jbrowse-plugin-graphgenomeviewer 1.0.0 → 3.0.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +674 -0
- package/README.md +202 -24
- package/dist/chunks/AddTrackWorkflow-Y3OBHM33.js +2 -0
- package/dist/chunks/AddTrackWorkflow-Y3OBHM33.js.map +7 -0
- package/dist/chunks/GbzBaseSyntenyAdapter-EFIOI2SN.js +8 -0
- package/dist/chunks/GbzBaseSyntenyAdapter-EFIOI2SN.js.map +7 -0
- package/dist/chunks/GraphGenomeView-UD5WCV3Q.js +14 -0
- package/dist/chunks/GraphGenomeView-UD5WCV3Q.js.map +7 -0
- package/dist/chunks/MinigraphBubbleAdapter-B75VQK7T.js +2 -0
- package/dist/chunks/MinigraphBubbleAdapter-B75VQK7T.js.map +7 -0
- package/dist/chunks/RgfaTabixAdapter-IT7I5RR3.js +3 -0
- package/dist/chunks/RgfaTabixAdapter-IT7I5RR3.js.map +7 -0
- package/dist/chunks/bandage-layout-FIOZ7B3E.js +1660 -0
- package/dist/chunks/bandage-layout-FIOZ7B3E.js.map +7 -0
- package/dist/chunks/chunk-D7XFR2IV.js +2 -0
- package/dist/chunks/chunk-D7XFR2IV.js.map +7 -0
- package/dist/chunks/chunk-F4C3BEPV.js +2 -0
- package/dist/chunks/chunk-F4C3BEPV.js.map +7 -0
- package/dist/chunks/chunk-FCWXYIFC.js +2 -0
- package/dist/chunks/chunk-FCWXYIFC.js.map +7 -0
- package/dist/chunks/chunk-FY3BTKY4.js +2 -0
- package/dist/chunks/chunk-FY3BTKY4.js.map +7 -0
- package/dist/chunks/chunk-J4OLMLS5.js +2 -0
- package/dist/chunks/chunk-J4OLMLS5.js.map +7 -0
- package/dist/chunks/chunk-JCG7RLMB.js +2 -0
- package/dist/chunks/chunk-JCG7RLMB.js.map +7 -0
- package/dist/chunks/chunk-KWAXLUPQ.js +2 -0
- package/dist/chunks/chunk-KWAXLUPQ.js.map +7 -0
- package/dist/chunks/chunk-LGKM2PZH.js +2 -0
- package/dist/chunks/chunk-LGKM2PZH.js.map +7 -0
- package/dist/chunks/chunk-TN6FK5UD.js +2 -0
- package/dist/chunks/chunk-TN6FK5UD.js.map +7 -0
- package/dist/chunks/chunk-X3X74OGB.js +2 -0
- package/dist/chunks/chunk-X3X74OGB.js.map +7 -0
- package/dist/chunks/chunk-XEJ47DLD.js +2 -0
- package/dist/chunks/chunk-XEJ47DLD.js.map +7 -0
- package/dist/chunks/chunk-ZNGDWZ6Z.js +2 -0
- package/dist/chunks/chunk-ZNGDWZ6Z.js.map +7 -0
- package/dist/chunks/executeDiagonalize-XMPEDHVZ.js +2 -0
- package/dist/chunks/executeDiagonalize-XMPEDHVZ.js.map +7 -0
- package/dist/jbrowse-plugin-graphgenomeviewer.esm.js +3 -0
- package/dist/jbrowse-plugin-graphgenomeviewer.esm.js.map +7 -0
- package/package.json +94 -49
- package/src/GbzBaseSyntenyAdapter/GbzBaseSyntenyAdapter.test.ts +427 -0
- package/src/GbzBaseSyntenyAdapter/GbzBaseSyntenyAdapter.ts +461 -0
- package/src/GbzBaseSyntenyAdapter/configSchema.ts +181 -0
- package/src/GbzBaseSyntenyAdapter/index.ts +27 -0
- package/src/GbzBaseSyntenyAdapter/test_data/micb-kir3dl1.gbz.db +0 -0
- package/src/GbzBaseSyntenyAdapter/test_data/micb-kir3dl1.haplotype-index.db +0 -0
- package/src/GetSubgraph.test.ts +193 -0
- package/src/GetSubgraph.ts +93 -0
- package/src/GraphAddTrackWorkflow/AddTrackWorkflow.tsx +167 -0
- package/src/GraphAddTrackWorkflow/buildTrackConfig.test.ts +150 -0
- package/src/GraphAddTrackWorkflow/buildTrackConfig.ts +114 -0
- package/src/GraphAddTrackWorkflow/index.ts +20 -0
- package/src/GraphComputeLayout.ts +46 -0
- package/src/GraphGenomeView/anchoredNodes.ts +101 -0
- package/src/GraphGenomeView/bubbleSpreads.ts +102 -0
- package/src/GraphGenomeView/bubbles/bubbleHalos.test.ts +58 -0
- package/src/GraphGenomeView/bubbles/bubbleHalos.ts +149 -0
- package/src/GraphGenomeView/bubbles/bubbleRoutes.test.ts +141 -0
- package/src/GraphGenomeView/bubbles/bubblesFromGraph.test.ts +239 -0
- package/src/GraphGenomeView/bubbles/bubblesFromGraph.ts +210 -0
- package/src/GraphGenomeView/bubbles/classifyBubble.test.ts +172 -0
- package/src/GraphGenomeView/bubbles/classifyBubble.ts +138 -0
- package/src/GraphGenomeView/bubbles/popBubble.test.ts +73 -0
- package/src/GraphGenomeView/bubbles/popBubble.ts +26 -0
- package/src/GraphGenomeView/colorSchemes.ts +36 -0
- package/src/GraphGenomeView/components/BubbleHalos.tsx +162 -0
- package/src/GraphGenomeView/components/BubbleOverlay.tsx +181 -0
- package/src/GraphGenomeView/components/ColorSchemeSelect.tsx +41 -0
- package/src/GraphGenomeView/components/GenePins.tsx +107 -0
- package/src/GraphGenomeView/components/GraphCanvas.tsx +759 -0
- package/src/GraphGenomeView/components/GraphGenomeView.test.tsx +77 -0
- package/src/GraphGenomeView/components/GraphGenomeView.tsx +18 -17
- package/src/GraphGenomeView/components/GraphLoadStatus.tsx +84 -0
- package/src/GraphGenomeView/components/GraphSettingsDialog.tsx +327 -0
- package/src/GraphGenomeView/components/GraphStats.tsx +82 -0
- package/src/GraphGenomeView/components/GraphToolbar.tsx +84 -0
- package/src/GraphGenomeView/components/ImportForm.tsx +124 -0
- package/src/GraphGenomeView/components/LabelChip.tsx +65 -0
- package/src/GraphGenomeView/components/LayoutSelect.tsx +56 -0
- package/src/GraphGenomeView/components/RepeatSelect.tsx +51 -0
- package/src/GraphGenomeView/components/SettingsMenu.tsx +82 -0
- package/src/GraphGenomeView/components/SubgraphContextSelect.tsx +75 -0
- package/src/GraphGenomeView/components/SubgraphHaplotypesField.tsx +86 -0
- package/src/GraphGenomeView/components/WalkRowsOverlay.tsx +252 -0
- package/src/GraphGenomeView/components/WalkSelect.tsx +51 -0
- package/src/GraphGenomeView/components/overlayLabels.test.ts +56 -0
- package/src/GraphGenomeView/components/overlayLabels.ts +75 -0
- package/src/GraphGenomeView/deletionEdges.test.ts +198 -0
- package/src/GraphGenomeView/deletionEdges.ts +217 -0
- package/src/GraphGenomeView/genes/geneFeatures.ts +107 -0
- package/src/GraphGenomeView/genes/genePins.ts +130 -0
- package/src/GraphGenomeView/genes/genes.test.ts +153 -0
- package/src/GraphGenomeView/gfa/gfaConverter.test.ts +394 -0
- package/src/GraphGenomeView/gfa/gfaConverter.ts +235 -0
- package/src/GraphGenomeView/graphLabels.budget.test.ts +36 -0
- package/src/GraphGenomeView/graphLabels.test.ts +548 -0
- package/src/GraphGenomeView/graphLabels.ts +640 -0
- package/src/GraphGenomeView/index.ts +29 -7
- package/src/GraphGenomeView/laneRamp.test.ts +97 -0
- package/src/GraphGenomeView/laneRamp.ts +87 -0
- package/src/GraphGenomeView/launchKeys.test.ts +63 -0
- package/src/GraphGenomeView/layout/anchoredLayout.test.ts +213 -0
- package/src/GraphGenomeView/layout/anchoredLayout.ts +80 -0
- package/src/GraphGenomeView/layout/bubbleCrossing.test.ts +190 -0
- package/src/GraphGenomeView/layout/drawnScale.ts +199 -0
- package/src/GraphGenomeView/layout/mergeRuns.test.ts +100 -0
- package/src/GraphGenomeView/layout/mergeRuns.ts +203 -0
- package/src/GraphGenomeView/layout/orderedLayout.test.ts +212 -0
- package/src/GraphGenomeView/layout/orderedLayout.ts +396 -0
- package/src/GraphGenomeView/layout/orientToReference.test.ts +110 -0
- package/src/GraphGenomeView/layout/orientToReference.ts +79 -0
- package/src/GraphGenomeView/layout/placeOffReference.ts +147 -0
- package/src/GraphGenomeView/layout/referenceSeeds.test.ts +79 -0
- package/src/GraphGenomeView/layout/referenceSeeds.ts +89 -0
- package/src/GraphGenomeView/layout/rowSpacing.ts +5 -0
- package/src/GraphGenomeView/layout/sampleRowLayout.test.ts +318 -0
- package/src/GraphGenomeView/layout/sampleRowLayout.ts +134 -0
- package/src/GraphGenomeView/layout/variantMapLayout.test.ts +59 -0
- package/src/GraphGenomeView/layout/variantMapLayout.ts +20 -0
- package/src/GraphGenomeView/layout/walkRowLayout.ts +54 -0
- package/src/GraphGenomeView/layout/walkRows.test.ts +178 -0
- package/src/GraphGenomeView/layout/walkRows.ts +177 -0
- package/src/GraphGenomeView/layoutModes.ts +131 -0
- package/src/GraphGenomeView/model.test.ts +2696 -0
- package/src/GraphGenomeView/model.ts +2672 -94
- package/src/GraphGenomeView/nodeWidths.ts +67 -0
- package/src/GraphGenomeView/pathAnchoring.test.ts +252 -0
- package/src/GraphGenomeView/pathAnchoring.ts +164 -0
- package/src/GraphGenomeView/pathColors.test.ts +83 -0
- package/src/GraphGenomeView/pathColors.ts +122 -0
- package/src/GraphGenomeView/referenceSpan.test.ts +84 -0
- package/src/GraphGenomeView/referenceSpan.ts +133 -0
- package/src/GraphGenomeView/renderPasses.bench.ts +172 -0
- package/src/GraphGenomeView/renderPipeline.test.ts +226 -0
- package/src/GraphGenomeView/renderer/Canvas2DRenderer.test.ts +205 -0
- package/src/GraphGenomeView/renderer/Canvas2DRenderer.ts +246 -0
- package/src/GraphGenomeView/renderer/GeometryBuilder.test.ts +723 -0
- package/src/GraphGenomeView/renderer/GeometryBuilder.ts +882 -0
- package/src/GraphGenomeView/renderer/GraphRenderer.ts +13 -0
- package/src/GraphGenomeView/renderer/colorBits.ts +43 -0
- package/src/GraphGenomeView/renderer/recordingCanvas.ts +64 -0
- package/src/GraphGenomeView/renderer/types.ts +84 -0
- package/src/GraphGenomeView/renderer/walkFade.test.ts +100 -0
- package/src/GraphGenomeView/repeats/repeatFeatures.test.ts +114 -0
- package/src/GraphGenomeView/repeats/repeatFeatures.ts +202 -0
- package/src/GraphGenomeView/repeats/test_data/abca7_trgt_walks.json +575 -0
- package/src/GraphGenomeView/repeats/walkCalls.test.ts +127 -0
- package/src/GraphGenomeView/repeats/walkCalls.ts +132 -0
- package/src/GraphGenomeView/stress.test.ts +214 -0
- package/src/GraphGenomeView/subgraphLoad.test.ts +245 -0
- package/src/GraphGenomeView/types.ts +141 -0
- package/src/GraphGenomeView/util/SpatialIndex.test.ts +73 -0
- package/src/GraphGenomeView/util/SpatialIndex.ts +312 -0
- package/src/GraphGenomeView/util/edgeCurves.test.ts +93 -0
- package/src/GraphGenomeView/util/edgeCurves.ts +94 -0
- package/src/GraphGenomeView/util/geometry.test.ts +447 -0
- package/src/GraphGenomeView/util/geometry.ts +656 -0
- package/src/GraphGenomeView/util/hitDetection.test.ts +307 -0
- package/src/GraphGenomeView/util/hitDetection.ts +330 -0
- package/src/GraphGenomeView/util/wheelZoom.test.ts +40 -0
- package/src/GraphGenomeView/util/wheelZoom.ts +26 -0
- package/src/GraphGenomeView/walkHighlight.test.ts +54 -0
- package/src/GraphGenomeView/walkHighlight.ts +56 -0
- package/src/LaunchGraphGenomeView.ts +46 -0
- package/src/MinigraphBubbleAdapter/MinigraphBubbleAdapter.test.ts +139 -0
- package/src/MinigraphBubbleAdapter/MinigraphBubbleAdapter.ts +86 -0
- package/src/MinigraphBubbleAdapter/bubbleLine.ts +92 -0
- package/src/MinigraphBubbleAdapter/configSchema.ts +109 -0
- package/src/MinigraphBubbleAdapter/index.ts +22 -0
- package/src/MinigraphBubbleAdapter/test_data/hprc_bubbles_mhc.bed.gz +0 -0
- package/src/MinigraphBubbleAdapter/test_data/hprc_bubbles_mhc.bed.gz.tbi +0 -0
- package/src/RgfaTabixAdapter/RgfaTabixAdapter.test.ts +285 -0
- package/src/RgfaTabixAdapter/RgfaTabixAdapter.ts +194 -0
- package/src/RgfaTabixAdapter/bubbleTier.test.ts +84 -0
- package/src/RgfaTabixAdapter/configSchema.ts +142 -0
- package/src/RgfaTabixAdapter/index.ts +24 -0
- package/src/RgfaTabixAdapter/rgfaBed.test.ts +158 -0
- package/src/RgfaTabixAdapter/rgfaBed.ts +156 -0
- package/src/RgfaTabixAdapter/test_data/bubble_tier_chrY.links.bed.gz +0 -0
- package/src/RgfaTabixAdapter/test_data/bubble_tier_chrY.links.bed.gz.tbi +0 -0
- package/src/RgfaTabixAdapter/test_data/bubble_tier_chrY.segs.bed.gz +0 -0
- package/src/RgfaTabixAdapter/test_data/bubble_tier_chrY.segs.bed.gz.tbi +0 -0
- package/src/RgfaTabixAdapter/test_data/pggb_ecoli.links.bed.gz +0 -0
- package/src/RgfaTabixAdapter/test_data/pggb_ecoli.links.bed.gz.tbi +0 -0
- package/src/RgfaTabixAdapter/test_data/pggb_ecoli.segs.bed.gz +0 -0
- package/src/RgfaTabixAdapter/test_data/pggb_ecoli.segs.bed.gz.tbi +0 -0
- package/src/RgfaTabixAdapter/test_data/rgfa_ecoli.links.bed.gz +0 -0
- package/src/RgfaTabixAdapter/test_data/rgfa_ecoli.links.bed.gz.tbi +0 -0
- package/src/RgfaTabixAdapter/test_data/rgfa_ecoli.segs.bed.gz +0 -0
- package/src/RgfaTabixAdapter/test_data/rgfa_ecoli.segs.bed.gz.tbi +0 -0
- package/src/alleleProjection/projectAlleles.test.ts +75 -0
- package/src/alleleProjection/projectAlleles.ts +190 -0
- package/src/bandage/README.md +121 -0
- package/src/bandage/bandage-layout.d.ts +14 -0
- package/src/bandage/bandage-layout.js +0 -0
- package/src/bandage/native/CMakeLists.txt +45 -0
- package/src/bandage/native/include/graph.h +188 -0
- package/src/bandage/native/include/graphlayout.h +74 -0
- package/src/bandage/native/include/settings.h +86 -0
- package/src/bandage/native/include/types.h +56 -0
- package/src/bandage/native/src/bindings.cpp +164 -0
- package/src/bandage/native/src/graphlayout.cpp +621 -0
- package/src/bandage/resizableDecode.test.ts +58 -0
- package/src/gfa-core/gfaParser.bench.ts +55 -0
- package/src/gfa-core/gfaParser.test.ts +168 -0
- package/src/gfa-core/gfaParser.ts +237 -0
- package/src/gfa-core/index.ts +10 -0
- package/src/hoverSync/GraphNodeHighlight.tsx +62 -0
- package/src/hoverSync/graphViewHighlights.test.ts +158 -0
- package/src/hoverSync/graphViewHighlights.ts +119 -0
- package/src/hoverSync/index.test.tsx +36 -0
- package/src/hoverSync/index.tsx +19 -0
- package/src/hoverSync/lgvHover.test.ts +202 -0
- package/src/hoverSync/lgvHover.ts +136 -0
- package/src/index.ts +46 -15
- package/src/launchFromGraph/contributors.test.ts +197 -0
- package/src/launchFromGraph/contributors.ts +0 -0
- package/src/launchFromGraph/graphMenuItems.ts +211 -0
- package/src/launchFromGraph/launchFromGraph.test.ts +489 -0
- package/src/launchFromGraph/launchFromGraph.ts +265 -0
- package/src/launchFromGraph/launchTracks.test.ts +72 -0
- package/src/launchFromGraph/launchTracks.ts +50 -0
- package/src/launchFromGraph/linearViewTarget.test.ts +82 -0
- package/src/launchFromGraph/linearViewTarget.ts +75 -0
- package/src/launchFromGraph/syntenyTracks.ts +47 -0
- package/src/launchSubgraph/index.ts +152 -0
- package/src/launchSubgraph/launchSubgraph.test.ts +264 -0
- package/src/launchSubgraph/launchSubgraphView.ts +128 -0
- package/src/launchSubgraph/linearViewMenuItems.test.ts +176 -0
- package/src/launchSubgraph/linearViewMenuItems.ts +107 -0
- package/src/launchSubgraph/multiWayLaunch.test.ts +289 -0
- package/src/launchSubgraph/subgraphMenuItems.ts +73 -0
- package/src/launchSubgraph/subgraphTracks.test.ts +165 -0
- package/src/launchSubgraph/subgraphTracks.ts +151 -0
- package/src/launchSubgraph/testEnv.ts +258 -0
- package/src/loadBandage.ts +22 -0
- package/src/panSNTabix.test.ts +72 -0
- package/src/panSNTabix.ts +149 -0
- package/src/pansn.ts +106 -0
- package/src/pluginName.ts +3 -0
- package/src/synteny/ComparativeAdapterBase.ts +77 -0
- package/src/synteny/SyntenyFeature.ts +116 -0
- package/src/synteny/clipFeatureToRegion.test.ts +329 -0
- package/src/synteny/clipFeatureToRegion.ts +167 -0
- package/src/version.ts +1 -0
- package/dist/GraphGenomeView/components/FeatureDialog.d.ts +0 -5
- package/dist/GraphGenomeView/components/FeatureDialog.js +0 -18
- package/dist/GraphGenomeView/components/FeatureDialog.js.map +0 -1
- package/dist/GraphGenomeView/components/GraphGenomeView.d.ts +0 -6
- package/dist/GraphGenomeView/components/GraphGenomeView.js +0 -17
- package/dist/GraphGenomeView/components/GraphGenomeView.js.map +0 -1
- package/dist/GraphGenomeView/components/GraphPanel.d.ts +0 -6
- package/dist/GraphGenomeView/components/GraphPanel.js +0 -17
- package/dist/GraphGenomeView/components/GraphPanel.js.map +0 -1
- package/dist/GraphGenomeView/components/Header.d.ts +0 -6
- package/dist/GraphGenomeView/components/Header.js +0 -59
- package/dist/GraphGenomeView/components/Header.js.map +0 -1
- package/dist/GraphGenomeView/components/SettingsDialog.d.ts +0 -7
- package/dist/GraphGenomeView/components/SettingsDialog.js +0 -24
- package/dist/GraphGenomeView/components/SettingsDialog.js.map +0 -1
- package/dist/GraphGenomeView/index.d.ts +0 -2
- package/dist/GraphGenomeView/index.js +0 -15
- package/dist/GraphGenomeView/index.js.map +0 -1
- package/dist/GraphGenomeView/model.d.ts +0 -80
- package/dist/GraphGenomeView/model.js +0 -96
- package/dist/GraphGenomeView/model.js.map +0 -1
- package/dist/GraphGenomeView/util.d.ts +0 -1
- package/dist/GraphGenomeView/util.js +0 -8
- package/dist/GraphGenomeView/util.js.map +0 -1
- package/dist/index.d.ts +0 -8
- package/dist/index.js +0 -24
- package/dist/index.js.map +0 -1
- package/dist/jbrowse-plugin-graphgenomeviewer.umd.production.min.js +0 -67
- package/dist/jbrowse-plugin-graphgenomeviewer.umd.production.min.js.map +0 -7
- package/src/GraphGenomeView/components/FeatureDialog.tsx +0 -51
- package/src/GraphGenomeView/components/GraphPanel.tsx +0 -37
- package/src/GraphGenomeView/components/Header.tsx +0 -90
- package/src/GraphGenomeView/components/SettingsDialog.tsx +0 -71
- package/src/GraphGenomeView/util.ts +0 -7
- package/src/declare.d.ts +0 -1
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{
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"source": "rows: walkRows() over GbzBaseSyntenyAdapter.getSubgraph of hprc-v2.1-mc-grch38.gbz.db at chr19:1,049,407-1,050,096, the ABCA7 VNTR. calls: AL and SD of the one record in jbrowse.org/demos/hprc/hprc_abca7_trgt.vcf.gz, PacBio TRGT genotypes of the same samples (TRGTdb, Zenodo 8329210)",
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{ "label": "HG00099#1", "sample": "HG00099", "bp": 3183, "complete": true },
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{ "label": "HG00099#2", "sample": "HG00099", "bp": 388, "complete": true },
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{ "label": "HG00280#1", "sample": "HG00280", "bp": 1050, "complete": true },
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{ "label": "HG00280#2", "sample": "HG00280", "bp": 2679, "complete": true },
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{ "label": "HG00323#1", "sample": "HG00323", "bp": 2639, "complete": true },
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{ "label": "HG00544#2", "sample": "HG00544", "bp": 2625, "complete": true },
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{ "label": "HG00558#1", "sample": "HG00558", "bp": 3429, "complete": true },
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{ "label": "HG00558#2", "sample": "HG00558", "bp": 5359, "complete": true },
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{ "label": "HG00621#1", "sample": "HG00621", "bp": 1366, "complete": true },
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{ "label": "HG00621#2", "sample": "HG00621", "bp": 2642, "complete": true },
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{ "label": "HG00639#1", "sample": "HG00639", "bp": 2323, "complete": true },
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{ "label": "HG00639#2", "sample": "HG00639", "bp": 2386, "complete": true },
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{ "label": "HG00673#1", "sample": "HG00673", "bp": 1053, "complete": true },
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|
531
|
+
{ "bp": 821, "spanningReads": 1 },
|
|
532
|
+
{ "bp": 1808, "spanningReads": 3 }
|
|
533
|
+
],
|
|
534
|
+
"HG03942": [
|
|
535
|
+
{ "bp": 4401, "spanningReads": 2 },
|
|
536
|
+
{ "bp": 4748, "spanningReads": 1 }
|
|
537
|
+
],
|
|
538
|
+
"HG04115": [
|
|
539
|
+
{ "bp": 387, "spanningReads": 10 },
|
|
540
|
+
{ "bp": 1132, "spanningReads": 1 }
|
|
541
|
+
],
|
|
542
|
+
"HG04199": [
|
|
543
|
+
{ "bp": 1485, "spanningReads": 2 },
|
|
544
|
+
{ "bp": 8614, "spanningReads": 2 }
|
|
545
|
+
],
|
|
546
|
+
"HG04204": [
|
|
547
|
+
{ "bp": 2077, "spanningReads": 1 },
|
|
548
|
+
{ "bp": 4100, "spanningReads": 1 }
|
|
549
|
+
],
|
|
550
|
+
"HG04228": [
|
|
551
|
+
{ "bp": 1259, "spanningReads": 2 },
|
|
552
|
+
{ "bp": 1270, "spanningReads": 2 }
|
|
553
|
+
],
|
|
554
|
+
"NA18747": [
|
|
555
|
+
{ "bp": 678, "spanningReads": 2 },
|
|
556
|
+
{ "bp": 1499, "spanningReads": 4 }
|
|
557
|
+
],
|
|
558
|
+
"NA18971": [
|
|
559
|
+
{ "bp": 2358, "spanningReads": 1 },
|
|
560
|
+
{ "bp": 2396, "spanningReads": 1 }
|
|
561
|
+
],
|
|
562
|
+
"NA19043": [
|
|
563
|
+
{ "bp": 2951, "spanningReads": 1 },
|
|
564
|
+
{ "bp": 2951, "spanningReads": 2 }
|
|
565
|
+
],
|
|
566
|
+
"NA20752": [
|
|
567
|
+
{ "bp": 1530, "spanningReads": 2 },
|
|
568
|
+
{ "bp": 1774, "spanningReads": 3 }
|
|
569
|
+
],
|
|
570
|
+
"NA20805": [
|
|
571
|
+
{ "bp": 774, "spanningReads": 2 },
|
|
572
|
+
{ "bp": 775, "spanningReads": 1 }
|
|
573
|
+
]
|
|
574
|
+
}
|
|
575
|
+
}
|