igv 3.7.0 → 3.7.1

package/README.md

@@ -18,19 +18,19 @@ Below are examples and a quickstart guide.  See the [developer documentation](ht
 
 # Examples
  
-***[Alignments](https://igv.org/web/release/3.7.0/examples/cram-vcf.html)***
+***[Alignments](https://igv.org/web/release/3.7.1/examples/cram-vcf.html)***
 
-***[Interactions](https://igv.org/web/release/3.7.0/examples/interact.html)***
+***[Interactions](https://igv.org/web/release/3.7.1/examples/interact.html)***
 
-***[Copy number](https://igv.org/web/release/3.7.0/examples/copyNumber.html)***
+***[Copy number](https://igv.org/web/release/3.7.1/examples/copyNumber.html)***
 
-***[Multiple regions](https://igv.org/web/release/3.7.0/examples/multi-locus.html)***
+***[Multiple regions](https://igv.org/web/release/3.7.1/examples/multi-locus.html)***
 
-***[Mutation Annotation Format (MAF)](https://igv.org/web/release/3.7.0/examples/maf-tcga.html)***
+***[Mutation Annotation Format (MAF)](https://igv.org/web/release/3.7.1/examples/maf-tcga.html)***
 
-***[Variant color options](https://igv.org/web/release/3.7.0/examples/variant-colors.html)***
+***[Variant color options](https://igv.org/web/release/3.7.1/examples/variant-colors.html)***
 
-***[More](https://igv.org/web/release/3.7.0/examples/)***
+***[More](https://igv.org/web/release/3.7.1/examples/)***
 
  
 # Quickstart
@@ -39,18 +39,18 @@ Below are examples and a quickstart guide.  See the [developer documentation](ht
 igv.js consists of a single javascript file with no external dependencies.  
 
 Pre-built files for script include, AMD, or CJS module systems (igv.min.js) and an ES6 module (igv.esm.min.js)
-can be downloaded from [https://cdn.jsdelivr.net/npm/igv@3.7.0/dist/](https://cdn.jsdelivr.net/npm/igv@3.7.0/dist/). 
+can be downloaded from [https://cdn.jsdelivr.net/npm/igv@3.7.1/dist/](https://cdn.jsdelivr.net/npm/igv@3.7.1/dist/). 
 
 To import igv as an ES6 module
 
 ```javascript
-import igv from "https://cdn.jsdelivr.net/npm/igv@3.7.0/dist/igv.esm.min.js"
+import igv from "https://cdn.jsdelivr.net/npm/igv@3.7.1/dist/igv.esm.min.js"
 ``` 
 
 Or as a script include (defines the "igv" global)
 
 ```html
-<script src="https://cdn.jsdelivr.net/npm/igv@3.7.0/dist/igv.min.js"></script>
+<script src="https://cdn.jsdelivr.net/npm/igv@3.7.1/dist/igv.min.js"></script>
 ```   
  
 Alternatively you can install with npm  

package/dist/igv.esm.js

@@ -44251,7 +44251,7 @@ class MergedTrack extends TrackBase {
                     track.autoscaleGroup = name;
                 }
                 track.isMergedTrack = false;
-                browser.addTrack(track);
+                await browser.addTrack(track);
             }
             await browser.updateViews();
             browser.reorderTracks();
@@ -44337,7 +44337,7 @@ class OverlayTrackButton extends NavbarButton {
 
         const mouseClickHandler = () => {
             this.setVisibility(false);
-            trackOverlayClickHandler.call(this);
+            this.trackOverlayClickHandler();
         };
 
         this.boundMouseClickHandler = mouseClickHandler.bind(this);
@@ -44347,50 +44347,49 @@ class OverlayTrackButton extends NavbarButton {
         this.setVisibility(true);
 
     }
-}
 
-async function trackOverlayClickHandler(e) {
+    async trackOverlayClickHandler() {
 
-    if (true === isOverlayTrackCriteriaMet(this.browser)) {
+        if (true === isOverlayTrackCriteriaMet(this.browser)) {
 
-        const tracks = this.browser.getSelectedTrackViews().map(({track}) => track);
-        for (const track of tracks) {
-            track.selected = false;
-        }
+            const tracks = this.browser.getSelectedTrackViews().map(({track}) => track);
+            for (const track of tracks) {
+                track.selected = false;
+            }
 
-        // Flatten any merged tracks.  Must do this before their removal
-        const flattenedTracks = [];
-        for (let t of tracks) {
-            if ("merged" === t.type) {
-                flattenedTracks.push(...t.tracks);
-            } else {
-                flattenedTracks.push(t);
+            // Flatten any merged tracks.  Must do this before their removal
+            const flattenedTracks = [];
+            for (let t of tracks) {
+                if ("merged" === t.type) {
+                    flattenedTracks.push(...t.tracks);
+                } else {
+                    flattenedTracks.push(t);
+                }
             }
-        }
 
-        const config =
-            {
-                name: 'Overlay',
-                type: 'merged',
-                autoscale: false,
-                alpha: 0.5, //fudge * (1.0/tracks.length),
-                height: Math.max(...tracks.map(({height}) => height)),
-                order: Math.min(...tracks.map(({order}) => order)),
-            };
+            const config =
+                {
+                    name: 'Overlay',
+                    type: 'merged',
+                    autoscale: false,
+                    alpha: 0.5, //fudge * (1.0/tracks.length),
+                    height: Math.max(...tracks.map(({height}) => height)),
+                    order: Math.min(...tracks.map(({order}) => order))
+                };
 
-        const mergedTrack = new MergedTrack(config, this.browser, flattenedTracks);
+            const mergedTrack = new MergedTrack(config, this.browser, flattenedTracks);
 
-        for (const track of tracks) {
-            const idx = this.browser.trackViews.indexOf(track.trackView);
-            this.browser.trackViews.splice(idx, 1);
-            track.trackView.dispose();
-        }
+            for (const track of tracks) {
+                const idx = this.browser.trackViews.indexOf(track.trackView);
+                this.browser.trackViews.splice(idx, 1);
+                track.trackView.dispose();
+            }
 
-        this.browser.addTrack(mergedTrack);
-        await mergedTrack.trackView.updateViews();
-        this.browser.reorderTracks();
+            await this.browser.addTrack(mergedTrack);
+            await mergedTrack.trackView.updateViews();
+            this.browser.reorderTracks();
+        }
     }
-
 }
 
 function isOverlayTrackCriteriaMet(browser) {
@@ -76477,7 +76476,7 @@ function createReferenceFrameList(loci, genome, browserFlanking, minimumBases, v
     })
 }
 
-const _version = "3.7.0";
+const _version = "3.7.1";
 function version() {
     return _version
 }