indexer-cli 0.5.1 → 0.7.1

package/dist/cli/commands/skills.js

@@ -31,74 +31,173 @@ const SKILL_DEFINITIONS = [
     {
         name: "semantic-search",
         directory: "semantic-search",
-        description: `FIRST choice for CONCEPT and BEHAVIOR questions like "how is quiz scoring calculated" or "what happens on subscription cancel". Do NOT use for keyword/identifier lookups — use grep instead. If the search term is also a code identifier (entity name, class name, variable name), this is the WRONG tool.`,
-        heading: "Use semantic-search for implementation hunting",
-        useWhen: "Use this when the agent already knows it needs semantic search results, not a tree or architecture map.",
-        focusHint: "Keep the prompt short and centered on the code concept to find.",
-        allowedTools: ["Bash(npx indexer-cli search:*)"],
-        rules: [
-            `**2-4 domain-specific words**: "how claim prize", "billing webhook", "quiz scoring"`,
-            `Do NOT write long queries with synonyms — it dilutes ranking.`,
-            "Prefer compact JSON fields first; include content only after the right chunk is found.",
-            "Use --path-prefix or --chunk-types when you already know the likely area.",
-        ],
-        skipWhen: [
-            "You need a file tree or symbol inventory instead of search results",
-            "You already know the exact file and line range to inspect",
-        ],
-        commandSamples: [
-            'npx indexer-cli search "<query>"',
-            'npx indexer-cli search "<query>" --path-prefix src/<area>',
-            'npx indexer-cli search "<query>" --chunk-types impl,types',
-        ],
-        cliReference: [
-            "Positional args: <query>.",
-            "Options: --max-files <number>, --path-prefix <string>, --chunk-types <string>, --fields <list>, --min-score <number>, --include-content, --include-imports.",
-            "Allowed --chunk-types values: full_file, imports, preamble, declaration, module_section, impl, types.",
-            "Imports/preamble chunks are excluded by default; use --include-imports to include them.",
-            "Allowed --fields values: filePath, startLine, endLine, score, primarySymbol, content.",
-        ],
+        rawContent: `---
+name: semantic-search
+description:
+  FIRST choice for CONCEPT and BEHAVIOR questions — "how is scoring calculated", "what happens on order cancel", "what if a user stops paying", "how does the system handle expired subscriptions", "lifecycle of a payment", "flow when X fails". Use BEFORE spawning explore agents for these questions — it traces cross-module behavior that grep misses. Do NOT use for keyword/identifier lookups (use grep/ast-grep instead). If the search term is a code identifier (class name, variable name, function name), this is the WRONG tool — use symbol-explain or grep instead.
+allowed-tools: Bash(npx indexer-cli search:*)
+---
+
+# Use semantic-search for implementation hunting
+
+Use when semantic search is already the right tool.
+Keep the query short and centered on one code concept.
+
+## Mandatory rules
+
+### 1) Search count
+
+- 1 search per question
+- Max 2 only if the second is a truly different angle
+- If search 1 answers the question: STOP
+
+Never run 3+ overlapping searches.
+
+### 2) Query shape
+
+Use 1-3 domain-specific words. No synonyms.
+
+Pick the single best concept word. Add words only to narrow scope.
+
+- ✅ \`prize\`
+- ✅ \`password reset\`
+- ✅ \`rate limiting\`
+- ❌ \`prize reward award\`
+- ❌ \`chapter pass percent quiz result score\`
+- ❌ \`order cancel payment failure refund\`
+
+### 3) Two-phase retrieval — ALWAYS
+
+#### Phase 1: Discover
+
+Search without \`--include-content\`.
+
+\`\`\`bash
+npx indexer-cli search "prize"
+\`\`\`
+
+#### Phase 2: Read
+
+Use the Read tool on the exact files and line ranges from Phase 1.
+
+Do NOT:
+
+- run another semantic search for the same concept
+- grep the same concept
+- grep terms revealed by Phase 1
+- replace reading with \`--include-content\`
+
+### Hard stop after Phase 1
+
+If Phase 1 returned useful file paths and ranges, read them.
+
+Only if Phase 1 returns nothing useful, do one fallback:
+
+- one alternative semantic query, or
+- grep
+
+### 4) \`--include-content\` is rare
+
+Use it only for a quick scan when you expect fewer than 5 results.
+
+### 5) Narrow early with \`--path-prefix\`
+
+If you know the subsystem, add \`--path-prefix\`.
+
+\`\`\`bash
+npx indexer-cli search "password reset" --path-prefix src/auth
+\`\`\`
+
+## Skip when
+
+- you need a file tree or symbol inventory
+- you already know the exact file and line range
+- the query is an identifier; use grep/LSP/symbol-explain instead
+
+## Command patterns
+
+\`\`\`bash
+# Phase 1: discover
+npx indexer-cli search "rate limiting"
+npx indexer-cli search "password reset" --path-prefix src/auth
+
+# Phase 2: Read returned files/lines with Read tool
+
+# Rare exception: inline content when expecting <5 hits
+npx indexer-cli search "input validation" --include-content --max-files 3
+\`\`\`
+
+## CLI reference
+
+- Positional args: \`<query>\`
+- Options: \`--max-files\`, \`--path-prefix\`, \`--chunk-types\`, \`--min-score\`, \`--include-content\`,
+  \`--include-imports\`
+
+### Allowed \`--chunk-types\`
+
+\`full_file\`, \`imports\`, \`preamble\`, \`declaration\`, \`module_section\`, \`impl\`, \`types\`
+
+Imports and preamble are excluded by default. Use \`--include-imports\` to include them.
+
+## Anti-patterns
+
+- ❌ 3+ overlapping searches
+- ❌ broad searches with \`--include-content\`
+- ❌ long synonym-heavy queries
+- ❌ re-searching after Phase 1 already found the locations
+- ❌ grepping the same concept after semantic search already found it
+- ❌ loading this skill via \`skill\` when you already know the \`indexer-cli\` command
+`,
+        description: "",
+        heading: "",
+        useWhen: "",
+        allowedTools: [],
+        rules: [],
+        commandSamples: [],
     },
     {
         name: "repo-structure",
         directory: "repo-structure",
-        description: `FIRST choice when you need to see what's inside a package/directory — all files, classes, functions, exports in a tree. Produces a symbol-level map of any path prefix. Use BEFORE opening multiple files to understand layout. Triggers: "show me the structure of X", "what's in this module", "list the symbols".`,
+        description: `FIRST choice when you need to see what's inside a package/directory — all files, classes, functions, exports in a tree. Produces a symbol-level map of any path prefix. Use BEFORE opening multiple files to understand layout. Triggers: "show me the structure of X", "what's in this module", "list the symbols". ALWAYS narrow with --path-prefix or --kind; unfiltered output can exceed 2500 tokens.`,
         heading: "Use repo-structure for tree and symbol-map questions",
         useWhen: "Use this when the agent needs to see how files and symbols are organized in an area of the repo before reading implementation details.",
         focusHint: "Keep the request centered on one repo area or one symbol kind so the tree stays readable.",
         allowedTools: ["Bash(npx indexer-cli structure:*)"],
         rules: [
             "Prefer structure when layout matters more than implementation snippets.",
-            "Use --path-prefix and --kind to keep output focused.",
-            "Use JSON output for agents unless a human explicitly asks for text.",
+            "ALWAYS use --path-prefix or --kind to keep output focused — unfiltered output can exceed 2500 tokens.",
+            "Combine --path-prefix with --kind for the tightest result (e.g. --path-prefix src/engine --kind class).",
+            "By default only exported symbols are shown (classes, exported functions, interfaces, types). Use --include-internal to see private methods and non-exported helpers.",
         ],
         skipWhen: [
             "You need dependency relationships rather than physical structure",
             "You need semantic search results rather than a tree",
         ],
         commandSamples: [
-            "npx indexer-cli structure",
             "npx indexer-cli structure --path-prefix src/<area>",
+            "npx indexer-cli structure --path-prefix src/<area> --kind class",
             "npx indexer-cli structure --kind function",
+            "npx indexer-cli structure --path-prefix src/<area> --include-internal",
         ],
         cliReference: [
-            "Output: JSON by default; use --txt for human-readable text.",
-            "Options: --path-prefix <string>, --kind <string>, --max-depth <number>, --max-files <number>, --txt.",
+            "Options: --path-prefix <string>, --kind <string>, --max-depth <number>, --max-files <number>, --include-internal.",
             "Allowed --kind values: function, class, method, interface, type, variable, module, signal.",
+            "By default shows only exported symbols. Add --include-internal to show all symbols (methods, private members).",
         ],
     },
     {
         name: "repo-architecture",
         directory: "repo-architecture",
-        description: `FIRST choice when user asks "what is this project", "explain the codebase", "how is this organized". Produces a full dependency graph, entry points, and module breakdown — everything needed to understand a repo without reading individual files. Use BEFORE reading package.json or exploring directories manually.`,
+        description: `FIRST choice when user asks "what is this project", "explain the codebase", "how is this organized". Produces a full dependency graph, entry points, and module breakdown — everything needed to understand a repo without reading individual files. Use BEFORE reading package.json or exploring directories manually. Also the best starting point for onboarding: run this first, then drill into specific modules with deps or explain.`,
         heading: "Use repo-architecture for dependency-graph questions",
-        useWhen: "Use this when the agent needs a high-level snapshot of modules, entry points, and dependency shape before going deeper.",
+        useWhen: "Use this when the agent needs a high-level snapshot of modules, entry points, and dependency shape before going deeper. This is the cheapest way to orient in an unfamiliar codebase (~140 tokens for a typical project).",
         focusHint: "Keep the scope to the subsystem that matters so the graph highlights the right boundaries.",
         allowedTools: ["Bash(npx indexer-cli architecture:*)"],
         rules: [
             "Use architecture when the question is about system shape, not a single symbol.",
             "Filter by path prefix when only one subsystem matters.",
-            "Use JSON output to preserve structured dependency data.",
+            "Pay attention to cyclic dependencies — they indicate tight coupling that may affect where you make changes.",
+            "Follow up with `deps <hot-path>` to drill into specific module relationships, or `explain <symbol>` to understand a key class.",
         ],
         skipWhen: [
             "You need callers/callees for one specific file or symbol",
@@ -108,51 +207,55 @@ const SKILL_DEFINITIONS = [
             "npx indexer-cli architecture",
             "npx indexer-cli architecture --path-prefix src/<area>",
         ],
-        cliReference: [
-            "Output: JSON by default; use --txt for human-readable text.",
-            "Options: --path-prefix <string>, --include-fixtures, --txt.",
-        ],
+        cliReference: ["Options: --path-prefix <string>, --include-fixtures."],
     },
     {
         name: "repo-context",
         directory: "repo-context",
-        description: "FIRST choice for changed-area and subsystem summaries. Load this before opening many files when you need whole-repo orientation, changed-scope context, or a dependency-neighborhood snapshot without exact implementation snippets.",
+        description: "FIRST choice for changed-area and subsystem summaries. Load this before opening many files when you need whole-repo orientation, changed-scope context, or a dependency-neighborhood snapshot without exact implementation snippets. ALWAYS pass --scope; without it the output can exceed 5000 tokens.",
         heading: "Use repo-context for dense summaries",
         useWhen: "Use this when the agent wants a compressed view of a subsystem, changed area, or dependency neighborhood without opening many files.",
         focusHint: "Keep the scope explicit so the summary stays dense instead of drifting across the repo.",
         allowedTools: ["Bash(npx indexer-cli context:*)"],
         rules: [
             "Prefer context when you want breadth over exact source snippets.",
-            "Use --scope to target all, changed, or relevant-to:<path>.",
+            "ALWAYS use --scope — default `--scope all` outputs every symbol in the repo. Use --scope relevant-to:<path> for a focused neighborhood or --scope changed for uncommitted changes.",
+            "Use --compact to omit symbol signatures and show only file::name (kind) — saves ~50% tokens.",
             "Lower --max-deps when you need a tighter prompt budget.",
+            "Tests are excluded by default. Add --include-tests to see test files and symbols.",
         ],
         skipWhen: [
             "You need exact implementation locations or ranked chunks",
             "You need a file tree or architecture graph instead of a summary",
         ],
         commandSamples: [
-            "npx indexer-cli context",
-            "npx indexer-cli context --scope changed",
             "npx indexer-cli context --scope relevant-to:src/<area>",
+            "npx indexer-cli context --scope changed",
+            "npx indexer-cli context --scope relevant-to:src/<area> --max-deps 10 --compact",
+            "npx indexer-cli context --scope relevant-to:src --compact",
         ],
         cliReference: [
-            "Output: JSON by default; use --txt for human-readable text.",
-            "Options: --scope <scope>, --max-deps <number>, --include-fixtures, --txt.",
+            "Options: --scope <scope>, --max-deps <number>, --include-fixtures, --include-tests, --compact.",
             "Allowed --scope values: all, changed, relevant-to:<path>.",
+            "--compact omits symbol signatures for token savings. --include-tests includes test files.",
         ],
     },
     {
         name: "symbol-explain",
         directory: "symbol-explain",
-        description: "FIRST choice once the symbol name is known. Load this before manual caller/signature tracing to get one symbol's signature, module context, and callers fast.",
+        description: "FIRST choice once the symbol name is known. Load this before manual caller/signature tracing to get one symbol's signature, module context, and callers fast. Output is ~80 tokens — the cheapest way to understand a single symbol.",
         heading: "Use symbol-explain for one symbol at a time",
         useWhen: "Use this when the task centers on one function, class, type, or symbol and the agent needs signature, usage, and containing module context fast.",
         focusHint: "Keep the request centered on one symbol name for the cleanest caller and signature output.",
         allowedTools: ["Bash(npx indexer-cli explain:*)"],
         rules: [
             "Use explain only when the symbol name is already known.",
-            "Do not use this skill for symbol discovery; use it only once the symbol name is already known.",
+            "Use <file>::<symbol> syntax when the same symbol name exists in multiple files (e.g. `explain src/engine/indexer.ts::IndexerEngine`).",
+            "Use bare <symbol> when the name is unique in the codebase.",
             "Keep the prompt centered on a single symbol for the cleanest output.",
+            "Use --path-prefix to limit results to files under a specific path (e.g. --path-prefix src/).",
+            "Tests and fixtures are excluded by default. Add --include-fixtures to include them.",
+            "Exact name matches take priority; fuzzy matches only appear when no exact match exists.",
         ],
         skipWhen: [
             "You need to discover candidate symbols first",
@@ -161,17 +264,18 @@ const SKILL_DEFINITIONS = [
         commandSamples: [
             "npx indexer-cli explain <symbol>",
             "npx indexer-cli explain <file>::<symbol>",
+            "npx indexer-cli explain <symbol> --path-prefix src/",
         ],
         cliReference: [
             "Positional args: <symbol> or <file>::<symbol>.",
-            "Output: JSON by default; use --txt for human-readable text.",
-            "Options: --txt.",
+            "Options: --path-prefix <string>, --include-fixtures.",
+            "Tests/fixtures excluded by default. Exact matches prioritized over fuzzy matches.",
         ],
     },
     {
         name: "dependency-trace",
         directory: "dependency-trace",
-        description: "FIRST choice once the file or module is known and impact matters. Load this before manual import tracing to see callers, callees, and likely change impact.",
+        description: "FIRST choice once the file or module is known and impact matters. Load this before manual import tracing to see callers, callees, and likely change impact. Output is ~140 tokens per depth level.",
         heading: "Use dependency-trace for impact analysis",
         useWhen: "Use this when the agent needs to know who imports a module, what it imports, or how far change impact may spread.",
         focusHint: "Start with a single path or module and keep depth low until the first-hop trace stops being enough.",
@@ -179,7 +283,7 @@ const SKILL_DEFINITIONS = [
         rules: [
             "Use deps when the question is about relationships, not source snippets.",
             "Set --direction callers or --direction callees when only one side matters.",
-            "Increase depth only when the first hop is not enough.",
+            "Start at depth 1 (default). Increase to --depth 2 only when the first hop is not enough — each depth level adds more callers/callees.",
         ],
         skipWhen: [
             "You need a repo-wide architecture snapshot rather than one trace",
@@ -189,11 +293,11 @@ const SKILL_DEFINITIONS = [
             "npx indexer-cli deps <path>",
             "npx indexer-cli deps <path> --direction callers",
             "npx indexer-cli deps <path> --direction callees",
+            "npx indexer-cli deps <path> --depth 2",
         ],
         cliReference: [
             "Positional args: <path>.",
-            "Output: JSON by default; use --txt for human-readable text.",
-            "Options: --direction <dir>, --depth <n>, --txt.",
+            "Options: --direction <dir>, --depth <n>.",
             "Allowed --direction values: callers, callees, both.",
             "Behavior: --depth is effectively clamped to the range 1..5.",
         ],
@@ -202,7 +306,7 @@ const SKILL_DEFINITIONS = [
 exports.GENERATED_SKILLS = SKILL_DEFINITIONS.map((definition) => ({
     name: definition.name,
     directory: definition.directory,
-    content: renderSkill(definition),
+    content: definition.rawContent ?? renderSkill(definition),
 }));
 exports.DEPRECATED_SKILL_DIRECTORIES = ["context-pack"];
 exports.GENERATED_SKILL_DIRECTORIES = exports.GENERATED_SKILLS.map((skill) => skill.directory);

package/dist/cli/commands/skills.js.map

@@ -1 +1 @@
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package/dist/cli/commands/structure.js

@@ -10,7 +10,6 @@ const logger_js_1 = require("../../core/logger.js");
 const types_js_1 = require("../../core/types.js");
 const sqlite_js_1 = require("../../storage/sqlite.js");
 const help_text_js_1 = require("../help-text.js");
-const output_mode_js_1 = require("../output-mode.js");
 const ensure_indexed_js_1 = require("./ensure-indexed.js");
 function parseMaxDepth(value) {
     if (!value) {
@@ -94,7 +93,12 @@ function collectDescendantFiles(node, prefix, symbolsByFile, fileCounter, maxFil
     }
     return entries;
 }
-function printTree(node, indent, prefix, symbolsByFile, depth, maxDepth, fileCounter, maxFiles) {
+const NO_SYMBOLS_EXPORTED_ONLY = "(no exported symbols)";
+const NO_SYMBOLS_ALL = "(no symbols)";
+function printTree(node, indent, prefix, symbolsByFile, depth, maxDepth, fileCounter, maxFiles, includeInternal) {
+    const noSymbolsText = includeInternal
+        ? NO_SYMBOLS_ALL
+        : NO_SYMBOLS_EXPORTED_ONLY;
     if (maxDepth !== undefined && depth >= maxDepth) {
         if (node.files.size > 0) {
             const summary = summarizeHiddenChildren(node);
@@ -110,7 +114,7 @@ function printTree(node, indent, prefix, symbolsByFile, depth, maxDepth, fileCou
                 console.log(`${indent}  ${symbol.name} (${symbol.kind}${exported})`);
             }
             if (file.symbols.length === 0) {
-                console.log(`${indent}  (no symbols)`);
+                console.log(`${indent}  ${noSymbolsText}`);
             }
         }
         return;
@@ -126,7 +130,7 @@ function printTree(node, indent, prefix, symbolsByFile, depth, maxDepth, fileCou
         }
         const nextPrefix = prefix ? `${prefix}/${directoryName}` : directoryName;
         console.log(`${indent}${directoryName}/`);
-        printTree(childNode, `${indent}  `, nextPrefix, symbolsByFile, depth + 1, maxDepth, fileCounter, maxFiles);
+        printTree(childNode, `${indent}  `, nextPrefix, symbolsByFile, depth + 1, maxDepth, fileCounter, maxFiles, includeInternal);
     }
     for (const fileName of fileEntries) {
         if (maxFiles !== undefined &&
@@ -148,97 +152,10 @@ function printTree(node, indent, prefix, symbolsByFile, depth, maxDepth, fileCou
             }
         }
         else {
-            console.log(`${indent}  (no symbols)`);
+            console.log(`${indent}  ${noSymbolsText}`);
         }
     }
 }
-function treeToJson(node, prefix, symbolsByFile, depth, maxDepth, fileCounter, maxFiles) {
-    if (maxDepth !== undefined && depth >= maxDepth) {
-        if (node.files.size > 0) {
-            const summary = summarizeHiddenChildren(node);
-            return summary === "... (0 children)"
-                ? []
-                : [{ type: "summary", name: summary }];
-        }
-        return collectDescendantFiles(node, prefix, symbolsByFile, fileCounter, maxFiles).map((file) => ({
-            type: "file",
-            name: file.name,
-            path: file.path,
-            symbols: file.symbols,
-        }));
-    }
-    const entries = [];
-    const directoryEntries = Array.from(node.directories.entries()).sort((a, b) => a[0].localeCompare(b[0]));
-    const fileEntries = Array.from(node.files).sort((a, b) => a.localeCompare(b));
-    for (const [directoryName, childNode] of directoryEntries) {
-        if (maxFiles !== undefined &&
-            fileCounter &&
-            fileCounter.printed >= maxFiles) {
-            fileCounter.hidden += countFiles(childNode);
-            continue;
-        }
-        const childPrefix = prefix ? `${prefix}/${directoryName}` : directoryName;
-        const children = treeToJson(childNode, childPrefix, symbolsByFile, depth + 1, maxDepth, fileCounter, maxFiles);
-        if (maxFiles !== undefined && children.length === 0) {
-            continue;
-        }
-        entries.push({
-            type: "directory",
-            name: directoryName,
-            children,
-        });
-    }
-    for (const fileName of fileEntries) {
-        if (maxFiles !== undefined &&
-            fileCounter &&
-            fileCounter.printed >= maxFiles) {
-            fileCounter.hidden += 1;
-            continue;
-        }
-        const filePath = prefix ? `${prefix}/${fileName}` : fileName;
-        const symbols = (symbolsByFile.get(filePath) ?? []).map((s) => ({
-            name: s.name,
-            kind: s.kind,
-            exported: s.exported,
-        }));
-        if (fileCounter) {
-            fileCounter.printed += 1;
-        }
-        entries.push({ type: "file", name: fileName, path: filePath, symbols });
-    }
-    return entries;
-}
-function narrowJsonTreeToPathPrefix(entries, pathPrefix) {
-    if (!pathPrefix) {
-        return entries;
-    }
-    const parts = pathPrefix.split("/").filter(Boolean);
-    let current = entries;
-    for (let index = 0; index < parts.length; index += 1) {
-        const part = parts[index];
-        const file = current.find((entry) => typeof entry === "object" &&
-            entry !== null &&
-            "type" in entry &&
-            "name" in entry &&
-            "path" in entry &&
-            entry.type === "file" &&
-            entry.name === part);
-        if (file) {
-            return index === parts.length - 1 ? [file] : [];
-        }
-        const dir = current.find((entry) => typeof entry === "object" &&
-            entry !== null &&
-            "type" in entry &&
-            "name" in entry &&
-            entry.type === "directory" &&
-            entry.name === part);
-        if (!dir) {
-            return [];
-        }
-        current = dir.children ?? [];
-    }
-    return current;
-}
 function registerStructureCommand(program) {
     program
         .command("structure")
@@ -248,12 +165,11 @@ function registerStructureCommand(program) {
         .option("--kind <string>", "filter symbols by kind")
         .option("--max-depth <number>", "limit directory traversal depth in the rendered tree")
         .option("--max-files <number>", "limit number of files shown in output")
-        .option("--txt", "output results as human-readable text")
+        .option("--include-internal", "include non-exported symbols (methods, private members)")
         .action(async (options) => {
         const resolvedProjectPath = process.cwd();
         const dataDir = node_path_1.default.join(resolvedProjectPath, ".indexer-cli");
         const dbPath = node_path_1.default.join(dataDir, "db.sqlite");
-        const isJson = (0, output_mode_js_1.isJsonOutput)(options);
         (0, logger_js_1.initLogger)(dataDir);
         config_js_1.config.load(dataDir);
         const metadata = new sqlite_js_1.SqliteMetadataStore(dbPath);
@@ -263,7 +179,7 @@ function registerStructureCommand(program) {
             const fileCounter = maxFiles !== undefined ? { printed: 0, hidden: 0 } : undefined;
             await metadata.initialize();
             await (0, ensure_indexed_js_1.ensureIndexed)(metadata, resolvedProjectPath, {
-                silent: isJson,
+                silent: false,
             });
             const snapshot = await metadata.getLatestCompletedSnapshot(types_js_1.DEFAULT_PROJECT_ID);
             if (!snapshot) {
@@ -282,46 +198,29 @@ function registerStructureCommand(program) {
                     !symbol.filePath.startsWith(options.pathPrefix)) {
                     continue;
                 }
+                if (!options?.includeInternal && !symbol.exported) {
+                    continue;
+                }
                 const current = symbolsByFile.get(symbol.filePath) ?? [];
                 current.push(symbol);
                 symbolsByFile.set(symbol.filePath, current);
             }
             if (files.length === 0) {
-                if (isJson) {
-                    console.log("[]");
-                }
-                else {
-                    console.log("No indexed files found for the requested filters.");
-                }
+                console.log("No indexed files found for the requested filters.");
                 return;
             }
             const root = createNode();
             for (const file of files) {
                 insertPath(root, file.path);
             }
-            if (isJson) {
-                let tree = treeToJson(root, "", symbolsByFile, 0, maxDepth, fileCounter, maxFiles);
-                tree = narrowJsonTreeToPathPrefix(tree, options?.pathPrefix);
-                if (fileCounter && fileCounter.hidden > 0) {
-                    tree.push({ type: "truncated", hiddenFiles: fileCounter.hidden });
-                }
-                console.log(JSON.stringify(tree, null, 2));
-            }
-            else {
-                printTree(root, "", "", symbolsByFile, 0, maxDepth, fileCounter, maxFiles);
-                if (fileCounter && fileCounter.hidden > 0) {
-                    console.log(`\n... and ${fileCounter.hidden} more files (use --max-files to see more)`);
-                }
+            printTree(root, "", "", symbolsByFile, 0, maxDepth, fileCounter, maxFiles, options?.includeInternal);
+            if (fileCounter && fileCounter.hidden > 0) {
+                console.log(`\n... and ${fileCounter.hidden} more files (use --max-files to see more)`);
             }
         }
         catch (error) {
             const message = error instanceof Error ? error.message : String(error);
-            if (isJson) {
-                console.error(JSON.stringify({ error: message }, null, 2));
-            }
-            else {
-                console.error(`Structure command failed: ${message}`);
-            }
+            console.error(`Structure command failed: ${message}`);
             process.exitCode = 1;
         }
         finally {

package/dist/cli/commands/structure.js.map

@@ -1 +1 @@
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