icn3d 3.25.16 → 3.25.18
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/icn3d.js +32 -9
- package/icn3d.min.js +1 -1
- package/icn3d.module.js +32 -9
- package/package.json +1 -1
package/icn3d.js
CHANGED
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@@ -32255,7 +32255,8 @@ class Alternate {
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32255
32255
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ic.drawCls.draw();
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32256
32256
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32257
32257
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ic.bShowHighlight = true;
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32258
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-
ic.opts['rotationcenter'] = 'molecule center';
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32258
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+
//ic.opts['rotationcenter'] = 'molecule center';
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32259
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+
ic.opts['rotationcenter'] = 'highlight center';
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32259
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}
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32260
32261
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32261
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alternateWrapper() { let ic = this.icn3d; ic.icn3dui;
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@@ -42180,12 +42181,10 @@ class ShowSeq {
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42180
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prevStrand = currStrand;
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}
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42182
42183
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42183
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-
// 2. remove strands with less than 3 residues
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42184
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+
// 2. remove strands with less than 3 residues except G strand
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42184
42185
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for(let il = strandArray.length, i = il - 1; i >= 0; --i) {
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42185
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-
if(strandArray[i].endRefnum - strandArray[i].startRefnum + 1 < 3) { // remove the strand
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42186
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+
if(strandArray[i].strand.substr(0, 1) != 'G' && strandArray[i].endRefnum - strandArray[i].startRefnum + 1 < 3) { // remove the strand
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42186
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if(i != il - 1) { // modify
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42187
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-
// strandArray[i + 1].loopResCnt += strandArray[i].loopResCnt + strandArray[i].endRefnum - strandArray[i].startRefnum + 1;
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42188
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-
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strandArray[i + 1].loopResCnt += strandArray[i].loopResCnt + parseInt(strandArray[i].endResi) - parseInt(strandArray[i].startResi) + 1;
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42190
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}
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42191
42190
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@@ -42212,6 +42211,8 @@ class ShowSeq {
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refnumStr = ic.refnumCls.rmStrandFromRefnumlabel(refnumLabel);
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currRefnum = parseInt(refnumStr);
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refnumLabelNoPostfix = currStrand + currRefnum;
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42214
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+
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currStrand = refnumLabel.replace(new RegExp(refnumStr,'g'), '');
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42215
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let firstChar = refnumLabel.substr(0,1);
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if(!bStart && (firstChar == ' ' || firstChar == 'A' || firstChar == 'B')) { // start of a new IG domain
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@@ -42228,7 +42229,26 @@ class ShowSeq {
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refnumLabel = undefined;
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}
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else {
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42231
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-
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42232
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+
let bBefore = false, bInRange= false, bAfter = false;
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42233
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// 100, 100A
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42234
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if(parseInt(currResi) == parseInt(strandArray[strandCnt].startResi) && currResi != strandArray[strandCnt].startResi) {
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42235
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bBefore = currResi < strandArray[strandCnt].startResi;
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42236
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}
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42237
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else {
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42238
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bBefore = parseInt(currResi) < parseInt(strandArray[strandCnt].startResi);
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42239
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}
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42240
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+
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42241
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// 100, 100A
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42242
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if(parseInt(currResi) == parseInt(strandArray[strandCnt].endResi) && currResi != strandArray[strandCnt].endResi) {
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42243
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bAfter = currResi > strandArray[strandCnt].endResi;
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42244
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}
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42245
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else {
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42246
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bAfter = parseInt(currResi) > parseInt(strandArray[strandCnt].endResi);
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42247
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}
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42248
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+
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42249
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bInRange = (!bBefore && !bAfter) ? true : false;
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42250
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+
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42251
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if(bBefore) {
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42232
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ic.residIgLoop[residueid] = 1;
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42233
42253
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42234
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if(bBeforeAstrand) { // make it continuous to the 1st strand
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@@ -42289,7 +42309,7 @@ class ShowSeq {
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42289
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}
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42290
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}
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}
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42292
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-
else if(
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42312
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else if(bInRange) {
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42293
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// not in loop any more if you assign ref numbers multiple times
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//delete ic.residIgLoop[residueid];
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@@ -42317,7 +42337,7 @@ class ShowSeq {
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}
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}
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}
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42320
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-
else if(
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42340
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else if(bAfter) {
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ic.residIgLoop[residueid] = 1;
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42322
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if(!bAfterGstrand) {
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@@ -53923,7 +53943,10 @@ class SetSeqAlign {
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*/
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53924
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53925
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let resid = chainid + '_' + resi;
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53926
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-
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53946
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+
let resn = ic.residueId2Name[resid];
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53947
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if(!resn) resn = '?';
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53948
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53949
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return resn;
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53927
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}
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53928
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53929
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getResiAferAlign(chainid, bRealign, pos) { let ic = this.icn3d, me = ic.icn3dui;
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