icn3d 3.35.1 → 3.36.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (4) hide show
  1. package/icn3d.js +453 -352
  2. package/icn3d.min.js +4 -4
  3. package/icn3d.module.js +453 -352
  4. package/package.json +1 -1
package/icn3d.js CHANGED
@@ -8923,96 +8923,96 @@ class ClickMenu {
8923
8923
  let thisClass = this;
8924
8924
  //mn 1
8925
8925
  // clkMn1_mmtfid: function() {
8926
- me.myEventCls.onIds("#" + me.pre + "mn1_vastplus", "click", function(e) { me.icn3d; //e.preventDefault();
8926
+ me.myEventCls.onIds("#" + me.pre + "mn1_vastplus", "click", function(e) { me.icn3d; e.preventDefault();
8927
8927
  me.htmlCls.dialogCls.openDlg('dl_vastplus', 'Please input PDB ID for VAST+');
8928
8928
  });
8929
8929
 
8930
- me.myEventCls.onIds("#" + me.pre + "mn1_vast", "click", function(e) { me.icn3d; //e.preventDefault();
8930
+ me.myEventCls.onIds("#" + me.pre + "mn1_vast", "click", function(e) { me.icn3d; e.preventDefault();
8931
8931
  me.htmlCls.dialogCls.openDlg('dl_vast', 'Please input chain or PDB file for VAST');
8932
8932
  });
8933
8933
 
8934
- me.myEventCls.onIds("#" + me.pre + "mn1_foldseek", "click", function(e) { me.icn3d; //e.preventDefault();
8934
+ me.myEventCls.onIds("#" + me.pre + "mn1_foldseek", "click", function(e) { me.icn3d; e.preventDefault();
8935
8935
  me.htmlCls.dialogCls.openDlg('dl_foldseek', 'Submit your selection to Foldseek');
8936
8936
  });
8937
8937
 
8938
- me.myEventCls.onIds("#" + me.pre + "mn1_mmtfid", "click", function(e) { me.icn3d; //e.preventDefault();
8938
+ me.myEventCls.onIds("#" + me.pre + "mn1_mmtfid", "click", function(e) { me.icn3d; e.preventDefault();
8939
8939
  me.htmlCls.dialogCls.openDlg('dl_mmtfid', 'Please input BCIF/MMTF ID');
8940
8940
  });
8941
8941
 
8942
8942
  // clkMn1_pdbid: function() {
8943
- me.myEventCls.onIds("#" + me.pre + "mn1_pdbid", "click", function(e) { me.icn3d; //e.preventDefault();
8943
+ me.myEventCls.onIds("#" + me.pre + "mn1_pdbid", "click", function(e) { me.icn3d; e.preventDefault();
8944
8944
  me.htmlCls.dialogCls.openDlg('dl_pdbid', 'Please input PDB ID');
8945
8945
  });
8946
8946
 
8947
- me.myEventCls.onIds("#" + me.pre + "mn1_afid", "click", function(e) { me.icn3d; //e.preventDefault();
8947
+ me.myEventCls.onIds("#" + me.pre + "mn1_afid", "click", function(e) { me.icn3d; e.preventDefault();
8948
8948
  me.htmlCls.dialogCls.openDlg('dl_afid', 'Please input AlphaFold UniProt ID');
8949
8949
  });
8950
8950
 
8951
- me.myEventCls.onIds("#" + me.pre + "mn1_refseqid", "click", function(e) { me.icn3d; //e.preventDefault();
8951
+ me.myEventCls.onIds("#" + me.pre + "mn1_refseqid", "click", function(e) { me.icn3d; e.preventDefault();
8952
8952
  me.htmlCls.dialogCls.openDlg('dl_refseqid', 'Please input NCBI Protein Accession');
8953
8953
  });
8954
8954
 
8955
- me.myEventCls.onIds("#" + me.pre + "mn1_opmid", "click", function(e) { me.icn3d; //e.preventDefault();
8955
+ me.myEventCls.onIds("#" + me.pre + "mn1_opmid", "click", function(e) { me.icn3d; e.preventDefault();
8956
8956
  me.htmlCls.dialogCls.openDlg('dl_opmid', 'Please input OPM PDB ID');
8957
8957
  });
8958
8958
 
8959
- me.myEventCls.onIds("#" + me.pre + "mn1_align", "click", function(e) { me.icn3d; //e.preventDefault();
8959
+ me.myEventCls.onIds("#" + me.pre + "mn1_align", "click", function(e) { me.icn3d; e.preventDefault();
8960
8960
  me.htmlCls.dialogCls.openDlg('dl_align', 'Align two PDB structures');
8961
8961
  });
8962
8962
 
8963
- me.myEventCls.onIds("#" + me.pre + "mn1_alignaf", "click", function(e) { me.icn3d; //e.preventDefault();
8963
+ me.myEventCls.onIds("#" + me.pre + "mn1_alignaf", "click", function(e) { me.icn3d; e.preventDefault();
8964
8964
  me.htmlCls.dialogCls.openDlg('dl_alignaf', 'Align two AlphaFold structures');
8965
8965
  });
8966
8966
 
8967
- me.myEventCls.onIds("#" + me.pre + "mn1_chainalign", "click", function(e) { me.icn3d; //e.preventDefault();
8967
+ me.myEventCls.onIds("#" + me.pre + "mn1_chainalign", "click", function(e) { me.icn3d; e.preventDefault();
8968
8968
  me.htmlCls.dialogCls.openDlg('dl_chainalign', 'Align multiple chains by structure alignment');
8969
8969
  });
8970
8970
 
8971
- me.myEventCls.onIds("#" + me.pre + "mn1_chainalign2", "click", function(e) { me.icn3d; //e.preventDefault();
8971
+ me.myEventCls.onIds("#" + me.pre + "mn1_chainalign2", "click", function(e) { me.icn3d; e.preventDefault();
8972
8972
  me.htmlCls.dialogCls.openDlg('dl_chainalign2', 'Align multiple chains by sequence alignment');
8973
8973
  });
8974
8974
 
8975
- me.myEventCls.onIds("#" + me.pre + "mn1_chainalign3", "click", function(e) { me.icn3d; //e.preventDefault();
8975
+ me.myEventCls.onIds("#" + me.pre + "mn1_chainalign3", "click", function(e) { me.icn3d; e.preventDefault();
8976
8976
  me.htmlCls.dialogCls.openDlg('dl_chainalign3', 'Align multiple chains residue by residue');
8977
8977
  });
8978
8978
 
8979
- me.myEventCls.onIds("#" + me.pre + "mn1_mutation", "click", function(e) { me.icn3d; //e.preventDefault();
8979
+ me.myEventCls.onIds("#" + me.pre + "mn1_mutation", "click", function(e) { me.icn3d; e.preventDefault();
8980
8980
  me.htmlCls.dialogCls.openDlg('dl_mutation', 'Show the mutations in 3D');
8981
8981
  });
8982
8982
 
8983
- me.myEventCls.onIds("#" + me.pre + "mn1_pdbfile", "click", function(e) { me.icn3d; //e.preventDefault();
8983
+ me.myEventCls.onIds("#" + me.pre + "mn1_pdbfile", "click", function(e) { me.icn3d; e.preventDefault();
8984
8984
  //me = me.setIcn3dui($(this).attr('id'));
8985
8985
  me.htmlCls.dialogCls.openDlg('dl_pdbfile', 'Please input PDB File');
8986
8986
  });
8987
- me.myEventCls.onIds(["#" + me.pre + "mn1_pdbfile_app", "#" + me.pre + "tool_pdbfile"], "click", function(e) { me.icn3d; //e.preventDefault();
8987
+ me.myEventCls.onIds(["#" + me.pre + "mn1_pdbfile_app", "#" + me.pre + "tool_pdbfile"], "click", function(e) { me.icn3d; e.preventDefault();
8988
8988
  //me = me.setIcn3dui($(this).attr('id'));
8989
8989
  me.htmlCls.dialogCls.openDlg('dl_pdbfile_app', 'Please append PDB Files');
8990
8990
  });
8991
8991
 
8992
- me.myEventCls.onIds("#" + me.pre + "mn1_mol2file", "click", function(e) { me.icn3d; //e.preventDefault();
8992
+ me.myEventCls.onIds("#" + me.pre + "mn1_mol2file", "click", function(e) { me.icn3d; e.preventDefault();
8993
8993
  me.htmlCls.dialogCls.openDlg('dl_mol2file', 'Please input Mol2 File');
8994
8994
  });
8995
8995
 
8996
- me.myEventCls.onIds("#" + me.pre + "mn1_sdffile", "click", function(e) { me.icn3d; //e.preventDefault();
8996
+ me.myEventCls.onIds("#" + me.pre + "mn1_sdffile", "click", function(e) { me.icn3d; e.preventDefault();
8997
8997
  me.htmlCls.dialogCls.openDlg('dl_sdffile', 'Please input SDF File');
8998
8998
  });
8999
8999
 
9000
- me.myEventCls.onIds("#" + me.pre + "mn1_xyzfile", "click", function(e) { me.icn3d; //e.preventDefault();
9000
+ me.myEventCls.onIds("#" + me.pre + "mn1_xyzfile", "click", function(e) { me.icn3d; e.preventDefault();
9001
9001
  me.htmlCls.dialogCls.openDlg('dl_xyzfile', 'Please input XYZ File');
9002
9002
  });
9003
9003
 
9004
- me.myEventCls.onIds("#" + me.pre + "mn1_afmapfile", "click", function(e) { me.icn3d; //e.preventDefault();
9004
+ me.myEventCls.onIds("#" + me.pre + "mn1_afmapfile", "click", function(e) { me.icn3d; e.preventDefault();
9005
9005
  me.htmlCls.dialogCls.openDlg('dl_afmapfile', 'Please input AlphaFold PAE File');
9006
9006
  });
9007
9007
 
9008
- me.myEventCls.onIds("#" + me.pre + "mn1_urlfile", "click", function(e) { me.icn3d; //e.preventDefault();
9008
+ me.myEventCls.onIds("#" + me.pre + "mn1_urlfile", "click", function(e) { me.icn3d; e.preventDefault();
9009
9009
  me.htmlCls.dialogCls.openDlg('dl_urlfile', 'Load data by URL');
9010
9010
  });
9011
9011
 
9012
- me.myEventCls.onIds("#" + me.pre + "mn1_fixedversion", "click", function(e) { me.icn3d; //e.preventDefault();
9012
+ me.myEventCls.onIds("#" + me.pre + "mn1_fixedversion", "click", function(e) { me.icn3d; e.preventDefault();
9013
9013
  me.htmlCls.dialogCls.openDlg('dl_fixedversion', 'Open Share Link URL in the archived version of iCn3D');
9014
9014
  });
9015
- me.myEventCls.onIds("#" + me.pre + "reload_fixedversion", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9015
+ me.myEventCls.onIds("#" + me.pre + "reload_fixedversion", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9016
9016
  let url = $("#" + me.pre + "sharelinkurl").val();
9017
9017
  thisClass.setLogCmd("open " + url, false);
9018
9018
  localStorage.setItem('fixedversion', '1');
@@ -9020,73 +9020,73 @@ class ClickMenu {
9020
9020
  window.open(url, urlTarget);
9021
9021
  });
9022
9022
 
9023
- me.myEventCls.onIds("#" + me.pre + "mn1_mmciffile", "click", function(e) { me.icn3d; //e.preventDefault();
9023
+ me.myEventCls.onIds("#" + me.pre + "mn1_mmciffile", "click", function(e) { me.icn3d; e.preventDefault();
9024
9024
  me.htmlCls.dialogCls.openDlg('dl_mmciffile', 'Please append mmCIF File');
9025
9025
  });
9026
9026
 
9027
- me.myEventCls.onIds("#" + me.pre + "mn1_mmcifid", "click", function(e) { me.icn3d; //e.preventDefault();
9027
+ me.myEventCls.onIds("#" + me.pre + "mn1_mmcifid", "click", function(e) { me.icn3d; e.preventDefault();
9028
9028
  me.htmlCls.dialogCls.openDlg('dl_mmcifid', 'Please input mmCIF ID');
9029
9029
  });
9030
9030
 
9031
- me.myEventCls.onIds("#" + me.pre + "mn1_mmdbid", "click", function(e) { me.icn3d; //e.preventDefault();
9031
+ me.myEventCls.onIds("#" + me.pre + "mn1_mmdbid", "click", function(e) { me.icn3d; e.preventDefault();
9032
9032
  me.htmlCls.dialogCls.openDlg('dl_mmdbid', 'Please input MMDB or PDB ID');
9033
9033
  });
9034
9034
 
9035
- me.myEventCls.onIds(["#" + me.pre + "mn1_mmdbafid", , "#" + me.pre + "tool_mmdbafid"], "click", function(e) { me.icn3d; //e.preventDefault();
9035
+ me.myEventCls.onIds(["#" + me.pre + "mn1_mmdbafid", , "#" + me.pre + "tool_mmdbafid"], "click", function(e) { me.icn3d; e.preventDefault();
9036
9036
  me.htmlCls.dialogCls.openDlg('dl_mmdbafid', 'Please input PDB/MMDB/AlphaFold UniProt IDs');
9037
9037
  });
9038
9038
 
9039
- me.myEventCls.onIds("#" + me.pre + "mn1_blast_rep_id", "click", function(e) { me.icn3d; //e.preventDefault();
9039
+ me.myEventCls.onIds("#" + me.pre + "mn1_blast_rep_id", "click", function(e) { me.icn3d; e.preventDefault();
9040
9040
  me.htmlCls.dialogCls.openDlg('dl_blast_rep_id', 'Align sequence to structure');
9041
9041
  });
9042
9042
 
9043
- me.myEventCls.onIds("#" + me.pre + "mn1_esmfold", "click", function(e) { me.icn3d; //e.preventDefault();
9043
+ me.myEventCls.onIds("#" + me.pre + "mn1_esmfold", "click", function(e) { me.icn3d; e.preventDefault();
9044
9044
  me.htmlCls.dialogCls.openDlg('dl_esmfold', 'Sequence to structure prediction with ESMFold');
9045
9045
  });
9046
9046
 
9047
- me.myEventCls.onIds("#" + me.pre + "mn1_proteinname", "click", function(e) { me.icn3d; //e.preventDefault();
9047
+ me.myEventCls.onIds("#" + me.pre + "mn1_proteinname", "click", function(e) { me.icn3d; e.preventDefault();
9048
9048
  me.htmlCls.dialogCls.openDlg('dl_proteinname', 'Please input protein or gene name');
9049
9049
  });
9050
9050
 
9051
- me.myEventCls.onIds("#" + me.pre + "mn1_cid", "click", function(e) { me.icn3d; //e.preventDefault();
9051
+ me.myEventCls.onIds("#" + me.pre + "mn1_cid", "click", function(e) { me.icn3d; e.preventDefault();
9052
9052
  me.htmlCls.dialogCls.openDlg('dl_cid', 'Please input PubChem Compound');
9053
9053
  });
9054
9054
 
9055
- me.myEventCls.onIds("#" + me.pre + "mn1_pngimage", "click", function(e) { me.icn3d; //e.preventDefault();
9056
- me.htmlCls.dialogCls.openDlg('dl_pngimage', 'Please input the PNG image');
9055
+ me.myEventCls.onIds("#" + me.pre + "mn1_pngimage", "click", function(e) { me.icn3d; e.preventDefault();
9056
+ me.htmlCls.dialogCls.openDlg('dl_pngimage', 'Please append PNG images');
9057
9057
  });
9058
9058
 
9059
- me.myEventCls.onIds("#" + me.pre + "mn1_state", "click", function(e) { me.icn3d; //e.preventDefault();
9059
+ me.myEventCls.onIds("#" + me.pre + "mn1_state", "click", function(e) { me.icn3d; e.preventDefault();
9060
9060
  me.htmlCls.dialogCls.openDlg('dl_state', 'Please input the state file');
9061
9061
  });
9062
9062
 
9063
- me.myEventCls.onIds("#" + me.pre + "mn1_selection", "click", function(e) { me.icn3d; //e.preventDefault();
9063
+ me.myEventCls.onIds("#" + me.pre + "mn1_selection", "click", function(e) { me.icn3d; e.preventDefault();
9064
9064
  me.htmlCls.dialogCls.openDlg('dl_selection', 'Please input the selection file');
9065
9065
  });
9066
9066
 
9067
- me.myEventCls.onIds("#" + me.pre + "mn1_collection", "click", function (e) { me.icn3d; //e.preventDefault();
9067
+ me.myEventCls.onIds("#" + me.pre + "mn1_collection", "click", function (e) { me.icn3d; e.preventDefault();
9068
9068
  me.htmlCls.dialogCls.openDlg("dl_selectCollections", "Select Collections");
9069
9069
  });
9070
9070
 
9071
- me.myEventCls.onIds("#" + me.pre + "mn1_dsn6", "click", function(e) { me.icn3d; //e.preventDefault();
9071
+ me.myEventCls.onIds("#" + me.pre + "mn1_dsn6", "click", function(e) { me.icn3d; e.preventDefault();
9072
9072
  me.htmlCls.dialogCls.openDlg('dl_dsn6', 'Please input the map file to display electron density map');
9073
9073
  });
9074
9074
 
9075
9075
 
9076
- me.myEventCls.onIds(["#" + me.pre + "mn1_delphi", "#" + me.pre + "mn1_delphi2", "#" + me.pre + "tool_delphi"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9076
+ me.myEventCls.onIds(["#" + me.pre + "mn1_delphi", "#" + me.pre + "mn1_delphi2", "#" + me.pre + "tool_delphi"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
9077
9077
  ic.loadPhiFrom = 'delphi';
9078
9078
  $("#" + me.pre + "dl_delphi_tabs").tabs();
9079
9079
  me.htmlCls.dialogCls.openDlg('dl_delphi', 'Please set parameters to display DelPhi potential map');
9080
9080
  });
9081
9081
 
9082
- me.myEventCls.onIds("#" + me.pre + "mn1_phi", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9082
+ me.myEventCls.onIds("#" + me.pre + "mn1_phi", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9083
9083
  ic.loadPhiFrom = 'phi';
9084
9084
  $("#" + me.pre + "dl_phi_tabs").tabs();
9085
9085
  $("#" + me.pre + "phitab1_tabs").tabs();
9086
9086
  $("#" + me.pre + "phitab2_tabs").tabs();
9087
9087
  me.htmlCls.dialogCls.openDlg('dl_phi', 'Please input local phi or cube file to display DelPhi potential map');
9088
9088
  });
9089
- me.myEventCls.onIds("#" + me.pre + "mn1_phiurl", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9089
+ me.myEventCls.onIds("#" + me.pre + "mn1_phiurl", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9090
9090
  ic.loadPhiFrom = 'phiurl';
9091
9091
  $("#" + me.pre + "dl_phiurl_tabs").tabs();
9092
9092
  $("#" + me.pre + "phiurltab1_tabs").tabs();
@@ -9095,11 +9095,11 @@ class ClickMenu {
9095
9095
  });
9096
9096
 
9097
9097
 
9098
- me.myEventCls.onIds("#" + me.pre + "mn1_dsn6url", "click", function(e) { me.icn3d; //e.preventDefault();
9098
+ me.myEventCls.onIds("#" + me.pre + "mn1_dsn6url", "click", function(e) { me.icn3d; e.preventDefault();
9099
9099
  me.htmlCls.dialogCls.openDlg('dl_dsn6url', 'Please input the map file to display electron density map');
9100
9100
  });
9101
9101
 
9102
- me.myEventCls.onIds("#" + me.pre + "mn1_exportState", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9102
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportState", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9103
9103
  thisClass.setLogCmd("export state file", false);
9104
9104
  let file_pref = Object.keys(ic.structures).join(',');
9105
9105
 
@@ -9107,19 +9107,19 @@ class ClickMenu {
9107
9107
  });
9108
9108
 
9109
9109
 
9110
- me.myEventCls.onIds("#" + me.pre + "mn1_exportPdbRes", "click", function(e) { me.icn3d; //e.preventDefault();
9110
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportPdbRes", "click", function(e) { me.icn3d; e.preventDefault();
9111
9111
  me.htmlCls.setHtmlCls.exportPdb();
9112
9112
 
9113
9113
  thisClass.setLogCmd("export pdb", true);
9114
9114
  });
9115
9115
 
9116
- me.myEventCls.onIds("#" + me.pre + "mn1_exportSecondary", "click", function(e) { me.icn3d; //e.preventDefault();
9116
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportSecondary", "click", function(e) { me.icn3d; e.preventDefault();
9117
9117
  me.htmlCls.setHtmlCls.exportSecondary();
9118
9118
 
9119
9119
  thisClass.setLogCmd("export secondary structure", true);
9120
9120
  });
9121
9121
 
9122
- me.myEventCls.onIds(["#" + me.pre + "delphipdb", "#" + me.pre + "phipdb"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9122
+ me.myEventCls.onIds(["#" + me.pre + "delphipdb", "#" + me.pre + "phipdb"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
9123
9123
  let pdbStr = ic.saveFileCls.getSelectedResiduePDB();
9124
9124
 
9125
9125
  thisClass.setLogCmd("export PDB of selected residues", false);
@@ -9128,57 +9128,57 @@ class ClickMenu {
9128
9128
  ic.saveFileCls.saveFile(file_pref + '_icn3d_residues.pdb', 'text', [pdbStr]);
9129
9129
  });
9130
9130
 
9131
- me.myEventCls.onIds(["#" + me.pre + "delphipqr", "#" + me.pre + "phipqr", "#" + me.pre + "phiurlpqr"], "click", async function(e) { me.icn3d; //e.preventDefault();
9131
+ me.myEventCls.onIds(["#" + me.pre + "delphipqr", "#" + me.pre + "phipqr", "#" + me.pre + "phiurlpqr"], "click", async function(e) { me.icn3d; e.preventDefault();
9132
9132
  await me.htmlCls.setHtmlCls.exportPqr();
9133
9133
  thisClass.setLogCmd("export pqr", true);
9134
9134
  });
9135
9135
 
9136
- // me.myEventCls.onIds("#" + me.pre + "delphipqbh", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9136
+ // me.myEventCls.onIds("#" + me.pre + "delphipqbh", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9137
9137
  // let bPdb = true;
9138
9138
  // await me.htmlCls.setHtmlCls.exportPqr(bPdb);
9139
9139
  // thisClass.setLogCmd("export pdbh", false);
9140
9140
  // });
9141
9141
 
9142
- me.myEventCls.onIds("#" + me.pre + "profixpdb", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9142
+ me.myEventCls.onIds("#" + me.pre + "profixpdb", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9143
9143
  let bHydrogen = false;
9144
9144
  await ic.scapCls.exportPdbProfix(bHydrogen);
9145
9145
  thisClass.setLogCmd("export pdb missing atoms", true);
9146
9146
  });
9147
9147
 
9148
- me.myEventCls.onIds("#" + me.pre + "profixpdbh", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9148
+ me.myEventCls.onIds("#" + me.pre + "profixpdbh", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9149
9149
  let bHydrogen = true;
9150
9150
  await ic.scapCls.exportPdbProfix(bHydrogen);
9151
9151
  thisClass.setLogCmd("export pdb hydrogen", true);
9152
9152
  });
9153
9153
 
9154
- me.myEventCls.onIds("#" + me.pre + "mn1_exportIgstrand", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9154
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportIgstrand", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9155
9155
  ic.refnumCls.exportRefnum('igstrand');
9156
9156
  thisClass.setLogCmd("export refnum igstrand", true);
9157
9157
  });
9158
9158
 
9159
- me.myEventCls.onIds("#" + me.pre + "mn1_exportKabat", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9159
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportKabat", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9160
9160
  ic.refnumCls.exportRefnum('kabat');
9161
9161
  thisClass.setLogCmd("export refnum kabat", true);
9162
9162
  });
9163
9163
 
9164
- me.myEventCls.onIds("#" + me.pre + "mn1_exportImgt", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9164
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportImgt", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9165
9165
  ic.refnumCls.exportRefnum('imgt');
9166
9166
  thisClass.setLogCmd("export refnum imgt", true);
9167
9167
  });
9168
9168
 
9169
- me.myEventCls.onIds("#" + me.pre + "mn1_exportStl", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9169
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportStl", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9170
9170
  thisClass.setLogCmd("export stl file", false);
9171
9171
  //ic.threeDPrintCls.hideStabilizer();
9172
9172
  ic.export3DCls.exportStlFile('');
9173
9173
  });
9174
9174
 
9175
- me.myEventCls.onIds("#" + me.pre + "mn1_exportVrml", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9175
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportVrml", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9176
9176
  thisClass.setLogCmd("export vrml file", false);
9177
9177
  //ic.threeDPrintCls.hideStabilizer();
9178
9178
  ic.export3DCls.exportVrmlFile('');
9179
9179
  });
9180
9180
 
9181
- me.myEventCls.onIds("#" + me.pre + "mn1_exportStlStab", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9181
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportStlStab", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9182
9182
  thisClass.setLogCmd("export stl stabilizer file", false);
9183
9183
  //ic.bRender = false;
9184
9184
  ic.threeDPrintCls.hideStabilizer();
@@ -9187,7 +9187,7 @@ class ClickMenu {
9187
9187
  ic.export3DCls.exportStlFile('_stab');
9188
9188
  });
9189
9189
 
9190
- me.myEventCls.onIds("#" + me.pre + "mn1_exportVrmlStab", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9190
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportVrmlStab", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9191
9191
  thisClass.setLogCmd("export vrml stabilizer file", false);
9192
9192
  //ic.bRender = false;
9193
9193
  ic.threeDPrintCls.hideStabilizer();
@@ -9196,13 +9196,13 @@ class ClickMenu {
9196
9196
  ic.export3DCls.exportVrmlFile('_stab');
9197
9197
  });
9198
9198
 
9199
- me.myEventCls.onIds("#" + me.pre + "mn6_exportInteraction", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9199
+ me.myEventCls.onIds("#" + me.pre + "mn6_exportInteraction", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9200
9200
  thisClass.setLogCmd("export interactions", false);
9201
9201
  if(me.cfg.mmdbid !== undefined) await ic.viewInterPairsCls.retrieveInteractionData();
9202
9202
  ic.viewInterPairsCls.exportInteractions();
9203
9203
  });
9204
9204
 
9205
- me.myEventCls.onIds(["#" + me.pre + "mn1_exportCanvas", "#" + me.pre + "saveimage"], "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9205
+ me.myEventCls.onIds(["#" + me.pre + "mn1_exportCanvas", "#" + me.pre + "saveimage"], "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9206
9206
  // do not record the export command
9207
9207
  //thisClass.setLogCmd("export canvas", true);
9208
9208
  thisClass.setLogCmd("export canvas", false);
@@ -9211,28 +9211,28 @@ class ClickMenu {
9211
9211
  let bPngHtml = true;
9212
9212
  await ic.shareLinkCls.shareLink(bPngHtml);
9213
9213
  });
9214
- me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas1", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9214
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas1", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9215
9215
  thisClass.setLogCmd("export canvas 1", true);
9216
9216
  ic.scaleFactor = 1;
9217
9217
  await ic.shareLinkCls.shareLink(true, true);
9218
9218
  });
9219
- me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas2", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9219
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas2", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9220
9220
  thisClass.setLogCmd("export canvas 2", true);
9221
9221
  ic.scaleFactor = 2;
9222
9222
  await ic.shareLinkCls.shareLink(true, true);
9223
9223
  });
9224
- me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas4", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9224
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas4", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9225
9225
  thisClass.setLogCmd("export canvas 4", true);
9226
9226
  ic.scaleFactor = 4;
9227
9227
  await ic.shareLinkCls.shareLink(true, true);
9228
9228
  });
9229
- me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas8", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9229
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas8", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9230
9230
  thisClass.setLogCmd("export canvas 8", true);
9231
9231
  ic.scaleFactor = 8;
9232
9232
  await ic.shareLinkCls.shareLink(true, true);
9233
9233
  });
9234
9234
 
9235
- me.myEventCls.onIds("#" + me.pre + "mn1_exportCounts", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9235
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportCounts", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9236
9236
  thisClass.setLogCmd("export counts", false);
9237
9237
  let text = '<html><body><div style="text-align:center"><br><b>Total Count for atoms with coordinates</b>:<br/><table align=center border=1 cellpadding=10 cellspacing=0><tr><th>Structure Count</th><th>Chain Count</th><th>Residue Count</th><th>Atom Count</th></tr>';
9238
9238
  text += '<tr><td>' + Object.keys(ic.structures).length + '</td><td>' + Object.keys(ic.chains).length + '</td><td>' + Object.keys(ic.residues).length + '</td><td>' + Object.keys(ic.atoms).length + '</td></tr>';
@@ -9259,7 +9259,7 @@ class ClickMenu {
9259
9259
  ic.saveFileCls.saveFile(file_pref + '_counts.html', 'html', text);
9260
9260
  });
9261
9261
 
9262
- me.myEventCls.onIds("#" + me.pre + "mn1_exportSelections", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9262
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportSelections", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9263
9263
  thisClass.setLogCmd("export all selections", false);
9264
9264
 
9265
9265
  thisClass.SetChainsAdvancedMenu();
@@ -9269,7 +9269,7 @@ class ClickMenu {
9269
9269
  ic.saveFileCls.saveFile(file_pref + '_selections.txt', 'text', [text]);
9270
9270
  });
9271
9271
 
9272
- me.myEventCls.onIds("#" + me.pre + "mn1_exportSelDetails", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9272
+ me.myEventCls.onIds("#" + me.pre + "mn1_exportSelDetails", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9273
9273
  thisClass.setLogCmd("export all selections with details", false);
9274
9274
 
9275
9275
  thisClass.SetChainsAdvancedMenu();
@@ -9280,32 +9280,32 @@ class ClickMenu {
9280
9280
  ic.saveFileCls.saveFile(file_pref + '_sel_details.txt', 'text', [text]);
9281
9281
  });
9282
9282
 
9283
- me.myEventCls.onIds(["#" + me.pre + "mn1_sharelink", "#" + me.pre + "tool_sharelink"], "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9283
+ me.myEventCls.onIds(["#" + me.pre + "mn1_sharelink", "#" + me.pre + "tool_sharelink"], "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9284
9284
  await ic.shareLinkCls.shareLink();
9285
9285
  });
9286
9286
 
9287
- me.myEventCls.onIds("#" + me.pre + "mn1_replayon", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9287
+ me.myEventCls.onIds("#" + me.pre + "mn1_replayon", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9288
9288
  await ic.resizeCanvasCls.replayon();
9289
9289
  thisClass.setLogCmd("replay on", true);
9290
9290
  });
9291
- me.myEventCls.onIds("#" + me.pre + "mn1_replayoff", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9291
+ me.myEventCls.onIds("#" + me.pre + "mn1_replayoff", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9292
9292
  await ic.resizeCanvasCls.replayoff();
9293
9293
  thisClass.setLogCmd("replay off", true);
9294
9294
  });
9295
9295
 
9296
- me.myEventCls.onIds("#" + me.pre + "mn1_menuall", "click", function(e) { me.icn3d; //e.preventDefault();
9296
+ me.myEventCls.onIds("#" + me.pre + "mn1_menuall", "click", function(e) { me.icn3d; e.preventDefault();
9297
9297
  me.htmlCls.shownMenus = me.hashUtilsCls.cloneHash(me.htmlCls.allMenus);
9298
9298
 
9299
9299
  thisClass.applyShownMenus();
9300
9300
  });
9301
9301
 
9302
- me.myEventCls.onIds("#" + me.pre + "mn1_menusimple", "click", function(e) { me.icn3d; //e.preventDefault();
9302
+ me.myEventCls.onIds("#" + me.pre + "mn1_menusimple", "click", function(e) { me.icn3d; e.preventDefault();
9303
9303
  me.htmlCls.shownMenus = me.hashUtilsCls.cloneHash(me.htmlCls.simpleMenus);
9304
9304
 
9305
9305
  thisClass.applyShownMenus();
9306
9306
  });
9307
9307
 
9308
- me.myEventCls.onIds("#" + me.pre + "mn1_menupref", "click", function(e) { me.icn3d; //e.preventDefault();
9308
+ me.myEventCls.onIds("#" + me.pre + "mn1_menupref", "click", function(e) { me.icn3d; e.preventDefault();
9309
9309
  me.htmlCls.dialogCls.openDlg('dl_menupref', 'Select Menus');
9310
9310
 
9311
9311
  thisClass.getHiddenMenusFromCache();
@@ -9313,7 +9313,7 @@ class ClickMenu {
9313
9313
  thisClass.displayShownMenus();
9314
9314
  });
9315
9315
 
9316
- me.myEventCls.onIds(["#" + me.pre + "apply_menupref", "#" + me.pre + "apply_menupref2"], "click", function(e) { me.icn3d; //e.preventDefault();
9316
+ me.myEventCls.onIds(["#" + me.pre + "apply_menupref", "#" + me.pre + "apply_menupref2"], "click", function(e) { me.icn3d; e.preventDefault();
9317
9317
  var checkboxes = document.querySelectorAll('form[name="' + me.pre + 'selmenu"] input:checked');
9318
9318
  me.htmlCls.shownMenus = {};
9319
9319
  for (var checkbox of checkboxes) {
@@ -9323,21 +9323,21 @@ class ClickMenu {
9323
9323
  thisClass.applyShownMenus();
9324
9324
  });
9325
9325
 
9326
- me.myEventCls.onIds(["#" + me.pre + "reset_menupref", "#" + me.pre + "reset_menupref2"], "click", function(e) { me.icn3d; //e.preventDefault();
9326
+ me.myEventCls.onIds(["#" + me.pre + "reset_menupref", "#" + me.pre + "reset_menupref2"], "click", function(e) { me.icn3d; e.preventDefault();
9327
9327
  me.htmlCls.shownMenus = me.hashUtilsCls.cloneHash(me.htmlCls.simpleMenus);
9328
9328
 
9329
9329
  thisClass.applyShownMenus();
9330
9330
  thisClass.displayShownMenus();
9331
9331
  });
9332
9332
 
9333
- me.myEventCls.onIds(["#" + me.pre + "reset_menupref_all", "#" + me.pre + "reset_menupref_all2"], "click", function(e) { me.icn3d; //e.preventDefault();
9333
+ me.myEventCls.onIds(["#" + me.pre + "reset_menupref_all", "#" + me.pre + "reset_menupref_all2"], "click", function(e) { me.icn3d; e.preventDefault();
9334
9334
  me.htmlCls.shownMenus = me.hashUtilsCls.cloneHash(me.htmlCls.allMenus);
9335
9335
 
9336
9336
  thisClass.applyShownMenus();
9337
9337
  thisClass.displayShownMenus();
9338
9338
  });
9339
9339
 
9340
- me.myEventCls.onIds(["#" + me.pre + "savepref", "#" + me.pre + "savepref2"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9340
+ me.myEventCls.onIds(["#" + me.pre + "savepref", "#" + me.pre + "savepref2"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
9341
9341
  let menuStr = '[';
9342
9342
 
9343
9343
  //var checkboxes = document.querySelectorAll('form[name="' + me.pre + 'selmenu"] input:checked');
@@ -9386,30 +9386,30 @@ class ClickMenu {
9386
9386
  }
9387
9387
  });
9388
9388
 
9389
- me.myEventCls.onIds("#" + me.pre + "mn1_menuloadpref", "click", function(e) { me.icn3d; //e.preventDefault();
9389
+ me.myEventCls.onIds("#" + me.pre + "mn1_menuloadpref", "click", function(e) { me.icn3d; e.preventDefault();
9390
9390
  me.htmlCls.dialogCls.openDlg('dl_menuloadpref', 'Please input the menu preference file');
9391
9391
  });
9392
9392
 
9393
9393
 
9394
- me.myEventCls.onIds("#" + me.pre + "mn1_link_structure", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9394
+ me.myEventCls.onIds("#" + me.pre + "mn1_link_structure", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9395
9395
  let url = ic.saveFileCls.getLinkToStructureSummary(true);
9396
9396
  let urlTarget = (ic.structures && Object.keys(ic.structures).length > 0) ? '_blank' : '_self';
9397
9397
  window.open(url, urlTarget);
9398
9398
  });
9399
9399
 
9400
- me.myEventCls.onIds("#" + me.pre + "mn1_alphafold", "click", function(e) { me.icn3d; //e.preventDefault();
9400
+ me.myEventCls.onIds("#" + me.pre + "mn1_alphafold", "click", function(e) { me.icn3d; e.preventDefault();
9401
9401
  let url = 'https://github.com/sokrypton/ColabFold';
9402
9402
  window.open(url, '_blank');
9403
9403
  });
9404
9404
 
9405
- me.myEventCls.onIds("#" + me.pre + "mn1_link_bind", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9405
+ me.myEventCls.onIds("#" + me.pre + "mn1_link_bind", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9406
9406
  let url = "https://www.ncbi.nlm.nih.gov/pccompound?LinkName=pccompound_structure&from_uid=" + ic.inputid;
9407
9407
  thisClass.setLogCmd("link to 3D protein structures bound to CID " + ic.inputid + ": " + url, false);
9408
9408
  let urlTarget = (ic.structures && Object.keys(ic.structures).length > 0) ? '_blank' : '_self';
9409
9409
  window.open(url, urlTarget);
9410
9410
  });
9411
9411
 
9412
- me.myEventCls.onIds("#" + me.pre + "mn1_link_vast", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9412
+ me.myEventCls.onIds("#" + me.pre + "mn1_link_vast", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9413
9413
  let url;
9414
9414
  if(ic.inputid === undefined) {
9415
9415
  url = "https://www.ncbi.nlm.nih.gov/pccompound?term=" + ic.molTitle;
@@ -9438,7 +9438,7 @@ class ClickMenu {
9438
9438
  window.open(url, urlTarget);
9439
9439
  });
9440
9440
 
9441
- me.myEventCls.onIds("#" + me.pre + "mn1_link_pubmed", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9441
+ me.myEventCls.onIds("#" + me.pre + "mn1_link_pubmed", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9442
9442
  let url;
9443
9443
  if(ic.inputid === undefined) {
9444
9444
  url = "https://www.ncbi.nlm.nih.gov/pubmed/?term=" + ic.molTitle;
@@ -9482,7 +9482,7 @@ class ClickMenu {
9482
9482
  }
9483
9483
  });
9484
9484
 
9485
- me.myEventCls.onIds("#" + me.pre + "mn1_link_protein", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9485
+ me.myEventCls.onIds("#" + me.pre + "mn1_link_protein", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9486
9486
  //ic.saveFileCls.setEntrezLinks('protein');
9487
9487
  let structArray = Object.keys(ic.structures);
9488
9488
  let chainArray = Object.keys(ic.chains);
@@ -9507,19 +9507,19 @@ class ClickMenu {
9507
9507
 
9508
9508
  let thisClass = this;
9509
9509
 
9510
- me.myEventCls.onIds(["#" + me.pre + "mn6_selectannotations", "#" + me.pre + "tool_selectannotations"], "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
9510
+ me.myEventCls.onIds(["#" + me.pre + "mn6_selectannotations", "#" + me.pre + "tool_selectannotations"], "click", async function(e) { let ic = me.icn3d; e.preventDefault();
9511
9511
  await ic.showAnnoCls.showAnnotations();
9512
9512
  thisClass.setLogCmd("view annotations", true);
9513
9513
  //thisClass.setLogCmd("window annotations", true);
9514
9514
  });
9515
9515
 
9516
- me.myEventCls.onIds("#" + me.pre + "mn2_selectall", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9516
+ me.myEventCls.onIds("#" + me.pre + "mn2_selectall", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9517
9517
  thisClass.setLogCmd("select all", true);
9518
9518
  ic.selectionCls.selectAll();
9519
9519
  ic.hlUpdateCls.removeHlAll();
9520
9520
  ic.drawCls.draw();
9521
9521
  });
9522
- me.myEventCls.onIds("#" + me.pre + "clearall", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9522
+ me.myEventCls.onIds("#" + me.pre + "clearall", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9523
9523
  thisClass.setLogCmd("clear all", true);
9524
9524
  ic.bSelectResidue = false;
9525
9525
  ic.selectionCls.selectAll();
@@ -9527,7 +9527,7 @@ class ClickMenu {
9527
9527
  ic.drawCls.draw();
9528
9528
  });
9529
9529
 
9530
- me.myEventCls.onIds("#" + me.pre + "mn2_selectdisplayed", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9530
+ me.myEventCls.onIds("#" + me.pre + "mn2_selectdisplayed", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9531
9531
  thisClass.setLogCmd("select displayed set", true);
9532
9532
  //ic.hAtoms = me.hashUtilsCls.cloneHash(ic.dAtoms);
9533
9533
  ic.hAtoms = me.hashUtilsCls.cloneHash(ic.viewSelectionAtoms);
@@ -9535,106 +9535,106 @@ class ClickMenu {
9535
9535
  //ic.drawCls.draw();
9536
9536
  });
9537
9537
 
9538
- me.myEventCls.onIds("#" + me.pre + "mn2_fullstru", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9538
+ me.myEventCls.onIds("#" + me.pre + "mn2_fullstru", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9539
9539
  thisClass.setLogCmd("show all", true);
9540
9540
  ic.selectionCls.showAll();
9541
9541
  });
9542
9542
 
9543
- me.myEventCls.onIds("#" + me.pre + "mn2_selectcomplement", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9543
+ me.myEventCls.onIds("#" + me.pre + "mn2_selectcomplement", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9544
9544
  if(Object.keys(ic.hAtoms).length < Object.keys(ic.atoms).length) {
9545
9545
  thisClass.setLogCmd("select complement", true);
9546
9546
  ic.resid2specCls.selectComplement();
9547
9547
  }
9548
9548
  });
9549
9549
 
9550
- me.myEventCls.onIds("#" + me.pre + "mn2_selectmainchains", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9550
+ me.myEventCls.onIds("#" + me.pre + "mn2_selectmainchains", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9551
9551
  thisClass.setLogCmd("select main chains", true);
9552
9552
  ic.selectionCls.selectMainChains();
9553
9553
  });
9554
9554
 
9555
- me.myEventCls.onIds("#" + me.pre + "mn2_selectsidechains", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9555
+ me.myEventCls.onIds("#" + me.pre + "mn2_selectsidechains", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9556
9556
  thisClass.setLogCmd("select side chains", true);
9557
9557
  ic.selectionCls.selectSideChains();
9558
9558
  });
9559
9559
 
9560
- me.myEventCls.onIds("#" + me.pre + "mn2_selectmainsidechains", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9560
+ me.myEventCls.onIds("#" + me.pre + "mn2_selectmainsidechains", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9561
9561
  thisClass.setLogCmd("select main side chains", true);
9562
9562
  ic.selectionCls.selectMainSideChains();
9563
9563
  });
9564
9564
 
9565
- me.myEventCls.onIds("#" + me.pre + "mn2_propPos", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9565
+ me.myEventCls.onIds("#" + me.pre + "mn2_propPos", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9566
9566
  thisClass.setLogCmd("select prop positive", true);
9567
9567
  ic.resid2specCls.selectProperty('positive');
9568
9568
  });
9569
- me.myEventCls.onIds("#" + me.pre + "mn2_propNeg", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9569
+ me.myEventCls.onIds("#" + me.pre + "mn2_propNeg", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9570
9570
  thisClass.setLogCmd("select prop negative", true);
9571
9571
  ic.resid2specCls.selectProperty('negative');
9572
9572
  });
9573
- me.myEventCls.onIds("#" + me.pre + "mn2_propHydro", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9573
+ me.myEventCls.onIds("#" + me.pre + "mn2_propHydro", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9574
9574
  thisClass.setLogCmd("select prop hydrophobic", true);
9575
9575
  ic.resid2specCls.selectProperty('hydrophobic');
9576
9576
  });
9577
- me.myEventCls.onIds("#" + me.pre + "mn2_propPolar", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9577
+ me.myEventCls.onIds("#" + me.pre + "mn2_propPolar", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9578
9578
  thisClass.setLogCmd("select prop polar", true);
9579
9579
  ic.resid2specCls.selectProperty('polar');
9580
9580
  });
9581
- me.myEventCls.onIds("#" + me.pre + "mn2_propBfactor", "click", function(e) { me.icn3d; //e.preventDefault();
9581
+ me.myEventCls.onIds("#" + me.pre + "mn2_propBfactor", "click", function(e) { me.icn3d; e.preventDefault();
9582
9582
  me.htmlCls.dialogCls.openDlg('dl_propbybfactor', 'Select residue based on B-factor/pLDDT');
9583
9583
  });
9584
- me.myEventCls.onIds("#" + me.pre + "mn2_propSolAcc", "click", function(e) { me.icn3d; //e.preventDefault();
9584
+ me.myEventCls.onIds("#" + me.pre + "mn2_propSolAcc", "click", function(e) { me.icn3d; e.preventDefault();
9585
9585
  me.htmlCls.dialogCls.openDlg('dl_propbypercentout', 'Select residue based on the percentage of solvent accessilbe surface area');
9586
9586
  });
9587
- me.myEventCls.onIds("#" + me.pre + "applypropbybfactor", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9587
+ me.myEventCls.onIds("#" + me.pre + "applypropbybfactor", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9588
9588
  let from = $("#" + me.pre + "minbfactor").val();
9589
9589
  let to = $("#" + me.pre + "maxbfactor").val();
9590
9590
  thisClass.setLogCmd("select prop b factor | " + from + '_' + to, true);
9591
9591
  ic.resid2specCls.selectProperty('b factor', from, to);
9592
9592
  });
9593
- me.myEventCls.onIds("#" + me.pre + "applypropbypercentout", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9593
+ me.myEventCls.onIds("#" + me.pre + "applypropbypercentout", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9594
9594
  let from = $("#" + me.pre + "minpercentout").val();
9595
9595
  let to = $("#" + me.pre + "maxpercentout").val();
9596
9596
  thisClass.setLogCmd("select prop percent out | " + from + '_' + to, true);
9597
9597
  ic.resid2specCls.selectProperty('percent out', from, to);
9598
9598
  });
9599
9599
 
9600
- me.myEventCls.onIds("#" + me.pre + "mn2_alignment", "click", function(e) { me.icn3d; //e.preventDefault();
9600
+ me.myEventCls.onIds("#" + me.pre + "mn2_alignment", "click", function(e) { me.icn3d; e.preventDefault();
9601
9601
  me.htmlCls.dialogCls.openDlg('dl_alignment', 'Select residues in aligned sequences');
9602
9602
  thisClass.setLogCmd("window aligned sequences", true);
9603
9603
  });
9604
9604
 
9605
- me.myEventCls.onIds("#" + me.pre + "mn1_window_table", "click", function(e) { me.icn3d; //e.preventDefault();
9605
+ me.myEventCls.onIds("#" + me.pre + "mn1_window_table", "click", function(e) { me.icn3d; e.preventDefault();
9606
9606
  me.htmlCls.dialogCls.openDlg('dl_allinteraction', 'Show interactions');
9607
9607
  thisClass.setLogCmd("window interaction table", true);
9608
9608
  });
9609
- me.myEventCls.onIds("#" + me.pre + "mn1_window_linegraph", "click", function(e) { me.icn3d; //e.preventDefault();
9609
+ me.myEventCls.onIds("#" + me.pre + "mn1_window_linegraph", "click", function(e) { me.icn3d; e.preventDefault();
9610
9610
  me.htmlCls.dialogCls.openDlg('dl_linegraph', 'Show interactions between two lines of residue nodes');
9611
9611
  thisClass.setLogCmd("window interaction graph", true);
9612
9612
  });
9613
- me.myEventCls.onIds("#" + me.pre + "mn1_window_scatterplot", "click", function(e) { me.icn3d; //e.preventDefault();
9613
+ me.myEventCls.onIds("#" + me.pre + "mn1_window_scatterplot", "click", function(e) { me.icn3d; e.preventDefault();
9614
9614
  me.htmlCls.dialogCls.openDlg('dl_scatterplot', 'Show interactions as map');
9615
9615
  thisClass.setLogCmd("window interaction scatterplot", true);
9616
9616
  });
9617
- me.myEventCls.onIds("#" + me.pre + "mn1_window_graph", "click", function(e) { me.icn3d; //e.preventDefault();
9617
+ me.myEventCls.onIds("#" + me.pre + "mn1_window_graph", "click", function(e) { me.icn3d; e.preventDefault();
9618
9618
  me.htmlCls.dialogCls.openDlg('dl_graph', 'Force-directed graph');
9619
9619
  thisClass.setLogCmd("window force-directed graph", true);
9620
9620
  });
9621
9621
 
9622
- me.myEventCls.onIds("#" + me.pre + "mn6_yournote", "click", function(e) { me.icn3d; //e.preventDefault();
9622
+ me.myEventCls.onIds("#" + me.pre + "mn6_yournote", "click", function(e) { me.icn3d; e.preventDefault();
9623
9623
  me.htmlCls.dialogCls.openDlg('dl_yournote', 'Your note about the current display');
9624
9624
  });
9625
9625
 
9626
- me.myEventCls.onIds("#" + me.pre + "applyyournote", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9626
+ me.myEventCls.onIds("#" + me.pre + "applyyournote", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9627
9627
  ic.yournote = $("#" + me.pre + "yournote").val();
9628
9628
  if(me.cfg.shownote) document.title = ic.yournote;
9629
9629
  if(!me.cfg.notebook) dialog.dialog( "close" );
9630
9630
  thisClass.setLogCmd('your note | ' + ic.yournote, true);
9631
9631
  });
9632
9632
 
9633
- me.myEventCls.onIds("#" + me.pre + "mn2_command", "click", function(e) { me.icn3d; //e.preventDefault();
9633
+ me.myEventCls.onIds("#" + me.pre + "mn2_command", "click", function(e) { me.icn3d; e.preventDefault();
9634
9634
  me.htmlCls.dialogCls.openDlg('dl_advanced2', 'Select by specification');
9635
9635
  });
9636
9636
 
9637
- me.myEventCls.onIds(["#" + me.pre + "mn2_definedsets", "#" + me.pre + "definedsets", "#" + me.pre + "definedsets2", "#" + me.pre + "tool_definedsets"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9637
+ me.myEventCls.onIds(["#" + me.pre + "mn2_definedsets", "#" + me.pre + "definedsets", "#" + me.pre + "definedsets2", "#" + me.pre + "tool_definedsets"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
9638
9638
  ic.definedSetsCls.showSets();
9639
9639
  thisClass.setLogCmd('defined sets', true);
9640
9640
  //thisClass.setLogCmd('window defined sets', true);
@@ -9653,7 +9653,7 @@ class ClickMenu {
9653
9653
  });
9654
9654
 
9655
9655
 
9656
- me.myEventCls.onIds("#" + me.pre + "mn2_pkNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9656
+ me.myEventCls.onIds("#" + me.pre + "mn2_pkNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9657
9657
  ic.pk = 0;
9658
9658
  ic.opts['pk'] = 'no';
9659
9659
  thisClass.setLogCmd('set pk off', true);
@@ -9661,50 +9661,50 @@ class ClickMenu {
9661
9661
  ic.hlObjectsCls.removeHlObjects();
9662
9662
  });
9663
9663
 
9664
- me.myEventCls.onIds("#" + me.pre + "mn2_pkYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9664
+ me.myEventCls.onIds("#" + me.pre + "mn2_pkYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9665
9665
  ic.pk = 1;
9666
9666
  ic.opts['pk'] = 'atom';
9667
9667
  thisClass.setLogCmd('set pk atom', true);
9668
9668
  });
9669
9669
 
9670
- me.myEventCls.onIds("#" + me.pre + "mn2_pkResidue", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9670
+ me.myEventCls.onIds("#" + me.pre + "mn2_pkResidue", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9671
9671
  ic.pk = 2;
9672
9672
  ic.opts['pk'] = 'residue';
9673
9673
  thisClass.setLogCmd('set pk residue', true);
9674
9674
  });
9675
9675
 
9676
- me.myEventCls.onIds("#" + me.pre + "mn2_pkStrand", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9676
+ me.myEventCls.onIds("#" + me.pre + "mn2_pkStrand", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9677
9677
  ic.pk = 3;
9678
9678
  ic.opts['pk'] = 'strand';
9679
9679
  thisClass.setLogCmd('set pk strand', true);
9680
9680
  });
9681
9681
 
9682
- me.myEventCls.onIds("#" + me.pre + "mn2_pkDomain", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9682
+ me.myEventCls.onIds("#" + me.pre + "mn2_pkDomain", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9683
9683
  ic.pk = 4;
9684
9684
  ic.opts['pk'] = 'domain';
9685
9685
  thisClass.setLogCmd('set pk domain', true);
9686
9686
  });
9687
9687
 
9688
- me.myEventCls.onIds("#" + me.pre + "mn2_pkChain", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9688
+ me.myEventCls.onIds("#" + me.pre + "mn2_pkChain", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9689
9689
  ic.pk = 5;
9690
9690
  ic.opts['pk'] = 'chain';
9691
9691
  thisClass.setLogCmd('set pk chain', true);
9692
9692
  });
9693
9693
 
9694
- me.myEventCls.onIds("#" + me.pre + "adjustmem", "click", function(e) { me.icn3d; //e.preventDefault();
9694
+ me.myEventCls.onIds("#" + me.pre + "adjustmem", "click", function(e) { me.icn3d; e.preventDefault();
9695
9695
  me.htmlCls.dialogCls.openDlg('dl_adjustmem', 'Adjust the Z-axis positions of the membrane');
9696
9696
  });
9697
9697
 
9698
- me.myEventCls.onIds("#" + me.pre + "togglemem", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9698
+ me.myEventCls.onIds("#" + me.pre + "togglemem", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9699
9699
  ic.selectionCls.toggleMembrane();
9700
9700
  thisClass.setLogCmd('toggle membrane', true);
9701
9701
  });
9702
9702
 
9703
- me.myEventCls.onIds("#" + me.pre + "selectplane", "click", function(e) { me.icn3d; //e.preventDefault();
9703
+ me.myEventCls.onIds("#" + me.pre + "selectplane", "click", function(e) { me.icn3d; e.preventDefault();
9704
9704
  me.htmlCls.dialogCls.openDlg('dl_selectplane', 'Select a region between two planes');
9705
9705
  });
9706
9706
 
9707
- me.myEventCls.onIds(["#" + me.pre + "mn2_aroundsphere", "#" + me.pre + "tool_aroundsphere"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9707
+ me.myEventCls.onIds(["#" + me.pre + "mn2_aroundsphere", "#" + me.pre + "tool_aroundsphere"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
9708
9708
  thisClass.SetChainsAdvancedMenu();
9709
9709
 
9710
9710
  let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
@@ -9721,7 +9721,7 @@ class ClickMenu {
9721
9721
  $("#" + me.pre + "atomsCustomSphere2").resizable();
9722
9722
  });
9723
9723
 
9724
- me.myEventCls.onIds(["#" + me.pre + "mn2_select_chain", "#" + me.pre + "definedSets"], "click", function(e) { me.icn3d; //e.preventDefault();
9724
+ me.myEventCls.onIds(["#" + me.pre + "mn2_select_chain", "#" + me.pre + "definedSets"], "click", function(e) { me.icn3d; e.preventDefault();
9725
9725
  me.htmlCls.dialogCls.openDlg('dl_select_chain', 'Select Structure/Chain/Custom Selection');
9726
9726
  });
9727
9727
 
@@ -9732,242 +9732,242 @@ class ClickMenu {
9732
9732
 
9733
9733
  let thisClass = this;
9734
9734
  // mn 3
9735
- me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsRibbon","#" + me.pre + "tool_proteinsRibbon"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9735
+ me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsRibbon","#" + me.pre + "tool_proteinsRibbon"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
9736
9736
  ic.setOptionCls.setStyle('proteins', 'ribbon');
9737
9737
  thisClass.setLogCmd('style proteins ribbon', true);
9738
9738
  });
9739
9739
 
9740
- me.myEventCls.onIds("#" + me.pre + "mn3_proteinsStrand", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9740
+ me.myEventCls.onIds("#" + me.pre + "mn3_proteinsStrand", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9741
9741
  ic.setOptionCls.setStyle('proteins', 'strand');
9742
9742
  thisClass.setLogCmd('style proteins strand', true);
9743
9743
  });
9744
9744
 
9745
- me.myEventCls.onIds("#" + me.pre + "mn3_proteinsCylinder", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9745
+ me.myEventCls.onIds("#" + me.pre + "mn3_proteinsCylinder", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9746
9746
  ic.setOptionCls.setStyle('proteins', 'cylinder and plate');
9747
9747
  thisClass.setLogCmd('style proteins cylinder and plate', true);
9748
9748
  });
9749
9749
 
9750
- me.myEventCls.onIds("#" + me.pre + "mn3_proteinsSchematic", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9750
+ me.myEventCls.onIds("#" + me.pre + "mn3_proteinsSchematic", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9751
9751
  ic.setOptionCls.setStyle('proteins', 'schematic');
9752
9752
  thisClass.setLogCmd('style proteins schematic', true);
9753
9753
  });
9754
9754
 
9755
- me.myEventCls.onIds("#" + me.pre + "mn3_proteinsCalpha", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9755
+ me.myEventCls.onIds("#" + me.pre + "mn3_proteinsCalpha", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9756
9756
  ic.setOptionCls.setStyle('proteins', 'c alpha trace');
9757
9757
  thisClass.setLogCmd('style proteins c alpha trace', true);
9758
9758
  });
9759
9759
 
9760
- me.myEventCls.onIds("#" + me.pre + "mn3_proteinsBackbone", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9760
+ me.myEventCls.onIds("#" + me.pre + "mn3_proteinsBackbone", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9761
9761
  ic.setOptionCls.setStyle('proteins', 'backbone');
9762
9762
  thisClass.setLogCmd('style proteins backbone', true);
9763
9763
  });
9764
9764
 
9765
- me.myEventCls.onIds("#" + me.pre + "mn3_proteinsBfactor", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9765
+ me.myEventCls.onIds("#" + me.pre + "mn3_proteinsBfactor", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9766
9766
  ic.setOptionCls.setStyle('proteins', 'b factor tube');
9767
9767
  thisClass.setLogCmd('style proteins b factor tube', true);
9768
9768
  });
9769
9769
 
9770
- me.myEventCls.onIds("#" + me.pre + "mn3_proteinsLines", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9770
+ me.myEventCls.onIds("#" + me.pre + "mn3_proteinsLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9771
9771
  ic.setOptionCls.setStyle('proteins', 'lines');
9772
9772
  thisClass.setLogCmd('style proteins lines', true);
9773
9773
  });
9774
9774
 
9775
- me.myEventCls.onIds("#" + me.pre + "mn3_proteinsStick", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9775
+ me.myEventCls.onIds("#" + me.pre + "mn3_proteinsStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9776
9776
  ic.setOptionCls.setStyle('proteins', 'stick');
9777
9777
  thisClass.setLogCmd('style proteins stick', true);
9778
9778
  });
9779
9779
 
9780
- me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsBallstick", "#" + me.pre + "tool_proteinsBallstick"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9780
+ me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsBallstick", "#" + me.pre + "tool_proteinsBallstick"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
9781
9781
  ic.setOptionCls.setStyle('proteins', 'ball and stick');
9782
9782
  thisClass.setLogCmd('style proteins ball and stick', true);
9783
9783
  });
9784
9784
 
9785
- me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsSphere", "#" + me.pre + "tool_proteinsSphere"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9785
+ me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsSphere", "#" + me.pre + "tool_proteinsSphere"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
9786
9786
  ic.setOptionCls.setStyle('proteins', 'sphere');
9787
9787
  thisClass.setLogCmd('style proteins sphere', true);
9788
9788
  });
9789
9789
 
9790
- me.myEventCls.onIds("#" + me.pre + "mn3_proteinsNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9790
+ me.myEventCls.onIds("#" + me.pre + "mn3_proteinsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9791
9791
  ic.setOptionCls.setStyle('proteins', 'nothing');
9792
9792
  thisClass.setLogCmd('style proteins nothing', true);
9793
9793
  });
9794
9794
 
9795
- me.myEventCls.onIds("#" + me.pre + "mn3_sidecLines", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9795
+ me.myEventCls.onIds("#" + me.pre + "mn3_sidecLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9796
9796
  ic.setOptionCls.setStyle('sidec', 'lines2');
9797
9797
  thisClass.setLogCmd('style sidec lines2', true);
9798
9798
  });
9799
9799
 
9800
- me.myEventCls.onIds("#" + me.pre + "mn3_sidecStick", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9800
+ me.myEventCls.onIds("#" + me.pre + "mn3_sidecStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9801
9801
  ic.setOptionCls.setStyle('sidec', 'stick2');
9802
9802
  thisClass.setLogCmd('style sidec stick2', true);
9803
9803
  });
9804
9804
 
9805
- me.myEventCls.onIds("#" + me.pre + "mn3_sidecBallstick", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9805
+ me.myEventCls.onIds("#" + me.pre + "mn3_sidecBallstick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9806
9806
  ic.setOptionCls.setStyle('sidec', 'ball and stick2');
9807
9807
  thisClass.setLogCmd('style sidec ball and stick2', true);
9808
9808
  });
9809
9809
 
9810
- me.myEventCls.onIds("#" + me.pre + "mn3_sidecSphere", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9810
+ me.myEventCls.onIds("#" + me.pre + "mn3_sidecSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9811
9811
  ic.setOptionCls.setStyle('sidec', 'sphere2');
9812
9812
  thisClass.setLogCmd('style sidec sphere2', true);
9813
9813
  });
9814
9814
 
9815
- me.myEventCls.onIds("#" + me.pre + "mn3_sidecNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9815
+ me.myEventCls.onIds("#" + me.pre + "mn3_sidecNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9816
9816
  ic.setOptionCls.setStyle('sidec', 'nothing');
9817
9817
  thisClass.setLogCmd('style sidec nothing', true);
9818
9818
  });
9819
9819
 
9820
- me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseLines", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9820
+ me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9821
9821
  ic.setOptionCls.setStyle('ntbase', 'lines2');
9822
9822
  thisClass.setLogCmd('style ntbase lines2', true);
9823
9823
  });
9824
9824
 
9825
- me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseStick", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9825
+ me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9826
9826
  ic.setOptionCls.setStyle('ntbase', 'stick2');
9827
9827
  thisClass.setLogCmd('style ntbase stick2', true);
9828
9828
  });
9829
9829
 
9830
- me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseBallstick", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9830
+ me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseBallstick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9831
9831
  ic.setOptionCls.setStyle('ntbase', 'ball and stick2');
9832
9832
  thisClass.setLogCmd('style ntbase ball and stick2', true);
9833
9833
  });
9834
9834
 
9835
- me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseSphere", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9835
+ me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9836
9836
  ic.setOptionCls.setStyle('ntbase', 'sphere2');
9837
9837
  thisClass.setLogCmd('style ntbase sphere2', true);
9838
9838
  });
9839
9839
 
9840
- me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9840
+ me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9841
9841
  ic.setOptionCls.setStyle('ntbase', 'nothing');
9842
9842
  thisClass.setLogCmd('style ntbase nothing', true);
9843
9843
  });
9844
9844
 
9845
- me.myEventCls.onIds("#" + me.pre + "mn3_nuclCartoon", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9845
+ me.myEventCls.onIds("#" + me.pre + "mn3_nuclCartoon", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9846
9846
  ic.setOptionCls.setStyle('nucleotides', 'nucleotide cartoon');
9847
9847
  thisClass.setLogCmd('style nucleotides nucleotide cartoon', true);
9848
9848
  });
9849
9849
 
9850
- me.myEventCls.onIds("#" + me.pre + "mn3_nuclBackbone", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9850
+ me.myEventCls.onIds("#" + me.pre + "mn3_nuclBackbone", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9851
9851
  ic.setOptionCls.setStyle('nucleotides', 'backbone');
9852
9852
  thisClass.setLogCmd('style nucleotides backbone', true);
9853
9853
  });
9854
9854
 
9855
- me.myEventCls.onIds("#" + me.pre + "mn3_nuclSchematic", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9855
+ me.myEventCls.onIds("#" + me.pre + "mn3_nuclSchematic", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9856
9856
  ic.setOptionCls.setStyle('nucleotides', 'schematic');
9857
9857
  thisClass.setLogCmd('style nucleotides schematic', true);
9858
9858
  });
9859
9859
 
9860
- me.myEventCls.onIds("#" + me.pre + "mn3_nuclPhos", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9860
+ me.myEventCls.onIds("#" + me.pre + "mn3_nuclPhos", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9861
9861
  ic.setOptionCls.setStyle('nucleotides', 'o3 trace');
9862
9862
  thisClass.setLogCmd('style nucleotides o3 trace', true);
9863
9863
  });
9864
9864
 
9865
- me.myEventCls.onIds("#" + me.pre + "mn3_nuclLines", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9865
+ me.myEventCls.onIds("#" + me.pre + "mn3_nuclLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9866
9866
  ic.setOptionCls.setStyle('nucleotides', 'lines');
9867
9867
  thisClass.setLogCmd('style nucleotides lines', true);
9868
9868
  });
9869
9869
 
9870
- me.myEventCls.onIds("#" + me.pre + "mn3_nuclStick", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9870
+ me.myEventCls.onIds("#" + me.pre + "mn3_nuclStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9871
9871
  ic.setOptionCls.setStyle('nucleotides', 'stick');
9872
9872
  thisClass.setLogCmd('style nucleotides stick', true);
9873
9873
  });
9874
9874
 
9875
- me.myEventCls.onIds("#" + me.pre + "mn3_nuclBallstick", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9875
+ me.myEventCls.onIds("#" + me.pre + "mn3_nuclBallstick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9876
9876
  ic.setOptionCls.setStyle('nucleotides', 'ball and stick');
9877
9877
  thisClass.setLogCmd('style nucleotides ball and stick', true);
9878
9878
  });
9879
9879
 
9880
- me.myEventCls.onIds("#" + me.pre + "mn3_nuclSphere", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9880
+ me.myEventCls.onIds("#" + me.pre + "mn3_nuclSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9881
9881
  ic.setOptionCls.setStyle('nucleotides', 'sphere');
9882
9882
  thisClass.setLogCmd('style nucleotides sphere', true);
9883
9883
  });
9884
9884
 
9885
- me.myEventCls.onIds("#" + me.pre + "mn3_nuclNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9885
+ me.myEventCls.onIds("#" + me.pre + "mn3_nuclNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9886
9886
  ic.setOptionCls.setStyle('nucleotides', 'nothing');
9887
9887
  thisClass.setLogCmd('style nucleotides nothing', true);
9888
9888
  });
9889
9889
 
9890
- me.myEventCls.onIds("#" + me.pre + "mn3_ligLines", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9890
+ me.myEventCls.onIds("#" + me.pre + "mn3_ligLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9891
9891
  ic.setOptionCls.setStyle('chemicals', 'lines');
9892
9892
  thisClass.setLogCmd('style chemicals lines', true);
9893
9893
  });
9894
9894
 
9895
- me.myEventCls.onIds("#" + me.pre + "mn3_ligStick", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9895
+ me.myEventCls.onIds("#" + me.pre + "mn3_ligStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9896
9896
  ic.setOptionCls.setStyle('chemicals', 'stick');
9897
9897
  thisClass.setLogCmd('style chemicals stick', true);
9898
9898
  });
9899
9899
 
9900
- me.myEventCls.onIds("#" + me.pre + "mn3_ligBallstick", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9900
+ me.myEventCls.onIds("#" + me.pre + "mn3_ligBallstick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9901
9901
  ic.setOptionCls.setStyle('chemicals', 'ball and stick');
9902
9902
  thisClass.setLogCmd('style chemicals ball and stick', true);
9903
9903
  });
9904
9904
 
9905
- me.myEventCls.onIds("#" + me.pre + "mn3_ligSchematic", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9905
+ me.myEventCls.onIds("#" + me.pre + "mn3_ligSchematic", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9906
9906
  ic.setOptionCls.setStyle('chemicals', 'schematic');
9907
9907
  thisClass.setLogCmd('style chemicals schematic', true);
9908
9908
  });
9909
9909
 
9910
- me.myEventCls.onIds("#" + me.pre + "mn3_ligSphere", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9910
+ me.myEventCls.onIds("#" + me.pre + "mn3_ligSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9911
9911
  ic.setOptionCls.setStyle('chemicals', 'sphere');
9912
9912
  thisClass.setLogCmd('style chemicals sphere', true);
9913
9913
  });
9914
9914
 
9915
- me.myEventCls.onIds("#" + me.pre + "mn3_ligNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9915
+ me.myEventCls.onIds("#" + me.pre + "mn3_ligNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9916
9916
  ic.setOptionCls.setStyle('chemicals', 'nothing');
9917
9917
  thisClass.setLogCmd('style chemicals nothing', true);
9918
9918
  });
9919
9919
 
9920
9920
 
9921
- me.myEventCls.onIds("#" + me.pre + "mn3_glycansCartYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9921
+ me.myEventCls.onIds("#" + me.pre + "mn3_glycansCartYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9922
9922
  ic.bGlycansCartoon = true;
9923
9923
  ic.drawCls.draw();
9924
9924
  thisClass.setLogCmd('glycans cartoon yes', true);
9925
9925
  });
9926
- me.myEventCls.onIds("#" + me.pre + "mn3_glycansCartNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9926
+ me.myEventCls.onIds("#" + me.pre + "mn3_glycansCartNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9927
9927
  ic.bGlycansCartoon = false;
9928
9928
  ic.drawCls.draw();
9929
9929
  thisClass.setLogCmd('glycans cartoon no', true);
9930
9930
  });
9931
9931
 
9932
9932
 
9933
- me.myEventCls.onIds("#" + me.pre + "mn3_hydrogensYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9933
+ me.myEventCls.onIds("#" + me.pre + "mn3_hydrogensYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9934
9934
  ic.showInterCls.showHydrogens();
9935
9935
  ic.drawCls.draw();
9936
9936
  thisClass.setLogCmd('hydrogens', true);
9937
9937
  });
9938
9938
 
9939
- me.myEventCls.onIds("#" + me.pre + "mn3_hydrogensNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9939
+ me.myEventCls.onIds("#" + me.pre + "mn3_hydrogensNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9940
9940
  ic.showInterCls.hideHydrogens();
9941
9941
  ic.drawCls.draw();
9942
9942
  thisClass.setLogCmd('set hydrogens off', true);
9943
9943
  });
9944
9944
 
9945
- me.myEventCls.onIds("#" + me.pre + "mn3_ionsSphere", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9945
+ me.myEventCls.onIds("#" + me.pre + "mn3_ionsSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9946
9946
  ic.setOptionCls.setStyle('ions', 'sphere');
9947
9947
  thisClass.setLogCmd('style ions sphere', true);
9948
9948
  });
9949
9949
 
9950
- me.myEventCls.onIds("#" + me.pre + "mn3_ionsDot", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9950
+ me.myEventCls.onIds("#" + me.pre + "mn3_ionsDot", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9951
9951
  ic.setOptionCls.setStyle('ions', 'dot');
9952
9952
  thisClass.setLogCmd('style ions dot', true);
9953
9953
  });
9954
9954
 
9955
- me.myEventCls.onIds("#" + me.pre + "mn3_ionsNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9955
+ me.myEventCls.onIds("#" + me.pre + "mn3_ionsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9956
9956
  ic.setOptionCls.setStyle('ions', 'nothing');
9957
9957
  thisClass.setLogCmd('style ions nothing', true);
9958
9958
  });
9959
9959
 
9960
- me.myEventCls.onIds("#" + me.pre + "mn3_waterSphere", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9960
+ me.myEventCls.onIds("#" + me.pre + "mn3_waterSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9961
9961
  ic.setOptionCls.setStyle('water', 'sphere');
9962
9962
  thisClass.setLogCmd('style water sphere', true);
9963
9963
  });
9964
9964
 
9965
- me.myEventCls.onIds("#" + me.pre + "mn3_waterDot", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9965
+ me.myEventCls.onIds("#" + me.pre + "mn3_waterDot", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9966
9966
  ic.setOptionCls.setStyle('water', 'dot');
9967
9967
  thisClass.setLogCmd('style water dot', true);
9968
9968
  });
9969
9969
 
9970
- me.myEventCls.onIds("#" + me.pre + "mn3_waterNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9970
+ me.myEventCls.onIds("#" + me.pre + "mn3_waterNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9971
9971
  ic.setOptionCls.setStyle('water', 'nothing');
9972
9972
  thisClass.setLogCmd('style water nothing', true);
9973
9973
  });
@@ -9979,16 +9979,16 @@ class ClickMenu {
9979
9979
 
9980
9980
  let thisClass = this;
9981
9981
  // mn 4
9982
- me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrum", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9982
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrum", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9983
9983
  ic.setOptionCls.setOption('color', 'spectrum');
9984
9984
  thisClass.setLogCmd('color spectrum', true);
9985
9985
  });
9986
- me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumChain", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9986
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumChain", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9987
9987
  ic.setOptionCls.setOption('color', 'spectrum for chains');
9988
9988
  thisClass.setLogCmd('color spectrum for chains', true);
9989
9989
  });
9990
9990
 
9991
- me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumAcrossSets", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
9991
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumAcrossSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
9992
9992
  thisClass.SetChainsAdvancedMenu();
9993
9993
  let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
9994
9994
  if($("#" + me.pre + "atomsCustomColorSpectrumAcross").length) {
@@ -9999,7 +9999,7 @@ class ClickMenu {
9999
9999
  $("#" + me.pre + "atomsCustomColorSpectrumAcross").resizable();
10000
10000
  });
10001
10001
 
10002
- me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumSets", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10002
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10003
10003
  thisClass.SetChainsAdvancedMenu();
10004
10004
  let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
10005
10005
  if($("#" + me.pre + "atomsCustomColorSpectrum").length) {
@@ -10010,7 +10010,7 @@ class ClickMenu {
10010
10010
  $("#" + me.pre + "atomsCustomColorSpectrum").resizable();
10011
10011
  });
10012
10012
 
10013
- me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbowAcrossSets", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10013
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbowAcrossSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10014
10014
  thisClass.SetChainsAdvancedMenu();
10015
10015
  let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
10016
10016
  if($("#" + me.pre + "atomsCustomColorRainbowAcross").length) {
@@ -10021,7 +10021,7 @@ class ClickMenu {
10021
10021
  $("#" + me.pre + "atomsCustomColorRainbowAcross").resizable();
10022
10022
  });
10023
10023
 
10024
- me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbowSets", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10024
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbowSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10025
10025
  thisClass.SetChainsAdvancedMenu();
10026
10026
  let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
10027
10027
  if($("#" + me.pre + "atomsCustomColorRainbow").length) {
@@ -10032,59 +10032,60 @@ class ClickMenu {
10032
10032
  $("#" + me.pre + "atomsCustomColorRainbow").resizable();
10033
10033
  });
10034
10034
 
10035
- me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbow", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10035
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbow", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10036
10036
  ic.setOptionCls.setOption('color', 'rainbow');
10037
+
10037
10038
  thisClass.setLogCmd('color rainbow', true);
10038
10039
  });
10039
- me.myEventCls.onIds(["#" + me.pre + "mn4_clrRainbowChain", "#" + me.pre + "tool_clrRainbowChain"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10040
+ me.myEventCls.onIds(["#" + me.pre + "mn4_clrRainbowChain", "#" + me.pre + "tool_clrRainbowChain"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10040
10041
  ic.setOptionCls.setOption('color', 'rainbow for chains');
10041
10042
  thisClass.setLogCmd('color rainbow for chains', true);
10042
10043
  });
10043
10044
 
10044
- me.myEventCls.onIds(["#" + me.pre + "mn4_clrChain", "#" + me.pre + "tool_clrChain"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10045
+ me.myEventCls.onIds(["#" + me.pre + "mn4_clrChain", "#" + me.pre + "tool_clrChain"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10045
10046
  ic.setOptionCls.setOption('color', 'chain');
10046
10047
  thisClass.setLogCmd('color chain', true);
10047
10048
  });
10048
- me.myEventCls.onIds("#" + me.pre + "mn4_clrStructure", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10049
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrStructure", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10049
10050
  ic.setOptionCls.setOption('color', 'structure');
10050
10051
  thisClass.setLogCmd('color structure', true);
10051
10052
  });
10052
10053
 
10053
- me.myEventCls.onIds("#" + me.pre + "mn4_clrdomain", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10054
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrdomain", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10054
10055
  ic.setOptionCls.setOption('color', 'domain');
10055
10056
  thisClass.setLogCmd('color domain', true);
10056
10057
  });
10057
10058
 
10058
- me.myEventCls.onIds("#" + me.pre + "mn4_clrsets", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10059
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrsets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10059
10060
  ic.setOptionCls.setOption('color', 'defined sets');
10060
10061
  thisClass.setLogCmd('color defined sets', true);
10061
10062
  });
10062
10063
 
10063
10064
 
10064
- me.myEventCls.onIds(["#" + me.pre + "mn4_clrSSGreen", "#" + me.pre + "tool_clrSSGreen"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10065
+ me.myEventCls.onIds(["#" + me.pre + "mn4_clrSSGreen", "#" + me.pre + "tool_clrSSGreen"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10065
10066
  ic.sheetcolor = 'green';
10066
10067
  ic.setOptionCls.setOption('color', 'secondary structure green');
10067
10068
  thisClass.setLogCmd('color secondary structure green', true);
10068
10069
  });
10069
10070
 
10070
- me.myEventCls.onIds("#" + me.pre + "mn4_clrSSYellow", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10071
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrSSYellow", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10071
10072
  ic.sheetcolor = 'yellow';
10072
10073
  ic.setOptionCls.setOption('color', 'secondary structure yellow');
10073
10074
  thisClass.setLogCmd('color secondary structure yellow', true);
10074
10075
  });
10075
10076
 
10076
- me.myEventCls.onIds("#" + me.pre + "mn4_clrSSSpectrum", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10077
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrSSSpectrum", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10077
10078
  ic.setOptionCls.setOption('color', 'secondary structure spectrum');
10078
10079
  thisClass.setLogCmd('color secondary structure spectrum', true);
10079
10080
  });
10080
10081
 
10081
- me.myEventCls.onIds("#" + me.pre + "mn4_clrResidue", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10082
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrResidue", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10082
10083
  //ic.legendClick = 2;
10083
10084
  ic.setOptionCls.setOption('color', 'residue');
10084
10085
  thisClass.setLogCmd('color residue', true);
10085
10086
  });
10086
10087
 
10087
- me.myEventCls.onIds("#" + me.pre + "mn4_clrResidueCustom", "click", function(e) { me.icn3d; //e.preventDefault();
10088
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrResidueCustom", "click", function(e) { me.icn3d; e.preventDefault();
10088
10089
  //ic.legendClick = 2;
10089
10090
  me.htmlCls.dialogCls.openDlg('dl_rescolorfile', 'Please input the file on residue colors');
10090
10091
  });
@@ -10130,12 +10131,12 @@ class ClickMenu {
10130
10131
  ic.addTrackCls.setCustomFile('color', ic.startColor, ic.midColor, ic.endColor);
10131
10132
  });
10132
10133
 
10133
- me.myEventCls.onIds("#" + me.pre + "mn6_customref", "click", function(e) { me.icn3d; //e.preventDefault();
10134
+ me.myEventCls.onIds("#" + me.pre + "mn6_customref", "click", function(e) { me.icn3d; e.preventDefault();
10134
10135
 
10135
10136
  me.htmlCls.dialogCls.openDlg('dl_customref', 'Set custom reference numbers');
10136
10137
  });
10137
10138
 
10138
- me.myEventCls.onIds("#" + me.pre + "reload_customreffile", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10139
+ me.myEventCls.onIds("#" + me.pre + "reload_customreffile", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10139
10140
 
10140
10141
  if(!me.cfg.notebook) dialog.dialog( "close" );
10141
10142
 
@@ -10172,82 +10173,82 @@ class ClickMenu {
10172
10173
  ic.addTrackCls.setCustomFile('tube');
10173
10174
  });
10174
10175
 
10175
- me.myEventCls.onIds("#" + me.pre + "mn4_clrCharge", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10176
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrCharge", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10176
10177
  //ic.legendClick = 3;
10177
10178
  ic.setOptionCls.setOption('color', 'charge');
10178
10179
  thisClass.setLogCmd('color charge', true);
10179
10180
  });
10180
10181
 
10181
- me.myEventCls.onIds("#" + me.pre + "mn4_clrHydrophobic", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10182
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrHydrophobic", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10182
10183
  //ic.legendClick = 4;
10183
10184
  ic.setOptionCls.setOption('color', 'hydrophobic');
10184
10185
  thisClass.setLogCmd('color hydrophobic', true);
10185
10186
  });
10186
10187
 
10187
- me.myEventCls.onIds("#" + me.pre + "mn4_clrNormalizedHP", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10188
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrNormalizedHP", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10188
10189
  //ic.legendClick = 4;
10189
10190
  ic.setOptionCls.setOption('color', 'normalized hydrophobic');
10190
10191
  thisClass.setLogCmd('color normalized hydrophobic', true);
10191
10192
  });
10192
10193
 
10193
10194
 
10194
- me.myEventCls.onIds(["#" + me.pre + "mn4_clrAtom", "#" + me.pre + "tool_clrAtom"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10195
+ me.myEventCls.onIds(["#" + me.pre + "mn4_clrAtom", "#" + me.pre + "tool_clrAtom"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10195
10196
  //ic.legendClick = 1;
10196
10197
  ic.setOptionCls.setOption('color', 'atom');
10197
10198
  thisClass.setLogCmd('color atom', true);
10198
10199
  });
10199
10200
 
10200
- me.myEventCls.onIds("#" + me.pre + "mn4_clrBfactor", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10201
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrBfactor", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10201
10202
  //ic.legendClick = 5;
10202
10203
  ic.setOptionCls.setOption('color', 'b factor');
10203
10204
  thisClass.setLogCmd('color b factor', true);
10204
10205
  });
10205
10206
 
10206
- me.myEventCls.onIds("#" + me.pre + "mn4_clrConfidence", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10207
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrConfidence", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10207
10208
  //ic.legendClick = 6;
10208
10209
  ic.setOptionCls.setOption('color', 'confidence');
10209
10210
  thisClass.setLogCmd('color confidence', true);
10210
10211
  });
10211
10212
 
10212
- me.myEventCls.onIds("#" + me.pre + "mn4_clrIgstrand", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10213
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrIgstrand", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10213
10214
  //ic.legendClick = 6;
10214
10215
  ic.setOptionCls.setOption('color', 'ig strand');
10215
10216
  thisClass.setLogCmd('color ig strand', true);
10216
10217
  });
10217
10218
 
10218
- me.myEventCls.onIds("#" + me.pre + "mn4_clrIgproto", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10219
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrIgproto", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10219
10220
  //ic.legendClick = 6;
10220
10221
  ic.setOptionCls.setOption('color', 'ig protodomain');
10221
10222
  thisClass.setLogCmd('color ig protodomain', true);
10222
10223
  });
10223
10224
 
10224
10225
 
10225
- me.myEventCls.onIds("#" + me.pre + "mn4_clrArea", "click", function(e) { me.icn3d; //e.preventDefault();
10226
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrArea", "click", function(e) { me.icn3d; e.preventDefault();
10226
10227
  me.htmlCls.dialogCls.openDlg('dl_colorbyarea', "Color based on residue's solvent accessibility");
10227
10228
  });
10228
- me.myEventCls.onIds("#" + me.pre + "applycolorbyarea", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10229
+ me.myEventCls.onIds("#" + me.pre + "applycolorbyarea", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10229
10230
  ic.midpercent = $("#" + me.pre + 'midpercent').val();
10230
10231
  ic.setOptionCls.setOption('color', 'area');
10231
10232
  thisClass.setLogCmd('color area | ' + ic.midpercent, true);
10232
10233
 
10233
10234
  });
10234
10235
 
10235
- me.myEventCls.onIds("#" + me.pre + "mn4_clrBfactorNorm", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10236
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrBfactorNorm", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10236
10237
  ic.setOptionCls.setOption('color', 'b factor percentile');
10237
10238
  thisClass.setLogCmd('color b factor percentile', true);
10238
10239
  });
10239
10240
 
10240
- me.myEventCls.onIds("#" + me.pre + "mn4_clrIdentity", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10241
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrIdentity", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10241
10242
  ic.setOptionCls.setOption('color', 'identity');
10242
10243
  thisClass.setLogCmd('color identity', true);
10243
10244
  });
10244
10245
 
10245
- me.myEventCls.onIds("#" + me.pre + "mn4_clrConserved", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10246
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrConserved", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10246
10247
  ic.setOptionCls.setOption('color', 'conservation');
10247
10248
  thisClass.setLogCmd('color conservation', true);
10248
10249
  });
10249
10250
 
10250
- me.myEventCls.onIds("#" + me.pre + "mn4_clrCustom", "click", function(e) { me.icn3d; //e.preventDefault();
10251
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrCustom", "click", function(e) { me.icn3d; e.preventDefault();
10251
10252
  me.htmlCls.dialogCls.openDlg('dl_clr', 'Color picker');
10252
10253
  });
10253
10254
 
@@ -10256,25 +10257,26 @@ class ClickMenu {
10256
10257
  //e.preventDefault();
10257
10258
  let color = $(this).attr('color');
10258
10259
  ic.setOptionCls.setOption("color", color);
10260
+
10259
10261
  thisClass.setLogCmd("color " + color, true);
10260
10262
  });
10261
10263
 
10262
- me.myEventCls.onIds("#" + me.pre + "mn4_clrSave", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10264
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrSave", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10263
10265
  ic.setOptionCls.saveColor();
10264
10266
  thisClass.setLogCmd('save color', true);
10265
10267
  });
10266
10268
 
10267
- me.myEventCls.onIds("#" + me.pre + "mn4_clrApplySave", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10269
+ me.myEventCls.onIds("#" + me.pre + "mn4_clrApplySave", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10268
10270
  ic.setOptionCls.applySavedColor();
10269
10271
  thisClass.setLogCmd('apply saved color', true);
10270
10272
  });
10271
10273
 
10272
- me.myEventCls.onIds("#" + me.pre + "mn3_styleSave", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10274
+ me.myEventCls.onIds("#" + me.pre + "mn3_styleSave", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10273
10275
  ic.setOptionCls.saveStyle();
10274
10276
  thisClass.setLogCmd('save style', true);
10275
10277
  });
10276
10278
 
10277
- me.myEventCls.onIds("#" + me.pre + "mn3_styleApplySave", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10279
+ me.myEventCls.onIds("#" + me.pre + "mn3_styleApplySave", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10278
10280
  ic.setOptionCls.applySavedStyle();
10279
10281
  thisClass.setLogCmd('apply saved style', true);
10280
10282
  });
@@ -10286,7 +10288,7 @@ class ClickMenu {
10286
10288
 
10287
10289
  let thisClass = this;
10288
10290
  // mn 5
10289
- me.myEventCls.onIds("#" + me.pre + "mn5_neighborsYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10291
+ me.myEventCls.onIds("#" + me.pre + "mn5_neighborsYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10290
10292
  ic.bConsiderNeighbors = true;
10291
10293
  ic.applyMapCls.removeLastSurface();
10292
10294
  ic.applyMapCls.applySurfaceOptions();
@@ -10294,7 +10296,7 @@ class ClickMenu {
10294
10296
  thisClass.setLogCmd('set surface neighbors on', true);
10295
10297
  });
10296
10298
 
10297
- me.myEventCls.onIds("#" + me.pre + "mn5_neighborsNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10299
+ me.myEventCls.onIds("#" + me.pre + "mn5_neighborsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10298
10300
  ic.bConsiderNeighbors = false;
10299
10301
  ic.applyMapCls.removeLastSurface();
10300
10302
  ic.applyMapCls.applySurfaceOptions();
@@ -10302,48 +10304,48 @@ class ClickMenu {
10302
10304
  thisClass.setLogCmd('set surface neighbors off', true);
10303
10305
  });
10304
10306
 
10305
- me.myEventCls.onIds(["#" + me.pre + "mn5_surfaceVDW", "#" + me.pre + "tool_surfaceVDW"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10307
+ me.myEventCls.onIds(["#" + me.pre + "mn5_surfaceVDW", "#" + me.pre + "tool_surfaceVDW"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10306
10308
  ic.bConsiderNeighbors = false;
10307
10309
  ic.setOptionCls.setOption('surface', 'Van der Waals surface');
10308
10310
  thisClass.setLogCmd('set surface Van der Waals surface', true);
10309
10311
  });
10310
10312
 
10311
- me.myEventCls.onIds("#" + me.pre + "mn5_surfaceSAS", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10313
+ me.myEventCls.onIds("#" + me.pre + "mn5_surfaceSAS", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10312
10314
  ic.bConsiderNeighbors = false;
10313
10315
  ic.setOptionCls.setOption('surface', 'solvent accessible surface');
10314
10316
  thisClass.setLogCmd('set surface solvent accessible surface', true);
10315
10317
  });
10316
10318
 
10317
- me.myEventCls.onIds("#" + me.pre + "mn5_surfaceMolecular", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10319
+ me.myEventCls.onIds("#" + me.pre + "mn5_surfaceMolecular", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10318
10320
  ic.bConsiderNeighbors = false;
10319
10321
  ic.setOptionCls.setOption('surface', 'molecular surface');
10320
10322
  thisClass.setLogCmd('set surface molecular surface', true);
10321
10323
  });
10322
10324
 
10323
- me.myEventCls.onIds("#" + me.pre + "mn5_surfaceVDWContext", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10325
+ me.myEventCls.onIds("#" + me.pre + "mn5_surfaceVDWContext", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10324
10326
  ic.bConsiderNeighbors = true;
10325
10327
  ic.setOptionCls.setOption('surface', 'Van der Waals surface with context');
10326
10328
  thisClass.setLogCmd('set surface Van der Waals surface with context', true);
10327
10329
  });
10328
10330
 
10329
- me.myEventCls.onIds("#" + me.pre + "mn5_surfaceSASContext", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10331
+ me.myEventCls.onIds("#" + me.pre + "mn5_surfaceSASContext", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10330
10332
  ic.bConsiderNeighbors = true;
10331
10333
  ic.setOptionCls.setOption('surface', 'solvent accessible surface with context');
10332
10334
  thisClass.setLogCmd('set surface solvent accessible surface with context', true);
10333
10335
  });
10334
10336
 
10335
- me.myEventCls.onIds("#" + me.pre + "mn5_surfaceMolecularContext", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10337
+ me.myEventCls.onIds("#" + me.pre + "mn5_surfaceMolecularContext", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10336
10338
  ic.bConsiderNeighbors = true;
10337
10339
  ic.setOptionCls.setOption('surface', 'molecular surface with context');
10338
10340
  thisClass.setLogCmd('set surface molecular surface with context', true);
10339
10341
  });
10340
10342
 
10341
- me.myEventCls.onIds("#" + me.pre + "mn5_surfaceNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10343
+ me.myEventCls.onIds("#" + me.pre + "mn5_surfaceNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10342
10344
  ic.setOptionCls.setOption('surface', 'nothing');
10343
10345
  thisClass.setLogCmd('set surface nothing', true);
10344
10346
  });
10345
10347
 
10346
- $(document).on("click", "." + me.pre + "mn5_opacity", function(e) { let ic = me.icn3d; //e.preventDefault();
10348
+ $(document).on("click", "." + me.pre + "mn5_opacity", function(e) { let ic = me.icn3d; e.preventDefault();
10347
10349
  ic.transparentRenderOrder = false;
10348
10350
 
10349
10351
  let value = $(this).attr('v');
@@ -10351,7 +10353,7 @@ class ClickMenu {
10351
10353
  thisClass.setLogCmd('set surface opacity ' + value, true);
10352
10354
  });
10353
10355
 
10354
- $(document).on("click", "." + me.pre + "mn5_opacityslow", function(e) { let ic = me.icn3d; //e.preventDefault();
10356
+ $(document).on("click", "." + me.pre + "mn5_opacityslow", function(e) { let ic = me.icn3d; e.preventDefault();
10355
10357
  ic.transparentRenderOrder = true;
10356
10358
 
10357
10359
  let value = $(this).attr('v');
@@ -10359,35 +10361,35 @@ class ClickMenu {
10359
10361
  thisClass.setLogCmd('set surface2 opacity ' + value, true);
10360
10362
  });
10361
10363
 
10362
- me.myEventCls.onIds("#" + me.pre + "mn5_wireframeYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10364
+ me.myEventCls.onIds("#" + me.pre + "mn5_wireframeYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10363
10365
  ic.setOptionCls.setOption('wireframe', 'yes');
10364
10366
  thisClass.setLogCmd('set surface wireframe on', true);
10365
10367
  });
10366
10368
 
10367
- me.myEventCls.onIds("#" + me.pre + "mn5_wireframeNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10369
+ me.myEventCls.onIds("#" + me.pre + "mn5_wireframeNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10368
10370
  ic.setOptionCls.setOption('wireframe', 'no');
10369
10371
  thisClass.setLogCmd('set surface wireframe off', true);
10370
10372
  });
10371
10373
 
10372
- me.myEventCls.onIds("#" + me.pre + "mn5_elecmap2fofc", "click", function(e) { me.icn3d; //e.preventDefault();
10374
+ me.myEventCls.onIds("#" + me.pre + "mn5_elecmap2fofc", "click", function(e) { me.icn3d; e.preventDefault();
10373
10375
  me.htmlCls.dialogCls.openDlg('dl_elecmap2fofc', '2Fo-Fc Electron Density Map');
10374
10376
  });
10375
10377
 
10376
- me.myEventCls.onIds("#" + me.pre + "mn5_elecmapfofc", "click", function(e) { me.icn3d; //e.preventDefault();
10378
+ me.myEventCls.onIds("#" + me.pre + "mn5_elecmapfofc", "click", function(e) { me.icn3d; e.preventDefault();
10377
10379
  me.htmlCls.dialogCls.openDlg('dl_elecmapfofc', 'Fo-Fc Electron Density Map');
10378
10380
  });
10379
10381
 
10380
- me.myEventCls.onIds(["#" + me.pre + "mn5_elecmapNo", "#" + me.pre + "elecmapNo2", "#" + me.pre + "elecmapNo3", "#" + me.pre + "elecmapNo4", "#" + me.pre + "elecmapNo5"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10382
+ me.myEventCls.onIds(["#" + me.pre + "mn5_elecmapNo", "#" + me.pre + "elecmapNo2", "#" + me.pre + "elecmapNo3", "#" + me.pre + "elecmapNo4", "#" + me.pre + "elecmapNo5"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10381
10383
  ic.setOptionCls.setOption('map', 'nothing');
10382
10384
  thisClass.setLogCmd('setoption map nothing', true);
10383
10385
  });
10384
10386
 
10385
- me.myEventCls.onIds(["#" + me.pre + "delphimapNo", "#" + me.pre + "phimapNo", "#" + me.pre + "phiurlmapNo", "#" + me.pre + "mn1_phimapNo"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10387
+ me.myEventCls.onIds(["#" + me.pre + "delphimapNo", "#" + me.pre + "phimapNo", "#" + me.pre + "phiurlmapNo", "#" + me.pre + "mn1_phimapNo"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10386
10388
  ic.setOptionCls.setOption('phimap', 'nothing');
10387
10389
  thisClass.setLogCmd('setoption phimap nothing', true);
10388
10390
  });
10389
10391
 
10390
- me.myEventCls.onIds(["#" + me.pre + "delphimapNo2", "#" + me.pre + "phimapNo2", "#" + me.pre + "phiurlmapNo2"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10392
+ me.myEventCls.onIds(["#" + me.pre + "delphimapNo2", "#" + me.pre + "phimapNo2", "#" + me.pre + "phiurlmapNo2"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10391
10393
  //ic.setOptionCls.setOption('surface', 'nothing');
10392
10394
  //thisClass.setLogCmd('set surface nothing', true);
10393
10395
  ic.setOptionCls.setOption('phisurface', 'nothing');
@@ -10419,22 +10421,22 @@ class ClickMenu {
10419
10421
  thisClass.setLogCmd('set map fofc sigma ' + sigmafofc, true);
10420
10422
  });
10421
10423
 
10422
- me.myEventCls.onIds("#" + me.pre + "mn5_mapwireframeYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10424
+ me.myEventCls.onIds("#" + me.pre + "mn5_mapwireframeYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10423
10425
  //ic.dsn6ParserCls.dsn6Parser(ic.inputid);
10424
10426
  ic.setOptionCls.setOption('mapwireframe', 'yes');
10425
10427
  thisClass.setLogCmd('set map wireframe on', true);
10426
10428
  });
10427
10429
 
10428
- me.myEventCls.onIds("#" + me.pre + "mn5_mapwireframeNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10430
+ me.myEventCls.onIds("#" + me.pre + "mn5_mapwireframeNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10429
10431
  ic.setOptionCls.setOption('mapwireframe', 'no');
10430
10432
  thisClass.setLogCmd('set map wireframe off', true);
10431
10433
  });
10432
10434
 
10433
- me.myEventCls.onIds("#" + me.pre + "mn5_emmap", "click", function(e) { me.icn3d; //e.preventDefault();
10435
+ me.myEventCls.onIds("#" + me.pre + "mn5_emmap", "click", function(e) { me.icn3d; e.preventDefault();
10434
10436
  me.htmlCls.dialogCls.openDlg('dl_emmap', 'EM Density Map');
10435
10437
  });
10436
10438
 
10437
- me.myEventCls.onIds(["#" + me.pre + "mn5_emmapNo", "#" + me.pre + "emmapNo2"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10439
+ me.myEventCls.onIds(["#" + me.pre + "mn5_emmapNo", "#" + me.pre + "emmapNo2"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10438
10440
  ic.setOptionCls.setOption('emmap', 'nothing');
10439
10441
  thisClass.setLogCmd('setoption emmap nothing', true);
10440
10442
  });
@@ -10451,13 +10453,13 @@ class ClickMenu {
10451
10453
  thisClass.setLogCmd('set emmap percentage ' + empercentage, true);
10452
10454
  });
10453
10455
 
10454
- me.myEventCls.onIds("#" + me.pre + "mn5_emmapwireframeYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10456
+ me.myEventCls.onIds("#" + me.pre + "mn5_emmapwireframeYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10455
10457
  //ic.dsn6ParserCls.dsn6Parser(ic.inputid);
10456
10458
  ic.setOptionCls.setOption('emmapwireframe', 'yes');
10457
10459
  thisClass.setLogCmd('set emmap wireframe on', true);
10458
10460
  });
10459
10461
 
10460
- me.myEventCls.onIds("#" + me.pre + "mn5_emmapwireframeNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10462
+ me.myEventCls.onIds("#" + me.pre + "mn5_emmapwireframeNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10461
10463
  ic.setOptionCls.setOption('emmapwireframe', 'no');
10462
10464
  thisClass.setLogCmd('set emmap wireframe off', true);
10463
10465
  });
@@ -10469,19 +10471,19 @@ class ClickMenu {
10469
10471
 
10470
10472
  let thisClass = this;
10471
10473
  // mn 6
10472
- me.myEventCls.onIds("#" + me.pre + "mn6_assemblyYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10474
+ me.myEventCls.onIds("#" + me.pre + "mn6_assemblyYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10473
10475
  ic.bAssembly = true;
10474
10476
  thisClass.setLogCmd('set assembly on', true);
10475
10477
  ic.drawCls.draw();
10476
10478
  });
10477
10479
 
10478
- me.myEventCls.onIds("#" + me.pre + "mn6_assemblyNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10480
+ me.myEventCls.onIds("#" + me.pre + "mn6_assemblyNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10479
10481
  ic.bAssembly = false;
10480
10482
  thisClass.setLogCmd('set assembly off', true);
10481
10483
  ic.drawCls.draw();
10482
10484
  });
10483
10485
 
10484
- me.myEventCls.onIds("#" + me.pre + "mn6_igrefYes", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
10486
+ me.myEventCls.onIds("#" + me.pre + "mn6_igrefYes", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
10485
10487
  ic.bRunRefnumAgain = true;
10486
10488
 
10487
10489
  thisClass.setLogCmd('ig refnum on', true);
@@ -10504,11 +10506,11 @@ class ClickMenu {
10504
10506
  ic.bRunRefnumAgain = false;
10505
10507
  });
10506
10508
 
10507
- me.myEventCls.onIds("#" + me.pre + "mn6_igrefTpl", "click", async function(e) { me.icn3d; //e.preventDefault();
10509
+ me.myEventCls.onIds("#" + me.pre + "mn6_igrefTpl", "click", async function(e) { me.icn3d; e.preventDefault();
10508
10510
  me.htmlCls.dialogCls.openDlg('dl_igrefTpl', 'Choose an Ig template');
10509
10511
  });
10510
10512
 
10511
- me.myEventCls.onIds("#" + me.pre + "mn6_igrefTpl_apply", "click", async function(e) { me.icn3d; //e.preventDefault();
10513
+ me.myEventCls.onIds("#" + me.pre + "mn6_igrefTpl_apply", "click", async function(e) { me.icn3d; e.preventDefault();
10512
10514
  if(!me.cfg.notebook) dialog.dialog( "close" );
10513
10515
 
10514
10516
  let template = $("#" + me.pre + "refTpl").val();
@@ -10518,11 +10520,11 @@ class ClickMenu {
10518
10520
  thisClass.setLogCmd('ig template ' + template, true);
10519
10521
  });
10520
10522
 
10521
- me.myEventCls.onIds("#" + me.pre + "mn6_alignrefTpl", "click", async function(e) { me.icn3d; //e.preventDefault();
10523
+ me.myEventCls.onIds("#" + me.pre + "mn6_alignrefTpl", "click", async function(e) { me.icn3d; e.preventDefault();
10522
10524
  me.htmlCls.dialogCls.openDlg('dl_alignrefTpl', 'Align with an Ig template');
10523
10525
  });
10524
10526
 
10525
- me.myEventCls.onIds("#" + me.pre + "mn6_alignrefTpl_apply", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
10527
+ me.myEventCls.onIds("#" + me.pre + "mn6_alignrefTpl_apply", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
10526
10528
  if(!me.cfg.notebook) dialog.dialog( "close" );
10527
10529
 
10528
10530
  let template = $("#" + me.pre + "refTpl2").val();
@@ -10546,7 +10548,7 @@ class ClickMenu {
10546
10548
  thisClass.setLogCmd('realign on tmalign', true);
10547
10549
  });
10548
10550
 
10549
- me.myEventCls.onIds("#" + me.pre + "mn6_igrefNo", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
10551
+ me.myEventCls.onIds("#" + me.pre + "mn6_igrefNo", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
10550
10552
  thisClass.setLogCmd('ig refnum off', true);
10551
10553
  await ic.refnumCls.hideIgRefNum();
10552
10554
 
@@ -10556,14 +10558,14 @@ class ClickMenu {
10556
10558
  // ic.drawCls.draw();
10557
10559
  });
10558
10560
 
10559
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelAtoms", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10561
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelAtoms", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10560
10562
  ic.residueLabelsCls.addAtomLabels(ic.hAtoms);
10561
10563
  ic.selectionCls.saveSelectionIfSelected();
10562
10564
  thisClass.setLogCmd('add atom labels', true);
10563
10565
  ic.drawCls.draw();
10564
10566
  });
10565
10567
 
10566
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelElements", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10568
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelElements", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10567
10569
  ic.residueLabelsCls.addAtomLabels(ic.hAtoms, true);
10568
10570
  ic.selectionCls.saveSelectionIfSelected();
10569
10571
  thisClass.setLogCmd('add element labels', true);
@@ -10571,49 +10573,49 @@ class ClickMenu {
10571
10573
  });
10572
10574
 
10573
10575
 
10574
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelResidues", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10576
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelResidues", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10575
10577
  ic.residueLabelsCls.addResidueLabels(ic.hAtoms);
10576
10578
  ic.selectionCls.saveSelectionIfSelected();
10577
10579
  thisClass.setLogCmd('add residue labels', true);
10578
10580
  ic.drawCls.draw();
10579
10581
  });
10580
10582
 
10581
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelResnum", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10583
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelResnum", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10582
10584
  ic.residueLabelsCls.addResidueLabels(ic.hAtoms, undefined, undefined, true);
10583
10585
  ic.selectionCls.saveSelectionIfSelected();
10584
10586
  thisClass.setLogCmd('add residue number labels', true);
10585
10587
  ic.drawCls.draw();
10586
10588
  });
10587
10589
 
10588
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelRefnum", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10590
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelRefnum", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10589
10591
  ic.residueLabelsCls.addResidueLabels(ic.hAtoms, undefined, undefined, undefined, true);
10590
10592
  ic.selectionCls.saveSelectionIfSelected();
10591
10593
  thisClass.setLogCmd('add reference number labels', true);
10592
10594
  ic.drawCls.draw();
10593
10595
  });
10594
10596
 
10595
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelIg", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10597
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelIg", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10596
10598
  ic.residueLabelsCls.addIgLabels(ic.hAtoms);
10597
10599
  ic.selectionCls.saveSelectionIfSelected();
10598
10600
  thisClass.setLogCmd('add ig labels', true);
10599
10601
  ic.drawCls.draw();
10600
10602
  });
10601
10603
 
10602
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelChains", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10604
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelChains", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10603
10605
  ic.analysisCls.addChainLabels(ic.hAtoms);
10604
10606
  ic.selectionCls.saveSelectionIfSelected();
10605
10607
  thisClass.setLogCmd('add chain labels', true);
10606
10608
  ic.drawCls.draw();
10607
10609
  });
10608
10610
 
10609
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelTermini", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10611
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelTermini", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10610
10612
  ic.analysisCls.addTerminiLabels(ic.hAtoms);
10611
10613
  ic.selectionCls.saveSelectionIfSelected();
10612
10614
  thisClass.setLogCmd('add terminal labels', true);
10613
10615
  ic.drawCls.draw();
10614
10616
  });
10615
10617
 
10616
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10618
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10617
10619
  me.htmlCls.dialogCls.openDlg('dl_addlabel', 'Add custom labels by selection');
10618
10620
  ic.pk = 1;
10619
10621
  ic.opts['pk'] = 'atom';
@@ -10621,19 +10623,19 @@ class ClickMenu {
10621
10623
  ic.pAtomNum = 0;
10622
10624
  });
10623
10625
 
10624
- me.myEventCls.onIds("#" + me.pre + "mn6_addlabelSelection", "click", function(e) { me.icn3d; //e.preventDefault();
10626
+ me.myEventCls.onIds("#" + me.pre + "mn6_addlabelSelection", "click", function(e) { me.icn3d; e.preventDefault();
10625
10627
  me.htmlCls.dialogCls.openDlg('dl_addlabelselection', 'Add custom labels by the selected');
10626
10628
  });
10627
10629
 
10628
- me.myEventCls.onIds("#" + me.pre + "mn6_labelColor", "click", function(e) { me.icn3d; //e.preventDefault();
10630
+ me.myEventCls.onIds("#" + me.pre + "mn6_labelColor", "click", function(e) { me.icn3d; e.preventDefault();
10629
10631
  me.htmlCls.dialogCls.openDlg('dl_labelColor', 'Change color for all labels');
10630
10632
  });
10631
10633
 
10632
- me.myEventCls.onIds(["#" + me.pre + "mn2_saveselection","#" + me.pre + "tool_saveselection"], "click", function(e) { me.icn3d; //e.preventDefault();
10634
+ me.myEventCls.onIds(["#" + me.pre + "mn2_saveselection","#" + me.pre + "tool_saveselection"], "click", function(e) { me.icn3d; e.preventDefault();
10633
10635
  me.htmlCls.dialogCls.openDlg('dl_saveselection', 'Save the selected');
10634
10636
  });
10635
10637
 
10636
- me.myEventCls.onIds(["#" + me.pre + "mn6_addlabelNo", "#" + me.pre + "removeLabels"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10638
+ me.myEventCls.onIds(["#" + me.pre + "mn6_addlabelNo", "#" + me.pre + "removeLabels"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10637
10639
  ic.labelcolor = undefined;
10638
10640
  ic.pickpair = false;
10639
10641
  //ic.labels['residue'] = [];
@@ -10648,14 +10650,14 @@ class ClickMenu {
10648
10650
  ic.drawCls.draw();
10649
10651
  });
10650
10652
 
10651
- $(document).on("click", "." + me.pre + "mn6_labelscale", function(e) { let ic = me.icn3d; //e.preventDefault();
10653
+ $(document).on("click", "." + me.pre + "mn6_labelscale", function(e) { let ic = me.icn3d; e.preventDefault();
10652
10654
  let value = $(this).attr('v');
10653
10655
  ic.labelScale = value;
10654
10656
  ic.drawCls.draw();
10655
10657
  thisClass.setLogCmd('set label scale ' + value, true);
10656
10658
  });
10657
10659
 
10658
- me.myEventCls.onIds("#" + me.pre + "mn6_distanceYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10660
+ me.myEventCls.onIds("#" + me.pre + "mn6_distanceYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10659
10661
  me.htmlCls.dialogCls.openDlg('dl_distance', 'Measure the distance of atoms');
10660
10662
  ic.pk = 1;
10661
10663
  ic.opts['pk'] = 'atom';
@@ -10665,7 +10667,7 @@ class ClickMenu {
10665
10667
  });
10666
10668
 
10667
10669
 
10668
- me.myEventCls.onIds("#" + me.pre + "mn6_distTwoSets", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10670
+ me.myEventCls.onIds("#" + me.pre + "mn6_distTwoSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10669
10671
  me.htmlCls.dialogCls.openDlg('dl_disttwosets', 'Measure the distance between two sets');
10670
10672
 
10671
10673
  thisClass.setSetsMenus('atomsCustomDist');
@@ -10673,7 +10675,7 @@ class ClickMenu {
10673
10675
  ic.bMeasureDistance = true;
10674
10676
  });
10675
10677
 
10676
- me.myEventCls.onIds("#" + me.pre + "mn6_distManySets", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10678
+ me.myEventCls.onIds("#" + me.pre + "mn6_distManySets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10677
10679
  me.htmlCls.dialogCls.openDlg('dl_distmanysets', 'Measure the pairwise distances among many sets');
10678
10680
 
10679
10681
  thisClass.setSetsMenus('atomsCustomDistTable');
@@ -10681,7 +10683,7 @@ class ClickMenu {
10681
10683
  ic.bMeasureDistance = true;
10682
10684
  });
10683
10685
 
10684
- me.myEventCls.onIds("#" + me.pre + "mn6_angleManySets", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10686
+ me.myEventCls.onIds("#" + me.pre + "mn6_angleManySets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10685
10687
  me.htmlCls.dialogCls.openDlg('dl_anglemanysets', 'Measure the pairwise angles among many sets');
10686
10688
 
10687
10689
  thisClass.setSetsMenus('atomsCustomAngleTable');
@@ -10689,7 +10691,7 @@ class ClickMenu {
10689
10691
  ic.bMeasureAngle = true;
10690
10692
  });
10691
10693
 
10692
- me.myEventCls.onIds("#" + me.pre + "mn6_distanceNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10694
+ me.myEventCls.onIds("#" + me.pre + "mn6_distanceNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10693
10695
  ic.pickpair = false;
10694
10696
  let select = "set lines off";
10695
10697
  thisClass.setLogCmd(select, true);
@@ -10700,7 +10702,7 @@ class ClickMenu {
10700
10702
  ic.drawCls.draw();
10701
10703
  });
10702
10704
 
10703
- me.myEventCls.onIds("#" + me.pre + "mn5_cartoonshape", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10705
+ me.myEventCls.onIds("#" + me.pre + "mn5_cartoonshape", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10704
10706
  me.htmlCls.dialogCls.openDlg('dl_cartoonshape', 'Draw cartoon for a set');
10705
10707
 
10706
10708
  let bOneset = true;
@@ -10709,7 +10711,7 @@ class ClickMenu {
10709
10711
  ic.bCartoonshape = true;
10710
10712
  });
10711
10713
 
10712
- me.myEventCls.onIds("#" + me.pre + "mn5_linebtwsets", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10714
+ me.myEventCls.onIds("#" + me.pre + "mn5_linebtwsets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10713
10715
  me.htmlCls.dialogCls.openDlg('dl_linebtwsets', 'Draw a line between two sets');
10714
10716
 
10715
10717
  thisClass.setSetsMenus('linebtwsets');
@@ -10718,21 +10720,21 @@ class ClickMenu {
10718
10720
  });
10719
10721
 
10720
10722
 
10721
- me.myEventCls.onIds(["#" + me.pre + "mn2_selectedcenter", "#" + me.pre + "zoomin_selection", "#" + me.pre + "tool_selectedcenter"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10723
+ me.myEventCls.onIds(["#" + me.pre + "mn2_selectedcenter", "#" + me.pre + "zoomin_selection", "#" + me.pre + "tool_selectedcenter"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10722
10724
  //thisClass.setLogCmd('zoom selection', true);
10723
10725
  ic.transformCls.zoominSelection();
10724
10726
  ic.drawCls.draw();
10725
10727
  thisClass.setLogCmd('zoom selection', true);
10726
10728
  });
10727
10729
 
10728
- me.myEventCls.onIds("#" + me.pre + "mn6_center", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10730
+ me.myEventCls.onIds("#" + me.pre + "mn6_center", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10729
10731
  //thisClass.setLogCmd('center selection', true);
10730
10732
  ic.applyCenterCls.centerSelection();
10731
10733
  ic.drawCls.draw();
10732
10734
  thisClass.setLogCmd('center selection', true);
10733
10735
  });
10734
10736
 
10735
- me.myEventCls.onIds(["#" + me.pre + "mn6_resetOrientation", "#" + me.pre + "resetOrientation", "#" + me.pre + "tool_resetOrientation"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10737
+ me.myEventCls.onIds(["#" + me.pre + "mn6_resetOrientation", "#" + me.pre + "resetOrientation", "#" + me.pre + "tool_resetOrientation"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10736
10738
  //thisClass.setLogCmd('reset orientation', true);
10737
10739
  ic.transformCls.resetOrientation();
10738
10740
  //ic.setColorCls.applyOriginalColor();
@@ -10740,17 +10742,17 @@ class ClickMenu {
10740
10742
  thisClass.setLogCmd('reset orientation', true);
10741
10743
  });
10742
10744
 
10743
- me.myEventCls.onIds(["#" + me.pre + "mn6_chemicalbindingshow", "#" + me.pre + "chemicalbindingshow"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10745
+ me.myEventCls.onIds(["#" + me.pre + "mn6_chemicalbindingshow", "#" + me.pre + "chemicalbindingshow"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10744
10746
  ic.setOptionCls.setOption('chemicalbinding', 'show');
10745
10747
  thisClass.setLogCmd('set chemicalbinding show', true);
10746
10748
  });
10747
10749
 
10748
- me.myEventCls.onIds(["#" + me.pre + "mn6_chemicalbindinghide", "#" + me.pre + "chemicalbindinghide"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10750
+ me.myEventCls.onIds(["#" + me.pre + "mn6_chemicalbindinghide", "#" + me.pre + "chemicalbindinghide"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10749
10751
  ic.setOptionCls.setOption('chemicalbinding', 'hide');
10750
10752
  thisClass.setLogCmd('set chemicalbinding hide', true);
10751
10753
  });
10752
10754
 
10753
- me.myEventCls.onIds("#" + me.pre + "mn6_sidebyside", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10755
+ me.myEventCls.onIds("#" + me.pre + "mn6_sidebyside", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10754
10756
  if(ic.bInputfile) {
10755
10757
  var aaa = 1; //alert("Side-by-Side does NOT work when the input is from a local file.");
10756
10758
  return;
@@ -10769,19 +10771,19 @@ class ClickMenu {
10769
10771
  //}
10770
10772
  });
10771
10773
 
10772
- $(document).on("click", "#" + me.pre + "mn2_translate", function(e) { me.icn3d; //e.preventDefault();
10774
+ $(document).on("click", "#" + me.pre + "mn2_translate", function(e) { me.icn3d; e.preventDefault();
10773
10775
  me.htmlCls.dialogCls.openDlg('dl_translate', 'Translate the X,Y,Z coordinates of the structure');
10774
10776
  });
10775
10777
 
10776
- $(document).on("click", "#" + me.pre + "mn6_angleTwoSets", function(e) { me.icn3d; //e.preventDefault();
10778
+ $(document).on("click", "#" + me.pre + "mn6_angleTwoSets", function(e) { me.icn3d; e.preventDefault();
10777
10779
  me.htmlCls.dialogCls.openDlg('dl_angle', 'Measure the angle between two vectors');
10778
10780
  });
10779
10781
 
10780
- $(document).on("click", "#" + me.pre + "mn2_matrix", function(e) { me.icn3d; //e.preventDefault();
10782
+ $(document).on("click", "#" + me.pre + "mn2_matrix", function(e) { me.icn3d; e.preventDefault();
10781
10783
  me.htmlCls.dialogCls.openDlg('dl_matrix', 'Apply matrix to the X,Y,Z coordinates of the structure');
10782
10784
  });
10783
10785
 
10784
- $(document).on("click", "." + me.pre + "mn6_rotate", function(e) { let ic = me.icn3d; //e.preventDefault();
10786
+ $(document).on("click", "." + me.pre + "mn6_rotate", function(e) { let ic = me.icn3d; e.preventDefault();
10785
10787
  let value = $(this).attr('v').toLowerCase();
10786
10788
  let direction = value.split(' ')[1];
10787
10789
 
@@ -10793,7 +10795,7 @@ class ClickMenu {
10793
10795
  ic.resizeCanvasCls.rotStruc(direction);
10794
10796
  });
10795
10797
 
10796
- $(document).on("click", "." + me.pre + "mn6_rotate90", function(e) { let ic = me.icn3d; //e.preventDefault();
10798
+ $(document).on("click", "." + me.pre + "mn6_rotate90", function(e) { let ic = me.icn3d; e.preventDefault();
10797
10799
  let value = $(this).attr('v').toLowerCase();
10798
10800
  let direction = value.split(' ')[1];
10799
10801
 
@@ -10812,21 +10814,21 @@ class ClickMenu {
10812
10814
  ic.transformCls.setRotation(axis, angle);
10813
10815
  });
10814
10816
 
10815
- me.myEventCls.onIds("#" + me.pre + "mn6_cameraPers", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10817
+ me.myEventCls.onIds("#" + me.pre + "mn6_cameraPers", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10816
10818
  ic.setOptionCls.setOption('camera', 'perspective');
10817
10819
  thisClass.setLogCmd('set camera perspective', true);
10818
10820
  });
10819
10821
 
10820
- me.myEventCls.onIds("#" + me.pre + "mn6_cameraOrth", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10822
+ me.myEventCls.onIds("#" + me.pre + "mn6_cameraOrth", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10821
10823
  ic.setOptionCls.setOption('camera', 'orthographic');
10822
10824
  thisClass.setLogCmd('set camera orthographic', true);
10823
10825
  });
10824
10826
 
10825
- me.myEventCls.onIds("#" + me.pre + "mn6_bkgdBlack", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10827
+ me.myEventCls.onIds("#" + me.pre + "mn6_bkgdBlack", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10826
10828
  ic.setStyleCls.setBackground('black');
10827
10829
  });
10828
10830
 
10829
- me.myEventCls.onIds("#" + me.pre + "tool_bkgd", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10831
+ me.myEventCls.onIds("#" + me.pre + "tool_bkgd", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10830
10832
  if(ic.opts['background'] == 'black') {
10831
10833
  ic.setStyleCls.setBackground('white');
10832
10834
  }
@@ -10835,19 +10837,19 @@ class ClickMenu {
10835
10837
  }
10836
10838
  });
10837
10839
 
10838
- me.myEventCls.onIds("#" + me.pre + "mn6_bkgdGrey", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10840
+ me.myEventCls.onIds("#" + me.pre + "mn6_bkgdGrey", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10839
10841
  ic.setStyleCls.setBackground('grey');
10840
10842
  });
10841
10843
 
10842
- me.myEventCls.onIds(["#" + me.pre + "mn6_bkgdWhite", "#" + me.pre + "tool_bkgdWhite"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10844
+ me.myEventCls.onIds(["#" + me.pre + "mn6_bkgdWhite", "#" + me.pre + "tool_bkgdWhite"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10843
10845
  ic.setStyleCls.setBackground('white');
10844
10846
  });
10845
10847
 
10846
- me.myEventCls.onIds("#" + me.pre + "mn6_bkgdTransparent", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10848
+ me.myEventCls.onIds("#" + me.pre + "mn6_bkgdTransparent", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10847
10849
  ic.setStyleCls.setBackground('transparent');
10848
10850
  });
10849
10851
 
10850
- me.myEventCls.onIds("#" + me.pre + "mn6_showfogYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10852
+ me.myEventCls.onIds("#" + me.pre + "mn6_showfogYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10851
10853
  //ic.setOptionCls.setOption('fog', 'yes');
10852
10854
  ic.opts['fog'] = 'yes';
10853
10855
  ic.fogCls.setFog(true);
@@ -10855,7 +10857,7 @@ class ClickMenu {
10855
10857
  thisClass.setLogCmd('set fog on', true);
10856
10858
  });
10857
10859
 
10858
- me.myEventCls.onIds("#" + me.pre + "mn6_showfogNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10860
+ me.myEventCls.onIds("#" + me.pre + "mn6_showfogNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10859
10861
  //ic.setOptionCls.setOption('fog', 'no');
10860
10862
  ic.opts['fog'] = 'no';
10861
10863
  ic.fogCls.setFog(true);
@@ -10863,22 +10865,22 @@ class ClickMenu {
10863
10865
  thisClass.setLogCmd('set fog off', true);
10864
10866
  });
10865
10867
 
10866
- me.myEventCls.onIds("#" + me.pre + "mn6_showslabYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10868
+ me.myEventCls.onIds("#" + me.pre + "mn6_showslabYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10867
10869
  ic.setOptionCls.setOption('slab', 'yes');
10868
10870
  thisClass.setLogCmd('set slab on', true);
10869
10871
  });
10870
10872
 
10871
- me.myEventCls.onIds("#" + me.pre + "mn6_showslabNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10873
+ me.myEventCls.onIds("#" + me.pre + "mn6_showslabNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10872
10874
  ic.setOptionCls.setOption('slab', 'no');
10873
10875
  thisClass.setLogCmd('set slab off', true);
10874
10876
  });
10875
10877
 
10876
- me.myEventCls.onIds("#" + me.pre + "mn6_showaxisYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10878
+ me.myEventCls.onIds("#" + me.pre + "mn6_showaxisYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10877
10879
  ic.setOptionCls.setOption('axis', 'yes');
10878
10880
  thisClass.setLogCmd('set axis on', true);
10879
10881
  });
10880
10882
 
10881
- me.myEventCls.onIds("#" + me.pre + "mn6_showaxisSel", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10883
+ me.myEventCls.onIds("#" + me.pre + "mn6_showaxisSel", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10882
10884
  ic.pc1 = true;
10883
10885
 
10884
10886
  ic.axesCls.setPc1Axes();
@@ -10886,7 +10888,7 @@ class ClickMenu {
10886
10888
  });
10887
10889
 
10888
10890
 
10889
- me.myEventCls.onIds("#" + me.pre + "mn6_showaxisNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10891
+ me.myEventCls.onIds("#" + me.pre + "mn6_showaxisNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10890
10892
  ic.pc1 = false;
10891
10893
  ic.axes = [];
10892
10894
 
@@ -10895,37 +10897,37 @@ class ClickMenu {
10895
10897
  thisClass.setLogCmd('set axis off', true);
10896
10898
  });
10897
10899
 
10898
- me.myEventCls.onIds("#" + me.pre + "mn6_symmetry", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
10900
+ me.myEventCls.onIds("#" + me.pre + "mn6_symmetry", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
10899
10901
  ic.bAxisOnly = false;
10900
10902
  await ic.symdCls.retrieveSymmetry(Object.keys(ic.structures)[0]);
10901
10903
  //me.htmlCls.dialogCls.openDlg('dl_symmetry', 'Symmetry');
10902
10904
  });
10903
10905
 
10904
- me.myEventCls.onIds("#" + me.pre + "mn6_symd", "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
10906
+ me.myEventCls.onIds("#" + me.pre + "mn6_symd", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
10905
10907
  ic.bAxisOnly = false;
10906
10908
  await ic.symdCls.retrieveSymd();
10907
10909
  ic.bSymd = true;
10908
10910
 
10909
10911
  thisClass.setLogCmd('symd symmetry', true);
10910
10912
  });
10911
- me.myEventCls.onIds("#" + me.pre + "mn6_clear_sym", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10913
+ me.myEventCls.onIds("#" + me.pre + "mn6_clear_sym", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10912
10914
  ic.symdArray = [];
10913
10915
  ic.drawCls.draw();
10914
10916
  thisClass.setLogCmd('clear symd symmetry', true);
10915
10917
  });
10916
- me.myEventCls.onIds("#" + me.pre + "mn6_axes_only", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10918
+ me.myEventCls.onIds("#" + me.pre + "mn6_axes_only", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10917
10919
  ic.bAxisOnly = true;
10918
10920
  ic.drawCls.draw();
10919
10921
  thisClass.setLogCmd('show axis', true);
10920
10922
  });
10921
10923
 
10922
10924
 
10923
- me.myEventCls.onIds("#" + me.pre + "mn6_area", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10925
+ me.myEventCls.onIds("#" + me.pre + "mn6_area", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10924
10926
  ic.analysisCls.calculateArea();
10925
10927
  thisClass.setLogCmd('area', true);
10926
10928
  });
10927
10929
 
10928
- me.myEventCls.onIds("#" + me.pre + "applysymmetry", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10930
+ me.myEventCls.onIds("#" + me.pre + "applysymmetry", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10929
10931
  ic.bAxisOnly = false;
10930
10932
 
10931
10933
  let title = $("#" + me.pre + "selectSymmetry" ).val();
@@ -10935,14 +10937,14 @@ class ClickMenu {
10935
10937
  ic.drawCls.draw();
10936
10938
  thisClass.setLogCmd('symmetry ' + title, true);
10937
10939
  });
10938
- me.myEventCls.onIds("#" + me.pre + "clearsymmetry", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10940
+ me.myEventCls.onIds("#" + me.pre + "clearsymmetry", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10939
10941
  let title = 'none';
10940
10942
  ic.symmetrytitle = undefined;
10941
10943
  ic.drawCls.draw();
10942
10944
  thisClass.setLogCmd('symmetry ' + title, true);
10943
10945
  });
10944
10946
 
10945
- me.myEventCls.onIds(["#" + me.pre + "mn6_hbondsYes", "#" + me.pre + "hbondsYes"], "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10947
+ me.myEventCls.onIds(["#" + me.pre + "mn6_hbondsYes", "#" + me.pre + "hbondsYes"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
10946
10948
  thisClass.SetChainsAdvancedMenu();
10947
10949
 
10948
10950
  let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
@@ -10959,11 +10961,11 @@ class ClickMenu {
10959
10961
  $("#" + me.pre + "atomsCustomHbond2").resizable();
10960
10962
  });
10961
10963
 
10962
- me.myEventCls.onIds(["#" + me.pre + "mn6_contactmap"], "click", function(e) { me.icn3d; //e.preventDefault();
10964
+ me.myEventCls.onIds(["#" + me.pre + "mn6_contactmap"], "click", function(e) { me.icn3d; e.preventDefault();
10963
10965
  me.htmlCls.dialogCls.openDlg('dl_contact', 'Set contact map');
10964
10966
  });
10965
10967
 
10966
- me.myEventCls.onIds(["#" + me.pre + "mn6_DSSP"], "click", async function(e) { let ic = me.icn3d; //e.preventDefault();
10968
+ me.myEventCls.onIds(["#" + me.pre + "mn6_DSSP"], "click", async function(e) { let ic = me.icn3d; e.preventDefault();
10967
10969
  thisClass.setLogCmd('set dssp sse', true);
10968
10970
  await ic.pdbParserCls.applyCommandDssp();
10969
10971
  ic.bResetAnno = true;
@@ -10976,12 +10978,12 @@ class ClickMenu {
10976
10978
  });
10977
10979
 
10978
10980
 
10979
- me.myEventCls.onIds("#" + me.pre + "mn6_hbondsNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10981
+ me.myEventCls.onIds("#" + me.pre + "mn6_hbondsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10980
10982
  ic.showInterCls.hideHbondsContacts();
10981
10983
  ic.drawCls.draw();
10982
10984
  });
10983
10985
 
10984
- me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10986
+ me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10985
10987
  let select = "stabilizer";
10986
10988
  ic.threeDPrintCls.addStabilizer();
10987
10989
  ic.threeDPrintCls.prepareFor3Dprint();
@@ -10989,14 +10991,14 @@ class ClickMenu {
10989
10991
  thisClass.setLogCmd(select, true);
10990
10992
  });
10991
10993
 
10992
- me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
10994
+ me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
10993
10995
  let select = "set stabilizer off";
10994
10996
  thisClass.setLogCmd(select, true);
10995
10997
  ic.threeDPrintCls.hideStabilizer();
10996
10998
  ic.drawCls.draw();
10997
10999
  });
10998
11000
 
10999
- me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerOne", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
11001
+ me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerOne", "click", function(e) { let ic = me.icn3d; e.preventDefault();
11000
11002
  me.htmlCls.dialogCls.openDlg('dl_stabilizer', 'Add One Stabilizer');
11001
11003
  ic.pk = 1;
11002
11004
  ic.opts['pk'] = 'atom';
@@ -11004,7 +11006,7 @@ class ClickMenu {
11004
11006
  ic.pAtomNum = 0;
11005
11007
  });
11006
11008
 
11007
- me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerRmOne", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
11009
+ me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerRmOne", "click", function(e) { let ic = me.icn3d; e.preventDefault();
11008
11010
  me.htmlCls.dialogCls.openDlg('dl_stabilizer_rm', 'Remove One Stabilizer');
11009
11011
  ic.pk = 1;
11010
11012
  ic.opts['pk'] = 'atom';
@@ -11012,27 +11014,27 @@ class ClickMenu {
11012
11014
  ic.pAtomNum = 0;
11013
11015
  });
11014
11016
 
11015
- me.myEventCls.onIds("#" + me.pre + "mn1_thicknessSet", "click", function(e) { me.icn3d; //e.preventDefault();
11017
+ me.myEventCls.onIds("#" + me.pre + "mn1_thicknessSet", "click", function(e) { me.icn3d; e.preventDefault();
11016
11018
  me.htmlCls.dialogCls.openDlg('dl_thickness', 'Set Thickness for 3D Printing');
11017
11019
  });
11018
11020
 
11019
- me.myEventCls.onIds("#" + me.pre + "mn3_setThickness", "click", function(e) { me.icn3d; //e.preventDefault();
11021
+ me.myEventCls.onIds("#" + me.pre + "mn3_setThickness", "click", function(e) { me.icn3d; e.preventDefault();
11020
11022
  me.htmlCls.dialogCls.openDlg('dl_thickness2', 'Style Preferences');
11021
11023
  });
11022
11024
 
11023
11025
 
11024
- me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
11026
+ me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
11025
11027
  let select = "disulfide bonds";
11026
11028
  thisClass.setLogCmd(select, true);
11027
11029
  ic.showInterCls.showSsbonds();
11028
11030
  });
11029
11031
 
11030
- me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsExport", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
11032
+ me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsExport", "click", function(e) { let ic = me.icn3d; e.preventDefault();
11031
11033
  ic.viewInterPairsCls.exportSsbondPairs();
11032
11034
  thisClass.setLogCmd("export disulfide bond pairs", false);
11033
11035
  });
11034
11036
 
11035
- me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
11037
+ me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
11036
11038
  ic.opts["ssbonds"] = "no";
11037
11039
  let select = "set disulfide bonds off";
11038
11040
  thisClass.setLogCmd(select, true);
@@ -11040,7 +11042,7 @@ class ClickMenu {
11040
11042
  ic.setOptionCls.setStyle('sidec', 'nothing');
11041
11043
  });
11042
11044
 
11043
- me.myEventCls.onIds("#" + me.pre + "mn6_clbondsYes", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
11045
+ me.myEventCls.onIds("#" + me.pre + "mn6_clbondsYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
11044
11046
  let select = "cross linkage";
11045
11047
  thisClass.setLogCmd(select, true);
11046
11048
  //ic.bShowCrossResidueBond = true;
@@ -11048,12 +11050,12 @@ class ClickMenu {
11048
11050
  ic.showInterCls.showClbonds();
11049
11051
  });
11050
11052
 
11051
- me.myEventCls.onIds("#" + me.pre + "mn6_clbondsExport", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
11053
+ me.myEventCls.onIds("#" + me.pre + "mn6_clbondsExport", "click", function(e) { let ic = me.icn3d; e.preventDefault();
11052
11054
  ic.viewInterPairsCls.exportClbondPairs();
11053
11055
  thisClass.setLogCmd("export cross linkage pairs", false);
11054
11056
  });
11055
11057
 
11056
- me.myEventCls.onIds("#" + me.pre + "mn6_clbondsNo", "click", function(e) { let ic = me.icn3d; //e.preventDefault();
11058
+ me.myEventCls.onIds("#" + me.pre + "mn6_clbondsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
11057
11059
  ic.opts["clbonds"] = "no";
11058
11060
  let select = "set cross linkage off";
11059
11061
  thisClass.setLogCmd(select, true);
@@ -11101,7 +11103,7 @@ class ClickMenu {
11101
11103
  });
11102
11104
  });
11103
11105
 
11104
- me.myEventCls.onIds("#" + me.pre + "jn_copy", "click", function(e) { me.icn3d; //e.preventDefault();
11106
+ me.myEventCls.onIds("#" + me.pre + "jn_copy", "click", function(e) { me.icn3d; e.preventDefault();
11105
11107
  let text = $("#" + me.pre + "jn_commands").val();
11106
11108
  navigator.clipboard.writeText(text);
11107
11109
  });
@@ -11727,7 +11729,7 @@ class SetMenu {
11727
11729
 
11728
11730
  html += this.getLink('mn1_urlfile', 'URL(CORS) ' + me.htmlCls.wifiStr, undefined, 2);
11729
11731
  html += this.getMenuSep();
11730
- html += this.getLink('mn1_pngimage', 'iCn3D PNG Image', 1, 2);
11732
+ html += this.getLink('mn1_pngimage', 'iCn3D PNG (appendable)', 1, 2);
11731
11733
  html += this.getLink('mn1_state', 'State/Script File', undefined, 2);
11732
11734
  html += this.getLink('mn1_fixedversion', 'Share Link in Archived Ver. ' + me.htmlCls.wifiStr, undefined, 2);
11733
11735
  html += this.getLink('mn1_selection', 'Selection File', undefined, 2);
@@ -14166,9 +14168,9 @@ class SetDialog {
14166
14168
  html += "</div>";
14167
14169
 
14168
14170
  html += me.htmlCls.divStr + "dl_pngimage' class='" + dialogClass + "'>";
14169
- html += this.addNotebookTitle('dl_pngimage', 'Please input an iCn3D PNG Image file');
14170
- html += "iCn3D PNG image: " + me.htmlCls.inputFileStr + "id='" + me.pre + "pngimage'><br/>";
14171
- html += me.htmlCls.buttonStr + "reload_pngimage' style='margin-top: 6px;'>Load</button>";
14171
+ html += this.addNotebookTitle('dl_pngimage', 'Please append iCn3D PNG Image files');
14172
+ html += "Multiple iCn3D PNG images: " + me.htmlCls.inputFileStr + " multiple id='" + me.pre + "pngimage' size=8><br/>";
14173
+ html += me.htmlCls.buttonStr + "reload_pngimage' style='margin-top: 6px;'>Append</button>";
14172
14174
  html += "</div>";
14173
14175
 
14174
14176
  html += me.htmlCls.divStr + "dl_state' class='" + dialogClass + "'>";
@@ -15424,11 +15426,18 @@ class Events {
15424
15426
  }
15425
15427
  }
15426
15428
 
15427
- async readFile(bAppend, files, index, dataStrAll, bmmCIF) { let me = this.icn3dui, ic = me.icn3d, thisClass = this;
15429
+ async readFile(bAppend, files, index, dataStrAll, bmmCIF, bPng) { let me = this.icn3dui, ic = me.icn3d, thisClass = this;
15428
15430
  let file = files[index];
15429
15431
  let commandName = (bAppend) ? 'append': 'load';
15430
- commandName += (bmmCIF) ? ' mmcif file ': ' pdb file ';
15432
+ commandName += (bmmCIF) ? ' mmcif file ' : (bPng) ? ' png file ' : ' pdb file ';
15431
15433
 
15434
+ /*
15435
+ reader.onload = async function(e) {
15436
+ let imageStr = e.target.result; // or = reader.result;
15437
+ await thisClass.loadPng(dataStr);
15438
+ }
15439
+ */
15440
+
15432
15441
  let reader = new FileReader();
15433
15442
  reader.onload = async function(e) {
15434
15443
  let dataStr = e.target.result; // or = reader.result;
@@ -15446,7 +15455,17 @@ class Events {
15446
15455
  }
15447
15456
 
15448
15457
  ic.bInputfile = true;
15449
- ic.InputfileType = (bmmCIF) ? 'mmcif' : 'pdb';
15458
+ ic.InputfileType = (bmmCIF) ? 'mmcif' : (bPng) ? 'png' : 'pdb';
15459
+ if(bPng) {
15460
+ let result = await me.htmlCls.setHtmlCls.loadPng(dataStr);
15461
+ dataStr = result.pdb;
15462
+
15463
+ if(!dataStr) return; // old iCn3D PNG with sharable link
15464
+
15465
+ if(!ic.statefileArray) ic.statefileArray = [];
15466
+ ic.statefileArray.push(result.statefile);
15467
+ }
15468
+
15450
15469
  ic.InputfileData = (ic.InputfileData) ? ic.InputfileData + '\nENDMDL\n' + dataStr : dataStr;
15451
15470
 
15452
15471
  dataStrAll = (index > 0) ? dataStrAll + '\nENDMDL\n' + dataStr : dataStr;
@@ -15466,7 +15485,7 @@ class Events {
15466
15485
  //ic.InputfileType = undefined; // reset
15467
15486
  }
15468
15487
  else {
15469
- await thisClass.readFile(bAppend, files, index + 1, dataStrAll, bmmCIF);
15488
+ await thisClass.readFile(bAppend, files, index + 1, dataStrAll, bmmCIF, bPng);
15470
15489
  }
15471
15490
 
15472
15491
  if(bAppend) {
@@ -19179,7 +19198,7 @@ class SetHtml {
19179
19198
  if(me.bNode) return;
19180
19199
 
19181
19200
  let thisClass = this;
19182
- me.myEventCls.onIds("#" + me.pre + "reload_pngimage", "click", function(e) { let ic = me.icn3d;
19201
+ me.myEventCls.onIds("#" + me.pre + "reload_pngimage", "click", async function(e) { let ic = me.icn3d;
19183
19202
  e.preventDefault();
19184
19203
  if(!me.cfg.notebook) dialog.dialog( "close" );
19185
19204
  //close all dialog
@@ -19189,30 +19208,32 @@ class SetHtml {
19189
19208
  else {
19190
19209
  ic.resizeCanvasCls.closeDialogs();
19191
19210
  }
19192
- // initialize icn3dui
19193
- //me.initUI();
19194
- ic.init();
19195
- let file = $("#" + me.pre + "pngimage")[0].files[0];
19196
- if(!file) {
19211
+
19212
+ // ic.init();
19213
+ let files = $("#" + me.pre + "pngimage")[0].files;
19214
+ if(!files[0]) {
19197
19215
  var aaa = 1; //alert("Please select a file before clicking 'Load'");
19198
19216
  }
19199
19217
  else {
19200
19218
  thisClass.fileSupport();
19201
- let reader = new FileReader();
19202
- reader.onload = async function(e) {
19203
- let imageStr = e.target.result; // or = reader.result;
19204
- await thisClass.loadPng(imageStr);
19205
- };
19206
- reader.readAsText(file);
19219
+
19220
+ let bAppend = true;
19221
+ let bmmCIF = false;
19222
+ let bPng = true;
19223
+ await me.htmlCls.eventsCls.readFile(bAppend, files, 0, '', bmmCIF, bPng);
19207
19224
  }
19208
19225
  });
19209
19226
  }
19210
19227
 
19211
- async loadPng(imageStr, command) { let me = this.icn3dui, ic = me.icn3d;
19228
+ // async loadPng(imageStr, command) { let me = this.icn3dui, ic = me.icn3d;
19229
+ async loadPng(imageStr) { let me = this.icn3dui, ic = me.icn3d;
19212
19230
  let matchedStr = 'Share Link: ';
19213
19231
  let pos = imageStr.indexOf(matchedStr);
19214
19232
  let matchedStrState = "Start of state file======\n";
19215
19233
  let posState = imageStr.indexOf(matchedStrState);
19234
+
19235
+ let data = '', statefile = '';
19236
+
19216
19237
  if(pos == -1 && posState == -1) {
19217
19238
  var aaa = 1; //alert('Please load a PNG image saved by clicking the menu "File > Save File > iCn3D PNG Image"...');
19218
19239
  }
@@ -19226,13 +19247,14 @@ class SetHtml {
19226
19247
  let posData = imageStr.indexOf(matchedStrData);
19227
19248
  ic.bInputfile =(posData == -1) ? false : true;
19228
19249
  ic.bInputPNGWithData = ic.bInputfile;
19229
- let commandStr = (command) ? command.replace(/;/g, "\n") : '';
19250
+ // let commandStr = (command) ? command.replace(/;/g, "\n") : '';
19251
+ let commandStr = '';
19230
19252
 
19231
- let statefile;
19232
- if(ic.bInputfile) {
19253
+ // let statefile;
19254
+ // if(ic.bInputfile) {
19233
19255
  let posDataEnd = imageStr.indexOf("End of data file======\n");
19234
- let data = imageStr.substr(posData + matchedStrData.length, posDataEnd - posData - matchedStrData.length);
19235
- ic.InputfileData = (ic.InputfileData) ? ic.InputfileData + '\nENDMDL\n' + data : data;
19256
+ data = imageStr.substr(posData + matchedStrData.length, posDataEnd - posData - matchedStrData.length);
19257
+ // ic.InputfileData = (ic.InputfileData) ? ic.InputfileData + '\nENDMDL\n' + data : data;
19236
19258
 
19237
19259
  let matchedStrType = "Start of type file======\n";
19238
19260
  let posType = imageStr.indexOf(matchedStrType);
@@ -19246,7 +19268,8 @@ class SetHtml {
19246
19268
  statefile = imageStr.substr(posState + matchedStrState.length, posStateEnd - posState- matchedStrState.length);
19247
19269
  //statefile = decodeURIComponent(statefile);
19248
19270
  statefile = decodeURIComponent(statefile + "\n" + commandStr);
19249
-
19271
+
19272
+ /*
19250
19273
  if(type === 'pdb') {
19251
19274
  await ic.pdbParserCls.loadPdbData(data);
19252
19275
 
@@ -19285,10 +19308,13 @@ class SetHtml {
19285
19308
  //await ic.loadScriptCls.loadScript(statefile, true);
19286
19309
  }
19287
19310
 
19288
- await ic.loadScriptCls.loadScript(statefile, true);
19311
+ await ic.loadScriptCls.loadScript(statefile, true);
19289
19312
 
19290
19313
  me.htmlCls.clickMenuCls.setLogCmd('load iCn3D PNG image ' + $("#" + me.pre + "pngimage").val(), false);
19314
+ */
19291
19315
  }
19316
+
19317
+ return {'pdb': data, 'statefile': statefile};
19292
19318
  }
19293
19319
 
19294
19320
  fileSupport() {
@@ -36874,7 +36900,7 @@ class Contact {
36874
36900
  for (let j in neighbors) {
36875
36901
  let atom = neighbors[j];
36876
36902
 
36877
- if(!ic.crossstrucinter && oriAtom.structure != atom.structure) continue;
36903
+ if(bInteraction && !ic.crossstrucinter && oriAtom.structure != atom.structure) continue;
36878
36904
 
36879
36905
  // exclude the target atoms
36880
36906
  if(!bIncludeTarget && atom.serial in atomlistTarget) continue;
@@ -46816,12 +46842,14 @@ class Annotation {
46816
46842
  chainHash[chainid] = 1;
46817
46843
  }
46818
46844
  $("#" + ic.pre + "dl_annotations > .icn3d-annotation").hide();
46845
+
46819
46846
  for(let chainid in chainHash) {
46820
46847
  if($("#" + ic.pre + "anno_" + chainid).length) {
46821
46848
  $("#" + ic.pre + "anno_" + chainid).show();
46822
46849
  }
46850
+
46823
46851
  let atom = ic.firstAtomObjCls.getFirstCalphaAtomObj(ic.chains[chainid]);
46824
- if(atom.resn !== undefined) {
46852
+ if(atom && atom.resn !== undefined) {
46825
46853
  let oneLetterRes = me.utilsCls.residueName2Abbr(atom.resn.substr(0, 3));
46826
46854
  $("#" + ic.pre + "anno_" + oneLetterRes).show();
46827
46855
  }
@@ -49134,6 +49162,7 @@ class HlUpdate {
49134
49162
  if(chainArray2d !== undefined) {
49135
49163
  for(let i = 0, il = chainArray2d.length; i < il; ++i) {
49136
49164
  let hlatoms = me.hashUtilsCls.intHash(ic.chains[chainArray2d[i]], ic.hAtoms);
49165
+ if(!ic.chains[chainArray2d[i]]) continue;
49137
49166
  let ratio = 1.0 * Object.keys(hlatoms).length / Object.keys(ic.chains[chainArray2d[i]]).length;
49138
49167
 
49139
49168
  let firstAtom = ic.firstAtomObjCls.getFirstCalphaAtomObj(hlatoms);
@@ -50362,6 +50391,7 @@ class GetGraph {
50362
50391
  let residLabel = '1_1_' + resid;
50363
50392
  //if(cnt > 0) nodeStr += ', ';
50364
50393
  let colorStr = (atom.color) ? atom.color.getHexString().toUpperCase() : '000';
50394
+
50365
50395
  nodeArray.push('{"id": "' + resName + '", "r": "' + residLabel + '", "s": "' + setName + '", "x": ' + atom.coord.x.toFixed(0)
50366
50396
  + ', "y": ' + atom.coord.y.toFixed(0) + ', "c": "' + colorStr + '"}');
50367
50397
  if(cnt > 0 && prevChain == atom.chain &&(ic.resid2ncbi[atom.resi] == ic.resid2ncbi[prevResi] + 1 || ic.resid2ncbi[atom.resi] == ic.resid2ncbi[prevResi]) ) {
@@ -57392,7 +57422,8 @@ class PdbParser {
57392
57422
  await ic.mmcifParserCls.loadMmcifData(data);
57393
57423
  }
57394
57424
  else if(type === 'icn3dpng') {
57395
- await me.htmlCls.setHtmlCls.loadPng(data, command);
57425
+ // await me.htmlCls.setHtmlCls.loadPng(data, command);
57426
+ await me.htmlCls.setHtmlCls.loadPng(data);
57396
57427
  }
57397
57428
  else if(type === 'pae') {
57398
57429
  me.htmlCls.dialogCls.openDlg('dl_alignerrormap', 'Show Predicted Aligned Error (PAE) map');
@@ -57421,7 +57452,7 @@ class PdbParser {
57421
57452
  if(!ic.bStatefile) ic.init(bKeepCmd);
57422
57453
  }
57423
57454
 
57424
- let hAtoms = ic.loadPDBCls.loadPDB(data, pdbid, bOpm, undefined, undefined, bAppend, type, bEsmfold); // defined in the core library
57455
+ let hAtoms = await ic.loadPDBCls.loadPDB(data, pdbid, bOpm, undefined, undefined, bAppend, type, bEsmfold); // defined in the core library
57425
57456
 
57426
57457
  if(me.cfg.opmid === undefined) ic.ParserUtilsCls.transformToOpmOri(pdbid);
57427
57458
 
@@ -57466,9 +57497,7 @@ class PdbParser {
57466
57497
  await this.applyCommandDssp(bAppend);
57467
57498
  }
57468
57499
  else {
57469
- // could this line be removed?
57470
57500
  await this.loadPdbDataRender(bAppend);
57471
-
57472
57501
  if(!me.bNode) await ic.ParserUtilsCls.checkMemProteinAndRotate();
57473
57502
 
57474
57503
  /// if(ic.deferredOpm !== undefined) ic.deferredOpm.resolve();
@@ -57514,8 +57543,37 @@ class PdbParser {
57514
57543
  ic.definedSetsCls.setModeAndDisplay('all');
57515
57544
  }
57516
57545
 
57546
+ if(ic.struct_statefile) {
57547
+ for(let i = 0, il = ic.struct_statefile.length; i < il; ++i) {
57548
+ await this.execStatefile(ic.struct_statefile[i].structure, ic.struct_statefile[i].statefile);
57549
+ }
57550
+ }
57551
+
57517
57552
  // if(me.deferred !== undefined) me.deferred.resolve(); /// if(ic.deferred2 !== undefined) ic.deferred2.resolve();
57518
57553
  }
57554
+
57555
+ async execStatefile(structure, statefile) {let ic = this.icn3d, me = ic.icn3dui;
57556
+ // if(!statefile) return;
57557
+
57558
+ let commandArray = statefile.trim().split('\n');
57559
+ commandArray = ['select $' + structure].concat(commandArray);
57560
+ ic.STATENUMBER = commandArray.length;
57561
+ ic.CURRENTNUMBER = 0;
57562
+ let bStrict = true;
57563
+
57564
+ let hAtoms = me.hashUtilsCls.cloneHash(ic.hAtoms);
57565
+ let commands = ic.commands;
57566
+
57567
+ // reset ic.hAtoms
57568
+ ic.hAtoms = {};
57569
+ ic.commands = commandArray;
57570
+
57571
+ await ic.loadScriptCls.execCommands(ic.CURRENTNUMBER, ic.STATENUMBER-1, ic.STATENUMBER, bStrict);
57572
+
57573
+ // revert back to the original set
57574
+ ic.hAtoms = me.hashUtilsCls.cloneHash(hAtoms);
57575
+ ic.commands = commands.concat(ic.commands);
57576
+ }
57519
57577
  }
57520
57578
 
57521
57579
  /**
@@ -62863,7 +62921,7 @@ class LoadPDB {
62863
62921
 
62864
62922
  // modified from iview (http://istar.cse.cuhk.edu.hk/iview/)
62865
62923
  //This PDB parser feeds the viewer with the content of a PDB file, pdbData.
62866
- loadPDB(src, pdbid, bOpm, bVector, bMutation, bAppend, type, bEsmfold) { let ic = this.icn3d, me = ic.icn3dui;
62924
+ async loadPDB(src, pdbid, bOpm, bVector, bMutation, bAppend, type, bEsmfold) { let ic = this.icn3d, me = ic.icn3dui;
62867
62925
  let hAtoms = {};
62868
62926
 
62869
62927
  let bNMR = false;
@@ -62874,6 +62932,8 @@ class LoadPDB {
62874
62932
 
62875
62933
  if(!ic.atoms) bAppend = false;
62876
62934
 
62935
+ if(ic.statefileArray) ic.struct_statefile = [];
62936
+
62877
62937
  let serial, moleculeNum;
62878
62938
  if(!bMutation && !bAppend) {
62879
62939
  ic.init();
@@ -63063,11 +63123,14 @@ class LoadPDB {
63063
63123
 
63064
63124
  ic.organism = ic.organism.substr(0, ic.organism.length - 1);
63065
63125
  } else if (record === 'ENDMDL') {
63126
+ if(ic.statefileArray) {
63127
+ ic.struct_statefile.push({'structure': structure, 'statefile': ic.statefileArray[moleculeNum - 1]});
63128
+ }
63129
+
63066
63130
  ++moleculeNum;
63067
63131
  id = ic.defaultPdbId;
63068
63132
 
63069
63133
  structure = this.getStructureId(id, moleculeNum, bMutation);
63070
-
63071
63134
  //helices = [];
63072
63135
  //sheets = [];
63073
63136
  if(!bNMR) {
@@ -63330,6 +63393,10 @@ class LoadPDB {
63330
63393
  if(ic.chains[chainNum] === undefined) ic.chains[chainNum] = {};
63331
63394
  ic.chains[chainNum] = me.hashUtilsCls.unionHash2Atoms(ic.chains[chainNum], chainsTmp, ic.atoms);
63332
63395
 
63396
+ if(ic.statefileArray) {
63397
+ ic.struct_statefile.push({'structure': structure, 'statefile': ic.statefileArray[moleculeNum - 1]});
63398
+ }
63399
+
63333
63400
  //if(!bMutation) this.adjustSeq(ic.chainMissingResidueArray);
63334
63401
  this.adjustSeq(ic.chainMissingResidueArray);
63335
63402
 
@@ -68280,14 +68347,16 @@ class LoadScript {
68280
68347
  for(i=start; i <= end; ++i) {
68281
68348
  let bFinalStep =(i === steps - 1) ? true : false;
68282
68349
 
68283
- if(!ic.commands[i].trim()) continue;
68350
+ if(!ic.commands[i] || !ic.commands[i].trim()) {
68351
+ continue;
68352
+ }
68353
+
68284
68354
  let nAtoms = (ic.atoms) ? Object.keys(ic.atoms).length : 0;
68285
68355
 
68286
68356
  if(nAtoms == 0 && ic.commands[i].indexOf('load') == -1) continue;
68287
68357
 
68288
68358
  let strArray = ic.commands[i].split("|||");
68289
68359
  let command = strArray[0].trim();
68290
-
68291
68360
  // sometimes URL has an ID input, then load a structure in commands
68292
68361
  //if(ic.inputid) ic.bNotLoadStructure = true;
68293
68362
 
@@ -69642,9 +69711,11 @@ class Selection {
69642
69711
  ic.hAtoms = {};
69643
69712
  ic.dAtoms = {};
69644
69713
 
69645
- for(let i in ic.chains) {
69646
- ic.hAtoms = me.hashUtilsCls.unionHash(ic.hAtoms, ic.chains[i]);
69647
- //ic.dAtoms = me.hashUtilsCls.unionHash(ic.dAtoms, ic.chains[i]);
69714
+ for(let structure in ic.structures) {
69715
+ let chainidArray = ic.structures[structure];
69716
+ for(let i = 0, il = chainidArray.length; i < il; ++i) {
69717
+ ic.hAtoms = me.hashUtilsCls.unionHash(ic.hAtoms, ic.chains[chainidArray[i]]);
69718
+ }
69648
69719
  }
69649
69720
 
69650
69721
  ic.dAtoms = me.hashUtilsCls.cloneHash(ic.hAtoms);
@@ -79019,7 +79090,7 @@ class ShareLink {
79019
79090
  });
79020
79091
  }
79021
79092
 
79022
- shareLinkUrl(bAllCommands, bOutputCmd) { let ic = this.icn3d, me = ic.icn3dui;
79093
+ shareLinkUrl(bAllCommands, bOutputCmd, bStatefile) { let ic = this.icn3d, me = ic.icn3dui;
79023
79094
  let url = me.htmlCls.baseUrl + "icn3d/?";
79024
79095
  let outputCmd = '';
79025
79096
  if(me.cfg.bSidebyside) url = me.htmlCls.baseUrl + "icn3d/full2.html?";
@@ -79188,7 +79259,7 @@ class ShareLink {
79188
79259
  }
79189
79260
 
79190
79261
  // keep all commands in statefile
79191
- statefile += prevCommandStr + "\n";
79262
+ if(prevCommandStr.indexOf('load ') == -1) statefile += prevCommandStr + "\n";
79192
79263
 
79193
79264
  prevCommandStr = commandStr;
79194
79265
  }
@@ -79218,14 +79289,14 @@ class ShareLink {
79218
79289
  url = url.replace(new RegExp('blast_rep_id=!','g'), 'blast_rep_id=' + id + '_');
79219
79290
  }
79220
79291
 
79221
- return (bOutputCmd) ? outputCmd : url;
79292
+ return (bStatefile) ? statefile : (bOutputCmd) ? outputCmd : url;
79222
79293
  }
79223
79294
 
79224
79295
  getPngText() { let ic = this.icn3d; ic.icn3dui;
79225
- let url; // output state file if ic.bInputfile is true or the URL is more than 4000 chars
79226
79296
  let bAllCommands = true;
79227
79297
 
79228
79298
  let text = "";
79299
+ /*
79229
79300
  if(ic.bInputfile) {
79230
79301
  url = this.shareLinkUrl(bAllCommands); // output state file if ic.bInputfile is true or the URL is more than 4000 chars
79231
79302
 
@@ -79240,7 +79311,6 @@ class ShareLink {
79240
79311
 
79241
79312
  text += "Start of data file======\n";
79242
79313
  //text += ic.InputfileData;
79243
- /// text += ic.saveFileCls.getPDBHeader();
79244
79314
  text += ic.saveFileCls.getAtomPDB(ic.atoms);
79245
79315
 
79246
79316
  text += "End of data file======\n";
@@ -79265,7 +79335,38 @@ class ShareLink {
79265
79335
  text += "\nShare Link: " + url;
79266
79336
  }
79267
79337
  }
79338
+ */
79339
+
79340
+ // always output PDB and commands
79341
+ text += "\nStart of type file======\n";
79342
+ text += "pdb\n";
79343
+ text += "End of type file======\n";
79344
+
79345
+ text += "Start of data file======\n";
79346
+ text += ic.saveFileCls.getAtomPDB(ic.atoms);
79347
+ text += "End of data file======\n";
79348
+
79349
+ let bStatefile = true;
79350
+ let commands = this.shareLinkUrl(bAllCommands, undefined, bStatefile);
79351
+ text += "Start of state file======\n";
79352
+ text += commands + "\n";
79353
+ text += "End of state file======\n";
79354
+ /*
79355
+ if(ic.bInputfile) {
79356
+ url = this.shareLinkUrl(bAllCommands); // output state file if ic.bInputfile is true or the URL is more than 4000 chars
79268
79357
 
79358
+ if(url.substr(0,4) == 'http') {
79359
+ text += "\nShare Link: " + url;
79360
+ }
79361
+ }
79362
+ else {
79363
+ url = this.shareLinkUrl();
79364
+ let bTooLong =(url.length > 4000 || url.indexOf('http') !== 0) ? true : false;
79365
+ if(!bTooLong) {
79366
+ text += "\nShare Link: " + url;
79367
+ }
79368
+ }
79369
+ */
79269
79370
  text = text.replace(/!/g, Object.keys(ic.structures)[0] + '_');
79270
79371
 
79271
79372
  return text;
@@ -82101,7 +82202,7 @@ class iCn3DUI {
82101
82202
  //even when multiple iCn3D viewers are shown together.
82102
82203
  this.pre = this.cfg.divid + "_";
82103
82204
 
82104
- this.REVISION = '3.35.0';
82205
+ this.REVISION = '3.36.0';
82105
82206
 
82106
82207
  // In nodejs, iCn3D defines "window = {navigator: {}}"
82107
82208
  this.bNode = (Object.keys(window).length < 2) ? true : false;