image-js 1.0.0-alpha.3 → 1.1.0

package/lib/load/readImg.d.ts.map

@@ -1 +1 @@
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package/lib/load/readImg.js

@@ -1,17 +1,18 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const readCanvas_1 = require("./readCanvas");
-function readImg(img) {
-    // eslint-disable-next-line no-undef
-    const canvas = document.createElement('canvas');
-    canvas.width = img.width;
-    canvas.height = img.height;
-    const ctx = canvas.getContext('2d');
-    if (ctx === null) {
-        throw new Error('could not get context from canvas element');
-    }
-    ctx.drawImage(img, 0, 0);
-    return readCanvas_1.readCanvas(canvas);
-}
-exports.readImg = readImg;
+import { assert } from '../utils/validators/assert.js';
+import { readCanvas } from './readCanvas.js';
+// TODO: Create nodejs version that throws an error
+/**
+ * Read an image from an HTML image source.
+ * @param img - Image source such as an <img> or <svg> element.
+ * @returns The read image.
+ */
+export function readImg(img) {
+    const canvas = document.createElement('canvas');
+    canvas.width = img.width;
+    canvas.height = img.height;
+    const ctx = canvas.getContext('2d');
+    assert(ctx);
+    ctx.drawImage(img, 0, 0);
+    return readCanvas(canvas);
+}
 //# sourceMappingURL=readImg.js.map

package/lib/load/readImg.js.map

@@ -1 +1 @@
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package/lib/maskAnalysis/getBorderPoints.d.ts

@@ -0,0 +1,12 @@
+import type { Mask } from '../Mask.js';
+import type { Point } from '../utils/geometry/points.js';
+import type { GetBorderPointsOptions } from './maskAnalysis.types.js';
+/**
+ * Return an array with the coordinates of the pixels that are on the border of the mask.
+ * The reference is the top-left corner of the ROI.
+ * @param mask - Mask to process.
+ * @param options - Get border points options.
+ * @returns The array of border pixels.
+ */
+export declare function getBorderPoints(mask: Mask, options?: GetBorderPointsOptions): Point[];
+//# sourceMappingURL=getBorderPoints.d.ts.map

package/lib/maskAnalysis/getBorderPoints.d.ts.map

@@ -0,0 +1 @@
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package/lib/maskAnalysis/getBorderPoints.js

@@ -0,0 +1,53 @@
+// TODO: This function could be optimised by following the contour instead of scanning all pixels.
+/**
+ * Return an array with the coordinates of the pixels that are on the border of the mask.
+ * The reference is the top-left corner of the ROI.
+ * @param mask - Mask to process.
+ * @param options - Get border points options.
+ * @returns The array of border pixels.
+ */
+export function getBorderPoints(mask, options = {}) {
+    const { innerBorders = false, allowCorners = false } = options;
+    if (!innerBorders) {
+        mask = mask.solidFill();
+    }
+    const borders = [];
+    // first process frame pixels
+    for (let column = 0; column < mask.width; column++) {
+        if (mask.getBit(column, 0)) {
+            borders.push({ column, row: 0 });
+        }
+        if (mask.getBit(column, mask.height - 1)) {
+            borders.push({ column, row: mask.height - 1 });
+        }
+    }
+    for (let row = 0; row < mask.height; row++) {
+        if (mask.getBit(0, row)) {
+            borders.push({ column: 0, row });
+        }
+        if (mask.getBit(mask.width - 1, row)) {
+            borders.push({ column: mask.width - 1, row });
+        }
+    }
+    for (let row = 1; row < mask.height - 1; row++) {
+        for (let column = 1; column < mask.width - 1; column++) {
+            if (mask.getBit(column, row)) {
+                if (mask.getBit(column - 1, row) === 0 ||
+                    mask.getBit(column, row - 1) === 0 ||
+                    mask.getBit(column + 1, row) === 0 ||
+                    mask.getBit(column, row + 1) === 0) {
+                    borders.push({ column, row });
+                }
+                if (allowCorners &&
+                    (mask.getBit(column - 1, row - 1) === 0 ||
+                        mask.getBit(column - 1, row + 1) === 0 ||
+                        mask.getBit(column + 1, row - 1) === 0 ||
+                        mask.getBit(column + 1, row + 1) === 0)) {
+                    borders.push({ column, row });
+                }
+            }
+        }
+    }
+    return borders;
+}
+//# sourceMappingURL=getBorderPoints.js.map

package/lib/maskAnalysis/getBorderPoints.js.map

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package/lib/maskAnalysis/getConvexHull.d.ts

@@ -0,0 +1,9 @@
+import type { Mask } from '../Mask.js';
+import type { ConvexHull } from './maskAnalysis.types.js';
+/**
+ * Get the vertices of the convex Hull polygon of a mask.
+ * @param mask - Mask to process.
+ * @returns Array of the vertices of the convex Hull in clockwise order.
+ */
+export declare function getConvexHull(mask: Mask): ConvexHull;
+//# sourceMappingURL=getConvexHull.d.ts.map

package/lib/maskAnalysis/getConvexHull.d.ts.map

@@ -0,0 +1 @@
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package/lib/maskAnalysis/getConvexHull.js

@@ -0,0 +1,23 @@
+import { getPolygonArea, getPolygonPerimeter, } from '../utils/geometry/polygons.js';
+import { getExtendedBorderPoints } from './utils/getExtendedBorderPoints.js';
+import { monotoneChainConvexHull as mcch } from './utils/monotoneChainConvexHull.js';
+/**
+ * Get the vertices of the convex Hull polygon of a mask.
+ * @param mask - Mask to process.
+ * @returns Array of the vertices of the convex Hull in clockwise order.
+ */
+export function getConvexHull(mask) {
+    const borderPoints = getExtendedBorderPoints(mask);
+    if (borderPoints.length === 0) {
+        return {
+            points: [],
+            surface: 0,
+            perimeter: 0,
+        };
+    }
+    const points = mcch(borderPoints);
+    const perimeter = getPolygonPerimeter(points);
+    const surface = getPolygonArea(points);
+    return { points, perimeter, surface };
+}
+//# sourceMappingURL=getConvexHull.js.map

package/lib/maskAnalysis/getConvexHull.js.map

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package/lib/maskAnalysis/getFeret.d.ts

@@ -0,0 +1,11 @@
+import type { Mask } from '../Mask.js';
+import type { Feret } from './maskAnalysis.types.js';
+/**
+ * Computes the Feret diameters.
+ * @see {@link https://www.sympatec.com/en/particle-measurement/glossary/particle-shape/#}
+ * @see {@link http://portal.s2nano.org:8282/files/TEM_protocol_NANoREG.pdf}
+ * @param mask - The mask of the ROI.
+ * @returns The Feret diameters.
+ */
+export declare function getFeret(mask: Mask): Feret;
+//# sourceMappingURL=getFeret.d.ts.map

package/lib/maskAnalysis/getFeret.d.ts.map

@@ -0,0 +1 @@
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package/lib/maskAnalysis/getFeret.js

@@ -0,0 +1,181 @@
+import { toDegrees } from '../utils/geometry/angles.js';
+import { rotate } from '../utils/geometry/points.js';
+import { getAngle } from './utils/getAngle.js';
+/**
+ * Computes the Feret diameters.
+ * @see {@link https://www.sympatec.com/en/particle-measurement/glossary/particle-shape/#}
+ * @see {@link http://portal.s2nano.org:8282/files/TEM_protocol_NANoREG.pdf}
+ * @param mask - The mask of the ROI.
+ * @returns The Feret diameters.
+ */
+export function getFeret(mask) {
+    const hull = mask.getConvexHull();
+    const hullPoints = hull.points;
+    if (hull.surface === 0) {
+        return {
+            minDiameter: {
+                length: 0,
+                points: [
+                    { column: 0, row: 0 },
+                    { column: 0, row: 0 },
+                ],
+                angle: 0,
+                calliperLines: [
+                    [
+                        { column: 0, row: 0 },
+                        { column: 0, row: 0 },
+                    ],
+                    [
+                        { column: 0, row: 0 },
+                        { column: 0, row: 0 },
+                    ],
+                ],
+            },
+            maxDiameter: {
+                length: 0,
+                points: [
+                    { column: 0, row: 0 },
+                    { column: 0, row: 0 },
+                ],
+                angle: 0,
+                calliperLines: [
+                    [
+                        { column: 0, row: 0 },
+                        { column: 0, row: 0 },
+                    ],
+                    [
+                        { column: 0, row: 0 },
+                        { column: 0, row: 0 },
+                    ],
+                ],
+            },
+            aspectRatio: 1,
+        };
+    }
+    // Compute minimum diameter
+    let minWidth = Number.POSITIVE_INFINITY;
+    let minWidthAngle = 0;
+    let minLinePoints = [];
+    let minLines;
+    for (let i = 0; i < hullPoints.length; i++) {
+        const angle = getAngle(hullPoints[i], hullPoints[(i + 1) % hullPoints.length]);
+        // We rotate so that it is parallel to X axis.
+        const rotatedPoints = rotate(-angle, hullPoints);
+        let currentWidth = 0;
+        let currentMinLinePoints = [];
+        for (let j = 0; j < hullPoints.length; j++) {
+            const absWidth = Math.abs(rotatedPoints[i].row - rotatedPoints[j].row);
+            if (absWidth > currentWidth) {
+                currentWidth = absWidth;
+                currentMinLinePoints = [rotatedPoints[i], rotatedPoints[j]];
+            }
+        }
+        if (currentWidth < minWidth) {
+            minWidth = currentWidth;
+            minWidthAngle = angle;
+            minLinePoints = currentMinLinePoints;
+            const { minIndex: currentMin, maxIndex: currentMax } = findPointIndexesOfExtremeColumns(rotatedPoints);
+            minLines = getMinLines(minWidthAngle, currentMin, currentMax, rotatedPoints, minLinePoints);
+        }
+    }
+    const minDiameter = {
+        points: rotate(minWidthAngle, minLinePoints),
+        length: minWidth,
+        angle: toDegrees(minWidthAngle),
+        calliperLines: minLines,
+    };
+    // Compute maximum diameter
+    let maxLinePoints = [];
+    let maxSquaredWidth = 0;
+    let maxLineIndex = [];
+    for (let i = 0; i < hullPoints.length - 1; i++) {
+        for (let j = i + 1; j < hullPoints.length; j++) {
+            const currentSquaredWidth = (hullPoints[i].column - hullPoints[j].column) ** 2 +
+                (hullPoints[i].row - hullPoints[j].row) ** 2;
+            if (currentSquaredWidth > maxSquaredWidth) {
+                maxSquaredWidth = currentSquaredWidth;
+                maxLinePoints = [hullPoints[i], hullPoints[j]];
+                maxLineIndex = [i, j];
+            }
+        }
+    }
+    const maxAngle = getAngle(maxLinePoints[0], maxLinePoints[1]);
+    const rotatedMaxPoints = rotate(-maxAngle, hullPoints);
+    const { minIndex: currentMin, maxIndex: currentMax } = findPointsIndexesOfExtremeRows(rotatedMaxPoints);
+    const maxLines = getMaxLines(maxAngle, currentMin, currentMax, rotatedMaxPoints, maxLineIndex);
+    const maxDiameter = {
+        length: Math.sqrt(maxSquaredWidth),
+        angle: toDegrees(getAngle(maxLinePoints[0], maxLinePoints[1])),
+        points: maxLinePoints,
+        calliperLines: maxLines,
+    };
+    return {
+        minDiameter,
+        maxDiameter,
+        aspectRatio: minDiameter.length / maxDiameter.length,
+    };
+}
+function findPointIndexesOfExtremeColumns(points) {
+    let maxIndex = 0;
+    let minIndex = 0;
+    for (let i = 0; i < points.length; i++) {
+        if (points[i].column > points[maxIndex].column) {
+            maxIndex = i;
+        }
+        if (points[i].column < points[minIndex].column) {
+            minIndex = i;
+        }
+    }
+    return { minIndex, maxIndex };
+}
+function findPointsIndexesOfExtremeRows(points) {
+    let maxIndex = 0;
+    let minIndex = 0;
+    for (let i = 0; i < points.length; i++) {
+        if (points[i].row > points[maxIndex].row) {
+            maxIndex = i;
+        }
+        if (points[i].row < points[minIndex].row) {
+            minIndex = i;
+        }
+    }
+    return { minIndex, maxIndex };
+}
+function getMinLines(angle, min, max, rotatedPoints, feretPoints) {
+    const minLine1 = [
+        { column: rotatedPoints[min].column, row: feretPoints[0].row },
+        {
+            column: rotatedPoints[max].column,
+            row: feretPoints[0].row,
+        },
+    ];
+    const minLine2 = [
+        {
+            column: rotatedPoints[min].column,
+            row: feretPoints[1].row,
+        },
+        {
+            column: rotatedPoints[max].column,
+            row: feretPoints[1].row,
+        },
+    ];
+    return [rotate(angle, minLine1), rotate(angle, minLine2)];
+}
+function getMaxLines(angle, min, max, rotatedPoints, index) {
+    const maxLine1 = [
+        { column: rotatedPoints[index[0]].column, row: rotatedPoints[min].row },
+        {
+            column: rotatedPoints[index[0]].column,
+            row: rotatedPoints[max].row,
+        },
+    ];
+    const maxLine2 = [
+        { column: rotatedPoints[index[1]].column, row: rotatedPoints[min].row },
+        {
+            column: rotatedPoints[index[1]].column,
+            row: rotatedPoints[max].row,
+        },
+    ];
+    return [rotate(angle, maxLine1), rotate(angle, maxLine2)];
+}
+//# sourceMappingURL=getFeret.js.map

package/lib/maskAnalysis/getFeret.js.map

@@ -0,0 +1 @@
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package/lib/maskAnalysis/getMbr.d.ts

@@ -0,0 +1,9 @@
+import type { Mask } from '../Mask.js';
+import type { Mbr } from './maskAnalysis.types.js';
+/**
+ * Get the four corners of the minimum bounding rectangle of an ROI.
+ * @param mask - The ROI to process.
+ * @returns The array of corners.
+ */
+export declare function getMbr(mask: Mask): Mbr;
+//# sourceMappingURL=getMbr.d.ts.map

package/lib/maskAnalysis/getMbr.d.ts.map

@@ -0,0 +1 @@
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package/lib/maskAnalysis/getMbr.js

@@ -0,0 +1,13 @@
+import { getExtendedBorderPoints } from './utils/getExtendedBorderPoints.js';
+import { getMbrFromPoints } from './utils/getMbrFromPoints.js';
+import { monotoneChainConvexHull } from './utils/monotoneChainConvexHull.js';
+/**
+ * Get the four corners of the minimum bounding rectangle of an ROI.
+ * @param mask - The ROI to process.
+ * @returns The array of corners.
+ */
+export function getMbr(mask) {
+    const vertices = monotoneChainConvexHull(getExtendedBorderPoints(mask));
+    return getMbrFromPoints(vertices);
+}
+//# sourceMappingURL=getMbr.js.map

package/lib/maskAnalysis/getMbr.js.map

@@ -0,0 +1 @@
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package/lib/maskAnalysis/index.d.ts

@@ -0,0 +1,2 @@
+export * from './maskAnalysis.types.js';
+//# sourceMappingURL=index.d.ts.map

package/lib/maskAnalysis/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/maskAnalysis/index.ts"],"names":[],"mappings":"AAAA,cAAc,yBAAyB,CAAC"}

package/lib/maskAnalysis/index.js

@@ -0,0 +1,2 @@
+export * from './maskAnalysis.types.js';
+//# sourceMappingURL=index.js.map

package/lib/maskAnalysis/index.js.map

@@ -0,0 +1 @@
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package/lib/maskAnalysis/maskAnalysis.types.d.ts

@@ -0,0 +1,97 @@
+import type { Point } from '../utils/geometry/points.js';
+export interface FeretDiameter {
+    /**
+     * Start and end point of the Feret diameter.
+     */
+    points: Point[];
+    /**
+     * Length of the diameter.
+     */
+    length: number;
+    /**
+     * Angle between the diameter and a horizontal line in degrees.
+     */
+    angle: number;
+    /**
+     * Calliper lines that pass by endpoints of Feret diameters.
+     */
+    calliperLines: [[Point, Point], [Point, Point]];
+}
+export interface Feret {
+    /**
+     * Smaller Feret diameter.
+     */
+    minDiameter: FeretDiameter;
+    /**
+     * Bigger Feret diameter.
+     */
+    maxDiameter: FeretDiameter;
+    /**
+     * Ratio between the smaller and the bigger diameter.
+     * Expresses how elongated the shape is. This is a value between 0 and 1.
+     */
+    aspectRatio: number;
+}
+/**
+ * Minimum bounding rectangle of a mask.
+ */
+export interface Mbr {
+    /**
+     * Vertices of the MBR in clockwise order.
+     */
+    points: Point[];
+    /**
+     * Perimeter of the MBR.
+     */
+    perimeter: number;
+    /**
+     * Surface of the MBR.
+     */
+    surface: number;
+    /**
+     * Width of the rectangle.
+     */
+    width: number;
+    /**
+     * Height of the rectangle.
+     */
+    height: number;
+    /**
+     * Angle between the rectangle and a horizontal line in radians.
+     */
+    angle: number;
+    /**
+     * Ratio between width and height.
+     */
+    aspectRatio: number;
+}
+export interface GetBorderPointsOptions {
+    /**
+     * Should the inner borders be returned too?
+     * @default `false`
+     */
+    innerBorders?: boolean;
+    /**
+     * Consider pixels connected by corners?
+     * @default `false`
+     */
+    allowCorners?: boolean;
+}
+/**
+ * Convex Hull polygon of a mask.
+ */
+export interface ConvexHull {
+    /**
+     * Vertices of the convex Hull in clockwise order.
+     */
+    points: Point[];
+    /**
+     * Perimeter of the convex Hull.
+     */
+    perimeter: number;
+    /**
+     * Surface of the convex Hull.
+     */
+    surface: number;
+}
+//# sourceMappingURL=maskAnalysis.types.d.ts.map

package/lib/maskAnalysis/maskAnalysis.types.d.ts.map

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package/lib/maskAnalysis/maskAnalysis.types.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=maskAnalysis.types.js.map

package/lib/maskAnalysis/maskAnalysis.types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"maskAnalysis.types.js","sourceRoot":"","sources":["../../src/maskAnalysis/maskAnalysis.types.ts"],"names":[],"mappings":""}

package/lib/maskAnalysis/utils/getAngle.d.ts

@@ -0,0 +1,19 @@
+import type { Point } from '../../utils/geometry/points.js';
+/**
+ * The angle in radians of a vector relatively to the x axis.
+ * The angle is positive in the clockwise direction.
+ * This is an optimized version because it assumes that one of
+ * the points is on the line y = 0.
+ * @param p1 - First point.
+ * @param p2 - Second point.
+ * @returns Rotation angle in radians to make the line horizontal. -π <= angle <= π.
+ */
+export declare function getAngle(p1: Point, p2: Point): number;
+/**
+ * Compute the clockwise angle in radians between the x-axis and the segment p1-p2.
+ * @param p1 - First point.
+ * @param p2 - Second point.
+ * @returns Clockwise angle between x-axis and the segment.
+ */
+export declare function getClockwiseAngle(p1: Point, p2: Point): number;
+//# sourceMappingURL=getAngle.d.ts.map

package/lib/maskAnalysis/utils/getAngle.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"getAngle.d.ts","sourceRoot":"","sources":["../../../src/maskAnalysis/utils/getAngle.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,gCAAgC,CAAC;AAG5D;;;;;;;;GAQG;AACH,wBAAgB,QAAQ,CAAC,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,GAAG,MAAM,CAMrD;AAED;;;;;GAKG;AACH,wBAAgB,iBAAiB,CAAC,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,GAAG,MAAM,CAa9D"}

package/lib/maskAnalysis/utils/getAngle.js

@@ -0,0 +1,41 @@
+import { difference, normalize } from '../../utils/geometry/points.js';
+/**
+ * The angle in radians of a vector relatively to the x axis.
+ * The angle is positive in the clockwise direction.
+ * This is an optimized version because it assumes that one of
+ * the points is on the line y = 0.
+ * @param p1 - First point.
+ * @param p2 - Second point.
+ * @returns Rotation angle in radians to make the line horizontal. -π <= angle <= π.
+ */
+export function getAngle(p1, p2) {
+    const diff = difference(p2, p1);
+    const vector = normalize(diff);
+    const angle = Math.acos(vector.column);
+    if (vector.row < 0)
+        return -angle;
+    return angle;
+}
+/**
+ * Compute the clockwise angle in radians between the x-axis and the segment p1-p2.
+ * @param p1 - First point.
+ * @param p2 - Second point.
+ * @returns Clockwise angle between x-axis and the segment.
+ */
+export function getClockwiseAngle(p1, p2) {
+    const diff = difference(p2, p1);
+    const vector = normalize(diff);
+    const atan = -Math.atan(vector.row / vector.column);
+    if (vector.column < 0) {
+        if (vector.row < 0) {
+            return atan - Math.PI;
+        }
+        else {
+            return atan + Math.PI;
+        }
+    }
+    else {
+        return atan;
+    }
+}
+//# sourceMappingURL=getAngle.js.map

package/lib/maskAnalysis/utils/getAngle.js.map

@@ -0,0 +1 @@
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package/lib/maskAnalysis/utils/getExtendedBorderPoints.d.ts

@@ -0,0 +1,12 @@
+import type { Mask } from '../../Mask.js';
+import type { Point } from '../../utils/geometry/points.js';
+/**
+ * Get the pixels that surround an ROI. The pixels include the top and left borders,
+ * but extend the right and bottom one by one pixel.
+ * This allows to compute the minimum bounding rectangle with the correct surface.
+ * This method is only used to calculate minimalBoundRectangle and convexHull.
+ * @param mask - The ROI for which to get the extended border points.
+ * @returns - The array of points.
+ */
+export declare function getExtendedBorderPoints(mask: Mask): Point[];
+//# sourceMappingURL=getExtendedBorderPoints.d.ts.map

package/lib/maskAnalysis/utils/getExtendedBorderPoints.d.ts.map

@@ -0,0 +1 @@
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