imerss-bioinfo 1.8.0 → 1.10.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (55) hide show
  1. package/docs/css/imerss-viz-all.css +16 -3
  2. package/docs/css/xetthecum.css +10 -1
  3. package/docs/js/imerss-viz-all.js +1 -1
  4. package/docs/js/imerss-viz-all.js.map +1 -1
  5. package/index.html +3 -3
  6. package/indexBeas.html +141 -0
  7. package/indexWithMapHoweSoundScrolly.html +1 -1
  8. package/indexWithMapXetthecum.html +2 -1
  9. package/package.json +3 -1
  10. package/src/Wikipedia/wikipedia.js +48 -0
  11. package/src/assignBNames.js +175 -0
  12. package/src/assignNames.js +107 -16
  13. package/src/buildSource/Galiano Life List.html +1 -1
  14. package/src/buildSource/Xetthecum.html +3 -1
  15. package/src/buildSource/index.html +94 -81
  16. package/src/client/css/imerss-bbea.css +101 -0
  17. package/src/client/css/imerss-core.css +287 -0
  18. package/src/client/css/imerss-viz.css +16 -3
  19. package/src/client/css/xetthecum.css +10 -1
  20. package/src/client/img/Xetthecum/Imush_Quyatlun.jpg +0 -0
  21. package/src/client/img/thumbs/Galiano-Marine-Atlas.jpg +0 -0
  22. package/src/client/js/autocomplete.js +1 -1
  23. package/src/client/js/checklist.js +19 -27
  24. package/src/client/js/colour.js +33 -14
  25. package/src/client/js/imerss-viz.js +324 -116
  26. package/src/client/js/leafletMapWithGrid.js +1 -15
  27. package/src/client/js/leafletMapWithRegions.js +28 -12
  28. package/src/client/js/new/imerss-new.js +877 -0
  29. package/src/client/js/new/newChecklist.js +159 -0
  30. package/src/client/js/xetthecum.js +5 -0
  31. package/src/dataProcessing/readCSVFast.js +50 -0
  32. package/src/dataProcessing/readCSVwithMap.js +1 -1
  33. package/src/dataProcessing/sqlite.js +7 -2
  34. package/src/dataProcessing/writeCSV.js +10 -9
  35. package/src/dbtaxa.js +2 -0
  36. package/src/descrolly.js +5 -4
  37. package/src/findGeoBeas.js +77 -0
  38. package/src/iNaturalist/examples/api.inaturalist.org-v1-taxa-51147.json5 +3258 -0
  39. package/src/iNaturalist/examples/api.inaturalist.org-v1-taxa-autocomplete!q=Crataegus monogyna monogyna.json5 +399 -0
  40. package/src/iNaturalist/examples/api.inaturalist.org-v1-taxa-autocomplete!q=Diplotaxis.json5 +519 -0
  41. package/src/iNaturalist/examples/api.inaturalist.org-v1-taxa-autocomplete!q=Symphyotrichum douglasii.json5 +66 -0
  42. package/src/iNaturalist/examples/en.wikipedia.org-w-api.php!action=query&exchars=1200&prop=extracts&redirects&format=json&titles=Plantae.json5 +27 -0
  43. package/src/iNaturalist/iNatUrls.js +5 -0
  44. package/src/iNaturalist/obsAPI.js +12 -7
  45. package/src/iNaturalist/taxonAPI.js +169 -43
  46. package/src/inatObs.js +60 -5
  47. package/src/marmalise.js +68 -24
  48. package/src/materialise.js +14 -14
  49. package/src/reintegrate.js +3 -0
  50. package/src/taxonomise.js +38 -7
  51. package/src/xetthecum/xetthecumFilters.js +18 -18
  52. package/test/getiNatDoc.js +25 -0
  53. package/test/testiNatDisambig.js +34 -0
  54. package/test/testiNatSource.js +4 -1
  55. package/test/updateWikiScrape.js +47 -0
package/docs/css/imerss-viz-all.css CHANGED
@@ -820,10 +820,20 @@ a.ui-button:active,
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  margin-bottom: -0.2rem;
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  }
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+ /* No idea why we do this, but we need to undo it for fld-imerss-media-name */
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  .fl-taxonDisplay-row.fld-taxonDisplay-expandable-remainder.fl-taxonDisplay-runon-remainder :first-child {
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  margin-top: -0.5rem;
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  }
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+ .fl-taxonDisplay-row.fld-taxonDisplay-expandable-remainder.fl-taxonDisplay-runon-remainder .fld-imerss-media-name {
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+ padding-bottom: 15px;
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+ font-size: 1.1rem;
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+ }
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+
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+ .fl-taxonDisplay-row .fld-imerss-media-image {
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+ padding-bottom: 5px;
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+ }
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+
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  .fl-taxonDisplay-row.fld-taxonDisplay-expandable-remainder.fl-taxonDisplay-runon-remainder.fl-taxonDisplay-row {
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  border-bottom: none;
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  }
@@ -867,16 +877,19 @@ a.ui-button:active,
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  filter: invert(57%) sepia(0%) saturate(6%) hue-rotate(187deg) brightness(94%) contrast(88%);
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  }
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- .fl-taxonDisplay-unexpanded {
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+ .fl-taxonDisplay-unexpanded .fl-taxonDisplay-expand {
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  background-image: url("../img/Arrow-down.svg");
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  }
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- .fl-taxonDisplay-expanded {
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+ .fl-taxonDisplay-expanded .fl-taxonDisplay-expand {
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  background-image: url("../img/Arrow-up.svg");
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  }
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+ .fl-taxonDisplay-runon-remainder.fl-taxonDisplay-unexpanded {
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+ display: none
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+ }
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+
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  .fld-taxonDisplay-expandable-remainder {
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- display: none;
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  padding-left: 20px;
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  }
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package/docs/css/xetthecum.css CHANGED
@@ -396,7 +396,7 @@ body {
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  border-bottom: none;
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  }
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- /** Undo this insane rule from imerss-viz.css - this whole system needs to be rewritten **/
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+ /** Undo this insane rule from imerss-viz-scrolly.css - this whole system needs to be rewritten **/
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  .fl-taxonDisplay-row.fld-taxonDisplay-expandable-remainder.fl-taxonDisplay-runon-remainder.fl-taxonDisplay-row {
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  border-bottom: #888 1px solid;
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  }
@@ -507,6 +507,15 @@ body {
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  width: auto;
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  }
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+ .fld-imerss-media-image img {
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+ width: 100%
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+ }
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+
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+ .fld-imerss-media-name {
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+ padding-bottom: 5px;
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+ font-size: 1.2rem;
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+ }
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+
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  /*
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  on .ui-tabs .ui-tabs-nav li.ui-tabs-active
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  will move it down so that it can overwrite border