icn3d 3.30.1 → 3.30.2

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Files changed (4) hide show
  1. package/icn3d.js +142 -35
  2. package/icn3d.min.js +5 -5
  3. package/icn3d.module.js +142 -35
  4. package/package.json +1 -1
package/icn3d.js CHANGED
@@ -11995,12 +11995,69 @@ class SetDialog {
11995
11995
 
11996
11996
  group2tpl['Other'] = ['CuZnSuperoxideDismutase_1hl5C_human', 'ECadherin_4zt1A_human_n2', 'LaminAC_1ifrA_human', 'ORF7a_1xakA_virus'];
11997
11997
 
11998
+ let tpl2strandsig = {};
11999
+ tpl2strandsig['ASF1A_2iijA_human'] = "A A' B C C' E F G G+";
12000
+ tpl2strandsig['B2Microglobulin_7phrL_human_C1'] = "A B C C' D E F G";
12001
+ tpl2strandsig['BArrestin1_4jqiA_rat_n1'] = "A- A A' B C C' E F G";
12002
+ tpl2strandsig['BTLA_2aw2A_human_Iset'] = "A A' B C C' D E F G";
12003
+ tpl2strandsig['C3_2qkiD_human_n1'] = "A A' B C C' E F G";
12004
+ tpl2strandsig['CD19_6al5A_human_C2orV-n1'] = "A' B C C' D E F G";
12005
+ tpl2strandsig['CD28_1yjdC_human_V'] = "A A' B C C' C'' D E F G";
12006
+ tpl2strandsig['CD2_1hnfA_human_C2-n2'] = "A B C C' E F G";
12007
+ tpl2strandsig['CD2_1hnfA_human_V-n1'] = "A' B C C' C'' D E F G";
12008
+ tpl2strandsig['CD3d_6jxrd_human_Iset'] = "A B C D E F G";
12009
+ tpl2strandsig['CD3e_6jxrf_human_Iset'] = "A B C C' D E F G";
12010
+ tpl2strandsig['CD3g_6jxrg_human_Iset'] = "A B C C' E F G G+";
12011
+ tpl2strandsig['CD8a_1cd8A_human_V'] = "A A' B C C' C'' D E F G";
12012
+ tpl2strandsig['CoAtomerGamma1_1r4xA_human'] = "A- A B C D E F G";
12013
+ tpl2strandsig['Contactin1_2ee2A_human_FN3-n9'] = "A A' B C C' E F G";
12014
+ tpl2strandsig['Contactin1_3s97C_human_C2-n2'] = "A A' B C D E F G";
12015
+ tpl2strandsig['CuZnSuperoxideDismutase_1hl5C_human'] = "A- A B C C' E F G";
12016
+ tpl2strandsig['ECadherin_4zt1A_human_n2'] = "A' B C D E F G";
12017
+ tpl2strandsig['Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4'] = "A--- A-- A- A B C C' C'' D E F G";
12018
+ tpl2strandsig['FAB-HEAVY_5esv_C1-n2'] = "A B C D E F G";
12019
+ tpl2strandsig['FAB-HEAVY_5esv_V-n1'] = "A B C C' C'' D E F G";
12020
+ tpl2strandsig['FAB-LIGHT_5esv_C1-n2'] = "A B C C' E F G";
12021
+ tpl2strandsig['FAB-LIGHT_5esv_V-n1'] = "A A' B C C' C'' D E F G";
12022
+ tpl2strandsig['GHR_1axiB_human_FN3-n1'] = "A B C C' D E F G";
12023
+ tpl2strandsig['ICOS_6x4gA_human_V'] = "A B C C' C'' D E F G";
12024
+ tpl2strandsig['IL6Rb_1bquB_human_FN3-n2'] = "A B C C' E F G";
12025
+ tpl2strandsig['IL6Rb_1bquB_human_FN3-n3'] = "A B C C' E F G";
12026
+ tpl2strandsig['InsulinR_8guyE_human_FN3-n1'] = "A B C C' E F G";
12027
+ tpl2strandsig['InsulinR_8guyE_human_FN3-n2'] = "A B C C' E F G";
12028
+ tpl2strandsig['IsdA_2iteA_bacteria'] = "A- A B C C' D E F G";
12029
+ tpl2strandsig['JAM1_1nbqA_human_VorIset-n2'] = "A A' B C C' D E F G";
12030
+ tpl2strandsig['LAG3_7tzgD_human_C2-n2'] = "A A' B C C' D E F G";
12031
+ tpl2strandsig['LAG3_7tzgD_human_V-n1'] = "A' B C C' D E F G";
12032
+ tpl2strandsig['LaminAC_1ifrA_human'] = "A- A B C C' E E+ F G";
12033
+ tpl2strandsig['MHCIa_7phrH_human_C1'] = "A B C C' D E F G";
12034
+ tpl2strandsig['MPT63_1lmiA_bacteria'] = "A-- A- A BC C' E F G";
12035
+ tpl2strandsig['NaCaExchanger_2fwuA_dog_n2'] = "A A' B C C' E F G";
12036
+ tpl2strandsig['NaKATPaseTransporterBeta_2zxeB_spurdogshark']= "A A' B C D E F G";
12037
+ tpl2strandsig['ORF7a_1xakA_virus'] = "A' B C D E F G";
12038
+ tpl2strandsig['PD1_4zqkB_human_V'] = "A A' B C C' D E F G";
12039
+ tpl2strandsig['PDL1_4z18B_human_V-n1'] = "A A' B C C' C'' D E F G";
12040
+ tpl2strandsig['Palladin_2dm3A_human_Iset-n1'] = "A A' B C C' D E F G";
12041
+ tpl2strandsig['RBPJ_6py8C_human_Unk-n1'] = "A A' B C C' E F G";
12042
+ tpl2strandsig['RBPJ_6py8C_human_Unk-n2'] = "A B C D E F G";
12043
+ tpl2strandsig['Sidekick2_1wf5A_human_FN3-n7'] = "A B C C' E F G";
12044
+ tpl2strandsig['Siglec3_5j0bB_human_C2-n2'] = "A A' B C D E F G";
12045
+ tpl2strandsig['TCRa_6jxrm_human_C1-n2'] = "A B C D E F G";
12046
+ tpl2strandsig['TCRa_6jxrm_human_V-n1'] = "A A' B C C' C'' D E F G";
12047
+ tpl2strandsig['TEAD1_3kysC_human'] = "A A+ A' B C C' E F G G+";
12048
+ tpl2strandsig['TP34_2o6cA_bacteria'] = "A- A B C C' D E F G";
12049
+ tpl2strandsig['TP47_1o75A_bacteria'] = "A B C C' D E F G";
12050
+ tpl2strandsig['Titin_4uowM_human_Unk-n152'] = "A A' B C C' D E F G";
12051
+ tpl2strandsig['VISTA_6oilA_human_V'] = "A A' B C C' C'' D E F G G+";
12052
+ tpl2strandsig['VNAR_1t6vN_shark_V'] = "A A' B C C' D E F G";
12053
+ tpl2strandsig['VTCN1_Q7Z7D3_human_V-n2'] = "A B C C' D E F G G+";
12054
+
11998
12055
  let html = '';
11999
12056
  for(let group in group2tpl) {
12000
12057
  html += "<optgroup label='" + group + "'>";
12001
12058
  for(let i = 0, il = group2tpl[group].length; i < il; ++i) {
12002
12059
  let template = group2tpl[group][i];
12003
- html += me.htmlCls.optionStr + "'" + template + "'>" + template + "</option>";
12060
+ html += me.htmlCls.optionStr + "'" + template + "'>" + template + ", Strands: " + tpl2strandsig[template] + "</option>";
12004
12061
  }
12005
12062
  html += "</optgroup>";
12006
12063
  }
@@ -12388,6 +12445,7 @@ class Events {
12388
12445
  me.htmlCls.HEIGHT = $( window ).height();
12389
12446
  ic.applyCenterCls.setWidthHeight(me.htmlCls.WIDTH, me.htmlCls.HEIGHT);
12390
12447
  ic.drawCls.draw();
12448
+
12391
12449
  ic.resizeCanvasCls.openFullscreen($("#" + me.pre + "canvas")[0]);
12392
12450
  });
12393
12451
 
@@ -26778,7 +26836,8 @@ class Axes {
26778
26836
  createArrow(dir, origin, axisLen, color, headLength, headWidth, bGlycan) { let ic = this.icn3d, me = ic.icn3dui;
26779
26837
  if(me.bNode) return;
26780
26838
 
26781
- let coneGeometry = new THREE.CylinderBufferGeometry( 0, 0.5, 1, 32, 1 );
26839
+ // let coneGeometry = new THREE.CylinderBufferGeometry( 0, 0.5, 1, 32, 1 );
26840
+ let coneGeometry = new THREE.CylinderGeometry( 0, 0.5, 1, 32, 1 );
26782
26841
  //coneGeometry.translate( 0, - 0.5, 0 );
26783
26842
  coneGeometry.translate( 0, 0.5, 0 );
26784
26843
  let material;
@@ -37931,10 +37990,15 @@ class AnnoIg {
37931
37990
  if(!info) continue;
37932
37991
 
37933
37992
  let tmscore = info.score;
37934
- let igType = ic.ref2igtype[info.refpdbname];
37935
- let confidance = (parseFloat(tmscore) < 0.75 ) ? '?' : '';
37936
- titleArray.push(igType + confidance + ' (TM:' + parseFloat(tmscore).toFixed(2) + ')');
37937
- fullTitleArray.push(igType + confidance + ' (TM:' + parseFloat(tmscore).toFixed(2) + '), template: ' + info.refpdbname + ', Seq. identity: ' + parseFloat(info.seqid).toFixed(2) + ', aligned residues: ' + info.nresAlign);
37993
+ // let igType = ic.ref2igtype[info.refpdbname];
37994
+ // let confidance = (parseFloat(tmscore) < 0.75 ) ? '?' : '';
37995
+ // titleArray.push(igType + confidance + ' (TM:' + parseFloat(tmscore).toFixed(2) + ')');
37996
+ // fullTitleArray.push(igType + confidance + ' (TM:' + parseFloat(tmscore).toFixed(2) + '), template: ' + info.refpdbname + ', Seq. identity: ' + parseFloat(info.seqid).toFixed(2) + ', aligned residues: ' + info.nresAlign);
37997
+
37998
+ let igType = (parseFloat(tmscore) < 0.75 ) ? 'Ig' : ic.ref2igtype[info.refpdbname];
37999
+ titleArray.push(igType + ' (TM:' + parseFloat(tmscore).toFixed(2) + ')');
38000
+ fullTitleArray.push(igType + ' (TM:' + parseFloat(tmscore).toFixed(2) + '), template: ' + info.refpdbname + ', Seq. identity: ' + parseFloat(info.seqid).toFixed(2) + ', aligned residues: ' + info.nresAlign);
38001
+
37938
38002
  domainArray.push(igType);
37939
38003
 
37940
38004
  let segs = [];
@@ -38289,15 +38353,13 @@ class AnnoDomain {
38289
38353
  let subdomainArray = domainArray[index].intervals;
38290
38354
  // remove duplicate, e.g., at https://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdb_strview.cgi?v=2&program=icn3d&domain&molinfor&uid=1itw
38291
38355
  let domainFromHash = {}, domainToHash = {};
38292
- let fromArray = [], toArray = [];
38356
+ let fromArray = [], toArray = [], posFromArray = [], posToArray = [];
38293
38357
  let resiHash = {};
38294
38358
  let resCnt = 0;
38295
38359
 
38296
38360
  for(let i = 0, il = subdomainArray.length; i < il; ++i) {
38297
- // let domainFrom = Math.round(subdomainArray[i][0]) - 1; // convert 1-based to 0-based
38298
- // let domainTo = Math.round(subdomainArray[i][1]) - 1;
38299
- let domainFrom = Math.round(subdomainArray[i][0]); // convert 1-based to 0-based
38300
- let domainTo = Math.round(subdomainArray[i][1]);
38361
+ let domainFrom = Math.round(subdomainArray[i][0]) - 1; // convert 1-based to 0-based
38362
+ let domainTo = Math.round(subdomainArray[i][1]) - 1;
38301
38363
 
38302
38364
  if(domainFromHash.hasOwnProperty(domainFrom) || domainToHash.hasOwnProperty(domainTo)) {
38303
38365
  continue; // do nothing for duplicated "from" or "to", e.g, PDBID 1ITW, 5FWI
@@ -38311,6 +38373,9 @@ class AnnoDomain {
38311
38373
  // if(ic.bNCBI || bCalcDirect) {
38312
38374
  fromArray.push(pos2resi[domainFrom]);
38313
38375
  toArray.push(pos2resi[domainTo]);
38376
+
38377
+ posFromArray.push(domainFrom);
38378
+ posToArray.push(domainTo);
38314
38379
  // }
38315
38380
  // else {
38316
38381
  // fromArray.push(domainFrom + ic.baseResi[chnid]);
@@ -38331,9 +38396,9 @@ class AnnoDomain {
38331
38396
 
38332
38397
  if(!ic.resid2domain) ic.resid2domain = {};
38333
38398
  if(!ic.resid2domain[chnid]) ic.resid2domain[chnid] = [];
38334
- for(let i = 0, il = fromArray.length; i < il; ++i) {
38335
- let from = parseInt(fromArray[i]);
38336
- let to = parseInt(toArray[i]);
38399
+ for(let i = 0, il = posFromArray.length; i < il; ++i) {
38400
+ let from = parseInt(posFromArray[i]);
38401
+ let to = parseInt(posToArray[i]);
38337
38402
  for(let j = from; j <= to; ++j) {
38338
38403
  // 0-based
38339
38404
  let obj = {};
@@ -38345,7 +38410,7 @@ class AnnoDomain {
38345
38410
  }
38346
38411
  }
38347
38412
 
38348
- let htmlTmp2 = '<div class="icn3d-seqTitle icn3d-link icn3d-blue" 3ddomain="' +(index+1).toString() + '" from="' + fromArray + '" to="' + toArray + '" shorttitle="' + title + '" index="' + index + '" setname="' + chnid + '_3d_domain_' +(index+1).toString() + '" anno="sequence" chain="' + chnid + '" title="' + fulltitle + '">' + title + ' </div>';
38413
+ let htmlTmp2 = '<div class="icn3d-seqTitle icn3d-link icn3d-blue" 3ddomain="' +(index+1).toString() + '" from="' + posFromArray + '" to="' + posToArray + '" shorttitle="' + title + '" index="' + index + '" setname="' + chnid + '_3d_domain_' +(index+1).toString() + '" anno="sequence" chain="' + chnid + '" title="' + fulltitle + '">' + title + ' </div>';
38349
38414
  let htmlTmp3 = '<span class="icn3d-residueNum" title="residue count">' + resCnt.toString() + ' Res</span>';
38350
38415
  html3 += htmlTmp2 + htmlTmp3 + '<br>';
38351
38416
  let htmlTmp = '<span class="icn3d-seqLine">';
@@ -38385,12 +38450,12 @@ class AnnoDomain {
38385
38450
  if(ic.seqStartLen && ic.seqStartLen[chnid]) html2 += ic.showSeqCls.insertMulGapOverview(chnid, ic.seqStartLen[chnid]);
38386
38451
 
38387
38452
  if(me.cfg.blast_rep_id != chnid) { // regular
38388
- for(let i = 0, il = fromArray.length; i < il; ++i) {
38453
+ for(let i = 0, il = posFromArray.length; i < il; ++i) {
38389
38454
  // let emptyWidth =(i == 0) ? Math.round(ic.seqAnnWidth *(fromArray[i] - ic.baseResi[chnid] - 1) / ic.maxAnnoLength) : Math.round(ic.seqAnnWidth *(fromArray[i] - toArray[i-1] - 1) / ic.maxAnnoLength);
38390
- let emptyWidth =(i == 0) ? Math.round(ic.seqAnnWidth *(fromArray[i]) / ic.maxAnnoLength) : Math.round(ic.seqAnnWidth *(fromArray[i] - toArray[i-1] - 1) / ic.maxAnnoLength);
38455
+ let emptyWidth =(i == 0) ? Math.round(ic.seqAnnWidth *(posFromArray[i]) / ic.maxAnnoLength) : Math.round(ic.seqAnnWidth *(posFromArray[i] - posToArray[i-1] - 1) / ic.maxAnnoLength);
38391
38456
 
38392
38457
  html2 += '<div style="display:inline-block; width:' + emptyWidth + 'px;">&nbsp;</div>';
38393
- html2 += '<div style="display:inline-block; color:white!important; font-weight:bold; background-color:#' + color + '; width:' + Math.round(ic.seqAnnWidth *(toArray[i] - fromArray[i] + 1) / ic.maxAnnoLength) + 'px;" class="icn3d-seqTitle icn3d-link icn3d-blue" 3ddomain="' +(index+1).toString() + '" from="' + fromArray + '" to="' + toArray + '" shorttitle="' + title + '" index="' + index + '" setname="' + chnid + '_3d_domain_' +(index+1).toString() + '" id="' + chnid + '_3d_domain_' + index + '" anno="sequence" chain="' + chnid + '" title="' + fulltitle + '">3D domain ' +(index+1).toString() + '</div>';
38458
+ html2 += '<div style="display:inline-block; color:white!important; font-weight:bold; background-color:#' + color + '; width:' + Math.round(ic.seqAnnWidth *(posToArray[i] - posFromArray[i] + 1) / ic.maxAnnoLength) + 'px;" class="icn3d-seqTitle icn3d-link icn3d-blue" 3ddomain="' +(index+1).toString() + '" from="' + posFromArray + '" to="' + posToArray + '" shorttitle="' + title + '" index="' + index + '" setname="' + chnid + '_3d_domain_' +(index+1).toString() + '" id="' + chnid + '_3d_domain_' + index + '" anno="sequence" chain="' + chnid + '" title="' + fulltitle + '">3D domain ' +(index+1).toString() + '</div>';
38394
38459
  }
38395
38460
  }
38396
38461
  else { // with potential gaps
@@ -39924,7 +39989,7 @@ class Domain3d {
39924
39989
  if(!ic.posid2resid) ic.posid2resid = {};
39925
39990
 
39926
39991
  let substructItem = {};
39927
- let pos2resi = {};
39992
+ let pos2resi = {}; // 0-based
39928
39993
  for(let i = 0; i < residueArray.length; ++i) {
39929
39994
  let resid = residueArray[i];
39930
39995
 
@@ -39956,7 +40021,8 @@ class Domain3d {
39956
40021
 
39957
40022
  //resiArray.push(resi);
39958
40023
  resiArray.push(i+1);
39959
- pos2resi[i+1] = resi;
40024
+ // pos2resi[i+1] = resi;
40025
+ pos2resi[i] = resi;
39960
40026
 
39961
40027
  ic.posid2resid[atom.structure + '_' + atom.chain + '_' + (i+1).toString()] = resid;
39962
40028
  // let residNCBI = ic.resid2ncbi[resid];
@@ -40478,8 +40544,8 @@ class Domain3d {
40478
40544
  //ss: sstype ss_start ss_end x1 y1 z1 x2 y2 z2
40479
40545
  //sstype: 1 (helix), 2 (sheet)
40480
40546
  let sstype = (substruct[k].Sheet) ? 2 : 1;
40481
- let from = pos2resi[substruct[k].From];
40482
- let to = pos2resi[substruct[k].To];
40547
+ let from = pos2resi[substruct[k].From - 1]; // 1-based to 0-based
40548
+ let to = pos2resi[substruct[k].To - 1];
40483
40549
 
40484
40550
  // 1-based residue numbers
40485
40551
  let fromPos = substruct[k].From;
@@ -62428,6 +62494,27 @@ class LoadScript {
62428
62494
  return nameArray;
62429
62495
  }
62430
62496
 
62497
+ updateTransformation(steps) { let ic = this.icn3d; ic.icn3dui;
62498
+ let commandTransformation = (ic.commands[steps-1]) ? ic.commands[steps-1].split('|||') : [];
62499
+
62500
+ if(commandTransformation.length == 2) {
62501
+ let transformation = JSON.parse(commandTransformation[1]);
62502
+
62503
+ ic._zoomFactor = transformation.factor;
62504
+
62505
+ ic.mouseChange.x = transformation.mouseChange.x;
62506
+ ic.mouseChange.y = transformation.mouseChange.y;
62507
+
62508
+ ic.quaternion._x = transformation.quaternion._x;
62509
+ ic.quaternion._y = transformation.quaternion._y;
62510
+ ic.quaternion._z = transformation.quaternion._z;
62511
+ ic.quaternion._w = transformation.quaternion._w;
62512
+ }
62513
+
62514
+ // ic.bRender = true;
62515
+ ic.drawCls.draw();
62516
+ }
62517
+
62431
62518
  async execCommandsBase(start, end, steps, bFinalStep) { let ic = this.icn3d, me = ic.icn3dui;
62432
62519
  let thisClass = this;
62433
62520
  let i;
@@ -62607,7 +62694,10 @@ class LoadScript {
62607
62694
  await thisClass.applyCommandGraphinteraction(command);
62608
62695
  }
62609
62696
  else if(command.indexOf('cartoon 2d domain') == 0) {
62697
+ ic.bRender = true;
62698
+ thisClass.updateTransformation(steps);
62610
62699
  await thisClass.applyCommandCartoon2d(command);
62700
+ ic.bRender = false;
62611
62701
  }
62612
62702
  else if(command.indexOf('set half pae map') == 0) {
62613
62703
  await thisClass.applyCommandAfmap(command);
@@ -62622,7 +62712,10 @@ class LoadScript {
62622
62712
  let pos = command.lastIndexOf(' ');
62623
62713
  let type = command.substr(pos + 1);
62624
62714
 
62715
+ ic.bRender = true;
62716
+ thisClass.updateTransformation(steps);
62625
62717
  await ic.cartoon2dCls.draw2Dcartoon(type);
62718
+ ic.bRender = false;
62626
62719
  }
62627
62720
  else if(command.indexOf('add msa track') == 0) {
62628
62721
  //add msa track | chainid " + chainid + " | startpos " + startpos + " | type " + type + " | fastaList " + fastaList
@@ -62660,7 +62753,7 @@ class LoadScript {
62660
62753
  await ic.applyCommandCls.applyCommand(ic.commands[i]);
62661
62754
  }
62662
62755
  }
62663
-
62756
+
62664
62757
  //if(i === steps - 1) {
62665
62758
  if(i === steps || bFinalStep) {
62666
62759
  this.renderFinalStep(i);
@@ -67290,19 +67383,25 @@ class Dssp {
67290
67383
  }
67291
67384
 
67292
67385
  // 2b. remove strands with less than 3 residues except G strand
67386
+ let removeDomainidHash = {};
67293
67387
  for(let il = strandArray.length, i = il - 1; i >= 0; --i) {
67294
- let strandTmp = strandArray[i].strand.substr(0, 1);
67388
+ // let strandTmp = strandArray[i].strand.substr(0, 1);
67389
+ let strandTmp = strandArray[i].strand;
67295
67390
  if(strandTmp != 'G' && strandArray[i].endRefnum - strandArray[i].startRefnum + 1 < 3) { // remove the strand
67296
- if(strandTmp == 'B' || strandTmp == 'C' || strandTmp == 'E' || strandTmp == 'F') {
67297
- if(!me.bNode) console.log("Some of the Ig strands B, C, E, F are removed since they are too short...");
67298
- return false;
67299
- }
67300
-
67301
67391
  if(i != il - 1) { // modify
67302
67392
  strandArray[i + 1].loopResCnt += strandArray[i].loopResCnt + parseInt(strandArray[i].endResi) - parseInt(strandArray[i].startResi) + 1;
67303
67393
  }
67304
67394
 
67305
67395
  strandArray.splice(i, 1);
67396
+
67397
+ if(strandTmp == 'B' || strandTmp == 'C' || strandTmp == 'E' || strandTmp == 'F') {
67398
+ if(!me.bNode) console.log("Ig strand " + strandTmp + " is removed since it is too short...");
67399
+
67400
+ let resid = chnid + '_' + strandArray[i].startResi;
67401
+ let domainid = ic.resid2domainid[resid];
67402
+ removeDomainidHash[domainid] = 1;
67403
+ continue;
67404
+ }
67306
67405
  }
67307
67406
  }
67308
67407
 
@@ -67492,6 +67591,14 @@ class Dssp {
67492
67591
  prevStrand = currStrand;
67493
67592
  prevStrandCnt = strandCnt - 1;
67494
67593
 
67594
+ // remove domians without B,C,E,F strands
67595
+ if(removeDomainidHash.hasOwnProperty(domainid)) {
67596
+ delete ic.resid2refnum[residueid];
67597
+ delete ic.resid2domainid[residueid];
67598
+
67599
+ continue;
67600
+ }
67601
+
67495
67602
  // assign the adjusted reference numbers
67496
67603
  ic.resid2refnum[residueid] = refnumLabel;
67497
67604
  ic.resid2domainid[residueid] = domainid;
@@ -70273,7 +70380,7 @@ class Cartoon2d {
70273
70380
  idStr = idStr.substr(0, idStr.indexOf('-'));
70274
70381
  }
70275
70382
  else {
70276
- idStr = idStr.substr(idStr.lastIndexOf('_') + 1);
70383
+ idStr = idStr; //idStr.substr(idStr.lastIndexOf('_') + 1);
70277
70384
  }
70278
70385
 
70279
70386
  return idStr;
@@ -70970,14 +71077,14 @@ class ResizeCanvas {
70970
71077
  !document.webkitFullscreenElement && !document.msFullscreenElement) {
70971
71078
  if(elem.requestFullscreen) {
70972
71079
  elem.requestFullscreen();
70973
- } else if(elem.mozRequestFullScreen) { /* Firefox */
71080
+ } else if(elem.mozRequestFullScreen) { // Firefox
70974
71081
  elem.mozRequestFullScreen();
70975
- } else if(elem.webkitRequestFullscreen) { /* Chrome, Safari and Opera */
71082
+ } else if(elem.webkitRequestFullscreen) { // Chrome, Safari and Opera
70976
71083
  elem.webkitRequestFullscreen();
70977
- } else if(elem.msRequestFullscreen) { /* IE/Edge */
71084
+ } else if(elem.msRequestFullscreen) { // IE/Edge
70978
71085
  elem.msRequestFullscreen();
70979
71086
  }
70980
- }
71087
+ }
70981
71088
  }
70982
71089
 
70983
71090
  //Rotate the structure in one of the directions: "left", "right", "up", and "down".
@@ -75668,7 +75775,7 @@ class iCn3DUI {
75668
75775
  //even when multiple iCn3D viewers are shown together.
75669
75776
  this.pre = this.cfg.divid + "_";
75670
75777
 
75671
- this.REVISION = '3.30.0';
75778
+ this.REVISION = '3.30.1';
75672
75779
 
75673
75780
  // In nodejs, iCn3D defines "window = {navigator: {}}"
75674
75781
  this.bNode = (Object.keys(window).length < 2) ? true : false;