image-js 1.5.0 → 1.6.0

package/lib/roi/Roi.js

@@ -2,6 +2,7 @@ import { getConvexHull } from '../maskAnalysis/getConvexHull.js';
 import { getFeret } from '../maskAnalysis/getFeret.js';
 import { getMbr } from '../maskAnalysis/getMbr.js';
 import { getBorderPoints } from './getBorderPoints.js';
+import { getExternalContour } from "./getExternalContour.js";
 import { getMask } from './getMask.js';
 import { getEllipse } from './properties/getEllipse.js';
 export class Roi {
@@ -83,6 +84,14 @@ export class Roi {
     getBorderPoints(options) {
         return getBorderPoints(this, options);
     }
+    /**
+     * Finds external contour of the roi from its mask.
+     * @param options - GetExternalContourOptions.
+     * @returns Array of contour points.
+     */
+    getExternalContour(options) {
+        return getExternalContour(this, options);
+    }
     /**
      * Returns an array of ROIs IDs that are included in the current ROI.
      * This will be useful to know if there are some holes in the ROI.

package/lib/roi/Roi.js.map

@@ -1 +1 @@
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package/lib/roi/getExternalContour.d.ts

@@ -0,0 +1,10 @@
+import type { GetExternalContourOptions } from '../maskAnalysis/getExternalContour.ts';
+import type { Roi } from './Roi.ts';
+/**
+ * Finds external contour of the roi from its mask.
+ * @param roi - roi to find contour from.
+ * @param options - GetExternalContourOptions.
+ * @returns Array of contour points.
+ */
+export declare function getExternalContour(roi: Roi, options?: GetExternalContourOptions): import("../index_full.ts").Point[];
+//# sourceMappingURL=getExternalContour.d.ts.map

package/lib/roi/getExternalContour.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"getExternalContour.d.ts","sourceRoot":"","sources":["../../src/roi/getExternalContour.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,uCAAuC,CAAC;AAEvF,OAAO,KAAK,EAAE,GAAG,EAAE,MAAM,UAAU,CAAC;AAEpC;;;;;GAKG;AACH,wBAAgB,kBAAkB,CAChC,GAAG,EAAE,GAAG,EACR,OAAO,CAAC,EAAE,yBAAyB,sCAIpC"}

package/lib/roi/getExternalContour.js

@@ -0,0 +1,11 @@
+/**
+ * Finds external contour of the roi from its mask.
+ * @param roi - roi to find contour from.
+ * @param options - GetExternalContourOptions.
+ * @returns Array of contour points.
+ */
+export function getExternalContour(roi, options) {
+    const mask = roi.getMask();
+    return mask.getExternalContour(options);
+}
+//# sourceMappingURL=getExternalContour.js.map

package/lib/roi/getExternalContour.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"getExternalContour.js","sourceRoot":"","sources":["../../src/roi/getExternalContour.ts"],"names":[],"mappings":"AAIA;;;;;GAKG;AACH,MAAM,UAAU,kBAAkB,CAChC,GAAQ,EACR,OAAmC;IAEnC,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,EAAE,CAAC;IAC3B,OAAO,IAAI,CAAC,kBAAkB,CAAC,OAAO,CAAC,CAAC;AAC1C,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "image-js",
-  "version": "1.5.0",
+  "version": "1.6.0",
   "license": "MIT",
   "description": "Image processing and manipulation in JavaScript",
   "author": "Michaël Zasso",

package/src/Mask.ts

@@ -19,6 +19,8 @@ import type { AndOptions, InvertOptions, OrOptions } from './filters/index.js';
 import { and, invert, or } from './filters/index.js';
 import { getBorderPoints } from './maskAnalysis/getBorderPoints.js';
 import { getConvexHull } from './maskAnalysis/getConvexHull.js';
+import type { GetExternalContourOptions } from './maskAnalysis/getExternalContour.ts';
+import { getExternalContour } from './maskAnalysis/getExternalContour.ts';
 import { getFeret } from './maskAnalysis/getFeret.js';
 import { getMbr } from './maskAnalysis/getMbr.js';
 import type {
@@ -503,6 +505,16 @@ export class Mask {
     return getBorderPoints(this, options);
   }
 
+  /**
+   * Returns external contour of the mask. Unlike border points, returned points
+   * follow the shape of the mask.
+   * @param options - Get external contour options.
+   * @returns Array of contour points.
+   */
+  public getExternalContour(options?: GetExternalContourOptions) {
+    return getExternalContour(this, options);
+  }
+
   /**
    * Get the vertices of the convex Hull polygon of a mask.
    * @returns Array of the vertices of the convex Hull in clockwise order.

package/src/maskAnalysis/getContourMoore.ts

@@ -0,0 +1,143 @@
+import assert from 'node:assert';
+
+import type { Mask } from '../Mask.ts';
+import type { Point } from '../utils/geometry/points.ts';
+
+import {
+  getBitSafe,
+  getCoordsFromIndex,
+} from './utils/getExternalContourUtils.ts';
+
+interface Direction {
+  /**
+   * Horizontal direction change.
+   */
+  dc: number;
+  /**
+   * Vertical direction change.
+   */
+  dr: number;
+}
+/**
+ * Possible directions.
+ */
+const directions: Direction[] = [
+  { dc: -1, dr: 0 }, // left
+  { dc: -1, dr: -1 }, // up-left
+  { dc: 0, dr: -1 }, // up
+  { dc: 1, dr: -1 }, // up-right
+  { dc: 1, dr: 0 }, // right
+  { dc: 1, dr: 1 }, // down-right
+  { dc: 0, dr: 1 }, // down
+  { dc: -1, dr: 1 }, // down-left
+];
+// Lookup table for directions' index.
+const directionIndexLookup = new Int8Array(9).fill(-1);
+for (let i = 0; i < directions.length; i++) {
+  const { dc, dr } = directions[i];
+  directionIndexLookup[(dr + 1) * 3 + (dc + 1)] = i;
+}
+/**
+ * Return an array with the coordinates of the pixels that are on the border of the mask using Moore's tracing algorithm.
+ * The reference is the top-left corner of the ROI.
+ * @param mask - Mask to process.
+ * @returns The array of border pixels.
+ */
+export function getContourMoore(mask: Mask): Point[] {
+  let index = 0;
+
+  const contour: Point[] = [];
+  const visited = new Uint8Array(mask.width * mask.height);
+  while (mask.getBitByIndex(index) !== 1 && index !== mask.size) {
+    index++;
+  }
+
+  if (index === mask.size) return contour;
+  const [row, col] = getCoordsFromIndex(index, mask.width);
+  const startingPoint = { column: col, row };
+  let currentPoint = startingPoint;
+
+  visited[index] = 1;
+  contour.push(currentPoint);
+
+  const firstNext = findNextPoint(mask, currentPoint, { column: col - 1, row });
+  if (!firstNext) {
+    return contour;
+  }
+
+  let startingBacktrackPoint: Point = firstNext.prevPoint;
+
+  let backtrackPoint = firstNext.prevPoint;
+  currentPoint = firstNext.currPoint;
+
+  while (true) {
+    index = currentPoint.row * mask.width + currentPoint.column;
+    if (!visited[index]) {
+      visited[index] = 1;
+      contour.push(currentPoint);
+    }
+
+    const next = findNextPoint(mask, currentPoint, backtrackPoint);
+    assert.ok(next, 'Next border point is undefined.');
+    backtrackPoint = next.prevPoint;
+    currentPoint = next.currPoint;
+    if (
+      currentPoint.column === startingPoint.column &&
+      currentPoint.row === startingPoint.row
+    ) {
+      if (
+        backtrackPoint.column === startingBacktrackPoint.column &&
+        backtrackPoint.row === startingBacktrackPoint.row
+      ) {
+        break;
+      } else {
+        startingBacktrackPoint = backtrackPoint;
+      }
+    }
+  }
+
+  return contour;
+}
+/**
+ * Finds next point to trace.
+ * @param mask - Mask in check.
+ * @param current - Current border point.
+ * @param previous - Last non-border point to start search from.
+ * @returns Object with new border point and last non-border point.
+ */
+function findNextPoint(
+  mask: Mask,
+  current: Point,
+  previous: Point,
+): { prevPoint: Point; currPoint: Point } | undefined {
+  let prevPoint = previous;
+
+  // Vector from current back to previous
+  const backDc = previous.column - current.column;
+  const backDr = previous.row - current.row;
+
+  const startIndex = directionIndexLookup[(backDr + 1) * 3 + (backDc + 1)];
+
+  // Scan clockwise starting from that index.
+  for (let i = 0; i < directions.length; i++) {
+    const { dc, dr } = directions.at(
+      (startIndex + i) % directions.length,
+    ) as Direction;
+    const newCol = current.column + dc;
+    const newRow = current.row + dr;
+    if (getBitSafe(mask, newCol, newRow) === 1) {
+      // Stores found border point and last non-border point that
+      // was found. Will be used as a starting point in the next
+      // iteration.
+      return {
+        prevPoint,
+        currPoint: { column: newCol, row: newRow },
+      };
+    } else {
+      prevPoint = { column: newCol, row: newRow };
+    }
+  }
+  // Is triggered only if the point has no neighbours. So it is undefined
+  // only if mask is made of one pixel.
+  return undefined;
+}

package/src/maskAnalysis/getContourPavlidis.ts

@@ -0,0 +1,102 @@
+import type { Mask } from '../Mask.ts';
+import type { Point } from '../utils/geometry/points.ts';
+
+import {
+  getBitSafe,
+  getCoordsFromIndex,
+} from './utils/getExternalContourUtils.ts';
+
+type Direction = 0 | 1 | 2 | 3; // N, E, S, W
+
+const DR = [-1, 0, 1, 0];
+const DC = [0, 1, 0, -1];
+
+function turnLeft(d: Direction): Direction {
+  return ((d + 3) % 4) as Direction;
+}
+
+function turnRight(d: Direction): Direction {
+  return ((d + 1) % 4) as Direction;
+}
+
+/**
+ * Return an array with the coordinates of the pixels that are on the
+ * external border of the mask using Theo Pavlidis's tracing algorithm.
+ * The reference is the top-left corner of the ROI.
+ * @param mask - Mask to process.
+ * @returns The array of external border pixels.
+ */
+export function getContourPavlidis(mask: Mask): Point[] {
+  let index = 0;
+  while (index < mask.size && mask.getBitByIndex(index) !== 1) {
+    index++;
+  }
+  if (index === mask.size) return [];
+  const [row, col] = getCoordsFromIndex(index, mask.width);
+
+  return traceFrom(mask, col, row);
+}
+
+/**
+ * Traces contour using Pavlidis algorithm.
+ * @param mask - Mask in check.
+ * @param startCol - Starting column.
+ * @param startRow - Starting row.
+ * @returns Array of contour points.
+ */
+function traceFrom(mask: Mask, startCol: number, startRow: number): Point[] {
+  let row = startRow;
+  let column = startCol;
+  let dir: Direction = 2;
+  let inPlaceTurns = 0;
+  const seen = new Uint8Array(mask.width * mask.height);
+  const contour: Point[] = [];
+  let visits = 0;
+  while (true) {
+    const idx = row * mask.width + column;
+    if (!seen[idx]) {
+      seen[idx] = 1;
+      contour.push({ row, column });
+    } else if (row === startRow && column === startCol) {
+      if (visits === 2) {
+        break;
+      } else {
+        visits++;
+      }
+    }
+
+    const left = turnLeft(dir);
+    const right = turnRight(dir);
+
+    const c1r = row + DR[left];
+    const c1c = column + DC[left];
+
+    const c2r = row + DR[dir];
+    const c2c = column + DC[dir];
+
+    const c3r = row + DR[right];
+    const c3c = column + DC[right];
+
+    if (getBitSafe(mask, c1c, c1r) === 1) {
+      dir = left;
+      row = c1r;
+      column = c1c;
+      inPlaceTurns = 0;
+    } else if (getBitSafe(mask, c2c, c2r) === 1) {
+      row = c2r;
+      column = c2c;
+      inPlaceTurns = 0;
+    } else if (getBitSafe(mask, c3c, c3r) === 1) {
+      dir = right;
+      row = c3r;
+      column = c3c;
+      inPlaceTurns = 0;
+    } else {
+      dir = right;
+      inPlaceTurns++;
+      if (inPlaceTurns >= 4) break;
+    }
+  }
+
+  return contour;
+}

package/src/maskAnalysis/getExternalContour.ts

@@ -0,0 +1,27 @@
+import type { Mask } from '../Mask.ts';
+
+import { getContourMoore } from './getContourMoore.ts';
+import { getContourPavlidis } from './getContourPavlidis.ts';
+import type { GetBorderPointsOptions } from './maskAnalysis.types.ts';
+
+export type GetExternalContourOptions = Omit<
+  GetBorderPointsOptions,
+  'innerBorers'
+>;
+/**
+ * Finds external contour of the mask.
+ * @param mask - Mask to find contours from.
+ * @param options - GetExternalContourOptions.
+ * @returns Array of contour points.
+ */
+export function getExternalContour(
+  mask: Mask,
+  options: GetExternalContourOptions = {},
+) {
+  const { allowCorners = false } = options;
+  if (allowCorners) {
+    return getContourPavlidis(mask);
+  } else {
+    return getContourMoore(mask);
+  }
+}

package/src/maskAnalysis/maskAnalysis.types.ts

@@ -70,12 +70,18 @@ export interface Mbr {
 
 export interface GetBorderPointsOptions {
   /**
-   * Should the inner borders be returned too?
+   * Whether to include borders around holes inside the mask.
+   * When `false`, the mask is solid-filled before processing, so only the outer contour is returned.
+   * When `true`, pixels bordering interior holes are returned as well.
    * @default `false`
    */
   innerBorders?: boolean;
   /**
-   * Consider pixels connected by corners?
+   * Whether to use 8-connectivity instead of 4-connectivity when detecting border pixels.
+   * When `false`, a pixel is considered a border only if at least one of its 4 orthogonal
+   * neighbors (up, down, left, right) is unset.
+   * When `true`, diagonal neighbors are also considered, so a pixel touching an unset pixel
+   * only by a corner is also returned as a border point.
    * @default `false`
    */
   allowCorners?: boolean;

package/src/maskAnalysis/utils/getExtendedBorderPoints.ts

@@ -1,5 +1,6 @@
 import type { Mask } from '../../Mask.js';
 import type { Point } from '../../utils/geometry/points.js';
+import { getExternalContour } from '../getExternalContour.ts';
 
 /**
  * Get the pixels that surround an ROI. The pixels include the top and left borders,
@@ -10,10 +11,7 @@ import type { Point } from '../../utils/geometry/points.js';
  * @returns - The array of points.
  */
 export function getExtendedBorderPoints(mask: Mask): Point[] {
-  const borderPoints = mask.getBorderPoints({
-    allowCorners: true,
-    innerBorders: false,
-  });
+  const borderPoints = getExternalContour(mask);
 
   const result: Point[] = [];
 

package/src/maskAnalysis/utils/getExternalContourUtils.ts

@@ -0,0 +1,33 @@
+import type { Mask } from '../../Mask.ts';
+/**
+ * Gets point's row and column from their index and mask width.
+ * @param index - point's index.
+ * @param maskWidth - mask width.
+ * @returns array of point's row and column.
+ */
+export function getCoordsFromIndex(index: number, maskWidth: number) {
+  return [Math.floor(index / maskWidth), index % maskWidth];
+}
+
+/**
+ * Safely get the bit value at the given column and row in the mask, returning 0 if out of bounds.
+ * @param mask - Mask to get the bit from.
+ * @param col - Column index.
+ * @param row - Row index.
+ * @returns the bit value.
+ */
+export function getBitSafe(mask: Mask, col: number, row: number): number {
+  if (!isInBounds(mask, col, row)) return 0;
+  return mask.getBit(col, row);
+}
+
+/**
+ * Checks if the given column and row are within the bounds of the mask.
+ * @param mask - Mask to check against.
+ * @param col - Column index.
+ * @param row - Row index.
+ * @returns whether the given column and row are within the bounds of the mask.
+ */
+function isInBounds(mask: Mask, col: number, row: number): boolean {
+  return col >= 0 && col < mask.width && row >= 0 && row < mask.height;
+}

package/src/roi/Roi.ts

@@ -1,5 +1,6 @@
 import type { Mask } from '../Mask.js';
 import { getConvexHull } from '../maskAnalysis/getConvexHull.js';
+import type { GetExternalContourOptions } from '../maskAnalysis/getExternalContour.ts';
 import { getFeret } from '../maskAnalysis/getFeret.js';
 import { getMbr } from '../maskAnalysis/getMbr.js';
 import type {
@@ -11,6 +12,7 @@ import type { Point } from '../utils/geometry/points.js';
 
 import type { RoiMap } from './RoiMapManager.js';
 import { getBorderPoints } from './getBorderPoints.js';
+import { getExternalContour } from './getExternalContour.ts';
 import type { GetMaskOptions } from './getMask.js';
 import { getMask } from './getMask.js';
 import { getEllipse } from './properties/getEllipse.js';
@@ -129,6 +131,15 @@ export class Roi {
     return getBorderPoints(this, options);
   }
 
+  /**
+   * Finds external contour of the roi from its mask.
+   * @param options - GetExternalContourOptions.
+   * @returns Array of contour points.
+   */
+  public getExternalContour(options?: GetExternalContourOptions): Point[] {
+    return getExternalContour(this, options);
+  }
+
   /**
    * Returns an array of ROIs IDs that are included in the current ROI.
    * This will be useful to know if there are some holes in the ROI.

package/src/roi/getExternalContour.ts

@@ -0,0 +1,17 @@
+import type { GetExternalContourOptions } from '../maskAnalysis/getExternalContour.ts';
+
+import type { Roi } from './Roi.ts';
+
+/**
+ * Finds external contour of the roi from its mask.
+ * @param roi - roi to find contour from.
+ * @param options - GetExternalContourOptions.
+ * @returns Array of contour points.
+ */
+export function getExternalContour(
+  roi: Roi,
+  options?: GetExternalContourOptions,
+) {
+  const mask = roi.getMask();
+  return mask.getExternalContour(options);
+}