issue-flow 0.7.1 → 0.7.3

package/dist/chunk-7YS3J4A2.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/issues/registry.ts","../src/issues/hash.ts","../src/issues/providers/github.ts","../src/issues/providers/local.ts","../src/issues/bootstrap.ts","../src/issues/resolver.ts","../src/issues/context.ts"],"sourcesContent":["import type { IssueProvider } from './provider.js';\nimport type { IssueSource } from './types.js';\n\n/**\n * Registry of Issue providers.\n *\n * Adding an origin is creating a provider file and registering one line here\n * (or from the caller's side), so nothing in src/commands/ needs to know the\n * list of sources.\n */\nconst providers = new Map<IssueSource, IssueProvider>();\n\n/**\n * Register a provider under its own `name`.\n *\n * Registering the same source twice replaces the previous entry, which is what\n * lets tests substitute a real provider with a fake one.\n */\nexport function registerProvider(provider: IssueProvider): void {\n  providers.set(provider.name, provider);\n}\n\n/** Sources currently registered, in registration order. */\nexport function getRegisteredSources(): IssueSource[] {\n  return [...providers.keys()];\n}\n\n/**\n * Look up a provider by origin.\n *\n * @throws when the origin is not registered, listing what is available so the\n * caller knows which sources they can pick instead.\n */\nexport function getProvider(source: IssueSource): IssueProvider {\n  const provider = providers.get(source);\n  if (provider === undefined) {\n    const available = getRegisteredSources();\n    const hint =\n      available.length > 0\n        ? `Available sources: ${available.join(', ')}.`\n        : 'No Issue providers are registered.';\n    throw new Error(`Unknown Issue source: '${source}'. ${hint}`);\n  }\n  return provider;\n}\n\n/** Drop every registration. Intended for test isolation. */\nexport function clearProviders(): void {\n  providers.clear();\n}\n","import { createHash } from 'node:crypto';\n\n/**\n * Content hashing shared by every Issue provider.\n *\n * The hash is what lets the resolver tell \"the local and the remote Issue are\n * the same demand\" from \"they diverged\", so it has to be stable across\n * platforms: Windows checkouts store CRLF, editors add or drop trailing\n * newlines, and neither should count as a content change.\n */\n\n/** Normalizes line endings (CRLF/CR to LF) and trims the edges. */\nfunction normalizeText(value: string): string {\n  return value.replace(/\\r\\n?/g, '\\n').trim();\n}\n\n/**\n * Returns `sha256:<hex>` for the given title and body.\n *\n * The payload is a canonical JSON object rather than a concatenation, so text\n * moved from the title into the body always changes the hash.\n */\nexport function hashIssueContent(title: string, body: string): string {\n  const payload = JSON.stringify({\n    title: normalizeText(title),\n    body: normalizeText(body),\n  });\n  const digest = createHash('sha256').update(payload, 'utf8').digest('hex');\n  return `sha256:${digest}`;\n}\n","import { run } from '../../utils/shell.js';\nimport { hashIssueContent } from '../hash.js';\nimport type { IssueProvider } from '../provider.js';\nimport type { Issue, IssueDraft, IssueState } from '../types.js';\n\n/** Fields requested from `gh issue view`, in the order the PRD specifies. */\nconst VIEW_FIELDS = 'number,title,body,labels,state,url,createdAt,updatedAt';\n\n/** Timeout for the availability probes, matching the `init` prerequisite checks. */\nconst PROBE_TIMEOUT_MS = 10_000;\n\n/**\n * gh reports a missing Issue on stderr with one of these phrasings. The match\n * must stay issue-specific: a bare /not found/ would also swallow\n * `gh: command not found`, turning a broken environment into \"issue absent\".\n * Anything else on a non-zero exit is a real failure (network, auth, gh not\n * installed) and must surface as a thrown error.\n */\nconst NOT_FOUND_PATTERN =\n  /could not resolve to an issue|no issues? found|issue not found|could not find any issue/i;\n\ninterface GhLabel {\n  name?: unknown;\n}\n\ninterface GhIssuePayload {\n  number?: unknown;\n  title?: unknown;\n  body?: unknown;\n  labels?: unknown;\n  state?: unknown;\n  url?: unknown;\n  createdAt?: unknown;\n  updatedAt?: unknown;\n}\n\nfunction normalizeState(state: unknown): IssueState {\n  return String(state ?? '').toUpperCase() === 'CLOSED' ? 'closed' : 'open';\n}\n\nfunction normalizeLabels(labels: unknown): string[] {\n  if (!Array.isArray(labels)) return [];\n  return labels\n    .map((label: GhLabel | string) => (typeof label === 'string' ? label : label?.name))\n    .filter((name): name is string => typeof name === 'string' && name.length > 0);\n}\n\nfunction toIssue(payload: GhIssuePayload): Issue {\n  const title = typeof payload.title === 'string' ? payload.title : '';\n  const body = typeof payload.body === 'string' ? payload.body : '';\n  const number = typeof payload.number === 'number' ? payload.number : null;\n  const url = typeof payload.url === 'string' && payload.url.length > 0 ? payload.url : null;\n\n  return {\n    id: number === null ? '' : String(number),\n    number,\n    title,\n    body,\n    labels: normalizeLabels(payload.labels),\n    state: normalizeState(payload.state),\n    source: 'github',\n    remoteRef: url,\n    createdAt: typeof payload.createdAt === 'string' ? payload.createdAt : '',\n    updatedAt: typeof payload.updatedAt === 'string' ? payload.updatedAt : '',\n    contentHash: hashIssueContent(title, body),\n    raw: payload,\n  };\n}\n\n/** Strip a leading `#` so both `23` and `#23` are accepted. */\nfunction normalizeId(id: string): string {\n  return id.trim().replace(/^#/, '');\n}\n\nfunction extractIssueNumber(output: string): string | null {\n  return output.match(/\\/issues\\/(\\d+)/)?.[1] ?? null;\n}\n\n/**\n * Issue provider backed by the GitHub CLI.\n *\n * Every call goes through `run` (execa, no shell) so tests can mock the shell\n * layer instead of the network, and so the Issue content is identical across\n * every pipeline phase.\n */\nexport class GitHubIssueProvider implements IssueProvider {\n  readonly name = 'github' as const;\n\n  /** True when gh is installed and authenticated. Never throws. */\n  async isAvailable(): Promise<boolean> {\n    try {\n      const version = await run('gh', ['--version'], { timeout: PROBE_TIMEOUT_MS });\n      if (version.exitCode !== 0) return false;\n\n      const auth = await run('gh', ['auth', 'status'], { timeout: PROBE_TIMEOUT_MS });\n      return auth.exitCode === 0;\n    } catch {\n      return false;\n    }\n  }\n\n  async get(id: string): Promise<Issue | null> {\n    const issueId = normalizeId(id);\n    const result = await run('gh', ['issue', 'view', issueId, '--json', VIEW_FIELDS]);\n\n    if (result.exitCode !== 0) {\n      const detail = (result.stderr || result.stdout).trim();\n      if (NOT_FOUND_PATTERN.test(detail)) return null;\n      throw new Error(\n        `Failed to fetch GitHub issue #${issueId}: ${detail || 'gh issue view failed'}`,\n      );\n    }\n\n    let payload: GhIssuePayload;\n    try {\n      payload = JSON.parse(result.stdout);\n    } catch {\n      throw new Error(\n        `Failed to parse gh output for issue #${issueId}: ${result.stdout.slice(0, 200)}`,\n      );\n    }\n\n    return toIssue(payload);\n  }\n\n  async create(draft: IssueDraft): Promise<Issue> {\n    const args = ['issue', 'create', '--title', draft.title, '--body', draft.body];\n    for (const label of draft.labels) {\n      args.push('--label', label);\n    }\n\n    const result = await run('gh', args);\n    if (result.exitCode !== 0) {\n      const detail = (result.stderr || result.stdout).trim();\n      throw new Error(`Failed to create GitHub issue: ${detail || 'gh issue create failed'}`);\n    }\n\n    const number = extractIssueNumber(result.stdout);\n    if (!number) {\n      throw new Error(\n        `GitHub issue creation did not report an issue URL: ${result.stdout.trim() || '(no output)'}`,\n      );\n    }\n\n    const created = await this.get(number);\n    if (!created) {\n      throw new Error(`GitHub issue #${number} was created but could not be read back`);\n    }\n    return created;\n  }\n\n  async close(id: string): Promise<void> {\n    const issueId = normalizeId(id);\n    const result = await run('gh', ['issue', 'close', issueId]);\n\n    if (result.exitCode !== 0) {\n      const detail = (result.stderr || result.stdout).trim();\n      throw new Error(\n        `Failed to close GitHub issue #${issueId}: ${detail || 'gh issue close failed'}`,\n      );\n    }\n  }\n}\n\n/** Shared instance; providers are stateless, so a singleton is enough. */\nexport const githubIssueProvider = new GitHubIssueProvider();\n","import { constants } from 'node:fs';\nimport { access, mkdir, readdir, readFile, stat, writeFile } from 'node:fs/promises';\nimport { dirname } from 'node:path';\nimport { ZodError } from 'zod';\nimport { isoNow } from '../../core/state-manager.js';\nimport { issueMetadataSchema } from '../../schemas.js';\nimport type { IssuePaths } from '../../storage/paths.js';\nimport { resolveIssuePaths, resolveProjectPaths } from '../../storage/resolve.js';\nimport { writeFileAtomic } from '../../utils/fs.js';\nimport { getProjectRoot } from '../../utils/git.js';\nimport { run } from '../../utils/shell.js';\nimport { hashIssueContent } from '../hash.js';\nimport type { IssueProvider } from '../provider.js';\nimport type { Issue, IssueDraft, IssueMetadata } from '../types.js';\n\n/** Timeout for the optional remote probes done while allocating an identifier. */\nconst REMOTE_PROBE_TIMEOUT_MS = 10_000;\n\nfunction isNotFound(err: unknown): boolean {\n  const code = (err as NodeJS.ErrnoException).code;\n  return code === 'ENOENT' || code === 'ENOTDIR';\n}\n\n/**\n * True when `dir` already is a writable directory, or does not exist yet but\n * would be created successfully by `mkdir(dir, { recursive: true })` — i.e.\n * its nearest existing ancestor is a writable directory.\n *\n * Never mutates the filesystem: `isAvailable()` only needs to answer \"could\n * this work\", which must not leave a `~/.issue-flow/projects/<id>/` directory\n * behind for a project that ends up never using local issues (every other\n * source is queried on every resolution, so this runs far more often than the\n * provider is actually chosen).\n */\nasync function isWritableDirectory(dir: string): Promise<boolean> {\n  let current = dir;\n  for (;;) {\n    let stats: Awaited<ReturnType<typeof stat>>;\n    try {\n      stats = await stat(current);\n    } catch (err: unknown) {\n      if (!isNotFound(err)) return false;\n      const parent = dirname(current);\n      if (parent === current) return false; // reached the filesystem root\n      current = parent;\n      continue;\n    }\n    if (!stats.isDirectory()) return false;\n    try {\n      await access(current, constants.W_OK);\n      return true;\n    } catch {\n      return false;\n    }\n  }\n}\n\n/**\n * Identifiers become path segments, so anything that could escape the issues\n * directory is rejected before it reaches `join`.\n */\nfunction normalizeId(id: string): string {\n  const normalized = id.trim().replace(/^#/, '');\n  if (normalized.length === 0) {\n    throw new Error('Local issue identifier cannot be empty');\n  }\n  if (/[/\\\\]/.test(normalized) || normalized === '.' || normalized === '..') {\n    throw new Error(`Invalid local issue identifier: '${id}'`);\n  }\n  return normalized;\n}\n\nfunction toNumber(id: string): number | null {\n  return /^\\d+$/.test(id) ? Number.parseInt(id, 10) : null;\n}\n\n/**\n * Title lives in the leading H1, body is everything after it.\n *\n * Only the first non-empty line is considered: an H1 further down belongs to\n * the body (issue descriptions routinely use headings), so promoting it would\n * silently retitle the Issue.\n */\nexport function parseIssueMarkdown(content: string): { title: string; body: string } {\n  const lines = content.replace(/\\r\\n?/g, '\\n').split('\\n');\n  const headingIndex = lines.findIndex((line) => line.trim().length > 0);\n  const heading = headingIndex === -1 ? undefined : lines[headingIndex].match(/^#[ \\t]+(.*)$/);\n\n  if (!heading) {\n    return { title: '', body: lines.join('\\n').trim() };\n  }\n\n  return {\n    title: heading[1].trim(),\n    body: lines\n      .slice(headingIndex + 1)\n      .join('\\n')\n      .trim(),\n  };\n}\n\nfunction renderIssueMarkdown(title: string, body: string): string {\n  return `# ${title}\\n\\n${body.trim()}\\n`;\n}\n\n/**\n * Issue provider backed by plain files in the project's global storage\n * directory (`~/.issue-flow/projects/<project-id>/issues/<id>/`).\n *\n * Enables the whole pipeline without any network access: no gh, no remote, no\n * authentication. `issue.md` is the source of truth for the content and\n * `metadata.json` for everything else; the content hash is always recomputed\n * from the file so a hand-edited issue.md is never reported as unchanged.\n *\n * Every path goes through `resolveIssuePaths()`, exactly like the pipeline\n * commands, so an issue that still only exists under the legacy\n * `<projectRoot>/issues/` tree is migrated on first read instead of coming back\n * as \"not found\".\n */\nexport class LocalFileIssueProvider implements IssueProvider {\n  readonly name = 'local' as const;\n\n  private readonly configuredRoot?: string;\n  private cachedRoot?: string;\n\n  /**\n   * @param projectRoot Repository the issues belong to. It is no longer the\n   * literal parent of an `issues/` directory: it is the root the project id —\n   * and therefore the global storage directory — is derived from.\n   */\n  constructor(projectRoot?: string) {\n    this.configuredRoot = projectRoot;\n  }\n\n  /**\n   * True whenever the project's global storage directory already is — or\n   * could be — a writable directory. Never mutates the filesystem, never\n   * throws.\n   *\n   * A brand new project has no directory of its own until something writes, so\n   * \"does it already exist\" would report the provider as unavailable exactly\n   * when it is about to create the very first issue — `isWritableDirectory`\n   * walks up to the nearest existing ancestor instead of requiring the leaf to\n   * be there already.\n   */\n  async isAvailable(): Promise<boolean> {\n    try {\n      const { projectDir } = await resolveProjectPaths({ projectRoot: await this.root() });\n      return await isWritableDirectory(projectDir);\n    } catch {\n      return false;\n    }\n  }\n\n  async get(id: string): Promise<Issue | null> {\n    const issueId = normalizeId(id);\n    const markdownPath = await this.issueFile(issueId);\n\n    let raw: string;\n    try {\n      raw = await readFile(markdownPath, 'utf-8');\n    } catch (err: unknown) {\n      if (isNotFound(err)) return null;\n      throw err;\n    }\n\n    const { title: headingTitle, body } = parseIssueMarkdown(raw);\n    const metadata = await this.readMetadata(issueId);\n    const title = headingTitle || metadata?.title || '';\n\n    if (metadata) {\n      return {\n        id: metadata.id,\n        number: metadata.number,\n        title,\n        body,\n        labels: metadata.labels,\n        state: metadata.state,\n        source: 'local',\n        remoteRef: metadata.remote?.ref ?? null,\n        createdAt: metadata.createdAt,\n        updatedAt: metadata.updatedAt,\n        contentHash: hashIssueContent(title, body),\n        raw: metadata,\n      };\n    }\n\n    // metadata.json is optional: an issue.md dropped in by hand still works,\n    // with timestamps taken from the file itself.\n    const stats = await stat(markdownPath);\n    return {\n      id: issueId,\n      number: toNumber(issueId),\n      title,\n      body,\n      labels: [],\n      state: 'open',\n      source: 'local',\n      remoteRef: null,\n      createdAt: stats.birthtime.toISOString(),\n      updatedAt: stats.mtime.toISOString(),\n      contentHash: hashIssueContent(title, body),\n    };\n  }\n\n  async create(draft: IssueDraft): Promise<Issue> {\n    // An explicit id is how a mirror keeps the identifier of the Issue it\n    // mirrors: allocating a fresh one would make `issue-flow run <n>` see two\n    // unrelated Issues instead of one demand in two places.\n    const id = draft.id === undefined ? String(await this.allocateNumber()) : normalizeId(draft.id);\n    const paths = await this.paths(id);\n\n    await mkdir(paths.issueDir, { recursive: true });\n\n    // Exclusive create (the 'wx' flag, O_EXCL under the hood) instead of a\n    // check-then-write: two concurrent `create()` calls racing the same id\n    // would both pass a plain existence check before either writes, and the\n    // second would then silently overwrite the first through the atomic\n    // temp+rename writer. The OS now rejects the loser instead.\n    try {\n      await writeFile(paths.issueFile, renderIssueMarkdown(draft.title, draft.body), {\n        encoding: 'utf-8',\n        flag: 'wx',\n      });\n    } catch (err: unknown) {\n      if ((err as NodeJS.ErrnoException).code === 'EEXIST') {\n        throw new Error(\n          `Local issue '${id}' already exists at ${paths.issueFile}. ` +\n            'Remove it or pick another identifier before creating a new Issue.',\n        );\n      }\n      throw err;\n    }\n\n    const timestamp = isoNow();\n    const metadata: IssueMetadata = {\n      schemaVersion: 1,\n      id,\n      number: toNumber(id),\n      source: 'local',\n      title: draft.title,\n      labels: draft.labels,\n      state: 'open',\n      createdAt: timestamp,\n      updatedAt: timestamp,\n      contentHash: hashIssueContent(draft.title, draft.body),\n      ...(draft.remote ? { remote: draft.remote } : {}),\n    };\n\n    await this.writeMetadata(id, metadata);\n\n    return {\n      id,\n      number: metadata.number,\n      title: draft.title,\n      body: draft.body.trim(),\n      labels: draft.labels,\n      state: 'open',\n      source: 'local',\n      remoteRef: draft.remote?.ref ?? null,\n      createdAt: timestamp,\n      updatedAt: timestamp,\n      contentHash: metadata.contentHash,\n      raw: metadata,\n    };\n  }\n\n  async close(id: string): Promise<void> {\n    const issue = await this.get(id);\n    if (!issue) {\n      const issueDir = (await this.paths(normalizeId(id))).issueDir;\n      throw new Error(`Local issue '${normalizeId(id)}' not found at ${issueDir}`);\n    }\n\n    const issueId = normalizeId(id);\n    const existing = await this.readMetadata(issueId);\n\n    await this.writeMetadata(issueId, {\n      schemaVersion: 1,\n      id: issue.id,\n      number: issue.number,\n      source: existing?.source ?? 'local',\n      title: issue.title,\n      labels: issue.labels,\n      state: 'closed',\n      createdAt: issue.createdAt,\n      updatedAt: isoNow(),\n      contentHash: issue.contentHash,\n      ...(existing?.remote ? { remote: existing.remote } : {}),\n    });\n  }\n\n  /**\n   * Next free identifier: above every local number and, when GitHub answers,\n   * above every remote one too. Sharing a numbering space with the remote is\n   * what makes a naive `localMax + 1` collide the moment someone opens an Issue\n   * on GitHub.\n   */\n  async allocateNumber(): Promise<number> {\n    const [local, remote] = await Promise.all([this.highestLocalNumber(), highestRemoteNumber()]);\n    return Math.max(local, remote) + 1;\n  }\n\n  private async root(): Promise<string> {\n    if (this.configuredRoot !== undefined) return this.configuredRoot;\n    this.cachedRoot ??= await getProjectRoot();\n    return this.cachedRoot;\n  }\n\n  /**\n   * Every artifact of one issue, from the same resolver the pipeline commands\n   * use — which is also what triggers the migration of a legacy-only issue.\n   */\n  private async paths(id: string): Promise<IssuePaths> {\n    return resolveIssuePaths(id, { projectRoot: await this.root() });\n  }\n\n  private async issueFile(id: string): Promise<string> {\n    return (await this.paths(id)).issueFile;\n  }\n\n  private async metadataFile(id: string): Promise<string> {\n    return (await this.paths(id)).metadataFile;\n  }\n\n  /** Parsed metadata.json, or `null` when the file is absent. */\n  private async readMetadata(id: string): Promise<IssueMetadata | null> {\n    const path = await this.metadataFile(id);\n\n    let raw: string;\n    try {\n      raw = await readFile(path, 'utf-8');\n    } catch (err: unknown) {\n      if (isNotFound(err)) return null;\n      throw err;\n    }\n\n    let parsed: unknown;\n    try {\n      parsed = JSON.parse(raw);\n    } catch (err: unknown) {\n      throw new Error(`Invalid JSON in ${path}: ${(err as Error).message}`);\n    }\n\n    try {\n      return issueMetadataSchema.parse(parsed);\n    } catch (err: unknown) {\n      if (err instanceof ZodError) {\n        const details = err.issues\n          .map((issue) => `  - ${issue.path.join('.') || '(root)'}: ${issue.message}`)\n          .join('\\n');\n        throw new Error(`Invalid issue metadata at ${path}:\\n${details}`);\n      }\n      throw err;\n    }\n  }\n\n  private async writeMetadata(id: string, metadata: IssueMetadata): Promise<void> {\n    await writeFileAtomic(await this.metadataFile(id), `${JSON.stringify(metadata, null, 2)}\\n`);\n  }\n\n  /**\n   * Highest number across every `<issuesDir>/<id>/metadata.json` and numeric\n   * directory name.\n   *\n   * Resolving `issuesDir` also migrates the legacy tree when it is the only one\n   * that exists, which is what keeps an already-taken number from being handed\n   * out a second time after adopting the global storage.\n   */\n  private async highestLocalNumber(): Promise<number> {\n    const { issuesDir: dir } = await resolveProjectPaths({ projectRoot: await this.root() });\n\n    let entries: string[];\n    try {\n      entries = (await readdir(dir, { withFileTypes: true }))\n        .filter((entry) => entry.isDirectory())\n        .map((entry) => entry.name);\n    } catch (err: unknown) {\n      if (isNotFound(err)) return 0;\n      throw err;\n    }\n\n    const numbers = await Promise.all(\n      entries.map(async (name) => {\n        const fromName = toNumber(name) ?? 0;\n        // A directory whose metadata is unreadable still occupies its number.\n        const fromMetadata = await this.readMetadata(name)\n          .then((metadata) => metadata?.number ?? 0)\n          .catch(() => 0);\n        return Math.max(fromName, fromMetadata);\n      }),\n    );\n\n    return numbers.reduce((max, value) => Math.max(max, value), 0);\n  }\n}\n\n/** How many of the most-recently-created issues/PRs to inspect per probe. */\nconst REMOTE_PROBE_SAMPLE_SIZE = 20;\n\n/**\n * Highest number already taken on GitHub, or 0 when the remote is unreachable.\n *\n * Issues and pull requests share one counter, so both are probed: allocating\n * above the newest Issue alone would still collide with an open PR. Every\n * failure degrades to 0 — being offline must not block local creation.\n *\n * `gh ... list` defaults to sorting by creation date descending, which lines\n * up with number order in the overwhelming majority of repos — but that sort\n * is an implementation detail, not a contract. Rather than trust that the\n * single most-recent entry is also the highest-numbered one, a small sample\n * is fetched and the max is taken across it, which also tolerates the rare\n * case of a transferred issue whose creation date and number disagree.\n */\nasync function highestRemoteNumber(): Promise<number> {\n  const probes = [\n    ['issue', 'list'],\n    ['pr', 'list'],\n  ];\n\n  const results = await Promise.all(\n    probes.map(async (args) => {\n      try {\n        const result = await run(\n          'gh',\n          [\n            ...args,\n            '--state',\n            'all',\n            '--limit',\n            String(REMOTE_PROBE_SAMPLE_SIZE),\n            '--json',\n            'number',\n          ],\n          { timeout: REMOTE_PROBE_TIMEOUT_MS },\n        );\n        if (result.exitCode !== 0) return 0;\n\n        const parsed = JSON.parse(result.stdout);\n        if (!Array.isArray(parsed)) return 0;\n        return parsed.reduce((max: number, entry: unknown) => {\n          const n = (entry as { number?: unknown } | null)?.number;\n          return typeof n === 'number' ? Math.max(max, n) : max;\n        }, 0);\n      } catch {\n        return 0;\n      }\n    }),\n  );\n\n  return results.reduce((max, value) => Math.max(max, value), 0);\n}\n\n/** Shared instance resolving the project root lazily via git. */\nexport const localFileIssueProvider = new LocalFileIssueProvider();\n","import { githubIssueProvider } from './providers/github.js';\nimport { localFileIssueProvider } from './providers/local.js';\nimport { getRegisteredSources, registerProvider } from './registry.js';\n\n/**\n * Register the providers that ship with issue-flow.\n *\n * Idempotent and non-destructive: an origin that is already registered is left\n * untouched, so a test (or a future plugin) can install its own provider before\n * the first `resolveIssue` call without having it replaced by the built-in one.\n */\nexport function ensureProvidersRegistered(): void {\n  const registered = new Set(getRegisteredSources());\n\n  if (!registered.has('github')) {\n    registerProvider(githubIssueProvider);\n  }\n  if (!registered.has('local')) {\n    registerProvider(localFileIssueProvider);\n  }\n}\n","import { createInterface, type Interface as ReadlineInterface } from 'node:readline';\nimport { loadIssuesConfig } from '../config.js';\nimport { printInfo, printWarning } from '../ui/logger.js';\nimport { ensureProvidersRegistered } from './bootstrap.js';\nimport { getProvider, getRegisteredSources } from './registry.js';\nimport type { Issue, IssueSource, IssuesConfig, ResolvedIssue } from './types.js';\n\n/**\n * Failure to settle on an Issue. Carries the exit code the CLI should return,\n * so callers propagate it instead of inventing their own.\n */\nexport class IssueResolutionError extends Error {\n  readonly exitCode: number;\n\n  constructor(message: string, exitCode = 1) {\n    super(message);\n    this.name = 'IssueResolutionError';\n    this.exitCode = exitCode;\n  }\n}\n\nexport interface ResolveIssueOptions {\n  /** Already-resolved provider configuration. Defaults to loadIssuesConfig(). */\n  config?: IssuesConfig;\n  /** Origins to query. Defaults to every registered source. */\n  sources?: IssueSource[];\n  /**\n   * Whether a prompt may be shown. Defaults to a real TTY outside CI, which is\n   * what keeps `ask` from ever blocking a headless run.\n   */\n  interactive?: boolean;\n  /** Input stream for the conflict prompt. Defaults to process.stdin. */\n  stdin?: NodeJS.ReadableStream;\n  /** Output stream for the conflict prompt. Defaults to process.stdout. */\n  stdout?: NodeJS.WritableStream;\n  /** Informational sink. Defaults to printInfo. */\n  info?: (message: string) => void;\n  /** Warning sink. Defaults to printWarning. */\n  warn?: (message: string) => void;\n}\n\n/** How many invalid answers are tolerated before the prompt gives up. */\nconst MAX_PROMPT_ATTEMPTS = 3;\n\n/**\n * Labels shown to users for the built-in origins. An origin registered from\n * outside this package is displayed under its own name, so a new provider needs\n * no entry here.\n */\nconst SOURCE_LABELS: Record<string, string> = {\n  github: 'GitHub',\n  local: 'local',\n};\n\nfunction sourceLabel(source: IssueSource): string {\n  return SOURCE_LABELS[source] ?? source;\n}\n\n/** Same label, capitalized for the numbered prompt ('local' -> 'Local'). */\nfunction promptLabel(source: IssueSource): string {\n  const label = sourceLabel(source);\n  return label.charAt(0).toUpperCase() + label.slice(1);\n}\n\ninterface Candidate {\n  source: IssueSource;\n  issue: Issue | null;\n  /** Why the origin produced nothing, used only to explain a total miss. */\n  reason: string | null;\n}\n\n/** A candidate that actually produced an Issue. */\ninterface FoundCandidate extends Candidate {\n  issue: Issue;\n}\n\nfunction errorMessage(err: unknown): string {\n  return err instanceof Error ? err.message : String(err);\n}\n\n/**\n * Read one origin without letting it break the others.\n *\n * An unavailable provider or a failed read degrades to \"no candidate\" plus a\n * reason: as long as another origin has the Issue the pipeline keeps going, and\n * when nothing is found the reasons are surfaced in the final error so a broken\n * environment is never reported as a missing Issue.\n */\nasync function fetchCandidate(\n  source: IssueSource,\n  id: string,\n  warn: (message: string) => void,\n): Promise<Candidate> {\n  let provider: ReturnType<typeof getProvider>;\n  try {\n    provider = getProvider(source);\n  } catch (err) {\n    return { source, issue: null, reason: errorMessage(err) };\n  }\n\n  let available: boolean;\n  try {\n    available = await provider.isAvailable();\n  } catch (err) {\n    return { source, issue: null, reason: `provider unavailable (${errorMessage(err)})` };\n  }\n  if (!available) {\n    return { source, issue: null, reason: 'provider unavailable' };\n  }\n\n  try {\n    const issue = await provider.get(id);\n    return { source, issue, reason: issue === null ? 'not found' : null };\n  } catch (err) {\n    const reason = errorMessage(err);\n    // A real failure (network, auth, corrupted metadata) must be visible even\n    // when the other origin answers.\n    warn(`Could not read issue '${id}' from ${sourceLabel(source)}: ${reason}`);\n    return { source, issue: null, reason };\n  }\n}\n\nfunction shortHash(hash: string): string {\n  const hex = hash.startsWith('sha256:') ? hash.slice('sha256:'.length) : hash;\n  return hex.slice(0, 12);\n}\n\n/** One line per origin describing what differs, without dumping every body. */\nfunction describeCandidate(source: IssueSource, issue: Issue): string {\n  const lines = issue.body.length === 0 ? 0 : issue.body.split('\\n').length;\n  return (\n    `  ${sourceLabel(source).padEnd(6)} title: \"${issue.title}\" | body: ${lines} line(s), ` +\n    `${issue.body.length} char(s) | updated: ${issue.updatedAt} | hash: ${shortHash(issue.contentHash)}`\n  );\n}\n\n/** 'local and GitHub', 'local, GitHub and memory' — origins in query order. */\nfunction listSources(candidates: FoundCandidate[]): string {\n  const labels = candidates.map((candidate) => sourceLabel(candidate.source));\n  if (labels.length <= 1) {\n    return labels.join('');\n  }\n  return `${labels.slice(0, -1).join(', ')} and ${labels[labels.length - 1]}`;\n}\n\n/**\n * Turn a readline interface into an awaitable line reader.\n *\n * Lines are queued instead of read on demand: `rl.question` drops whatever\n * arrives between two questions, which silently loses a piped answer typed\n * ahead of the prompt. Resolves `null` once the input is exhausted, so EOF ends\n * the prompt instead of hanging the process.\n */\nfunction createLineReader(\n  rl: ReadlineInterface,\n  output: NodeJS.WritableStream,\n): (query: string) => Promise<string | null> {\n  const queued: string[] = [];\n  let pending: ((line: string | null) => void) | null = null;\n  let closed = false;\n\n  rl.on('line', (line: string) => {\n    if (pending !== null) {\n      const resolve = pending;\n      pending = null;\n      resolve(line);\n      return;\n    }\n    queued.push(line);\n  });\n  rl.on('close', () => {\n    closed = true;\n    if (pending !== null) {\n      const resolve = pending;\n      pending = null;\n      resolve(null);\n    }\n  });\n\n  return (query: string) =>\n    new Promise<string | null>((resolve) => {\n      const buffered = queued.shift();\n      if (buffered !== undefined) {\n        resolve(buffered);\n        return;\n      }\n      if (closed) {\n        resolve(null);\n        return;\n      }\n      output.write(query);\n      pending = resolve;\n    });\n}\n\n/**\n * Interactive choice between the divergent versions.\n *\n * The options are numbered from the origins that actually answered, so a third\n * provider simply shows up as `[3] Memory` without this function knowing which\n * origins exist. Cancel is always the last option.\n */\nasync function promptChoice(\n  sources: IssueSource[],\n  stdin: NodeJS.ReadableStream,\n  stdout: NodeJS.WritableStream,\n  warn: (message: string) => void,\n): Promise<IssueSource | 'cancel'> {\n  const options = sources.map((source, index) => `[${index + 1}] ${promptLabel(source)}`);\n  const cancelOption = sources.length + 1;\n  const query = `Which version should be used? ${options.join('  ')}  [${cancelOption}] Cancel: `;\n  const numbers = Array.from({ length: cancelOption }, (_, index) => String(index + 1));\n  const accepted = `${numbers.slice(0, -1).join(', ')} or ${numbers[numbers.length - 1]}`;\n\n  const rl = createInterface({ input: stdin, output: stdout });\n  const ask = createLineReader(rl, stdout);\n  try {\n    for (let attempt = 0; attempt < MAX_PROMPT_ATTEMPTS; attempt++) {\n      const answer = await ask(query);\n      if (answer === null) {\n        return 'cancel';\n      }\n      const choice = answer.trim();\n      const picked = sources[Number(choice) - 1];\n      if (choice.length > 0 && picked !== undefined) {\n        return picked;\n      }\n      if (choice === String(cancelOption)) {\n        return 'cancel';\n      }\n      warn(`Invalid choice: '${choice}'. Enter ${accepted}.`);\n    }\n    return 'cancel';\n  } finally {\n    rl.close();\n  }\n}\n\nfunction isInteractiveByDefault(): boolean {\n  const ci = process.env.CI;\n  const inCi = ci !== undefined && ci !== '' && ci !== '0' && ci.toLowerCase() !== 'false';\n  return Boolean(process.stdin.isTTY) && !inCi;\n}\n\nfunction buildResolved(\n  issue: Issue,\n  source: IssueSource,\n  local: Issue | null,\n  github: Issue | null,\n  divergent: boolean,\n): ResolvedIssue {\n  return { issue, source, local, github, divergent };\n}\n\n/** Origin `conflictPolicy` points at, or `null` for 'ask'. */\nfunction policyTarget(policy: IssuesConfig['conflictPolicy']): IssueSource | null {\n  if (policy === 'prefer-local') {\n    return 'local';\n  }\n  if (policy === 'prefer-github') {\n    return 'github';\n  }\n  return null;\n}\n\n/**\n * Single entry point every command uses to decide which Issue the pipeline\n * works on.\n *\n * The logic is written against the origins that answered, never against a fixed\n * list of sources: registering a new provider is enough for it to take part in\n * the resolution, be reported in a divergence and appear in the prompt.\n *\n * Scenarios:\n * - only one origin has it -> that one, no questions asked;\n * - several, same contentHash -> equivalence is reported and the preferred\n *   origin wins, without a prompt;\n * - several, different content -> the divergence is reported and\n *   `conflictPolicy` decides (`ask` prompts on a TTY, falls back to\n *   `preferredProvider` with a warning anywhere else);\n * - none -> IssueResolutionError, which carries the CLI exit code.\n */\nexport async function resolveIssue(\n  id: string,\n  opts: ResolveIssueOptions = {},\n): Promise<ResolvedIssue> {\n  const info = opts.info ?? printInfo;\n  const warn = opts.warn ?? printWarning;\n  const config = opts.config ?? (await loadIssuesConfig({ warn }));\n\n  ensureProvidersRegistered();\n  const sources = opts.sources ?? getRegisteredSources();\n\n  // Each origin is an independent I/O call (network for GitHub, disk for\n  // local); querying them concurrently instead of one-by-one keeps the total\n  // latency at the slowest origin instead of the sum of all of them, without\n  // changing which candidate wins (order is preserved by Promise.all).\n  const candidates: Candidate[] = await Promise.all(\n    sources.map((source) => fetchCandidate(source, id, warn)),\n  );\n\n  const issueOf = (source: IssueSource): Issue | null =>\n    candidates.find((candidate) => candidate.source === source)?.issue ?? null;\n  const local = issueOf('local');\n  const github = issueOf('github');\n\n  const found = candidates.filter(\n    (candidate): candidate is FoundCandidate => candidate.issue !== null,\n  );\n\n  if (found.length === 0) {\n    const details = candidates\n      .map((candidate) => `${sourceLabel(candidate.source)}: ${candidate.reason ?? 'not found'}`)\n      .join('; ');\n    const where = details.length > 0 ? ` (${details})` : '';\n    throw new IssueResolutionError(`Issue '${id}' not found in any registered origin${where}`);\n  }\n\n  const build = (candidate: FoundCandidate, divergent: boolean): ResolvedIssue =>\n    buildResolved(candidate.issue, candidate.source, local, github, divergent);\n\n  const firstFound = found[0] as FoundCandidate;\n  if (found.length === 1) {\n    return build(firstFound, false);\n  }\n\n  // Several origins have it. The preferred one wins whenever it is among them;\n  // otherwise the first origin queried does, so an unrelated preference never\n  // leaves the pipeline without an Issue.\n  const preferred =\n    found.find((candidate) => candidate.source === config.preferredProvider) ?? firstFound;\n\n  const distinct = new Set(found.map((candidate) => candidate.issue.contentHash));\n  if (distinct.size === 1) {\n    info(\n      `Issue '${id}' has identical content in ${listSources(found)}; using ${sourceLabel(preferred.source)}.`,\n    );\n    return build(preferred, false);\n  }\n\n  info(`Issue '${id}' differs between origins:`);\n  for (const candidate of found) {\n    info(describeCandidate(candidate.source, candidate.issue));\n  }\n\n  const target = policyTarget(config.conflictPolicy);\n  if (target !== null) {\n    const chosen = found.find((candidate) => candidate.source === target);\n    if (chosen !== undefined) {\n      info(`Conflict policy '${config.conflictPolicy}': using the ${sourceLabel(target)} version.`);\n      return build(chosen, true);\n    }\n    // The policy names an origin that has no version of this Issue: say so\n    // instead of silently picking for the user under its name.\n    warn(\n      `Conflict policy '${config.conflictPolicy}' does not apply to Issue '${id}' ` +\n        `(${sourceLabel(target)} has no version of it); using ${sourceLabel(preferred.source)}.`,\n    );\n    return build(preferred, true);\n  }\n\n  const interactive = opts.interactive ?? isInteractiveByDefault();\n  if (!interactive) {\n    warn(\n      `Divergent Issue '${id}' and conflict policy 'ask' in a non-interactive environment; ` +\n        `using the preferred provider (${sourceLabel(preferred.source)}).`,\n    );\n    return build(preferred, true);\n  }\n\n  const choice = await promptChoice(\n    found.map((candidate) => candidate.source),\n    opts.stdin ?? process.stdin,\n    opts.stdout ?? process.stdout,\n    warn,\n  );\n  if (choice === 'cancel') {\n    throw new IssueResolutionError(\n      `Cancelled: Issue '${id}' diverges between ${listSources(found)}.`,\n    );\n  }\n  const picked = found.find((candidate) => candidate.source === choice) as FoundCandidate;\n  return build(picked, true);\n}\n","import { printError } from '../ui/logger.js';\nimport { IssueResolutionError, type ResolveIssueOptions, resolveIssue } from './resolver.js';\nimport type { Issue, ResolvedIssue } from './types.js';\n\n/**\n * Bridge between the resolved Issue and the phase prompts.\n *\n * Commands never fetch the Issue themselves: they resolve it once through\n * `resolveIssue` and hand the content to the template, so every phase sees the\n * exact same title/body regardless of where the demand came from.\n */\n\n/** Path of the markdown file a local Issue lives in. */\nexport function localIssueRef(id: string): string {\n  return `issues/${id}/issue.md`;\n}\n\n/**\n * Reference a human (or an agent) can follow to read the Issue: the remote URL\n * when there is one, the local file otherwise.\n */\nexport function issueReference(issue: Issue): string {\n  return issue.remoteRef ?? localIssueRef(issue.id);\n}\n\n/** Shown instead of an empty list so the prompt never renders a dangling label. */\nconst NO_LABELS = '(none)';\n\n/**\n * Placeholder values every phase template consumes, replacing the former\n * `gh issue view` instruction.\n */\nexport function issuePlaceholders(resolved: ResolvedIssue): Record<string, string> {\n  const { issue } = resolved;\n  return {\n    __ISSUE_TITLE__: issue.title,\n    __ISSUE_BODY__: issue.body,\n    __ISSUE_LABELS__: issue.labels.length > 0 ? issue.labels.join(', ') : NO_LABELS,\n    __ISSUE_SOURCE__: resolved.source,\n    __ISSUE_URL__: issueReference(issue),\n  };\n}\n\nexport type CommandIssue = { ok: true; resolved: ResolvedIssue } | { ok: false; code: number };\n\n/**\n * Resolve the Issue a command works on, turning a resolution failure into the\n * exit code the command returns.\n *\n * `preResolved` short-circuits the lookup: the pipeline decides the origin once\n * and passes the decision down, so a phase never re-queries the providers (and\n * never asks the user twice about the same divergence).\n *\n * `options` forwards resolver options — `run.ts` passes the configuration it\n * already loaded so `.issue-flow.json` is read (and warned about) only once.\n */\nexport async function resolveCommandIssue(\n  id: string,\n  preResolved?: ResolvedIssue,\n  options?: ResolveIssueOptions,\n): Promise<CommandIssue> {\n  if (preResolved !== undefined) {\n    return { ok: true, resolved: preResolved };\n  }\n\n  try {\n    return { ok: true, resolved: await resolveIssue(id, options) };\n  } catch (err) {\n    if (err instanceof IssueResolutionError) {\n      printError(err.message);\n      return { ok: false, code: err.exitCode };\n    }\n    const message = err instanceof Error ? err.message : String(err);\n    printError(`Could not resolve issue '${id}': ${message}`);\n    return { ok: false, code: 1 };\n  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package/dist/{chunk-YGEWIEAI.js → chunk-EBJM6G2D.js}

@@ -6,20 +6,28 @@ import {
 } from "./chunk-HDV3YDTG.js";
 import {
   publishGitState
-} from "./chunk-WHIBTNYI.js";
+} from "./chunk-YPIIIDTT.js";
 import {
+  EXECUTE_PHASE,
   applyPlaceholders,
-  loadPrompt
-} from "./chunk-SLHZPB3C.js";
+  elapsedSecondsSince,
+  getPhaseUsageTotals,
+  loadPrompt,
+  publishIterationMetrics,
+  publishStoryMetrics
+} from "./chunk-7HX2RPFY.js";
 import {
   createConfig,
   resolvePaths,
   validateDependencies
-} from "./chunk-2AVZZAC6.js";
+} from "./chunk-OCXHO7YP.js";
 import {
   allStoriesPass,
+  applyStoryMetrics,
   clearLastError,
+  divideUsage,
   formatDuration,
+  formatTokens,
   getIcons,
   getOutputCallback,
   getSessionPublisher,
@@ -32,6 +40,7 @@ import {
   loadTaskPlan,
   markIssueCompleted,
   markIssueInProgress,
+  parseUsage,
   printError,
   printInfo,
   printRetry,
@@ -42,7 +51,7 @@ import {
   trimErrorMessage,
   useColor,
   useUnicode
-} from "./chunk-JNEHVQH5.js";
+} from "./chunk-6HGZYTAT.js";
 
 // src/core/engine.ts
 import { existsSync } from "fs";
@@ -176,7 +185,7 @@ function printStartupHeader(config, plan) {
     `Retries:     ${retryLabel}`
   ]);
 }
-function printSummaryBox(status, iterations, totalRetries, elapsedSeconds, plan, extraInfo) {
+function printSummaryBox(status, iterations, totalRetries, elapsedSeconds, plan, extraInfo, usage) {
   const icons = getIcons();
   const storiesTotal = plan.userStories.length;
   const storiesPassing = plan.userStories.filter((s) => s.passes).length;
@@ -203,9 +212,13 @@ function printSummaryBox(status, iterations, totalRetries, elapsedSeconds, plan,
     `Status:      ${statusIcon} ${statusLabel}`,
     `Stories:     ${storiesPassing}/${storiesTotal} passing`,
     `Iterations:  ${iterations}`,
-    `Duration:    ${duration}`,
-    `Retries:     ${totalRetries}`
+    `Duration:    ${duration}`
   ];
+  const tokens = formatTokens(usage);
+  if (tokens !== "") {
+    boxLines.push(`Tokens:      ${tokens}`);
+  }
+  boxLines.push(`Retries:     ${totalRetries}`);
   if (extraInfo) {
     boxLines.push("---");
     boxLines.push(extraInfo);
@@ -219,6 +232,10 @@ function buildRunSummaryLines(info) {
     `  Stories:  ${info.storyCount}`,
     `  Duration: ${formatDuration(info.elapsedSeconds)}`
   ];
+  const tokens = formatTokens(info.usage);
+  if (tokens !== "") {
+    lines.push(`  Tokens:   ${tokens}`);
+  }
   if (!info.noBranch) {
     lines.push(`  PR:       ${info.prUrl}`);
   }
@@ -249,17 +266,32 @@ function printRunSummary(info) {
 // src/core/executor.ts
 import { execa } from "execa";
 async function executeClaude(prompt) {
-  const result = await execa("claude", ["--dangerously-skip-permissions", "--print"], {
-    input: prompt,
-    reject: false,
-    timeout: 0,
-    // No timeout — let the engine handle iteration limits
-    stripFinalNewline: false
-  });
+  const result = await execa(
+    "claude",
+    ["--dangerously-skip-permissions", "--print", "--output-format", "json"],
+    {
+      input: prompt,
+      reject: false,
+      timeout: 0,
+      // No timeout — let the engine handle iteration limits
+      stripFinalNewline: false
+    }
+  );
   const stdout = result.stdout?.toString() ?? "";
   const stderr = result.stderr?.toString() ?? "";
-  const output = stdout + (stderr ? `
+  const exitCode = result.exitCode ?? 1;
+  let output = stdout + (stderr ? `
 ${stderr}` : "");
+  let cost = null;
+  if (exitCode === 0) {
+    try {
+      const parsed = JSON.parse(stdout);
+      const text = parsed?.result;
+      output = typeof text === "string" ? text : stdout;
+      cost = parseUsage(parsed);
+    } catch {
+    }
+  }
   const onOutput = getOutputCallback();
   if (onOutput) {
     const trimmed = output.trim();
@@ -268,8 +300,9 @@ ${stderr}` : "");
     }
   }
   return {
-    exitCode: result.exitCode ?? 1,
-    output
+    exitCode,
+    output,
+    cost
   };
 }
 
@@ -284,6 +317,10 @@ function emitLog(message) {
     console.log(message);
   }
 }
+function newlyCompletedStoryIds(before, after) {
+  const wasPassing = new Map(before.map((story) => [story.id, story.passes]));
+  return after.filter((story) => story.passes && wasPassing.get(story.id) === false).map((story) => story.id);
+}
 async function ensureProgressFile(progressFile) {
   if (!existsSync(progressFile)) {
     const content = `# Issue Flow Progress Log
@@ -384,6 +421,7 @@ async function runEngine(config, paths) {
     i++;
     getSessionPublisher().publish({ type: "iteration:start", at: isoNow(), iteration: i });
     plan = await loadTaskPlan(paths.prdFile);
+    const storiesBeforeIteration = plan.userStories;
     if (isVerbose()) {
       printIterationHeader(i, config.maxIterations, plan.userStories);
     }
@@ -394,8 +432,11 @@ async function runEngine(config, paths) {
     const iterationStartedAt = isoNow();
     plan = markIssueInProgress(plan, iterationStartedAt);
     await saveTaskPlan(paths.prdFile, plan);
+    const iterationStartedAtMs = Date.now();
     const result = await executeClaude(prompt);
+    const iterationSeconds = elapsedSecondsSince(iterationStartedAtMs);
     if (result.exitCode !== 0) {
+      publishIterationMetrics(i, result.cost, iterationSeconds);
       const errorMessage = trimErrorMessage(result.output);
       if (isTransientFailure(result.exitCode, result.output)) {
         retryCount++;
@@ -412,7 +453,8 @@ async function runEngine(config, paths) {
             totalRetryCount,
             elapsed3,
             plan,
-            `Exceeded retry limit (${config.retryLimit}) on transient errors`
+            `Exceeded retry limit (${config.retryLimit}) on transient errors`,
+            getPhaseUsageTotals(EXECUTE_PHASE)
           );
           return result.exitCode;
         }
@@ -448,7 +490,8 @@ async function runEngine(config, paths) {
         totalRetryCount,
         elapsed2,
         plan,
-        `Claude CLI failed with exit code ${result.exitCode}`
+        `Claude CLI failed with exit code ${result.exitCode}`,
+        getPhaseUsageTotals(EXECUTE_PHASE)
       );
       return result.exitCode;
     }
@@ -465,7 +508,22 @@ async function runEngine(config, paths) {
       at: isoNow(),
       stories: plan.userStories
     });
+    const completedStoryIds = newlyCompletedStoryIds(storiesBeforeIteration, plan.userStories);
+    if (completedStoryIds.length > 0) {
+      const storyShare = divideUsage(result.cost, completedStoryIds.length);
+      const storySeconds = Math.round(iterationSeconds / completedStoryIds.length);
+      for (const storyId of completedStoryIds) {
+        publishStoryMetrics(storyId, storyShare, storySeconds);
+      }
+      const planWithMetrics = applyStoryMetrics(plan, completedStoryIds, storyShare, storySeconds);
+      try {
+        await saveTaskPlan(paths.prdFile, planWithMetrics);
+        plan = planWithMetrics;
+      } catch {
+      }
+    }
     getSessionPublisher().publish({ type: "iteration:end", at: isoNow(), iteration: i });
+    publishIterationMetrics(i, result.cost, iterationSeconds);
     await publishGitState(getSessionPublisher());
     if (result.output.includes("<promise>COMPLETE</promise>")) {
       plan = await loadTaskPlan(paths.prdFile);
@@ -473,7 +531,15 @@ async function runEngine(config, paths) {
         plan = markIssueCompleted(plan);
         await saveTaskPlan(paths.prdFile, plan);
         const elapsed2 = Math.floor((Date.now() - startTime) / 1e3);
-        printSummaryBox("success", i, totalRetryCount, elapsed2, plan);
+        printSummaryBox(
+          "success",
+          i,
+          totalRetryCount,
+          elapsed2,
+          plan,
+          void 0,
+          getPhaseUsageTotals(EXECUTE_PHASE)
+        );
         return 0;
       }
       plan = setLastError(
@@ -500,7 +566,8 @@ async function runEngine(config, paths) {
     totalRetryCount,
     elapsed,
     plan,
-    "Reached max iterations without completing all tasks."
+    "Reached max iterations without completing all tasks.",
+    getPhaseUsageTotals(EXECUTE_PHASE)
   );
   return 1;
 }
@@ -541,4 +608,4 @@ export {
   printRunSummary,
   runExecute
 };
-//# sourceMappingURL=chunk-YGEWIEAI.js.map
+//# sourceMappingURL=chunk-EBJM6G2D.js.map

package/dist/chunk-EBJM6G2D.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/engine.ts","../src/ui/progress.ts","../src/ui/summary.ts","../src/core/executor.ts","../src/commands/execute.ts"],"sourcesContent":["import { existsSync } from 'node:fs';\nimport { cp, mkdir, readFile, writeFile } from 'node:fs/promises';\nimport { join } from 'node:path';\nimport type { EngineConfig, ResolvedPaths, TaskPlan, UserStory } from '../types.js';\nimport { printError, printInfo, printRetry, printSuccess, printWarning } from '../ui/logger.js';\nimport { printIterationHeader } from '../ui/progress.js';\nimport { printStartupHeader, printSummaryBox } from '../ui/summary.js';\nimport { isTransientFailure, retryDelaySeconds, sleep } from '../utils/retry.js';\nimport { executeClaude } from './executor.js';\nimport { divideUsage } from './metrics.js';\nimport { applyPlaceholders, loadPrompt } from './prompt-resolver.js';\nimport { publishGitState } from './session-git.js';\nimport {\n  EXECUTE_PHASE,\n  elapsedSecondsSince,\n  getPhaseUsageTotals,\n  publishIterationMetrics,\n  publishStoryMetrics,\n} from './session-metrics.js';\nimport { getSessionPublisher } from './session-publisher.js';\nimport {\n  allStoriesPass,\n  applyStoryMetrics,\n  clearLastError,\n  hasPendingCorrection,\n  initializeState,\n  isoNow,\n  loadTaskPlan,\n  markIssueCompleted,\n  markIssueInProgress,\n  saveTaskPlan,\n  setLastError,\n  trimErrorMessage,\n} from './state-manager.js';\nimport { getOutputCallback, getStoryUpdateCallback, isVerbose } from './verbose.js';\n\n/**\n * Emit a message through the output callback if available, otherwise console.log.\n * Used for bare console.log calls in engine functions so they route through listr2.\n */\nfunction emitLog(message: string): void {\n  const cb = getOutputCallback();\n  if (cb) {\n    // Skip empty lines in listr2 context — they don't render meaningfully\n    if (message) {\n      cb(message);\n    }\n  } else {\n    console.log(message);\n  }\n}\n\n/**\n * Ids of the stories that flipped from `passes: false` to `passes: true`\n * between the two readings of the plan taken around one execute iteration.\n *\n * Stories already passing before the iteration, and stories that only exist in\n * the newer plan, are never attributed: nothing says this iteration paid for\n * them.\n */\nfunction newlyCompletedStoryIds(before: UserStory[], after: UserStory[]): string[] {\n  const wasPassing = new Map(before.map((story) => [story.id, story.passes]));\n  return after\n    .filter((story) => story.passes && wasPassing.get(story.id) === false)\n    .map((story) => story.id);\n}\n\n/**\n * Initialize the progress file if it doesn't exist.\n */\nasync function ensureProgressFile(progressFile: string): Promise<void> {\n  if (!existsSync(progressFile)) {\n    const content = `# Issue Flow Progress Log\\nStarted: ${new Date().toString()}\\n---\\n`;\n    await writeFile(progressFile, content, 'utf-8');\n  }\n}\n\n/**\n * Archive previous run artifacts if the branch has changed.\n */\nasync function archiveIfBranchChanged(plan: TaskPlan, paths: ResolvedPaths): Promise<void> {\n  const { lastBranchFile, archiveDir, prdFile, progressFile } = paths;\n\n  if (!existsSync(lastBranchFile)) {\n    return;\n  }\n\n  const currentBranch = plan.branchName ?? '';\n  let lastBranch = '';\n\n  try {\n    lastBranch = (await readFile(lastBranchFile, 'utf-8')).trim();\n  } catch {\n    return;\n  }\n\n  if (currentBranch && lastBranch && currentBranch !== lastBranch) {\n    const dateStr = new Date().toISOString().split('T')[0];\n    const folderName = lastBranch.replace(/^issue\\//, '').replace(/[<>:\"|?*\\\\]/g, '_');\n    const archiveFolder = join(archiveDir, `${dateStr}-${folderName}`);\n\n    printInfo(`Archiving previous run: ${lastBranch}`);\n    await mkdir(archiveFolder, { recursive: true });\n\n    if (existsSync(prdFile)) {\n      await cp(prdFile, join(archiveFolder, 'tasks.json'));\n    }\n    if (existsSync(progressFile)) {\n      await cp(progressFile, join(archiveFolder, 'progress.txt'));\n    }\n\n    printInfo(`   Archived to: ${archiveFolder}`);\n\n    // Reset progress file for new run\n    await writeFile(\n      progressFile,\n      `# Issue Flow Progress Log\\nStarted: ${new Date().toString()}\\n---\\n`,\n      'utf-8',\n    );\n  }\n}\n\n/**\n * Write the current branch to the last-branch tracking file.\n */\nasync function trackBranch(plan: TaskPlan, lastBranchFile: string): Promise<void> {\n  const branch = plan.branchName ?? '';\n  if (branch) {\n    await writeFile(lastBranchFile, `${branch}\\n`, 'utf-8');\n  }\n}\n\n/**\n * Run the issue-flow engine loop.\n *\n * This replicates the full execution flow:\n * 1. Load and initialize task plan state\n * 2. Check for early exit (already complete)\n * 3. Archive previous run if branch changed\n * 4. Resolve prompt\n * 5. Main loop: iterate, execute Claude, handle results\n * 6. Print summary\n */\nexport async function runEngine(config: EngineConfig, paths: ResolvedPaths): Promise<number> {\n  // Load task plan\n  if (!existsSync(paths.prdFile)) {\n    printError(`PRD file not found at ${paths.prdFile}`);\n    if (config.issueNumber) {\n      emitLog(`Have you run the resolve-issue skill for issue #${config.issueNumber} first?`);\n    }\n    return 1;\n  }\n\n  let plan = await loadTaskPlan(paths.prdFile);\n  plan = initializeState(plan);\n  await saveTaskPlan(paths.prdFile, plan);\n\n  // Check if already completed. A pending correction (a failed review whose\n  // findings haven't been addressed yet) always overrides this, even though\n  // every userStories[].passes is already true — otherwise a correction\n  // cycle's re-run of execute would exit here without ever looking at what\n  // the review found.\n  if (plan.issueStatus === 'completed' && allStoriesPass(plan) && !hasPendingCorrection(plan)) {\n    emitLog(`Issue already marked complete in ${paths.prdFile}`);\n    return 0;\n  }\n\n  // Warn if marked complete but stories still pending\n  if (plan.issueStatus === 'completed' && !allStoriesPass(plan)) {\n    printWarning(\n      'Issue marked completed but some stories are still pending. Resetting to in_progress.',\n    );\n    plan = markIssueInProgress(plan);\n    plan = setLastError(\n      plan,\n      'invalid_completion_state',\n      'tasks.json claimed the issue was completed before every story had passes=true.',\n    );\n    await saveTaskPlan(paths.prdFile, plan);\n  }\n\n  // Check if all stories already pass\n  if (allStoriesPass(plan) && !hasPendingCorrection(plan)) {\n    emitLog('All user stories already pass. Marking issue as completed.');\n    plan = markIssueCompleted(plan);\n    await saveTaskPlan(paths.prdFile, plan);\n    return 0;\n  }\n\n  // Archive previous run if branch changed\n  await archiveIfBranchChanged(plan, paths);\n\n  // Track current branch\n  await trackBranch(plan, paths.lastBranchFile);\n\n  // Initialize progress file\n  await ensureProgressFile(paths.progressFile);\n\n  // Load prompt template\n  const promptTemplate = await loadPrompt('execute');\n\n  // Print startup header\n  printStartupHeader(config, plan);\n\n  const startTime = Date.now();\n  let i = 0;\n  let retryCount = 0;\n  let totalRetryCount = 0;\n\n  // Main loop\n  while (true) {\n    // Check iteration limit\n    if (config.maxIterations !== undefined && i >= config.maxIterations) {\n      break;\n    }\n\n    i++;\n    getSessionPublisher().publish({ type: 'iteration:start', at: isoNow(), iteration: i });\n\n    // Re-read plan to get latest state\n    plan = await loadTaskPlan(paths.prdFile);\n    // Baseline for story attribution: whatever was still pending before the\n    // agent ran is what this iteration can claim credit for.\n    const storiesBeforeIteration = plan.userStories;\n\n    if (isVerbose()) {\n      printIterationHeader(i, config.maxIterations, plan.userStories);\n    }\n\n    // Apply placeholders to prompt\n    const prompt = applyPlaceholders(promptTemplate, {\n      __PRD_FILE__: paths.prdFile,\n      __PROGRESS_FILE__: paths.progressFile,\n    });\n\n    const iterationStartedAt = isoNow();\n    plan = markIssueInProgress(plan, iterationStartedAt);\n    await saveTaskPlan(paths.prdFile, plan);\n\n    // Execute Claude\n    const iterationStartedAtMs = Date.now();\n    const result = await executeClaude(prompt);\n    const iterationSeconds = elapsedSecondsSince(iterationStartedAtMs);\n\n    if (result.exitCode !== 0) {\n      // A failed iteration still burned tokens: report them on the execute\n      // phase, with no attribution to any story.\n      publishIterationMetrics(i, result.cost, iterationSeconds);\n\n      const errorMessage = trimErrorMessage(result.output);\n\n      if (isTransientFailure(result.exitCode, result.output)) {\n        retryCount++;\n        totalRetryCount++;\n        plan = await loadTaskPlan(paths.prdFile);\n        plan = setLastError(plan, 'transient_claude_failure', errorMessage);\n        await saveTaskPlan(paths.prdFile, plan);\n\n        if (!config.retryForever && retryCount > config.retryLimit) {\n          const elapsed = Math.floor((Date.now() - startTime) / 1000);\n          plan = await loadTaskPlan(paths.prdFile);\n          printSummaryBox(\n            'failed',\n            i,\n            totalRetryCount,\n            elapsed,\n            plan,\n            `Exceeded retry limit (${config.retryLimit}) on transient errors`,\n            getPhaseUsageTotals(EXECUTE_PHASE),\n          );\n          return result.exitCode;\n        }\n\n        const delaySeconds = retryDelaySeconds(\n          retryCount,\n          config.backoffBaseSeconds,\n          config.backoffMaxSeconds,\n        );\n        getSessionPublisher().publish({\n          type: 'retry',\n          at: isoNow(),\n          attempt: retryCount,\n          delaySeconds,\n          reason: 'transient_claude_failure',\n        });\n\n        if (isVerbose()) {\n          emitLog('');\n        }\n        printRetry(\n          `Transient Claude failure on iteration ${i} (attempt ${retryCount}). Retrying in ${delaySeconds}s.`,\n        );\n\n        // Stay within current iteration budget\n        i--;\n        await sleep(delaySeconds);\n        continue;\n      }\n\n      // Fatal failure\n      plan = await loadTaskPlan(paths.prdFile);\n      plan = setLastError(plan, 'fatal_claude_failure', errorMessage);\n      await saveTaskPlan(paths.prdFile, plan);\n\n      const elapsed = Math.floor((Date.now() - startTime) / 1000);\n      printSummaryBox(\n        'failed',\n        i,\n        totalRetryCount,\n        elapsed,\n        plan,\n        `Claude CLI failed with exit code ${result.exitCode}`,\n        getPhaseUsageTotals(EXECUTE_PHASE),\n      );\n      return result.exitCode;\n    }\n\n    // Success — reset retry counter\n    retryCount = 0;\n    plan = await loadTaskPlan(paths.prdFile);\n    plan = clearLastError(plan, iterationStartedAt);\n    await saveTaskPlan(paths.prdFile, plan);\n\n    // Notify story progress listeners (e.g., listr2 subtasks)\n    const storyUpdateCb = getStoryUpdateCallback();\n    if (storyUpdateCb) {\n      storyUpdateCb(plan.userStories);\n    }\n    getSessionPublisher().publish({\n      type: 'stories:update',\n      at: isoNow(),\n      stories: plan.userStories,\n    });\n\n    // Story attribution — an approximation by construction: the CLI reports a\n    // single usage for the whole iteration, so the stories that flipped to\n    // passing in it split tokens, cost and duration evenly. With none, nothing\n    // is attributed and the whole cost stays on the execute phase. Published\n    // after stories:update, which rebuilds the stories array.\n    const completedStoryIds = newlyCompletedStoryIds(storiesBeforeIteration, plan.userStories);\n    if (completedStoryIds.length > 0) {\n      const storyShare = divideUsage(result.cost, completedStoryIds.length);\n      const storySeconds = Math.round(iterationSeconds / completedStoryIds.length);\n      for (const storyId of completedStoryIds) {\n        publishStoryMetrics(storyId, storyShare, storySeconds);\n      }\n\n      // The same shares also land on tasks.json, so the numbers outlive the\n      // session and are readable with web monitoring off. Persisting them is\n      // observational: a write failure must never change the iteration's\n      // outcome, so the plan in memory only advances when the write succeeded.\n      const planWithMetrics = applyStoryMetrics(plan, completedStoryIds, storyShare, storySeconds);\n      try {\n        await saveTaskPlan(paths.prdFile, planWithMetrics);\n        plan = planWithMetrics;\n      } catch {\n        // Metrics are a nice-to-have; the iteration succeeded regardless.\n      }\n    }\n\n    getSessionPublisher().publish({ type: 'iteration:end', at: isoNow(), iteration: i });\n    publishIterationMetrics(i, result.cost, iterationSeconds);\n    // Low-frequency commit/PR enrichment: iteration end is one of the only\n    // two sanctioned points (the other is phase boundaries in run.ts).\n    await publishGitState(getSessionPublisher());\n\n    // Check for completion signal\n    if (result.output.includes('<promise>COMPLETE</promise>')) {\n      plan = await loadTaskPlan(paths.prdFile);\n      if (allStoriesPass(plan) && !hasPendingCorrection(plan)) {\n        plan = markIssueCompleted(plan);\n        await saveTaskPlan(paths.prdFile, plan);\n\n        const elapsed = Math.floor((Date.now() - startTime) / 1000);\n        printSummaryBox(\n          'success',\n          i,\n          totalRetryCount,\n          elapsed,\n          plan,\n          undefined,\n          getPhaseUsageTotals(EXECUTE_PHASE),\n        );\n        return 0;\n      }\n\n      plan = setLastError(\n        plan,\n        'invalid_completion_signal',\n        hasPendingCorrection(plan)\n          ? 'Claude returned <promise>COMPLETE</promise> while lastReviewFindings was still set.'\n          : 'Claude returned <promise>COMPLETE</promise> before every story had passes=true.',\n      );\n      await saveTaskPlan(paths.prdFile, plan);\n\n      emitLog('');\n      printWarning(\n        hasPendingCorrection(plan)\n          ? 'Claude returned a completion signal, but lastReviewFindings is still set. Ignoring completion and continuing.'\n          : 'Claude returned a completion signal, but tasks.json still has pending stories. Ignoring completion and continuing.',\n      );\n    }\n\n    if (isVerbose()) {\n      printSuccess(`Iteration ${i} complete. Continuing...`);\n    }\n    await sleep(2);\n  }\n\n  // Reached max iterations\n  const elapsed = Math.floor((Date.now() - startTime) / 1000);\n  plan = await loadTaskPlan(paths.prdFile);\n  printSummaryBox(\n    'incomplete',\n    config.maxIterations ?? i,\n    totalRetryCount,\n    elapsed,\n    plan,\n    'Reached max iterations without completing all tasks.',\n    getPhaseUsageTotals(EXECUTE_PHASE),\n  );\n  return 1;\n}\n","import chalk from 'chalk';\nimport { getOutputCallback } from '../core/verbose.js';\nimport type { UserStory } from '../types.js';\nimport { getIcons, useColor, useUnicode } from './logger.js';\n\n/**\n * Print a visual progress bar showing passed/total stories.\n */\nexport function printProgressBar(passed: number, total: number): string {\n  const barWidth = 20;\n  let pct = 0;\n  let filled = 0;\n\n  if (total > 0) {\n    pct = Math.floor((passed * 100) / total);\n    filled = Math.floor((passed * barWidth) / total);\n  }\n\n  const empty = barWidth - filled;\n  const fillChar = useUnicode() ? '\\u2588' : '#';\n  const emptyChar = useUnicode() ? '\\u2591' : '-';\n\n  const bar = fillChar.repeat(filled) + emptyChar.repeat(empty);\n  const text = `${passed}/${total} (${pct}%)`;\n\n  if (useColor()) {\n    return `${chalk.green(bar)} ${text}`;\n  }\n  return `${bar} ${text}`;\n}\n\n/**\n * Print the iteration header showing story statuses and progress bar.\n *\n * When a global output callback is set (e.g., inside a listr2 task),\n * output is routed through it instead of console.log.\n */\nexport function printIterationHeader(\n  iteration: number,\n  maxIter: number | undefined,\n  stories: UserStory[],\n): void {\n  const icons = getIcons();\n  const colored = useColor();\n  const cb = getOutputCallback();\n\n  const iterLabel = maxIter ? `Iteration ${iteration} of ${maxIter}` : `Iteration ${iteration}`;\n\n  const total = stories.length;\n  const passed = stories.filter((s) => s.passes).length;\n\n  const lines: string[] = [];\n\n  if (colored) {\n    lines.push(chalk.blue(`\\u2501\\u2501\\u2501 ${icons.start} ${iterLabel} \\u2501\\u2501\\u2501`));\n  } else {\n    lines.push(`--- ${icons.start} ${iterLabel} ---`);\n  }\n\n  // Display each story status\n  let foundFirstPending = false;\n  for (const story of stories) {\n    let icon: string;\n    let colorFn: (s: string) => string;\n\n    if (story.passes) {\n      icon = icons.success;\n      colorFn = colored ? chalk.green : (s: string) => s;\n    } else if (!foundFirstPending) {\n      // First non-passing story = current in-progress\n      icon = icons.pending;\n      colorFn = colored ? chalk.yellow : (s: string) => s;\n      foundFirstPending = true;\n    } else {\n      // Not yet reached\n      icon = icons.notReached;\n      colorFn = colored ? chalk.gray : (s: string) => s;\n    }\n\n    lines.push(colorFn(`  ${icon} ${story.id}: ${story.title}`));\n  }\n\n  lines.push(`  ${printProgressBar(passed, total)}`);\n\n  if (cb) {\n    // Send as single output to listr2 task context\n    cb(lines.join('\\n'));\n  } else {\n    console.log('');\n    for (const line of lines) {\n      console.log(line);\n    }\n    console.log('');\n  }\n}\n","import chalk from 'chalk';\nimport { type ClaudeUsage, formatTokens } from '../core/metrics.js';\nimport type { EngineConfig, PrReviewRecommendation, TaskPlan } from '../types.js';\nimport {\n  formatDuration,\n  getIcons,\n  getTermWidth,\n  printSuccess,\n  printWarning,\n  useColor,\n  useUnicode,\n} from './logger.js';\n\n/**\n * Truncate or pad a string to fit within a given width.\n */\nfunction fitLine(text: string, width: number): string {\n  if (text.length > width) {\n    return text.substring(0, width);\n  }\n  return text.padEnd(width);\n}\n\n/**\n * Print a box with border characters around content lines.\n * Lines equal to \"---\" render as separator rows.\n */\nexport function printBox(lines: string[]): void {\n  const colored = useColor();\n  const unicode = useUnicode();\n  const termWidth = getTermWidth();\n\n  // Find max content width\n  let maxContentWidth = 0;\n  for (const line of lines) {\n    if (line !== '---' && line.length > maxContentWidth) {\n      maxContentWidth = line.length;\n    }\n  }\n\n  // Cap to terminal width (border + padding = 4 chars)\n  const available = termWidth - 4;\n  if (maxContentWidth > available) {\n    maxContentWidth = available;\n  }\n  if (maxContentWidth < 20) {\n    maxContentWidth = 20;\n  }\n\n  // Box drawing characters\n  const tl = unicode ? '\\u256D' : '+';\n  const tr = unicode ? '\\u256E' : '+';\n  const bl = unicode ? '\\u2570' : '+';\n  const br = unicode ? '\\u256F' : '+';\n  const h = unicode ? '\\u2500' : '-';\n  const v = unicode ? '\\u2502' : '|';\n  const sepL = unicode ? '\\u251C' : '+';\n  const sepR = unicode ? '\\u2524' : '+';\n\n  const hrule = h.repeat(maxContentWidth + 2);\n\n  const blue = colored ? chalk.blue : (s: string) => s;\n  const _reset = (s: string) => s;\n\n  // Top border\n  console.log(blue(`${tl}${hrule}${tr}`));\n\n  // Content lines\n  for (const line of lines) {\n    if (line === '---') {\n      console.log(blue(`${sepL}${hrule}${sepR}`));\n    } else {\n      const fitted = fitLine(line, maxContentWidth);\n      console.log(`${blue(v)} ${fitted} ${blue(v)}`);\n    }\n  }\n\n  // Bottom border\n  console.log(blue(`${bl}${hrule}${br}`));\n}\n\n/**\n * Print the startup header box showing engine configuration.\n */\nexport function printStartupHeader(config: EngineConfig, plan: TaskPlan): void {\n  const icons = getIcons();\n\n  const storiesTotal = plan.userStories.length;\n  const storiesPassing = plan.userStories.filter((s) => s.passes).length;\n  const branchName = plan.branchName ?? 'N/A';\n\n  const issueLabel = config.issueNumber ? `Issue #${config.issueNumber}` : 'Standalone mode';\n\n  const maxIterLabel =\n    config.maxIterations !== undefined ? String(config.maxIterations) : 'unlimited';\n\n  const retryLabel = config.retryForever\n    ? 'unlimited retries'\n    : `${config.retryLimit} consecutive retries`;\n\n  printBox([\n    `${icons.start} Issue Flow`,\n    '---',\n    `Issue:       ${issueLabel}`,\n    `Branch:      ${branchName}`,\n    `Stories:     ${storiesPassing}/${storiesTotal} passing`,\n    `Iterations:  ${maxIterLabel}`,\n    `Retries:     ${retryLabel}`,\n  ]);\n}\n\n// Re-export formatDuration from logger to maintain backwards compatibility\nexport { formatDuration } from './logger.js';\n\n/**\n * Print the final summary box.\n */\nexport function printSummaryBox(\n  status: 'success' | 'incomplete' | 'failed',\n  iterations: number,\n  totalRetries: number,\n  elapsedSeconds: number,\n  plan: TaskPlan,\n  extraInfo?: string,\n  /**\n   * Tokens and cost spent by this run, already resolved by the caller (the\n   * process-owned counters in `core/session-metrics.ts`, never the session\n   * snapshot — that one is empty whenever web monitoring is off). Omitted or\n   * empty means \"the CLI reported nothing\", and the line is skipped entirely.\n   */\n  usage?: ClaudeUsage | null,\n): void {\n  const icons = getIcons();\n\n  const storiesTotal = plan.userStories.length;\n  const storiesPassing = plan.userStories.filter((s) => s.passes).length;\n  const duration = formatDuration(elapsedSeconds);\n\n  let statusIcon: string;\n  let statusLabel: string;\n\n  switch (status) {\n    case 'success':\n      statusIcon = icons.success;\n      statusLabel = 'Completed';\n      break;\n    case 'incomplete':\n      statusIcon = icons.warn;\n      statusLabel = 'Incomplete';\n      break;\n    case 'failed':\n      statusIcon = icons.fail;\n      statusLabel = 'Failed';\n      break;\n  }\n\n  const boxLines = [\n    `${icons.end} Issue Flow Summary`,\n    '---',\n    `Status:      ${statusIcon} ${statusLabel}`,\n    `Stories:     ${storiesPassing}/${storiesTotal} passing`,\n    `Iterations:  ${iterations}`,\n    `Duration:    ${duration}`,\n  ];\n\n  const tokens = formatTokens(usage);\n  if (tokens !== '') {\n    boxLines.push(`Tokens:      ${tokens}`);\n  }\n\n  boxLines.push(`Retries:     ${totalRetries}`);\n\n  if (extraInfo) {\n    boxLines.push('---');\n    boxLines.push(extraInfo);\n  }\n\n  console.log('');\n  printBox(boxLines);\n}\n\n/**\n * What the optional `pr-review` phase produced, as far as the summary cares.\n * `null` in `recommendation` means the verdict could not be recovered from\n * disk — the exit code still told us whether changes were requested.\n */\nexport interface RunSummaryPrReview {\n  requestedChanges: boolean;\n  recommendation: PrReviewRecommendation | null;\n  reportPath: string | null;\n}\n\n/**\n * Everything the final `run` summary prints, already resolved by the caller.\n */\nexport interface RunSummaryInfo {\n  issueNumber: string;\n  /** 'unknown' when the branch could not be detected. */\n  branchName: string;\n  /** Pipelines run with --no-branch open no Pull Request. */\n  noBranch: boolean;\n  storyCount: number;\n  elapsedSeconds: number;\n  /** 'unknown' when no Pull Request could be resolved. */\n  prUrl: string;\n  /** Only set when the pr-review phase actually ran. */\n  prReview?: RunSummaryPrReview | null;\n  /**\n   * Tokens and cost of the whole pipeline, from the process-owned counters in\n   * `core/session-metrics.ts`. Absent or empty omits the line.\n   */\n  usage?: ClaudeUsage | null;\n}\n\n/**\n * Detail lines of the final `run` summary (everything below the headline).\n *\n * Kept separate from the printing so the shape is testable without capturing\n * stdout. Without `prReview` the lines are exactly the ones the pipeline has\n * always printed.\n */\nexport function buildRunSummaryLines(info: RunSummaryInfo): string[] {\n  const lines = [\n    `  Branch:   ${info.branchName}${info.noBranch ? ' (current)' : ''}`,\n    `  Stories:  ${info.storyCount}`,\n    `  Duration: ${formatDuration(info.elapsedSeconds)}`,\n  ];\n\n  // Skipped altogether when the CLI reported nothing — better no line than\n  // \"0 in / 0 out\" or \"~$NaN\".\n  const tokens = formatTokens(info.usage);\n  if (tokens !== '') {\n    lines.push(`  Tokens:   ${tokens}`);\n  }\n\n  if (!info.noBranch) {\n    lines.push(`  PR:       ${info.prUrl}`);\n  }\n\n  const review = info.prReview;\n  if (review) {\n    // The exit code is the source of truth for the verdict, so a report whose\n    // recommendation could not be read still reports REQUEST_CHANGES.\n    const verdict =\n      review.recommendation ?? (review.requestedChanges ? 'REQUEST_CHANGES' : 'unknown');\n    lines.push(`  Review:   ${verdict}`);\n    if (review.reportPath !== null) {\n      lines.push(`  Report:   ${review.reportPath}`);\n    }\n  }\n\n  return lines;\n}\n\n/**\n * Print the final summary of a `run` (the flat listing, not the box used by\n * the execute engine).\n */\nexport function printRunSummary(info: RunSummaryInfo): void {\n  console.log('');\n  if (info.prReview?.requestedChanges) {\n    printWarning(\n      `Pipeline finished for issue #${info.issueNumber}, but the PR review requested changes.`,\n    );\n  } else {\n    printSuccess(`Pipeline complete for issue #${info.issueNumber}!`);\n  }\n  for (const line of buildRunSummaryLines(info)) {\n    console.log(line);\n  }\n}\n","import { execa } from 'execa';\nimport type { ClaudeResult } from '../types.js';\nimport { type ClaudeUsage, parseUsage } from './metrics.js';\nimport { getOutputCallback } from './verbose.js';\n\n/**\n * Execute Claude CLI with a prompt piped to stdin.\n *\n * Runs: echo $PROMPT | claude --dangerously-skip-permissions --print --output-format json\n *\n * The JSON envelope is requested purely for observability: it carries the token\n * and cost metrics of the execute phase. Every flow decision keeps working off\n * the same values as before — `exitCode` and the assistant's text — so the\n * envelope is unwrapped here and never leaks to callers. Whenever stdout is not\n * parseable JSON (or the CLI failed), the behaviour falls back exactly to the\n * previous combined stdout+stderr text with no metrics.\n */\nexport async function executeClaude(prompt: string): Promise<ClaudeResult> {\n  const result = await execa(\n    'claude',\n    ['--dangerously-skip-permissions', '--print', '--output-format', 'json'],\n    {\n      input: prompt,\n      reject: false,\n      timeout: 0, // No timeout — let the engine handle iteration limits\n      stripFinalNewline: false,\n    },\n  );\n\n  // Combine stdout and stderr to match Bash's 2>&1 behavior\n  const stdout = result.stdout?.toString() ?? '';\n  const stderr = result.stderr?.toString() ?? '';\n  const exitCode = result.exitCode ?? 1;\n\n  let output = stdout + (stderr ? `\\n${stderr}` : '');\n  let cost: ClaudeUsage | null = null;\n\n  // Only unwrap on success: a failing CLI may print diagnostics on stderr that\n  // trimErrorMessage()/isTransientFailure() need to see verbatim.\n  if (exitCode === 0) {\n    try {\n      const parsed: unknown = JSON.parse(stdout);\n      const text = (parsed as { result?: unknown } | null)?.result;\n      // Non-string `result` would break the callers that treat output as text.\n      output = typeof text === 'string' ? text : stdout;\n      cost = parseUsage(parsed);\n    } catch {\n      // Not JSON — keep the raw combined output and report no metrics.\n    }\n  }\n\n  // Forward output through the global callback (listr2 renderer) when active\n  const onOutput = getOutputCallback();\n  if (onOutput) {\n    const trimmed = output.trim();\n    if (trimmed) {\n      onOutput(trimmed);\n    }\n  }\n\n  return {\n    exitCode,\n    output,\n    cost,\n  };\n}\n","import { createConfig, resolvePaths, validateDependencies } from '../config.js';\nimport { runEngine } from '../core/engine.js';\nimport { allStoriesPass, loadTaskPlan, saveTaskPlan } from '../core/state-manager.js';\nimport { printError } from '../ui/logger.js';\n\nexport interface ExecuteOptions {\n  issue?: string;\n  maxIterations?: number;\n  retryLimit?: number;\n  retryForever?: boolean;\n}\n\nexport async function runExecute(\n  positionalMaxIter: number | undefined,\n  options: ExecuteOptions,\n): Promise<number> {\n  const errors = await validateDependencies();\n  if (errors.length > 0) {\n    printError('The following required tools are not installed:');\n    for (const err of errors) {\n      console.log(err);\n    }\n    return 1;\n  }\n\n  const maxIterations = options.maxIterations ?? positionalMaxIter;\n\n  const config = createConfig({\n    issueNumber: options.issue,\n    maxIterations,\n    retryLimit: options.retryLimit,\n    retryForever: options.retryForever,\n  });\n\n  const paths = await resolvePaths(config);\n  const exitCode = await runEngine(config, paths);\n\n  // Update pipeline state if all stories pass\n  if (exitCode === 0 && config.issueNumber) {\n    try {\n      const plan = await loadTaskPlan(paths.prdFile);\n      if (allStoriesPass(plan)) {\n        plan.pipeline.executionCompleted = true;\n        await saveTaskPlan(paths.prdFile, plan);\n      }\n    } catch {\n      // Non-critical — engine already handled state\n    }\n  }\n\n  return 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package/dist/{chunk-TCOS2KFB.js → chunk-IWBHBDRU.js}

@@ -8,13 +8,20 @@ import {
   getSessionPublisher,
   isVerbose,
   isoNow,
+  parseUsage,
   useColor
-} from "./chunk-JNEHVQH5.js";
+} from "./chunk-6HGZYTAT.js";
 
 // src/core/headless.ts
 import { createInterface } from "readline";
 import chalk from "chalk";
 import { execa } from "execa";
+function pushRepeatedFlag(args, flag, values) {
+  if (!values || values.length === 0) return;
+  for (const value of values) {
+    args.push(flag, value);
+  }
+}
 function getToolContext(name, input) {
   switch (name) {
     case "Read":
@@ -87,7 +94,8 @@ function printStreamEvent(line, state, onOutput) {
     }
   }
 }
-async function runHeadlessVerbose(prompt, maxTurns, timeout, allowedTools, statusMessage, onOutput) {
+async function runHeadlessVerbose(options) {
+  const { prompt, maxTurns, timeout, allowedTools, addDirs, statusMessage, onOutput } = options;
   const icons = getIcons();
   const colored = useColor();
   const emit = onOutput ?? ((msg) => process.stderr.write(`${msg}
@@ -108,11 +116,8 @@ async function runHeadlessVerbose(prompt, maxTurns, timeout, allowedTools, statu
     "--max-turns",
     String(maxTurns)
   ];
-  if (allowedTools && allowedTools.length > 0) {
-    for (const tool of allowedTools) {
-      args.push("--allowedTools", tool);
-    }
-  }
+  pushRepeatedFlag(args, "--allowedTools", allowedTools);
+  pushRepeatedFlag(args, "--add-dir", addDirs);
   const subprocess = execa("claude", args, {
     stdin: "ignore",
     reject: false,
@@ -132,12 +137,7 @@ async function runHeadlessVerbose(prompt, maxTurns, timeout, allowedTools, statu
         if (event.type === "result") {
           resultText = event.result ?? "";
           isError = event.is_error === true;
-          if (event.total_cost_usd != null && event.usage) {
-            costData = {
-              inputTokens: event.usage.input_tokens,
-              outputTokens: event.usage.output_tokens
-            };
-          }
+          costData = parseUsage(event) ?? costData;
         }
       } catch {
       }
@@ -174,19 +174,21 @@ async function runHeadless(options) {
     timeout = 3e5,
     outputFormat = "json",
     allowedTools,
+    addDirs,
     statusMessage,
     onOutput
   } = options;
   if (isVerbose()) {
     const effectiveOnOutput = onOutput ?? getOutputCallback();
-    return runHeadlessVerbose(
+    return runHeadlessVerbose({
       prompt,
       maxTurns,
       timeout,
       allowedTools,
+      addDirs,
       statusMessage,
-      effectiveOnOutput
-    );
+      onOutput: effectiveOnOutput
+    });
   }
   const spinner = statusMessage ? createSpinner(statusMessage).start() : null;
   let timer = null;
@@ -203,11 +205,8 @@ async function runHeadless(options) {
     "--max-turns",
     String(maxTurns)
   ];
-  if (allowedTools && allowedTools.length > 0) {
-    for (const tool of allowedTools) {
-      args.push("--allowedTools", tool);
-    }
-  }
+  pushRepeatedFlag(args, "--allowedTools", allowedTools);
+  pushRepeatedFlag(args, "--add-dir", addDirs);
   try {
     const proc = await execa("claude", args, {
       stdin: "ignore",
@@ -237,7 +236,7 @@ async function runHeadless(options) {
         return {
           success: true,
           result: parsed.result ?? stdout,
-          cost: parsed.cost_usd != null ? { inputTokens: parsed.num_input_tokens, outputTokens: parsed.num_output_tokens } : null,
+          cost: parseUsage(parsed),
           error: null
         };
       } catch {
@@ -280,4 +279,4 @@ async function runHeadless(options) {
 export {
   runHeadless
 };
-//# sourceMappingURL=chunk-TCOS2KFB.js.map
+//# sourceMappingURL=chunk-IWBHBDRU.js.map