jbrowse-plugin-graphgenomeviewer 1.0.0

package/dist/jbrowse-plugin-graphgenomeviewer.umd.production.min.js

@@ -0,0 +1,67 @@
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w.createDenseMatrix({data:B,size:[L,k],datatype:D===w._datatype&&_===g._datatype?R:void 0})}function y(w,g){var A=w._data,C=w._size,D=w._datatype||w.getDataType(),N=g._values,E=g._index,_=g._ptr,L=g._size,P=g._datatype||g._data===void 0?g._datatype:g.getDataType();if(!N)throw new Error("Cannot multiply Dense Matrix times Pattern only Matrix");var k=C[0],R=L[1],F,I=o,B=a,V=n,J=0;D&&P&&D===P&&typeof D=="string"&&D!=="mixed"&&(F=D,I=r.find(o,[F,F]),B=r.find(a,[F,F]),V=r.find(n,[F,F]),J=r.convert(0,F));for(var K=[],z=[],j=[],ue=g.createSparseMatrix({values:K,index:z,ptr:j,size:[k,R],datatype:D===w._datatype&&P===g._datatype?F:void 0}),ee=0;ee<R;ee++){j[ee]=z.length;var ne=_[ee],$=_[ee+1];if($>ne)for(var W=0,Y=0;Y<k;Y++){for(var oe=Y+1,re=void 0,le=ne;le<$;le++){var se=E[le];W!==oe?(re=B(A[Y][se],N[le]),W=oe):re=I(re,B(A[Y][se],N[le]))}W===oe&&!V(re,J)&&(z.push(Y),K.push(re))}}return j[R]=z.length,ue}function b(w,g){var A=w._values,C=w._index,D=w._ptr,N=w._datatype||w._data===void 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Matrix A is decomposed in three matrices (L, U, P) where P * A = L * U",examples:["lup([[2, 1], [1, 4]])","lup(matrix([[2, 1], [1, 4]]))","lup(sparse([[2, 1], [1, 4]]))"],seealso:["lusolve","lsolve","usolve","matrix","sparse","slu","qr"]}});var ZE,YE=T(()=>{ZE={name:"lusolve",category:"Algebra",syntax:["x=lusolve(A, b)","x=lusolve(lu, b)"],description:"Solves the linear system A * x = b where A is an [n x n] matrix and b is a [n] column vector.",examples:["a = [-2, 3; 2, 1]","b = [11, 9]","x = lusolve(a, b)"],seealso:["lup","slu","lsolve","usolve","matrix","sparse"]}});var XE,JE=T(()=>{XE={name:"polynomialRoot",category:"Algebra",syntax:["x=polynomialRoot(-6, 3)","x=polynomialRoot(4, -4, 1)","x=polynomialRoot(-8, 12, -6, 1)"],description:"Finds the roots of a univariate polynomial given by its coefficients starting from constant, linear, and so on, increasing in degree.",examples:["a = polynomialRoot(-6, 11, -6, 1)"],seealso:["cbrt","sqrt"]}});var jE,eF=T(()=>{jE={name:"qr",category:"Algebra",syntax:["qr(A)"],description:"Calculates the Matrix QR decomposition. Matrix `A` is decomposed in two matrices (`Q`, `R`) where `Q` is an orthogonal matrix and `R` is an upper triangular matrix.",examples:["qr([[1, -1,  4], [1,  4, -2], [1,  4,  2], [1,  -1, 0]])"],seealso:["lup","slu","matrix"]}});var rF,tF=T(()=>{rF={name:"rationalize",category:"Algebra",syntax:["rationalize(expr)","rationalize(expr, scope)","rationalize(expr, scope, detailed)"],description:"Transform a rationalizable expression in a rational fraction. If rational fraction is one variable polynomial then converts the numerator and denominator in canonical form, with decreasing exponents, returning the coefficients of numerator.",examples:['rationalize("2x/y - y/(x+1)")','rationalize("2x/y - y/(x+1)", true)'],seealso:["simplify"]}});var oF,aF=T(()=>{oF={name:"resolve",category:"Algebra",syntax:["resolve(node, scope)"],description:"Recursively substitute variables in an expression tree.",examples:['resolve(parse("1 + x"), { x: 7 })','resolve(parse("size(text)"), { text: "Hello World" })','resolve(parse("x + y"), { x: parse("3z") })','resolve(parse("3x"), { x: parse("y+z"), z: parse("w^y") })'],seealso:["simplify","evaluate"],mayThrow:["ReferenceError"]}});var nF,iF=T(()=>{nF={name:"simplify",category:"Algebra",syntax:["simplify(expr)","simplify(expr, rules)"],description:"Simplify an expression tree.",examples:['simplify("3 + 2 / 4")','simplify("2x + x")','f = parse("x * (x + 2 + x)")',"simplified = simplify(f)","simplified.evaluate({x: 2})"],seealso:["simplifyCore","derivative","evaluate","parse","rationalize","resolve"]}});var fF,uF=T(()=>{fF={name:"simplifyConstant",category:"Algebra",syntax:["simplifyConstant(expr)","simplifyConstant(expr, options)"],description:"Replace constant subexpressions of node with their values.",examples:['simplifyConstant("(3-3)*x")','simplifyConstant(parse("z-cos(tau/8)"))'],seealso:["simplify","simplifyCore","evaluate"]}});var sF,lF=T(()=>{sF={name:"simplifyCore",category:"Algebra",syntax:["simplifyCore(node)"],description:"Perform simple one-pass simplifications on an expression tree.",examples:['simplifyCore(parse("0*x"))','simplifyCore(parse("(x+0)*2"))'],seealso:["simplify","simplifyConstant","evaluate"]}});var dF,pF=T(()=>{dF={name:"slu",category:"Algebra",syntax:["slu(A, order, threshold)"],description:"Calculate the Matrix LU decomposition with full pivoting. Matrix A is decomposed in two matrices (L, U) and two permutation vectors (pinv, q) where P * A * Q = L * U",examples:["slu(sparse([4.5, 0, 3.2, 0; 3.1, 2.9, 0, 0.9; 0, 1.7, 3, 0; 3.5, 0.4, 0, 1]), 1, 0.001)"],seealso:["lusolve","lsolve","usolve","matrix","sparse","lup","qr"]}});var mF,cF=T(()=>{mF={name:"symbolicEqual",category:"Algebra",syntax:["symbolicEqual(expr1, expr2)","symbolicEqual(expr1, expr2, options)"],description:"Returns true if the difference of the expressions simplifies to 0",examples:['symbolicEqual("x*y","y*x")','symbolicEqual("abs(x^2)", "x^2")','symbolicEqual("abs(x)", "x", {context: {abs: {trivial: true}}})'],seealso:["simplify","evaluate"]}});var xF,hF=T(()=>{xF={name:"usolve",category:"Algebra",syntax:["x=usolve(U, b)"],description:"Finds one solution of the linear system U * x = b where U is an [n x n] upper triangular matrix and b is a [n] column vector.",examples:["x=usolve(sparse([1, 1, 1, 1; 0, 1, 1, 1; 0, 0, 1, 1; 0, 0, 0, 1]), [1; 2; 3; 4])"],seealso:["usolveAll","lup","lusolve","lsolve","matrix","sparse"]}});var vF,gF=T(()=>{vF={name:"usolveAll",category:"Algebra",syntax:["x=usolve(U, b)"],description:"Finds all solutions of the linear system U * x = b where U is an [n x n] upper triangular matrix and b is a [n] column vector.",examples:["x=usolve(sparse([1, 1, 1, 1; 0, 1, 1, 1; 0, 0, 1, 1; 0, 0, 0, 1]), [1; 2; 3; 4])"],seealso:["usolve","lup","lusolve","lsolve","matrix","sparse"]}});var yF,SF=T(()=>{yF={name:"abs",category:"Arithmetic",syntax:["abs(x)"],description:"Compute the absolute value.",examples:["abs(3.5)","abs(-4.2)"],seealso:["sign"]}});var wF,TF=T(()=>{wF={name:"add",category:"Operators",syntax:["x + y","add(x, y)"],description:"Add two values.",examples:["a = 2.1 + 3.6","a - 3.6","3 + 2i","3 cm + 2 inch",'"2.3" + "4"'],seealso:["subtract"]}});var bF,DF=T(()=>{bF={name:"cbrt",category:"Arithmetic",syntax:["cbrt(x)","cbrt(x, allRoots)"],description:"Compute the cubic root value. If x = y * y * y, then y is the cubic root of x. When `x` is a number or complex number, an optional second argument `allRoots` can be provided to return all three cubic roots. If not provided, the principal root is returned",examples:["cbrt(64)","cube(4)","cbrt(-8)","cbrt(2 + 3i)","cbrt(8i)","cbrt(8i, true)","cbrt(27 m^3)"],seealso:["square","sqrt","cube","multiply"]}});var AF,OF=T(()=>{AF={name:"ceil",category:"Arithmetic",syntax:["ceil(x)","ceil(x, n)","ceil(unit, valuelessUnit)","ceil(unit, n, valuelessUnit)"],description:"Round a value towards plus infinity. If x is complex, both real and imaginary part are rounded towards plus infinity.",examples:["ceil(3.2)","ceil(3.8)","ceil(-4.2)","ceil(3.241cm, cm)","ceil(3.241cm, 2, cm)"],seealso:["floor","fix","round"]}});var CF,RF=T(()=>{CF={name:"cube",category:"Arithmetic",syntax:["cube(x)"],description:"Compute the cube of a value. The cube of x is x * x * x.",examples:["cube(2)","2^3","2 * 2 * 2"],seealso:["multiply","square","pow"]}});var NF,MF=T(()=>{NF={name:"divide",category:"Operators",syntax:["x / y","divide(x, y)"],description:"Divide two values.",examples:["a = 2 / 3","a * 3","4.5 / 2","3 + 4 / 2","(3 + 4) / 2","18 km / 4.5"],seealso:["multiply"]}});var EF,FF=T(()=>{EF={name:"dotDivide",category:"Operators",syntax:["x ./ y","dotDivide(x, y)"],description:"Divide two values element wise.",examples:["a = [1, 2, 3; 4, 5, 6]","b = [2, 1, 1; 3, 2, 5]","a ./ b"],seealso:["multiply","dotMultiply","divide"]}});var BF,_F=T(()=>{BF={name:"dotMultiply",category:"Operators",syntax:["x .* y","dotMultiply(x, y)"],description:"Multiply two values element wise.",examples:["a = [1, 2, 3; 4, 5, 6]","b = [2, 1, 1; 3, 2, 5]","a .* b"],seealso:["multiply","divide","dotDivide"]}});var PF,kF=T(()=>{PF={name:"dotPow",category:"Operators",syntax:["x .^ y","dotPow(x, y)"],description:"Calculates the power of x to y element wise.",examples:["a = [1, 2, 3; 4, 5, 6]","a .^ 2"],seealso:["pow"]}});var LF,IF=T(()=>{LF={name:"exp",category:"Arithmetic",syntax:["exp(x)"],description:"Calculate the exponent of a value.",examples:["exp(1.3)","e ^ 1.3","log(exp(1.3))","x = 2.4","(exp(i*x) == cos(x) + i*sin(x))   # Euler's formula"],seealso:["expm","expm1","pow","log"]}});var zF,qF=T(()=>{zF={name:"expm",category:"Arithmetic",syntax:["exp(x)"],description:"Compute the matrix exponential, expm(A) = e^A. The matrix must be square. Not to be confused with exp(a), which performs element-wise exponentiation.",examples:["expm([[0,2],[0,0]])"],seealso:["exp"]}});var UF,HF=T(()=>{UF={name:"expm1",category:"Arithmetic",syntax:["expm1(x)"],description:"Calculate the value of subtracting 1 from the exponential value.",examples:["expm1(2)","pow(e, 2) - 1","log(expm1(2) + 1)"],seealso:["exp","pow","log"]}});var WF,VF=T(()=>{WF={name:"fix",category:"Arithmetic",syntax:["fix(x)","fix(x, n)","fix(unit, valuelessUnit)","fix(unit, n, valuelessUnit)"],description:"Round a value towards zero. If x is complex, both real and imaginary part are rounded towards zero.",examples:["fix(3.2)","fix(3.8)","fix(-4.2)","fix(-4.8)","fix(3.241cm, cm)","fix(3.241cm, 2, cm)"],seealso:["ceil","floor","round"]}});var GF,$F=T(()=>{GF={name:"floor",category:"Arithmetic",syntax:["floor(x)","floor(x, n)","floor(unit, valuelessUnit)","floor(unit, n, valuelessUnit)"],description:"Round a value towards minus infinity.If x is complex, both real and imaginary part are rounded towards minus infinity.",examples:["floor(3.2)","floor(3.8)","floor(-4.2)","floor(3.241cm, cm)","floor(3.241cm, 2, cm)"],seealso:["ceil","fix","round"]}});var KF,QF=T(()=>{KF={name:"gcd",category:"Arithmetic",syntax:["gcd(a, b)","gcd(a, b, c, ...)"],description:"Compute the greatest common divisor.",examples:["gcd(8, 12)","gcd(-4, 6)","gcd(25, 15, -10)"],seealso:["lcm","xgcd"]}});var ZF,YF=T(()=>{ZF={name:"hypot",category:"Arithmetic",syntax:["hypot(a, b, c, ...)","hypot([a, b, c, ...])"],description:"Calculate the hypotenuse of a list with values.",examples:["hypot(3, 4)","sqrt(3^2 + 4^2)","hypot(-2)","hypot([3, 4, 5])"],seealso:["abs","norm"]}});var XF,JF=T(()=>{XF={name:"invmod",category:"Arithmetic",syntax:["invmod(a, b)"],description:"Calculate the (modular) multiplicative inverse of a modulo b. Solution to the equation ax \u2263 1 (mod b)",examples:["invmod(8, 12)","invmod(7, 13)","invmod(15151, 15122)"],seealso:["gcd","xgcd"]}});var jF,eB=T(()=>{jF={name:"lcm",category:"Arithmetic",syntax:["lcm(x, y)"],description:"Compute the least common multiple.",examples:["lcm(4, 6)","lcm(6, 21)","lcm(6, 21, 5)"],seealso:["gcd"]}});var rB,tB=T(()=>{rB={name:"log",category:"Arithmetic",syntax:["log(x)","log(x, base)"],description:"Compute the logarithm of a value. If no base is provided, the natural logarithm of x is calculated. If base if provided, the logarithm is calculated for the specified base. log(x, base) is defined as log(x) / log(base).",examples:["log(3.5)","a = log(2.4)","exp(a)","10 ^ 4","log(10000, 10)","log(10000) / log(10)","b = log(1024, 2)","2 ^ b"],seealso:["exp","log1p","log2","log10"]}});var oB,aB=T(()=>{oB={name:"log10",category:"Arithmetic",syntax:["log10(x)"],description:"Compute the 10-base logarithm of a value.",examples:["log10(0.00001)","log10(10000)","10 ^ 4","log(10000) / log(10)","log(10000, 10)"],seealso:["exp","log"]}});var nB,iB=T(()=>{nB={name:"log1p",category:"Arithmetic",syntax:["log1p(x)","log1p(x, base)"],description:"Calculate the logarithm of a `value+1`",examples:["log1p(2.5)","exp(log1p(1.4))","pow(10, 4)","log1p(9999, 10)","log1p(9999) / log(10)"],seealso:["exp","log","log2","log10"]}});var fB,uB=T(()=>{fB={name:"log2",category:"Arithmetic",syntax:["log2(x)"],description:"Calculate the 2-base of a value. This is the same as calculating `log(x, 2)`.",examples:["log2(0.03125)","log2(16)","log2(16) / log2(2)","pow(2, 4)"],seealso:["exp","log1p","log","log10"]}});var sB,lB=T(()=>{sB={name:"mod",category:"Operators",syntax:["x % y","x mod y","mod(x, y)"],description:"Calculates the modulus, the remainder of an integer division.",examples:["7 % 3","11 % 2","10 mod 4","isOdd(x) = x % 2","isOdd(2)","isOdd(3)"],seealso:["divide"]}});var dB,pB=T(()=>{dB={name:"multiply",category:"Operators",syntax:["x * y","multiply(x, y)"],description:"multiply two values.",examples:["a = 2.1 * 3.4","a / 3.4","2 * 3 + 4","2 * (3 + 4)","3 * 2.1 km"],seealso:["divide"]}});var mB,cB=T(()=>{mB={name:"norm",category:"Arithmetic",syntax:["norm(x)","norm(x, p)"],description:"Calculate the norm of a number, vector or matrix.",examples:["abs(-3.5)","norm(-3.5)","norm(3 - 4i)","norm([1, 2, -3], Infinity)","norm([1, 2, -3], -Infinity)","norm([3, 4], 2)","norm([[1, 2], [3, 4]], 1)",'norm([[1, 2], [3, 4]], "inf")','norm([[1, 2], [3, 4]], "fro")']}});var xB,hB=T(()=>{xB={name:"nthRoot",category:"Arithmetic",syntax:["nthRoot(a)","nthRoot(a, root)"],description:'Calculate the nth root of a value. The principal nth root of a positive real number A, is the positive real solution of the equation "x^root = A".',examples:["4 ^ 3","nthRoot(64, 3)","nthRoot(9, 2)","sqrt(9)"],seealso:["nthRoots","pow","sqrt"]}});var vB,gB=T(()=>{vB={name:"nthRoots",category:"Arithmetic",syntax:["nthRoots(A)","nthRoots(A, root)"],description:'Calculate the nth roots of a value. An nth root of a positive real number A, is a positive real solution of the equation "x^root = A". This function returns an array of complex values.',examples:["nthRoots(1)","nthRoots(1, 3)"],seealso:["sqrt","pow","nthRoot"]}});var yB,SB=T(()=>{yB={name:"pow",category:"Operators",syntax:["x ^ y","pow(x, y)"],description:"Calculates the power of x to y, x^y.",examples:["2^3","2*2*2","1 + e ^ (pi * i)","pow([[1, 2], [4, 3]], 2)","pow([[1, 2], [4, 3]], -1)"],seealso:["multiply","nthRoot","nthRoots","sqrt"]}});var wB,TB=T(()=>{wB={name:"round",category:"Arithmetic",syntax:["round(x)","round(x, n)","round(unit, valuelessUnit)","round(unit, n, valuelessUnit)"],description:"round a value towards the nearest integer.If x is complex, both real and imaginary part are rounded towards the nearest integer. When n is specified, the value is rounded to n decimals.",examples:["round(3.2)","round(3.8)","round(-4.2)","round(-4.8)","round(pi, 3)","round(123.45678, 2)","round(3.241cm, 2, cm)","round([3.2, 3.8, -4.7])"],seealso:["ceil","floor","fix"]}});var bB,DB=T(()=>{bB={name:"sign",category:"Arithmetic",syntax:["sign(x)"],description:"Compute the sign of a value. The sign of a value x is 1 when x>0, -1 when x<0, and 0 when x=0.",examples:["sign(3.5)","sign(-4.2)","sign(0)"],seealso:["abs"]}});var AB,OB=T(()=>{AB={name:"sqrt",category:"Arithmetic",syntax:["sqrt(x)"],description:"Compute the square root value. If x = y * y, then y is the square root of x.",examples:["sqrt(25)","5 * 5","sqrt(-1)"],seealso:["square","sqrtm","multiply","nthRoot","nthRoots","pow"]}});var CB,RB=T(()=>{CB={name:"sqrtm",category:"Arithmetic",syntax:["sqrtm(x)"],description:"Calculate the principal square root of a square matrix. The principal square root matrix `X` of another matrix `A` is such that `X * X = A`.",examples:["sqrtm([[33, 24], [48, 57]])"],seealso:["sqrt","abs","square","multiply"]}});var NB,MB=T(()=>{NB={name:"sylvester",category:"Algebra",syntax:["sylvester(A,B,C)"],description:"Solves the real-valued Sylvester equation AX+XB=C for X",examples:["sylvester([[-1, -2], [1, 1]], [[-2, 1], [-1, 2]], [[-3, 2], [3, 0]])","A = [[-1, -2], [1, 1]]; B = [[2, -1], [1, -2]]; C = [[-3, 2], [3, 0]]","sylvester(A, B, C)"],seealso:["schur","lyap"]}});var EB,FB=T(()=>{EB={name:"schur",category:"Algebra",syntax:["schur(A)"],description:"Performs a real Schur decomposition of the real matrix A = UTU'",examples:["schur([[1, 0], [-4, 3]])","A = [[1, 0], [-4, 3]]","schur(A)"],seealso:["lyap","sylvester"]}});var BB,_B=T(()=>{BB={name:"lyap",category:"Algebra",syntax:["lyap(A,Q)"],description:"Solves the Continuous-time Lyapunov equation AP+PA'+Q=0 for P",examples:["lyap([[-2, 0], [1, -4]], [[3, 1], [1, 3]])","A = [[-2, 0], [1, -4]]","Q = [[3, 1], [1, 3]]","lyap(A,Q)"],seealso:["schur","sylvester"]}});var PB,kB=T(()=>{PB={name:"square",category:"Arithmetic",syntax:["square(x)"],description:"Compute the square of a value. The square of x is x * x.",examples:["square(3)","sqrt(9)","3^2","3 * 3"],seealso:["multiply","pow","sqrt","cube"]}});var LB,IB=T(()=>{LB={name:"subtract",category:"Operators",syntax:["x - y","subtract(x, y)"],description:"subtract two values.",examples:["a = 5.3 - 2","a + 2","2/3 - 1/6","2 * 3 - 3","2.1 km - 500m"],seealso:["add"]}});var zB,qB=T(()=>{zB={name:"unaryMinus",category:"Operators",syntax:["-x","unaryMinus(x)"],description:"Inverse the sign of a value. Converts booleans and strings to numbers.",examples:["-4.5","-(-5.6)",'-"22"'],seealso:["add","subtract","unaryPlus"]}});var UB,HB=T(()=>{UB={name:"unaryPlus",category:"Operators",syntax:["+x","unaryPlus(x)"],description:"Converts booleans and strings to numbers.",examples:["+true",'+"2"'],seealso:["add","subtract","unaryMinus"]}});var WB,VB=T(()=>{WB={name:"xgcd",category:"Arithmetic",syntax:["xgcd(a, b)"],description:"Calculate the extended greatest common divisor for two values. The result is an array [d, x, y] with 3 entries, where d is the greatest common divisor, and d = x * a + y * b.",examples:["xgcd(8, 12)","gcd(8, 12)","xgcd(36163, 21199)"],seealso:["gcd","lcm"]}});var GB,$B=T(()=>{GB={name:"bitAnd",category:"Bitwise",syntax:["x & y","bitAnd(x, y)"],description:"Bitwise AND operation. Performs the logical AND operation on each pair of the corresponding bits of the two given values by multiplying them. If both bits in the compared position are 1, the bit in the resulting binary representation is 1, otherwise, the result is 0",examples:["5 & 3","bitAnd(53, 131)","[1, 12, 31] & 42"],seealso:["bitNot","bitOr","bitXor","leftShift","rightArithShift","rightLogShift"]}});var KB,QB=T(()=>{KB={name:"bitNot",category:"Bitwise",syntax:["~x","bitNot(x)"],description:"Bitwise NOT operation. Performs a logical negation on each bit of the given value. Bits that are 0 become 1, and those that are 1 become 0.",examples:["~1","~2","bitNot([2, -3, 4])"],seealso:["bitAnd","bitOr","bitXor","leftShift","rightArithShift","rightLogShift"]}});var ZB,YB=T(()=>{ZB={name:"bitOr",category:"Bitwise",syntax:["x | y","bitOr(x, y)"],description:"Bitwise OR operation. Performs the logical inclusive OR operation on each pair of corresponding bits of the two given values. The result in each position is 1 if the first bit is 1 or the second bit is 1 or both bits are 1, otherwise, the result is 0.",examples:["5 | 3","bitOr([1, 2, 3], 4)"],seealso:["bitAnd","bitNot","bitXor","leftShift","rightArithShift","rightLogShift"]}});var XB,JB=T(()=>{XB={name:"bitXor",category:"Bitwise",syntax:["bitXor(x, y)"],description:"Bitwise XOR operation, exclusive OR. Performs the logical exclusive OR operation on each pair of corresponding bits of the two given values. The result in each position is 1 if only the first bit is 1 or only the second bit is 1, but will be 0 if both are 0 or both are 1.",examples:["bitOr(1, 2)","bitXor([2, 3, 4], 4)"],seealso:["bitAnd","bitNot","bitOr","leftShift","rightArithShift","rightLogShift"]}});var jB,e3=T(()=>{jB={name:"leftShift",category:"Bitwise",syntax:["x << y","leftShift(x, y)"],description:"Bitwise left logical shift of a value x by y number of bits.",examples:["4 << 1","8 >> 1"],seealso:["bitAnd","bitNot","bitOr","bitXor","rightArithShift","rightLogShift"]}});var r3,t3=T(()=>{r3={name:"rightArithShift",category:"Bitwise",syntax:["x >> y","rightArithShift(x, y)"],description:"Bitwise right arithmetic shift of a value x by y number of bits.",examples:["8 >> 1","4 << 1","-12 >> 2"],seealso:["bitAnd","bitNot","bitOr","bitXor","leftShift","rightLogShift"]}});var o3,a3=T(()=>{o3={name:"rightLogShift",category:"Bitwise",syntax:["x >>> y","rightLogShift(x, y)"],description:"Bitwise right logical shift of a value x by y number of bits.",examples:["8 >>> 1","4 << 1","-12 >>> 2"],seealso:["bitAnd","bitNot","bitOr","bitXor","leftShift","rightArithShift"]}});var n3,i3=T(()=>{n3={name:"bellNumbers",category:"Combinatorics",syntax:["bellNumbers(n)"],description:"The Bell Numbers count the number of partitions of a set. A partition is a pairwise disjoint subset of S whose union is S. `bellNumbers` only takes integer arguments. The following condition must be enforced: n >= 0.",examples:["bellNumbers(3)","bellNumbers(8)"],seealso:["stirlingS2"]}});var f3,u3=T(()=>{f3={name:"catalan",category:"Combinatorics",syntax:["catalan(n)"],description:"The Catalan Numbers enumerate combinatorial structures of many different types. catalan only takes integer arguments. The following condition must be enforced: n >= 0.",examples:["catalan(3)","catalan(8)"],seealso:["bellNumbers"]}});var s3,l3=T(()=>{s3={name:"composition",category:"Combinatorics",syntax:["composition(n, k)"],description:"The composition counts of n into k parts. composition only takes integer arguments. The following condition must be enforced: k <= n.",examples:["composition(5, 3)"],seealso:["combinations"]}});var d3,p3=T(()=>{d3={name:"stirlingS2",category:"Combinatorics",syntax:["stirlingS2(n, k)"],description:"he Stirling numbers of the second kind, counts the number of ways to partition a set of n labelled objects into k nonempty unlabelled subsets. `stirlingS2` only takes integer arguments. The following condition must be enforced: k <= n. If n = k or k = 1, then s(n,k) = 1.",examples:["stirlingS2(5, 3)"],seealso:["bellNumbers"]}});var m3,c3=T(()=>{m3={name:"arg",category:"Complex",syntax:["arg(x)"],description:"Compute the argument of a complex value. If x = a+bi, the argument is computed as atan2(b, a).",examples:["arg(2 + 2i)","atan2(3, 2)","arg(2 + 3i)"],seealso:["re","im","conj","abs"]}});var x3,h3=T(()=>{x3={name:"conj",category:"Complex",syntax:["conj(x)"],description:"Compute the complex conjugate of a complex value. 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The cartesian product of the indices specified in each dimension determines the target of the operation.",examples:["d = [1, 2; 3, 4]","e = []","e[1, 1:2] = [5, 6]","e[2, :] = [7, 8]","f = d * e","f[2, 1]","f[:, 1]","f[[1,2], [1,3]] = [9, 10; 11, 12]","f"],seealso:["concat","det","diag","identity","inv","ones","range","size","squeeze","trace","transpose","zeros"]}});var j4,e8=T(()=>{j4={name:"trace",category:"Matrix",syntax:["trace(A)"],description:"Calculate the trace of a matrix: the sum of the elements on the main diagonal of a square matrix.",examples:["A = [1, 2, 3; -1, 2, 3; 2, 0, 3]","trace(A)"],seealso:["concat","det","diag","identity","inv","ones","range","size","squeeze","subset","transpose","zeros"]}});var r8,t8=T(()=>{r8={name:"transpose",category:"Matrix",syntax:["x'","transpose(x)"],description:"Transpose a matrix",examples:["a = [1, 2, 3; 4, 5, 6]","a'","transpose(a)"],seealso:["concat","det","diag","identity","inv","ones","range","size","squeeze","subset","trace","zeros"]}});var o8,a8=T(()=>{o8={name:"zeros",category:"Matrix",syntax:["zeros(m)","zeros(m, n)","zeros(m, n, p, ...)","zeros([m])","zeros([m, n])","zeros([m, n, p, ...])"],description:"Create a matrix containing zeros.",examples:["zeros(3)","zeros(3, 5)","a = [1, 2, 3; 4, 5, 6]","zeros(size(a))"],seealso:["concat","det","diag","identity","inv","ones","range","size","squeeze","subset","trace","transpose"]}});var n8,i8=T(()=>{n8={name:"fft",category:"Matrix",syntax:["fft(x)"],description:"Calculate N-dimensional Fourier transform",examples:["fft([[1, 0], [1, 0]])"],seealso:["ifft"]}});var f8,u8=T(()=>{f8={name:"ifft",category:"Matrix",syntax:["ifft(x)"],description:"Calculate N-dimensional inverse Fourier transform",examples:["ifft([[2, 2], [0, 0]])"],seealso:["fft"]}});var s8,l8=T(()=>{s8={name:"combinations",category:"Probability",syntax:["combinations(n, k)"],description:"Compute the number of combinations of n items taken k at a time",examples:["combinations(7, 5)"],seealso:["combinationsWithRep","permutations","factorial"]}});var d8,p8=T(()=>{d8={name:"combinationsWithRep",category:"Probability",syntax:["combinationsWithRep(n, k)"],description:"Compute the number of combinations of n items taken k at a time with replacements.",examples:["combinationsWithRep(7, 5)"],seealso:["combinations","permutations","factorial"]}});var m8,c8=T(()=>{m8={name:"factorial",category:"Probability",syntax:["n!","factorial(n)"],description:"Compute the factorial of a value",examples:["5!","5 * 4 * 3 * 2 * 1","3!"],seealso:["combinations","combinationsWithRep","permutations","gamma"]}});var x8,h8=T(()=>{x8={name:"gamma",category:"Probability",syntax:["gamma(n)"],description:"Compute the gamma function. For small values, the Lanczos approximation is used, and for large values the extended Stirling approximation.",examples:["gamma(4)","3!","gamma(1/2)","sqrt(pi)"],seealso:["factorial"]}});var v8,g8=T(()=>{v8={name:"lgamma",category:"Probability",syntax:["lgamma(n)"],description:"Logarithm of the gamma function for real, positive numbers and complex numbers, using Lanczos approximation for numbers and Stirling series for complex numbers.",examples:["lgamma(4)","lgamma(1/2)","lgamma(i)","lgamma(complex(1.1, 2))"],seealso:["gamma"]}});var y8,S8=T(()=>{y8={name:"kldivergence",category:"Probability",syntax:["kldivergence(x, y)"],description:"Calculate the Kullback-Leibler (KL) divergence  between two distributions.",examples:["kldivergence([0.7,0.5,0.4], [0.2,0.9,0.5])"],seealso:[]}});var w8,T8=T(()=>{w8={name:"multinomial",category:"Probability",syntax:["multinomial(A)"],description:"Multinomial Coefficients compute the number of ways of picking a1, a2, ..., ai unordered outcomes from `n` possibilities. multinomial takes one array of integers as an argument. 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Returns 1 when x > y, -1 when x < y, and 0 when x == y.",examples:["compare(2, 3)","compare(3, 2)","compare(2, 2)","compare(5cm, 40mm)","compare(2, [1, 2, 3])"],seealso:["equal","unequal","smaller","smallerEq","largerEq","compareNatural","compareText"]}});var B8,_8=T(()=>{B8={name:"compareNatural",category:"Relational",syntax:["compareNatural(x, y)"],description:"Compare two values of any type in a deterministic, natural way. Returns 1 when x > y, -1 when x < y, and 0 when x == y.",examples:["compareNatural(2, 3)","compareNatural(3, 2)","compareNatural(2, 2)","compareNatural(5cm, 40mm)",'compareNatural("2", "10")',"compareNatural(2 + 3i, 2 + 4i)","compareNatural([1, 2, 4], [1, 2, 3])","compareNatural([1, 5], [1, 2, 3])","compareNatural([1, 2], [1, 2])","compareNatural({a: 2}, {a: 4})"],seealso:["equal","unequal","smaller","smallerEq","largerEq","compare","compareText"]}});var P8,k8=T(()=>{P8={name:"compareText",category:"Relational",syntax:["compareText(x, y)"],description:"Compare two strings lexically. Comparison is case sensitive. Returns 1 when x > y, -1 when x < y, and 0 when x == y.",examples:['compareText("B", "A")','compareText("A", "B")','compareText("A", "A")','compareText("2", "10")','compare("2", "10")',"compare(2, 10)",'compareNatural("2", "10")','compareText("B", ["A", "B", "C"])'],seealso:["compare","compareNatural"]}});var L8,I8=T(()=>{L8={name:"deepEqual",category:"Relational",syntax:["deepEqual(x, y)"],description:"Check equality of two matrices element wise. Returns true if the size of both matrices is equal and when and each of the elements are equal.",examples:["deepEqual([1,3,4], [1,3,4])","deepEqual([1,3,4], [1,3])"],seealso:["equal","unequal","smaller","larger","smallerEq","largerEq","compare"]}});var z8,q8=T(()=>{z8={name:"equal",category:"Relational",syntax:["x == y","equal(x, y)"],description:"Check equality of two values. Returns true if the values are equal, and false if not.",examples:["2+2 == 3","2+2 == 4","a = 3.2","b = 6-2.8","a == b","50cm == 0.5m"],seealso:["unequal","smaller","larger","smallerEq","largerEq","compare","deepEqual","equalText"]}});var U8,H8=T(()=>{U8={name:"equalText",category:"Relational",syntax:["equalText(x, y)"],description:"Check equality of two strings. Comparison is case sensitive. Returns true if the values are equal, and false if not.",examples:['equalText("Hello", "Hello")','equalText("a", "A")','equal("2e3", "2000")','equalText("2e3", "2000")','equalText("B", ["A", "B", "C"])'],seealso:["compare","compareNatural","compareText","equal"]}});var W8,V8=T(()=>{W8={name:"larger",category:"Relational",syntax:["x > y","larger(x, y)"],description:"Check if value x is larger than y. Returns true if x is larger than y, and false if not.",examples:["2 > 3","5 > 2*2","a = 3.3","b = 6-2.8","(a > b)","(b < a)","5 cm > 2 inch"],seealso:["equal","unequal","smaller","smallerEq","largerEq","compare"]}});var G8,$8=T(()=>{G8={name:"largerEq",category:"Relational",syntax:["x >= y","largerEq(x, y)"],description:"Check if value x is larger or equal to y. Returns true if x is larger or equal to y, and false if not.",examples:["2 >= 1+1","2 > 1+1","a = 3.2","b = 6-2.8","(a >= b)"],seealso:["equal","unequal","smallerEq","smaller","compare"]}});var K8,Q8=T(()=>{K8={name:"smaller",category:"Relational",syntax:["x < y","smaller(x, y)"],description:"Check if value x is smaller than value y. Returns true if x is smaller than y, and false if not.",examples:["2 < 3","5 < 2*2","a = 3.3","b = 6-2.8","(a < b)","5 cm < 2 inch"],seealso:["equal","unequal","larger","smallerEq","largerEq","compare"]}});var Z8,Y8=T(()=>{Z8={name:"smallerEq",category:"Relational",syntax:["x <= y","smallerEq(x, y)"],description:"Check if value x is smaller or equal to value y. Returns true if x is smaller than y, and false if not.",examples:["2 <= 1+1","2 < 1+1","a = 3.2","b = 6-2.8","(a <= b)"],seealso:["equal","unequal","larger","smaller","largerEq","compare"]}});var X8,J8=T(()=>{X8={name:"unequal",category:"Relational",syntax:["x != y","unequal(x, y)"],description:"Check unequality of two values. Returns true if the values are unequal, and false if they are equal.",examples:["2+2 != 3","2+2 != 4","a = 3.2","b = 6-2.8","a != b","50cm != 0.5m","5 cm != 2 inch"],seealso:["equal","smaller","larger","smallerEq","largerEq","compare","deepEqual"]}});var j8,e5=T(()=>{j8={name:"setCartesian",category:"Set",syntax:["setCartesian(set1, set2)"],description:"Create the cartesian product of two (multi)sets. Multi-dimension arrays will be converted to single-dimension arrays and the values will be sorted in ascending order before the operation.",examples:["setCartesian([1, 2], [3, 4])"],seealso:["setUnion","setIntersect","setDifference","setPowerset"]}});var r5,t5=T(()=>{r5={name:"setDifference",category:"Set",syntax:["setDifference(set1, set2)"],description:"Create the difference of two (multi)sets: every element of set1, that is not the element of set2. Multi-dimension arrays will be converted to single-dimension arrays before the operation.",examples:["setDifference([1, 2, 3, 4], [3, 4, 5, 6])","setDifference([[1, 2], [3, 4]], [[3, 4], [5, 6]])"],seealso:["setUnion","setIntersect","setSymDifference"]}});var o5,a5=T(()=>{o5={name:"setDistinct",category:"Set",syntax:["setDistinct(set)"],description:"Collect the distinct elements of a multiset. A multi-dimension array will be converted to a single-dimension array before the operation.",examples:["setDistinct([1, 1, 1, 2, 2, 3])"],seealso:["setMultiplicity"]}});var n5,i5=T(()=>{n5={name:"setIntersect",category:"Set",syntax:["setIntersect(set1, set2)"],description:"Create the intersection of two (multi)sets. Multi-dimension arrays will be converted to single-dimension arrays before the operation.",examples:["setIntersect([1, 2, 3, 4], [3, 4, 5, 6])","setIntersect([[1, 2], [3, 4]], [[3, 4], [5, 6]])"],seealso:["setUnion","setDifference"]}});var f5,u5=T(()=>{f5={name:"setIsSubset",category:"Set",syntax:["setIsSubset(set1, set2)"],description:"Check whether a (multi)set is a subset of another (multi)set: every element of set1 is the element of set2. Multi-dimension arrays will be converted to single-dimension arrays before the operation.",examples:["setIsSubset([1, 2], [3, 4, 5, 6])","setIsSubset([3, 4], [3, 4, 5, 6])"],seealso:["setUnion","setIntersect","setDifference"]}});var s5,l5=T(()=>{s5={name:"setMultiplicity",category:"Set",syntax:["setMultiplicity(element, set)"],description:"Count the multiplicity of an element in a multiset. A multi-dimension array will be converted to a single-dimension array before the operation.",examples:["setMultiplicity(1, [1, 2, 2, 4])","setMultiplicity(2, [1, 2, 2, 4])"],seealso:["setDistinct","setSize"]}});var d5,p5=T(()=>{d5={name:"setPowerset",category:"Set",syntax:["setPowerset(set)"],description:"Create the powerset of a (multi)set: the powerset contains very possible subsets of a (multi)set. A multi-dimension array will be converted to a single-dimension array before the operation.",examples:["setPowerset([1, 2, 3])"],seealso:["setCartesian"]}});var m5,c5=T(()=>{m5={name:"setSize",category:"Set",syntax:["setSize(set)","setSize(set, unique)"],description:'Count the number of elements of a (multi)set. When the second parameter "unique" is true, count only the unique values. A multi-dimension array will be converted to a single-dimension array before the operation.',examples:["setSize([1, 2, 2, 4])","setSize([1, 2, 2, 4], true)"],seealso:["setUnion","setIntersect","setDifference"]}});var x5,h5=T(()=>{x5={name:"setSymDifference",category:"Set",syntax:["setSymDifference(set1, set2)"],description:"Create the symmetric difference of two (multi)sets. Multi-dimension arrays will be converted to single-dimension arrays before the operation.",examples:["setSymDifference([1, 2, 3, 4], [3, 4, 5, 6])","setSymDifference([[1, 2], [3, 4]], [[3, 4], [5, 6]])"],seealso:["setUnion","setIntersect","setDifference"]}});var v5,g5=T(()=>{v5={name:"setUnion",category:"Set",syntax:["setUnion(set1, set2)"],description:"Create the union of two (multi)sets. Multi-dimension arrays will be converted to single-dimension arrays before the operation.",examples:["setUnion([1, 2, 3, 4], [3, 4, 5, 6])","setUnion([[1, 2], [3, 4]], [[3, 4], [5, 6]])"],seealso:["setIntersect","setDifference"]}});var y5,S5=T(()=>{y5={name:"zpk2tf",category:"Signal",syntax:["zpk2tf(z, p, k)"],description:"Compute the transfer function of a zero-pole-gain model.",examples:["zpk2tf([1, 2], [-1, -2], 1)","zpk2tf([1, 2], [-1, -2])","zpk2tf([1 - 3i, 2 + 2i], [-1, -2])"],seealso:[]}});var w5,T5=T(()=>{w5={name:"freqz",category:"Signal",syntax:["freqz(b, a)","freqz(b, a, w)"],description:"Calculates the frequency response of a filter given its numerator and denominator coefficients.",examples:["freqz([1, 2], [1, 2, 3])","freqz([1, 2], [1, 2, 3], [0, 1])","freqz([1, 2], [1, 2, 3], 512)"],seealso:[]}});var b5,D5=T(()=>{b5={name:"erf",category:"Special",syntax:["erf(x)"],description:"Compute the erf function of a value using a rational Chebyshev approximations for different intervals of x",examples:["erf(0.2)","erf(-0.5)","erf(4)"],seealso:[]}});var A5,O5=T(()=>{A5={name:"zeta",category:"Special",syntax:["zeta(s)"],description:"Compute the Riemann Zeta Function using an infinite series and Riemann's Functional Equation for the entire complex plane",examples:["zeta(0.2)","zeta(-0.5)","zeta(4)"],seealso:[]}});var C5,R5=T(()=>{C5={name:"mad",category:"Statistics",syntax:["mad(a, b, c, ...)","mad(A)"],description:"Compute the median absolute deviation of a matrix or a list with values. The median absolute deviation is defined as the median of the absolute deviations from the median.",examples:["mad(10, 20, 30)","mad([1, 2, 3])"],seealso:["mean","median","std","abs"]}});var N5,M5=T(()=>{N5={name:"max",category:"Statistics",syntax:["max(a, b, c, ...)","max(A)","max(A, dimension)"],description:"Compute the maximum value of a list of values.",examples:["max(2, 3, 4, 1)","max([2, 3, 4, 1])","max([2, 5; 4, 3])","max([2, 5; 4, 3], 1)","max([2, 5; 4, 3], 2)","max(2.7, 7.1, -4.5, 2.0, 4.1)","min(2.7, 7.1, -4.5, 2.0, 4.1)"],seealso:["mean","median","min","prod","std","sum","variance"]}});var E5,F5=T(()=>{E5={name:"mean",category:"Statistics",syntax:["mean(a, b, c, ...)","mean(A)","mean(A, dimension)"],description:"Compute the arithmetic mean of a list of values.",examples:["mean(2, 3, 4, 1)","mean([2, 3, 4, 1])","mean([2, 5; 4, 3])","mean([2, 5; 4, 3], 1)","mean([2, 5; 4, 3], 2)","mean([1.0, 2.7, 3.2, 4.0])"],seealso:["max","median","min","prod","std","sum","variance"]}});var B5,_5=T(()=>{B5={name:"median",category:"Statistics",syntax:["median(a, b, c, ...)","median(A)"],description:"Compute the median of all values. The values are sorted and the middle value is returned. In case of an even number of values, the average of the two middle values is returned.",examples:["median(5, 2, 7)","median([3, -1, 5, 7])"],seealso:["max","mean","min","prod","std","sum","variance","quantileSeq"]}});var P5,k5=T(()=>{P5={name:"min",category:"Statistics",syntax:["min(a, b, c, ...)","min(A)","min(A, dimension)"],description:"Compute the minimum value of a list of values.",examples:["min(2, 3, 4, 1)","min([2, 3, 4, 1])","min([2, 5; 4, 3])","min([2, 5; 4, 3], 1)","min([2, 5; 4, 3], 2)","min(2.7, 7.1, -4.5, 2.0, 4.1)","max(2.7, 7.1, -4.5, 2.0, 4.1)"],seealso:["max","mean","median","prod","std","sum","variance"]}});var L5,I5=T(()=>{L5={name:"mode",category:"Statistics",syntax:["mode(a, b, c, ...)","mode(A)","mode(A, a, b, B, c, ...)"],description:"Computes the mode of all values as an array. In case mode being more than one, multiple values are returned in an array.",examples:["mode(2, 1, 4, 3, 1)","mode([1, 2.7, 3.2, 4, 2.7])","mode(1, 4, 6, 1, 6)"],seealso:["max","mean","min","median","prod","std","sum","variance"]}});var z5,q5=T(()=>{z5={name:"prod",category:"Statistics",syntax:["prod(a, b, c, ...)","prod(A)"],description:"Compute the product of all values.",examples:["prod(2, 3, 4)","prod([2, 3, 4])","prod([2, 5; 4, 3])"],seealso:["max","mean","min","median","min","std","sum","variance"]}});var U5,H5=T(()=>{U5={name:"quantileSeq",category:"Statistics",syntax:["quantileSeq(A, prob[, sorted])","quantileSeq(A, [prob1, prob2, ...][, sorted])","quantileSeq(A, N[, sorted])"],description:`Compute the prob order quantile of a matrix or a list with values. The sequence is sorted and the middle value is returned. Supported types of sequence values are: Number, BigNumber, Unit Supported types of probability are: Number, BigNumber. 
+
+In case of a (multi dimensional) array or matrix, the prob order quantile of all elements will be calculated.`,examples:["quantileSeq([3, -1, 5, 7], 0.5)","quantileSeq([3, -1, 5, 7], [1/3, 2/3])","quantileSeq([3, -1, 5, 7], 2)","quantileSeq([-1, 3, 5, 7], 0.5, true)"],seealso:["mean","median","min","max","prod","std","sum","variance"]}});var W5,V5=T(()=>{W5={name:"std",category:"Statistics",syntax:["std(a, b, c, ...)","std(A)","std(A, dimension)","std(A, normalization)","std(A, dimension, normalization)"],description:'Compute the standard deviation of all values, defined as std(A) = sqrt(variance(A)). 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+/*! Bundled license information:
+
+decimal.js/decimal.mjs:
+  (*!
+   *  decimal.js v10.5.0
+   *  An arbitrary-precision Decimal type for JavaScript.
+   *  https://github.com/MikeMcl/decimal.js
+   *  Copyright (c) 2025 Michael Mclaughlin <M8ch88l@gmail.com>
+   *  MIT Licence
+   *)
+*/
+//# sourceMappingURL=jbrowse-plugin-graphgenomeviewer.umd.production.min.js.map