iosm-cli 0.1.0

package/dist/utils/tools-manager.js

@@ -0,0 +1,251 @@
+import chalk from "chalk";
+import { spawnSync } from "child_process";
+import extractZip from "extract-zip";
+import { chmodSync, createWriteStream, existsSync, mkdirSync, readdirSync, renameSync, rmSync } from "fs";
+import { arch, platform } from "os";
+import { join } from "path";
+import { Readable } from "stream";
+import { finished } from "stream/promises";
+import { APP_NAME, ENV_OFFLINE, getBinDir } from "../config.js";
+const TOOLS_DIR = getBinDir();
+const NETWORK_TIMEOUT_MS = 10000;
+function isOfflineModeEnabled() {
+    const value = process.env[ENV_OFFLINE] || process.env.PI_OFFLINE;
+    if (!value)
+        return false;
+    return value === "1" || value.toLowerCase() === "true" || value.toLowerCase() === "yes";
+}
+const TOOLS = {
+    fd: {
+        name: "fd",
+        repo: "sharkdp/fd",
+        binaryName: "fd",
+        tagPrefix: "v",
+        getAssetName: (version, plat, architecture) => {
+            if (plat === "darwin") {
+                const archStr = architecture === "arm64" ? "aarch64" : "x86_64";
+                return `fd-v${version}-${archStr}-apple-darwin.tar.gz`;
+            }
+            else if (plat === "linux") {
+                const archStr = architecture === "arm64" ? "aarch64" : "x86_64";
+                return `fd-v${version}-${archStr}-unknown-linux-gnu.tar.gz`;
+            }
+            else if (plat === "win32") {
+                const archStr = architecture === "arm64" ? "aarch64" : "x86_64";
+                return `fd-v${version}-${archStr}-pc-windows-msvc.zip`;
+            }
+            return null;
+        },
+    },
+    rg: {
+        name: "ripgrep",
+        repo: "BurntSushi/ripgrep",
+        binaryName: "rg",
+        tagPrefix: "",
+        getAssetName: (version, plat, architecture) => {
+            if (plat === "darwin") {
+                const archStr = architecture === "arm64" ? "aarch64" : "x86_64";
+                return `ripgrep-${version}-${archStr}-apple-darwin.tar.gz`;
+            }
+            else if (plat === "linux") {
+                if (architecture === "arm64") {
+                    return `ripgrep-${version}-aarch64-unknown-linux-gnu.tar.gz`;
+                }
+                return `ripgrep-${version}-x86_64-unknown-linux-musl.tar.gz`;
+            }
+            else if (plat === "win32") {
+                const archStr = architecture === "arm64" ? "aarch64" : "x86_64";
+                return `ripgrep-${version}-${archStr}-pc-windows-msvc.zip`;
+            }
+            return null;
+        },
+    },
+};
+// Check if a command exists in PATH by trying to run it
+function commandExists(cmd) {
+    try {
+        const result = spawnSync(cmd, ["--version"], { stdio: "pipe" });
+        // Check for ENOENT error (command not found)
+        return result.error === undefined || result.error === null;
+    }
+    catch {
+        return false;
+    }
+}
+// Get the path to a tool (system-wide or in our tools dir)
+export function getToolPath(tool) {
+    const config = TOOLS[tool];
+    if (!config)
+        return null;
+    // Check our tools directory first
+    const localPath = join(TOOLS_DIR, config.binaryName + (platform() === "win32" ? ".exe" : ""));
+    if (existsSync(localPath)) {
+        return localPath;
+    }
+    // Check system PATH - if found, just return the command name (it's in PATH)
+    if (commandExists(config.binaryName)) {
+        return config.binaryName;
+    }
+    return null;
+}
+// Fetch latest release version from GitHub
+async function getLatestVersion(repo) {
+    const response = await fetch(`https://api.github.com/repos/${repo}/releases/latest`, {
+        headers: { "User-Agent": `${APP_NAME}-coding-agent` },
+        signal: AbortSignal.timeout(NETWORK_TIMEOUT_MS),
+    });
+    if (!response.ok) {
+        throw new Error(`GitHub API error: ${response.status}`);
+    }
+    const data = (await response.json());
+    return data.tag_name.replace(/^v/, "");
+}
+// Download a file from URL
+async function downloadFile(url, dest) {
+    const response = await fetch(url, {
+        signal: AbortSignal.timeout(NETWORK_TIMEOUT_MS),
+    });
+    if (!response.ok) {
+        throw new Error(`Failed to download: ${response.status}`);
+    }
+    if (!response.body) {
+        throw new Error("No response body");
+    }
+    const fileStream = createWriteStream(dest);
+    await finished(Readable.fromWeb(response.body).pipe(fileStream));
+}
+function findBinaryRecursively(rootDir, binaryFileName) {
+    const stack = [rootDir];
+    while (stack.length > 0) {
+        const currentDir = stack.pop();
+        if (!currentDir)
+            continue;
+        const entries = readdirSync(currentDir, { withFileTypes: true });
+        for (const entry of entries) {
+            const fullPath = join(currentDir, entry.name);
+            if (entry.isFile() && entry.name === binaryFileName) {
+                return fullPath;
+            }
+            if (entry.isDirectory()) {
+                stack.push(fullPath);
+            }
+        }
+    }
+    return null;
+}
+// Download and install a tool
+async function downloadTool(tool) {
+    const config = TOOLS[tool];
+    if (!config)
+        throw new Error(`Unknown tool: ${tool}`);
+    const plat = platform();
+    const architecture = arch();
+    // Get latest version
+    const version = await getLatestVersion(config.repo);
+    // Get asset name for this platform
+    const assetName = config.getAssetName(version, plat, architecture);
+    if (!assetName) {
+        throw new Error(`Unsupported platform: ${plat}/${architecture}`);
+    }
+    // Create tools directory
+    mkdirSync(TOOLS_DIR, { recursive: true });
+    const downloadUrl = `https://github.com/${config.repo}/releases/download/${config.tagPrefix}${version}/${assetName}`;
+    const archivePath = join(TOOLS_DIR, assetName);
+    const binaryExt = plat === "win32" ? ".exe" : "";
+    const binaryPath = join(TOOLS_DIR, config.binaryName + binaryExt);
+    // Download
+    await downloadFile(downloadUrl, archivePath);
+    // Extract into a unique temp directory. fd and rg downloads can run concurrently
+    // during startup, so sharing a fixed directory causes races.
+    const extractDir = join(TOOLS_DIR, `extract_tmp_${config.binaryName}_${process.pid}_${Date.now()}_${Math.random().toString(36).slice(2, 10)}`);
+    mkdirSync(extractDir, { recursive: true });
+    try {
+        if (assetName.endsWith(".tar.gz")) {
+            const extractResult = spawnSync("tar", ["xzf", archivePath, "-C", extractDir], { stdio: "pipe" });
+            if (extractResult.error || extractResult.status !== 0) {
+                const errMsg = extractResult.error?.message ?? extractResult.stderr?.toString().trim() ?? "unknown error";
+                throw new Error(`Failed to extract ${assetName}: ${errMsg}`);
+            }
+        }
+        else if (assetName.endsWith(".zip")) {
+            await extractZip(archivePath, { dir: extractDir });
+        }
+        else {
+            throw new Error(`Unsupported archive format: ${assetName}`);
+        }
+        // Find the binary in extracted files. Some archives contain files directly
+        // at root, others nest under a versioned subdirectory.
+        const binaryFileName = config.binaryName + binaryExt;
+        const extractedDir = join(extractDir, assetName.replace(/\.(tar\.gz|zip)$/, ""));
+        const extractedBinaryCandidates = [join(extractedDir, binaryFileName), join(extractDir, binaryFileName)];
+        let extractedBinary = extractedBinaryCandidates.find((candidate) => existsSync(candidate));
+        if (!extractedBinary) {
+            extractedBinary = findBinaryRecursively(extractDir, binaryFileName) ?? undefined;
+        }
+        if (extractedBinary) {
+            renameSync(extractedBinary, binaryPath);
+        }
+        else {
+            throw new Error(`Binary not found in archive: expected ${binaryFileName} under ${extractDir}`);
+        }
+        // Make executable (Unix only)
+        if (plat !== "win32") {
+            chmodSync(binaryPath, 0o755);
+        }
+    }
+    finally {
+        // Cleanup
+        rmSync(archivePath, { force: true });
+        rmSync(extractDir, { recursive: true, force: true });
+    }
+    return binaryPath;
+}
+// Termux package names for tools
+const TERMUX_PACKAGES = {
+    fd: "fd",
+    rg: "ripgrep",
+};
+// Ensure a tool is available, downloading if necessary
+// Returns the path to the tool, or null if unavailable
+export async function ensureTool(tool, silent = false) {
+    const existingPath = getToolPath(tool);
+    if (existingPath) {
+        return existingPath;
+    }
+    const config = TOOLS[tool];
+    if (!config)
+        return undefined;
+    if (isOfflineModeEnabled()) {
+        if (!silent) {
+            console.log(chalk.yellow(`${config.name} not found. Offline mode enabled, skipping download.`));
+        }
+        return undefined;
+    }
+    // On Android/Termux, Linux binaries don't work due to Bionic libc incompatibility.
+    // Users must install via pkg.
+    if (platform() === "android") {
+        const pkgName = TERMUX_PACKAGES[tool] ?? tool;
+        if (!silent) {
+            console.log(chalk.yellow(`${config.name} not found. Install with: pkg install ${pkgName}`));
+        }
+        return undefined;
+    }
+    // Tool not found - download it
+    if (!silent) {
+        console.log(chalk.dim(`${config.name} not found. Downloading...`));
+    }
+    try {
+        const path = await downloadTool(tool);
+        if (!silent) {
+            console.log(chalk.dim(`${config.name} installed to ${path}`));
+        }
+        return path;
+    }
+    catch (e) {
+        if (!silent) {
+            console.log(chalk.yellow(`Failed to download ${config.name}: ${e instanceof Error ? e.message : e}`));
+        }
+        return undefined;
+    }
+}
+//# sourceMappingURL=tools-manager.js.map

package/dist/utils/tools-manager.js.map

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\"rg\",\n\t\ttagPrefix: \"\",\n\t\tgetAssetName: (version, plat, architecture) => {\n\t\t\tif (plat === \"darwin\") {\n\t\t\t\tconst archStr = architecture === \"arm64\" ? \"aarch64\" : \"x86_64\";\n\t\t\t\treturn `ripgrep-${version}-${archStr}-apple-darwin.tar.gz`;\n\t\t\t} else if (plat === \"linux\") {\n\t\t\t\tif (architecture === \"arm64\") {\n\t\t\t\t\treturn `ripgrep-${version}-aarch64-unknown-linux-gnu.tar.gz`;\n\t\t\t\t}\n\t\t\t\treturn `ripgrep-${version}-x86_64-unknown-linux-musl.tar.gz`;\n\t\t\t} else if (plat === \"win32\") {\n\t\t\t\tconst archStr = architecture === \"arm64\" ? \"aarch64\" : \"x86_64\";\n\t\t\t\treturn `ripgrep-${version}-${archStr}-pc-windows-msvc.zip`;\n\t\t\t}\n\t\t\treturn null;\n\t\t},\n\t},\n};\n\n// Check if a command exists in PATH by trying to run it\nfunction commandExists(cmd: string): boolean {\n\ttry {\n\t\tconst result = spawnSync(cmd, [\"--version\"], { stdio: \"pipe\" });\n\t\t// Check for ENOENT error (command not found)\n\t\treturn result.error === undefined || result.error === null;\n\t} catch {\n\t\treturn false;\n\t}\n}\n\n// Get the path to a tool (system-wide or in our tools dir)\nexport function getToolPath(tool: \"fd\" | \"rg\"): string | null {\n\tconst config = TOOLS[tool];\n\tif (!config) return null;\n\n\t// Check our tools directory first\n\tconst localPath = join(TOOLS_DIR, config.binaryName + (platform() === \"win32\" ? \".exe\" : \"\"));\n\tif (existsSync(localPath)) {\n\t\treturn localPath;\n\t}\n\n\t// Check system PATH - if found, just return the command name (it's in PATH)\n\tif (commandExists(config.binaryName)) {\n\t\treturn config.binaryName;\n\t}\n\n\treturn null;\n}\n\n// Fetch latest release version from GitHub\nasync function getLatestVersion(repo: string): Promise<string> {\n\tconst response = await fetch(`https://api.github.com/repos/${repo}/releases/latest`, {\n\t\theaders: { \"User-Agent\": `${APP_NAME}-coding-agent` },\n\t\tsignal: AbortSignal.timeout(NETWORK_TIMEOUT_MS),\n\t});\n\n\tif (!response.ok) {\n\t\tthrow new Error(`GitHub API error: ${response.status}`);\n\t}\n\n\tconst data = (await response.json()) as { tag_name: string };\n\treturn data.tag_name.replace(/^v/, \"\");\n}\n\n// Download a file from URL\nasync function downloadFile(url: string, dest: string): Promise<void> {\n\tconst response = await fetch(url, {\n\t\tsignal: AbortSignal.timeout(NETWORK_TIMEOUT_MS),\n\t});\n\n\tif (!response.ok) {\n\t\tthrow new Error(`Failed to download: ${response.status}`);\n\t}\n\n\tif (!response.body) {\n\t\tthrow new Error(\"No response body\");\n\t}\n\n\tconst fileStream = createWriteStream(dest);\n\tawait finished(Readable.fromWeb(response.body as any).pipe(fileStream));\n}\n\nfunction findBinaryRecursively(rootDir: string, binaryFileName: string): string | null {\n\tconst stack: string[] = [rootDir];\n\n\twhile (stack.length > 0) {\n\t\tconst currentDir = stack.pop();\n\t\tif (!currentDir) continue;\n\n\t\tconst entries = readdirSync(currentDir, { withFileTypes: true });\n\t\tfor (const entry of entries) {\n\t\t\tconst fullPath = join(currentDir, entry.name);\n\t\t\tif (entry.isFile() && entry.name === binaryFileName) {\n\t\t\t\treturn fullPath;\n\t\t\t}\n\t\t\tif (entry.isDirectory()) {\n\t\t\t\tstack.push(fullPath);\n\t\t\t}\n\t\t}\n\t}\n\n\treturn null;\n}\n\n// Download and install a tool\nasync function downloadTool(tool: \"fd\" | \"rg\"): Promise<string> {\n\tconst config = TOOLS[tool];\n\tif (!config) throw new Error(`Unknown tool: ${tool}`);\n\n\tconst plat = platform();\n\tconst architecture = arch();\n\n\t// Get latest version\n\tconst version = await getLatestVersion(config.repo);\n\n\t// Get asset name for this platform\n\tconst assetName = config.getAssetName(version, plat, architecture);\n\tif (!assetName) {\n\t\tthrow new Error(`Unsupported platform: ${plat}/${architecture}`);\n\t}\n\n\t// Create tools directory\n\tmkdirSync(TOOLS_DIR, { recursive: true });\n\n\tconst downloadUrl = `https://github.com/${config.repo}/releases/download/${config.tagPrefix}${version}/${assetName}`;\n\tconst archivePath = join(TOOLS_DIR, assetName);\n\tconst binaryExt = plat === \"win32\" ? \".exe\" : \"\";\n\tconst binaryPath = join(TOOLS_DIR, config.binaryName + binaryExt);\n\n\t// Download\n\tawait downloadFile(downloadUrl, archivePath);\n\n\t// Extract into a unique temp directory. fd and rg downloads can run concurrently\n\t// during startup, so sharing a fixed directory causes races.\n\tconst extractDir = join(\n\t\tTOOLS_DIR,\n\t\t`extract_tmp_${config.binaryName}_${process.pid}_${Date.now()}_${Math.random().toString(36).slice(2, 10)}`,\n\t);\n\tmkdirSync(extractDir, { recursive: true });\n\n\ttry {\n\t\tif (assetName.endsWith(\".tar.gz\")) {\n\t\t\tconst extractResult = spawnSync(\"tar\", [\"xzf\", archivePath, \"-C\", extractDir], { stdio: \"pipe\" });\n\t\t\tif (extractResult.error || extractResult.status !== 0) {\n\t\t\t\tconst errMsg = extractResult.error?.message ?? extractResult.stderr?.toString().trim() ?? \"unknown error\";\n\t\t\t\tthrow new Error(`Failed to extract ${assetName}: ${errMsg}`);\n\t\t\t}\n\t\t} else if (assetName.endsWith(\".zip\")) {\n\t\t\tawait extractZip(archivePath, { dir: extractDir });\n\t\t} else {\n\t\t\tthrow new Error(`Unsupported archive format: ${assetName}`);\n\t\t}\n\n\t\t// Find the binary in extracted files. Some archives contain files directly\n\t\t// at root, others nest under a versioned subdirectory.\n\t\tconst binaryFileName = config.binaryName + binaryExt;\n\t\tconst extractedDir = join(extractDir, assetName.replace(/\\.(tar\\.gz|zip)$/, \"\"));\n\t\tconst extractedBinaryCandidates = [join(extractedDir, binaryFileName), join(extractDir, binaryFileName)];\n\t\tlet extractedBinary = extractedBinaryCandidates.find((candidate) => existsSync(candidate));\n\n\t\tif (!extractedBinary) {\n\t\t\textractedBinary = findBinaryRecursively(extractDir, binaryFileName) ?? undefined;\n\t\t}\n\n\t\tif (extractedBinary) {\n\t\t\trenameSync(extractedBinary, binaryPath);\n\t\t} else {\n\t\t\tthrow new Error(`Binary not found in archive: expected ${binaryFileName} under ${extractDir}`);\n\t\t}\n\n\t\t// Make executable (Unix only)\n\t\tif (plat !== \"win32\") {\n\t\t\tchmodSync(binaryPath, 0o755);\n\t\t}\n\t} finally {\n\t\t// Cleanup\n\t\trmSync(archivePath, { force: true });\n\t\trmSync(extractDir, { recursive: true, force: true });\n\t}\n\n\treturn binaryPath;\n}\n\n// Termux package names for tools\nconst TERMUX_PACKAGES: Record<string, string> = {\n\tfd: \"fd\",\n\trg: \"ripgrep\",\n};\n\n// Ensure a tool is available, downloading if necessary\n// Returns the path to the tool, or null if unavailable\nexport async function ensureTool(tool: \"fd\" | \"rg\", silent: boolean = false): Promise<string | undefined> {\n\tconst existingPath = getToolPath(tool);\n\tif (existingPath) {\n\t\treturn existingPath;\n\t}\n\n\tconst config = TOOLS[tool];\n\tif (!config) return undefined;\n\n\tif (isOfflineModeEnabled()) {\n\t\tif (!silent) {\n\t\t\tconsole.log(chalk.yellow(`${config.name} not found. Offline mode enabled, skipping download.`));\n\t\t}\n\t\treturn undefined;\n\t}\n\n\t// On Android/Termux, Linux binaries don't work due to Bionic libc incompatibility.\n\t// Users must install via pkg.\n\tif (platform() === \"android\") {\n\t\tconst pkgName = TERMUX_PACKAGES[tool] ?? tool;\n\t\tif (!silent) {\n\t\t\tconsole.log(chalk.yellow(`${config.name} not found. Install with: pkg install ${pkgName}`));\n\t\t}\n\t\treturn undefined;\n\t}\n\n\t// Tool not found - download it\n\tif (!silent) {\n\t\tconsole.log(chalk.dim(`${config.name} not found. Downloading...`));\n\t}\n\n\ttry {\n\t\tconst path = await downloadTool(tool);\n\t\tif (!silent) {\n\t\t\tconsole.log(chalk.dim(`${config.name} installed to ${path}`));\n\t\t}\n\t\treturn path;\n\t} catch (e) {\n\t\tif (!silent) {\n\t\t\tconsole.log(chalk.yellow(`Failed to download ${config.name}: ${e instanceof Error ? e.message : e}`));\n\t\t}\n\t\treturn undefined;\n\t}\n}\n"]}

package/docs/README.md

@@ -0,0 +1,32 @@
+# iosm-cli Documentation
+
+Comprehensive documentation for `iosm-cli` — an AI-powered engineering agent with IOSM methodology.
+
+## Quick Navigation
+
+| Document | Description |
+|----------|-------------|
+| [Getting Started](./getting-started.md) | Installation, provider setup, first run, troubleshooting |
+| [CLI Reference](./cli-reference.md) | Complete flag and option reference with examples |
+| [Interactive Mode](./interactive-mode.md) | Slash commands, keyboard shortcuts, profiles, streaming |
+| [IOSM Init & Cycles](./iosm-init-and-cycles.md) | IOSM workspace bootstrap, cycle operations, metrics |
+| [Orchestration & Subagents](./orchestration-and-subagents.md) | Task delegation, parallel execution, custom agents |
+| [Extensions & Packages](./extensions-packages-themes.md) | Extension API, skills, themes, package management |
+| [Configuration](./configuration.md) | Settings hierarchy, environment variables, profiles |
+| [Sessions & Export](./sessions-traces-export.md) | Persistence, branching, traces, HTML export, sharing |
+| [JSON/RPC/SDK](./rpc-json-sdk.md) | Programmatic integrations, event streaming, SDK |
+| [Development & Testing](./development-and-testing.md) | Contributing, testing, architecture |
+
+## Related Resources
+
+| Resource | Location |
+|----------|----------|
+| [IOSM Specification](../iosm-spec.md) | Full methodology specification (1600 lines) |
+| [Extension Examples](../examples/extensions/) | 66 extension examples |
+| [SDK Examples](../examples/sdk/) | 12 programmatic usage examples |
+| [CONTRIBUTING](../CONTRIBUTING.md) | Contribution guide |
+| [CHANGELOG](../CHANGELOG.md) | Release history |
+
+## Scope
+
+This documentation covers the standalone `iosm-cli` repository. Legacy/reference material has been archived under `archive/` and is excluded from the active documentation surface.

package/docs/cli-reference.md

@@ -0,0 +1,342 @@
+# CLI Reference
+
+Complete reference for all `iosm-cli` command-line options and subcommands.
+
+## Usage
+
+```bash
+iosm [options] [@files...] [messages...]
+```
+
+## Top-Level Commands
+
+### `iosm init`
+
+Initialize IOSM workspace for a project.
+
+```bash
+iosm init [path] [--force] [--agent-verify|--no-agent-verify]
+```
+
+| Flag | Description |
+|------|-------------|
+| `path` | Target project directory (default: current directory) |
+| `--force` | Re-initialize even if workspace exists |
+| `--agent-verify` | Run post-init agent verification (default) |
+| `--no-agent-verify` | Skip post-init verification |
+
+**Examples:**
+
+```bash
+iosm init                        # Initialize current directory
+iosm init ../backend             # Initialize another project
+iosm init --force                # Force re-initialization
+iosm init --no-agent-verify      # Skip verification step
+```
+
+### `iosm cycle`
+
+IOSM cycle management subcommands.
+
+```bash
+iosm cycle <subcommand>
+```
+
+| Subcommand | Description |
+|------------|-------------|
+| `list` | List all known cycles |
+| `plan [--id <id>] [--force] <goal...>` | Create a new cycle with goals |
+| `report [cycle-id]` | Print cycle report (JSON) |
+| `status [cycle-id]` | Print human-readable gate summary |
+
+**Examples:**
+
+```bash
+iosm cycle list
+iosm cycle plan "reduce latency" "simplify auth"
+iosm cycle plan --id cycle-q1-2026 --force "modernize API"
+iosm cycle report
+iosm cycle report cycle-q1-2026
+iosm cycle status
+```
+
+### `iosm install / remove / update / list`
+
+Package management for extensions, skills, themes.
+
+```bash
+iosm install <source> [-l|--local]
+iosm remove <source> [-l|--local]
+iosm update [source]
+iosm list
+```
+
+**Source formats:**
+
+| Format | Example |
+|--------|---------|
+| npm | `npm:@scope/name@version`, `npm:my-extension` |
+| git | `git:github.com/user/repo@ref`, `https://github.com/user/repo` |
+| local | `./path/to/extension`, `/absolute/path` |
+
+**Examples:**
+
+```bash
+iosm install npm:@my-org/iosm-security-tools
+iosm install git:github.com/user/custom-theme@main
+iosm install ./local-extension -l            # Project-local
+iosm remove npm:@my-org/iosm-security-tools
+iosm update                                   # Update all
+iosm list                                     # List installed
+```
+
+### `iosm config`
+
+View and manage configuration.
+
+```bash
+iosm config
+```
+
+---
+
+## Core Options
+
+### Help & Version
+
+| Flag | Description |
+|------|-------------|
+| `--help`, `-h` | Show help message and exit |
+| `--version`, `-v` | Show version number and exit |
+
+### Output Mode
+
+| Flag | Description |
+|------|-------------|
+| `--mode <text\|json\|rpc>` | Set output/protocol mode |
+| `--print`, `-p` | Non-interactive: run prompt and exit |
+
+**Examples:**
+
+```bash
+# Interactive (default)
+iosm
+
+# One-shot prompt
+iosm -p "Review the codebase"
+
+# JSON event stream for automation
+iosm --mode json "Analyze dependencies"
+
+# JSON-RPC server for IDE integration
+iosm --mode rpc --no-session
+```
+
+### Session Control
+
+| Flag | Description |
+|------|-------------|
+| `--continue`, `-c` | Continue the previous session |
+| `--resume`, `-r` | Open interactive session picker |
+| `--session <path>` | Use a specific session file |
+| `--session-dir <dir>` | Override session storage directory |
+| `--no-session` | Disable persistence for current run |
+
+**Examples:**
+
+```bash
+iosm --continue                              # Continue where you left off
+iosm --resume                                # Pick from recent sessions
+iosm --session ~/sessions/refactor.jsonl     # Specific session file
+iosm --no-session                            # Ephemeral run
+```
+
+---
+
+## Model & Provider Options
+
+| Flag | Description |
+|------|-------------|
+| `--provider <name>` | Select LLM provider |
+| `--model <pattern-or-id>` | Select model |
+| `--api-key <key>` | Runtime-only API key override (not persisted) |
+| `--models <comma-separated>` | Model rotation scope |
+| `--thinking <level>` | Thinking/reasoning level |
+| `--list-models [search]` | List available models |
+
+### `--model` Formats
+
+| Format | Example | Description |
+|--------|---------|-------------|
+| `provider/model-id` | `openai/gpt-4o` | Explicit provider and model |
+| `model-id` | `sonnet` | Model with auto-detected provider |
+| `model-id:thinking` | `sonnet:high` | Model with thinking level |
+
+### `--thinking` Levels
+
+| Level | Description |
+|-------|-------------|
+| `off` | No extended thinking |
+| `minimal` | Minimal reasoning |
+| `low` | Low reasoning effort |
+| `medium` | Moderate reasoning |
+| `high` | High reasoning effort |
+| `xhigh` | Maximum reasoning effort |
+
+**Examples:**
+
+```bash
+iosm --provider openai --model gpt-4o
+iosm --model anthropic/claude-sonnet-4-20250514
+iosm --model sonnet:high
+iosm --thinking medium
+iosm --models "sonnet,gpt-4o,gemini-2.5-pro"
+iosm --list-models                   # All models
+iosm --list-models gemini            # Filter by name
+iosm --api-key sk-test-123           # Override for this run
+```
+
+---
+
+## Prompt & Tool Options
+
+| Flag | Description |
+|------|-------------|
+| `--system-prompt <text>` | Replace the entire system prompt |
+| `--append-system-prompt <text>` | Append text to the system prompt |
+| `--tools <list>` | Specify which built-in tools to enable |
+| `--no-tools` | Disable all built-in tools |
+
+### Available Tools
+
+`read`, `bash`, `edit`, `write`, `grep`, `find`, `ls`
+
+**Examples:**
+
+```bash
+# Full tool access (default)
+iosm
+
+# Read-only analysis
+iosm --tools read,grep,find,ls -p "Audit for dead code"
+
+# No tools
+iosm --no-tools -p "Explain polymorphism"
+
+# Custom system prompt
+iosm --system-prompt "You are a senior Go developer" -p "Review main.go"
+iosm --append-system-prompt "Always respond in Russian"
+```
+
+---
+
+## Extension & Resource Options
+
+| Flag | Description |
+|------|-------------|
+| `--extension`, `-e <path>` | Load extension (repeatable) |
+| `--no-extensions` | Disable all extension auto-discovery |
+| `--skill <path>` | Load skill (repeatable) |
+| `--no-skills` | Disable all skill auto-discovery |
+| `--prompt-template <path>` | Load prompt template (repeatable) |
+| `--no-prompt-templates` | Disable prompt template discovery |
+| `--theme <path>` | Load TUI theme (repeatable) |
+| `--no-themes` | Disable theme auto-discovery |
+
+**Examples:**
+
+```bash
+# Load custom extensions
+iosm -e ./safety-gate.ts -e ./custom-tool.ts
+
+# Load with specific skill
+iosm --skill ./deploy-workflow.md
+
+# Clean mode — no auto-loaded resources
+iosm --no-extensions --no-skills --no-prompt-templates
+```
+
+---
+
+## Runtime Options
+
+| Flag | Description |
+|------|-------------|
+| `--plan` | Read-first planning mode |
+| `--profile <name>` | Select agent profile |
+| `--offline` | Disable startup network operations |
+| `--session-trace` | Enable full JSONL session trace |
+| `--session-trace-dir <dir>` | Override trace directory |
+| `--verbose` | Force verbose startup output |
+
+### Profiles
+
+| Profile | Description |
+|---------|-------------|
+| `full` | Default — all tools, full capabilities |
+| `plan` | Read-only architecture/planning |
+| `iosm` | IOSM artifact context and synchronization |
+| `explore` | Exploratory analysis |
+| `iosm_analyst` | IOSM metric deep-dive |
+| `iosm_verifier` | IOSM verification specialist |
+| `cycle_planner` | Cycle planning specialist |
+
+**Examples:**
+
+```bash
+iosm --profile plan                  # Planning mode
+iosm --profile iosm                  # IOSM mode
+iosm --offline                       # No network
+iosm --session-trace                 # Enable tracing
+iosm --verbose                       # Verbose startup
+```
+
+---
+
+## File Attachments
+
+Prefix arguments with `@` to include file content in the initial user message:
+
+```bash
+iosm @prompt.md @diagram.png "Summarize and propose next steps"
+iosm @src/auth.ts -p "Find security issues in this file"
+iosm @requirements.md @design.md "Compare requirements to design"
+```
+
+---
+
+## Common Workflows
+
+### Code Review
+
+```bash
+iosm --tools read,grep,find,ls -p "Review src/ for code quality issues"
+```
+
+### Refactoring with Planning
+
+```bash
+iosm --profile plan
+# "Analyze the auth module and propose a refactoring plan"
+```
+
+### IOSM Improvement Cycle
+
+```bash
+iosm init
+iosm cycle plan "optimize database queries"
+iosm --profile iosm
+```
+
+### CI Integration
+
+```bash
+iosm --mode json -p "Check for TODO comments" | jq '.text'
+```
+
+### IDE Integration (RPC)
+
+```bash
+iosm --mode rpc --no-session
+# Communicate via stdin/stdout JSON-RPC messages
+```