icn3d 3.25.4 → 3.25.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/icn3d.js +13 -3
- package/icn3d.min.js +2 -2
- package/icn3d.module.js +13 -3
- package/package.json +1 -1
package/icn3d.module.js
CHANGED
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@@ -42911,7 +42911,11 @@ class ShowSeq {
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42911
42911
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42912
42912
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// 2. remove strands with less than 3 residues
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42913
42913
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for(let il = strandArray.length, i = il - 1; i >= 0; --i) {
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42914
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-
if(strandArray[i].endRefnum - strandArray[i].startRefnum < 3
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42914
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+
if(strandArray[i].endRefnum - strandArray[i].startRefnum + 1 < 3) { // remove the strand
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42915
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+
if(i != il - 1) { // modify
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42916
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+
strandArray[i + 1].loopResCnt += strandArray[i].endRefnum - strandArray[i].startRefnum + 1;
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42917
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+
}
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42918
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+
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42915
42919
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strandArray.splice(i, 1);
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42916
42920
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}
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42917
42921
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}
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@@ -42999,6 +43003,10 @@ class ShowSeq {
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42999
43003
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if(strandArray[strandCnt].anchorRefnum) { // use anchor to name refnum
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43000
43004
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if(currResi == strandArray[strandCnt].startResi) {
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43001
43005
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refnumInStrand = strandArray[strandCnt].anchorRefnum - strandArray[strandCnt].resCntBfAnchor;
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43006
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+
strandArray[strandCnt].startRefnum = refnumInStrand;
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43007
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+
}
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43008
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else if(currResi == strandArray[strandCnt].endResi) {
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43009
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+
strandArray[strandCnt].endRefnum = refnumInStrand;
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43002
43010
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}
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43003
43011
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43004
43012
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refnumLabelNoPostfix = strandArray[strandCnt].strand + refnumInStrand;
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@@ -56301,11 +56309,13 @@ class LoadPDB {
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56301
56309
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}
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56302
56310
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}
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56303
56311
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56304
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-
setSsbond() { let ic = this.icn3d; ic.icn3dui;
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56312
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+
setSsbond(chainidHash) { let ic = this.icn3d; ic.icn3dui;
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56305
56313
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// get all Cys residues
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56306
56314
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let structure2cys_resid = {};
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56307
56315
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56308
56316
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for(let chainid in ic.chainsSeq) {
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56317
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+
if(chainidHash && !chainidHash.hasOwnProperty(chainid)) continue;
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56318
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+
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56309
56319
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let seq = ic.chainsSeq[chainid];
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56310
56320
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let structure = chainid.substr(0, chainid.indexOf('_'));
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56311
56321
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@@ -63211,7 +63221,7 @@ if(!me.bNode) {
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63211
63221
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prevStrand = (refnumLabel) ? refnumLabel.replace(new RegExp(refnum,'g'), '') : undefined;
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63212
63222
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63213
63223
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ic.resid2refnum[resid] = refnumLabel;
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63214
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-
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63224
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+
console.log(resid + " " + refnumLabel);
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63215
63225
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// final reference numbers will be assign in ic.showSeqCls.showRefNum()
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63216
63226
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63217
63227
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// if(!ic.refnum2residArray.hasOwnProperty(refnum)) {
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