter-Y5NBXK7P.js +8 -0
  3. package/dist/chunks/{GbzBaseSyntenyAdapter-URQ4Z2JB.js.map → GbzBaseSyntenyAdapter-Y5NBXK7P.js.map} +4 -4
  4. package/dist/chunks/{GraphGenomeView-44GJL4RA.js → GraphGenomeView-TTQEJJQD.js} +2 -2
  5. package/dist/chunks/{GraphGenomeView-44GJL4RA.js.map → GraphGenomeView-TTQEJJQD.js.map} +1 -1
  6. package/dist/chunks/GraphTrackSettingsDialog-3A2PKZRI.js +4 -0
  7. package/dist/chunks/{GraphTrackSettingsDialog-LZITZ3VD.js.map → GraphTrackSettingsDialog-3A2PKZRI.js.map} +1 -1
  8. package/dist/chunks/LinearGraphDisplay-MJ5XZFE5.js +2 -0
  9. package/dist/chunks/{LinearGraphDisplay-BWBXVSEQ.js.map → LinearGraphDisplay-MJ5XZFE5.js.map} +1 -1
  10. package/dist/chunks/{MinigraphBubbleAdapter-QTXGK7DW.js → MinigraphBubbleAdapter-APC7JYOM.js} +2 -2
  11. package/dist/chunks/{RgfaTabixAdapter-O3ERR2GY.js → RgfaTabixAdapter-4E365PXO.js} +2 -2
  12. package/dist/chunks/{chunk-LGGAXAS6.js → chunk-5DP7IXD3.js} +2 -2
  13. package/dist/chunks/chunk-CJ56O2VG.js +2 -0
  14. package/dist/chunks/chunk-CJ56O2VG.js.map +7 -0
  15. package/dist/chunks/chunk-EFVAQ2KM.js +2 -0
  16. package/dist/chunks/chunk-EFVAQ2KM.js.map +7 -0
  17. package/dist/chunks/chunk-IFRDWMQ2.js +2 -0
  18. package/dist/chunks/chunk-IFRDWMQ2.js.map +7 -0
  19. package/dist/chunks/chunk-JAQ2RQAE.js +2 -0
  20. package/dist/chunks/{chunk-QRVREF7H.js.map → chunk-JAQ2RQAE.js.map} +4 -4
  21. package/dist/chunks/{chunk-WETM2CD7.js → chunk-LA7MQS33.js} +2 -2
  22. package/dist/chunks/chunk-M4YEAXSR.js +2 -0
  23. package/dist/chunks/chunk-M4YEAXSR.js.map +7 -0
  24. package/dist/chunks/chunk-XDOIZTY6.js +4 -0
  25. package/dist/chunks/chunk-XDOIZTY6.js.map +7 -0
  26. package/dist/jbrowse-plugin-graphgenomeviewer.esm.js +2 -2
  27. package/dist/jbrowse-plugin-graphgenomeviewer.esm.js.map +4 -4
  28. package/package.json +4 -4
  29. package/src/GbzBaseSyntenyAdapter/configSchema.ts +3 -4
  30. package/src/GraphGenomeView/components/GraphCanvas.tsx +4 -11
  31. package/src/GraphGenomeView/components/TubeMapOverlay.tsx +117 -4
  32. package/src/GraphGenomeView/components/WalkRowsOverlay.tsx +261 -44
  33. package/src/GraphGenomeView/components/referenceRampCss.test.ts +27 -0
  34. package/src/GraphGenomeView/components/referenceRampCss.ts +39 -0
  35. package/src/GraphGenomeView/genes/genes.test.ts +9 -2
  36. package/src/GraphGenomeView/host.test.ts +25 -2
  37. package/src/GraphGenomeView/host.ts +9 -7
  38. package/src/GraphGenomeView/model.test.ts +383 -4
  39. package/src/GraphGenomeView/model.ts +413 -88
  40. package/src/GraphGenomeView/repeats/repeatFeatures.test.ts +75 -0
  41. package/src/GraphGenomeView/repeats/repeatFeatures.ts +156 -8
  42. package/src/GraphGenomeView/repeats/walkCalls.test.ts +18 -0
  43. package/src/GraphGenomeView/repeats/walkCalls.ts +35 -18
  44. package/src/GraphGenomeView/subgraphLoad.test.ts +1 -0
  45. package/src/LinearGraphDisplay/LinearGraphDisplay.test.ts +165 -6
  46. package/src/LinearGraphDisplay/model.ts +61 -1
  47. package/src/gaf/gafFile.test.ts +18 -0
  48. package/src/version.ts +1 -1
  49. package/dist/chunks/GbzBaseSyntenyAdapter-URQ4Z2JB.js +0 -8
  50. package/dist/chunks/GraphTrackSettingsDialog-LZITZ3VD.js +0 -4
  51. package/dist/chunks/LinearGraphDisplay-BWBXVSEQ.js +0 -2
  52. package/dist/chunks/chunk-ADEBM7AA.js +0 -2
  53. package/dist/chunks/chunk-ADEBM7AA.js.map +0 -7
  54. package/dist/chunks/chunk-MWSRAF5B.js +0 -4
  55. package/dist/chunks/chunk-MWSRAF5B.js.map +0 -7
  56. package/dist/chunks/chunk-QRVREF7H.js +0 -2
  57. package/dist/chunks/chunk-ZYQJBNS5.js +0 -2
  58. package/dist/chunks/chunk-ZYQJBNS5.js.map +0 -7
  59. /package/dist/chunks/{MinigraphBubbleAdapter-QTXGK7DW.js.map → MinigraphBubbleAdapter-APC7JYOM.js.map} +0 -0
  60. /package/dist/chunks/{RgfaTabixAdapter-O3ERR2GY.js.map → RgfaTabixAdapter-4E365PXO.js.map} +0 -0
  61. /package/dist/chunks/{chunk-LGGAXAS6.js.map → chunk-5DP7IXD3.js.map} +0 -0
  62. /package/dist/chunks/{chunk-WETM2CD7.js.map → chunk-LA7MQS33.js.map} +0 -0