icn3d 3.29.12 → 3.29.13

package/icn3d.js

@@ -37828,7 +37828,13 @@ class AnnoIg {
 
             // 2. remove strands with less than 3 residues except G strand
             for(let il = strandArray.length, i = il - 1; i >= 0; --i) {
-                if(strandArray[i].strand.substr(0, 1) != 'G' && strandArray[i].endRefnum - strandArray[i].startRefnum + 1 < 3) { // remove the strand
+                let strandTmp = strandArray[i].strand.substr(0, 1);
+                if(strandTmp != 'G' && strandArray[i].endRefnum - strandArray[i].startRefnum + 1 < 3) { // remove the strand
+                    if(strandTmp == 'B' || strandTmp == 'C' || strandTmp == 'E' || strandTmp == 'F') {
+                        if(!me.bNode) console.log("Some of the Ig strands B, C, E, F are missing...");
+                        return {html: '', html2: '', html3: ''};
+                    }
+
                     if(i != il - 1) { // modify 
                         strandArray[i + 1].loopResCnt += strandArray[i].loopResCnt + parseInt(strandArray[i].endResi) - parseInt(strandArray[i].startResi) + 1;
                     }
@@ -66539,7 +66545,6 @@ class Dssp {
             if(!bRound1 && queryData[0].segs) {
                 let bBstrand = false, bCstrand = false, bEstrand = false, bFstrand = false;
                 let bBSheet = true, bCSheet = true, bESheet = true, bFSheet = true;
-                let BCnt = 0, CCnt = 0, ECnt = 0, FCnt = 0;
                 let chainid = domainid.split(',')[0];
 
                 for(let j = 0, jl = queryData[0].segs.length; j < jl; ++j) {
@@ -66552,37 +66557,32 @@ class Dssp {
                         bBstrand = true;
                         let atom = ic.firstAtomObjCls.getFirstAtomObj(ic.residues[resid]);
                         if(atom.ss == 'helix') bBSheet = false;
-                        ++BCnt;
                     }
                     else if(q_start > 3540 && q_start < 3560) {
                         bCstrand = true;
                         let atom = ic.firstAtomObjCls.getFirstAtomObj(ic.residues[resid]);
                         if(atom.ss == 'helix') bCSheet = false;
-                        ++CCnt;
                     }
                     else if(q_start > 7540 && q_start < 7560) {
                         bEstrand = true;
                         let atom = ic.firstAtomObjCls.getFirstAtomObj(ic.residues[resid]);
                         if(atom.ss == 'helix') bESheet = false; 
-                        ++ECnt;                    
                     }
                     else if(q_start > 8540 && q_start < 8560) {
                         bFstrand = true;
                         let atom = ic.firstAtomObjCls.getFirstAtomObj(ic.residues[resid]);
                         if(atom.ss == 'helix') bFSheet = false;
-                        ++FCnt;
                     }
 
                     //if(bBstrand && bCstrand && bEstrand && bFstrand && bGstrand) break;
                     if(bBstrand && bCstrand && bEstrand && bFstrand) break;
                 }
-   
-                if(!(bBstrand && bCstrand && bEstrand && bFstrand) || !(bBSheet && bCSheet && bESheet && bFSheet)
-                  || BCnt < 3 || CCnt < 3 || ECnt < 3 || FCnt < 3) {
+
+                if(!(bBstrand && bCstrand && bEstrand && bFstrand) || !(bBSheet && bCSheet && bESheet && bFSheet)) {
                 // if(!(bBstrand && bCstrand && bEstrand && bFstrand)) {
                     if(!me.bNode && !(bBstrand && bCstrand && bEstrand && bFstrand)) console.log("Some of the Ig strands B, C, E, F are missing in the domain " + domainid + "...");
                     if(!me.bNode && !(bBSheet && bCSheet && bESheet && bFSheet)) console.log("Some of the Ig strands B, C, E, F are not beta sheets...");
-                    if(!me.bNode && (BCnt < 3 || CCnt < 3 || ECnt < 3 || FCnt < 3)) console.log("Some of the Ig strands B, C, E, F are missing in the domain " + domainid + "...");
+                    // if(!me.bNode && (BCnt < 3 || CCnt < 3 || ECnt < 3 || FCnt < 3)) console.log("Some of the Ig strands B, C, E, F are missing in the domain " + domainid + "...");
                     if(ic.domainid2refpdbname[domainid] == refpdbname) {
                         delete ic.domainid2refpdbname[domainid];
                         delete ic.domainid2score[domainid];