icn3d 3.24.0 → 3.24.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/icn3d.js +397 -351
- package/icn3d.min.js +3 -3
- package/icn3d.module.js +397 -351
- package/package.json +1 -1
package/icn3d.module.js
CHANGED
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@@ -5269,10 +5269,10 @@ class ParasCls {
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];
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this.backgroundColors = {
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-
black: this.thr(0x000000),
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grey: this.thr(0xCCCCCC),
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white: this.thr(0xFFFFFF),
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transparent: this.thr(0xFFFFFF) //this.thr(0x000000)
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'black': this.thr(0x000000),
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'grey': this.thr(0xCCCCCC),
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'white': this.thr(0xFFFFFF),
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'transparent': this.thr(0xFFFFFF) //this.thr(0x000000)
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};
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this.residueColors = {
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@@ -6686,96 +6686,96 @@ class ClickMenu {
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let thisClass = this;
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//mn 1
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// clkMn1_mmtfid: function() {
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6689
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-
me.myEventCls.onIds("#" + me.pre + "mn1_vastplus", "click", function(e) { me.icn3d;
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6689
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+
me.myEventCls.onIds("#" + me.pre + "mn1_vastplus", "click", function(e) { me.icn3d; e.preventDefault();
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6690
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me.htmlCls.dialogCls.openDlg('dl_vastplus', 'Please input PDB ID for VAST+');
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});
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6692
6692
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6693
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me.myEventCls.onIds("#" + me.pre + "mn1_vast", "click", function(e) { me.icn3d;
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6693
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+
me.myEventCls.onIds("#" + me.pre + "mn1_vast", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_vast', 'Please input chain or PDB file for VAST');
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});
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6696
6696
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6697
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-
me.myEventCls.onIds("#" + me.pre + "mn1_foldseek", "click", function(e) { me.icn3d;
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+
me.myEventCls.onIds("#" + me.pre + "mn1_foldseek", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_foldseek', 'Submit your selection to Foldseek');
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});
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6701
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-
me.myEventCls.onIds("#" + me.pre + "mn1_mmtfid", "click", function(e) { me.icn3d;
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+
me.myEventCls.onIds("#" + me.pre + "mn1_mmtfid", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_mmtfid', 'Please input MMTF ID');
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});
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// clkMn1_pdbid: function() {
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me.myEventCls.onIds("#" + me.pre + "mn1_pdbid", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_pdbid", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_pdbid', 'Please input PDB ID');
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});
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6709
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me.myEventCls.onIds("#" + me.pre + "mn1_afid", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_afid", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_afid', 'Please input AlphaFold UniProt ID');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_refseqid", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_refseqid", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_refseqid', 'Please input NCBI Protein Accession');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_opmid", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_opmid", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_opmid', 'Please input OPM PDB ID');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_align", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_align", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_align', 'Align two PDB structures');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_alignaf", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_alignaf", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_alignaf', 'Align two AlphaFold structures');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_chainalign", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_chainalign", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_chainalign', 'Align multiple chains by structure alignment');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_chainalign2", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_chainalign2", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_chainalign2', 'Align multiple chains by sequence alignment');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_chainalign3", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_chainalign3", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_chainalign3', 'Align multiple chains residue by residue');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_mutation", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_mutation", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_mutation', 'Show the mutations in 3D');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_pdbfile", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_pdbfile", "click", function(e) { me.icn3d; e.preventDefault();
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//me = me.setIcn3dui($(this).attr('id'));
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me.htmlCls.dialogCls.openDlg('dl_pdbfile', 'Please input PDB File');
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});
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me.myEventCls.onIds(["#" + me.pre + "mn1_pdbfile_app", "#" + me.pre + "tool_pdbfile"], "click", function(e) { me.icn3d;
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me.myEventCls.onIds(["#" + me.pre + "mn1_pdbfile_app", "#" + me.pre + "tool_pdbfile"], "click", function(e) { me.icn3d; e.preventDefault();
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//me = me.setIcn3dui($(this).attr('id'));
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me.htmlCls.dialogCls.openDlg('dl_pdbfile_app', 'Please append PDB Files');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_mol2file", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_mol2file", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_mol2file', 'Please input Mol2 File');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_sdffile", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_sdffile", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_sdffile', 'Please input SDF File');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_xyzfile", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_xyzfile", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_xyzfile', 'Please input XYZ File');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_afmapfile", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_afmapfile", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_afmapfile', 'Please input AlphaFold PAE File');
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});
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6770
6770
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6771
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me.myEventCls.onIds("#" + me.pre + "mn1_urlfile", "click", function(e) { me.icn3d;
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me.myEventCls.onIds("#" + me.pre + "mn1_urlfile", "click", function(e) { me.icn3d; e.preventDefault();
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me.htmlCls.dialogCls.openDlg('dl_urlfile', 'Load data by URL');
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});
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me.myEventCls.onIds("#" + me.pre + "mn1_fixedversion", "click", function(e) { me.icn3d;
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+
me.myEventCls.onIds("#" + me.pre + "mn1_fixedversion", "click", function(e) { me.icn3d; e.preventDefault();
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6776
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me.htmlCls.dialogCls.openDlg('dl_fixedversion', 'Open Share Link URL in the archived version of iCn3D');
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6777
6777
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});
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6778
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me.myEventCls.onIds("#" + me.pre + "reload_fixedversion", "click", function(e) { let ic = me.icn3d;
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6778
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+
me.myEventCls.onIds("#" + me.pre + "reload_fixedversion", "click", function(e) { let ic = me.icn3d; e.preventDefault();
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let url = $("#" + me.pre + "sharelinkurl").val();
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thisClass.setLogCmd("open " + url, false);
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localStorage.setItem('fixedversion', '1');
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@@ -6783,65 +6783,65 @@ class ClickMenu {
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window.open(url, urlTarget);
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});
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6785
6785
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6786
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me.myEventCls.onIds("#" + me.pre + "mn1_mmciffile", "click", function(e) { me.icn3d;
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6786
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+
me.myEventCls.onIds("#" + me.pre + "mn1_mmciffile", "click", function(e) { me.icn3d; e.preventDefault();
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6787
6787
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me.htmlCls.dialogCls.openDlg('dl_mmciffile', 'Please input mmCIF File');
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6788
6788
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});
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6789
6789
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6790
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-
me.myEventCls.onIds("#" + me.pre + "mn1_mmcifid", "click", function(e) { me.icn3d;
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6790
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+
me.myEventCls.onIds("#" + me.pre + "mn1_mmcifid", "click", function(e) { me.icn3d; e.preventDefault();
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6791
6791
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me.htmlCls.dialogCls.openDlg('dl_mmcifid', 'Please input mmCIF ID');
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6792
6792
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});
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6793
6793
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6794
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me.myEventCls.onIds("#" + me.pre + "mn1_mmdbid", "click", function(e) { me.icn3d;
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6794
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+
me.myEventCls.onIds("#" + me.pre + "mn1_mmdbid", "click", function(e) { me.icn3d; e.preventDefault();
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6795
6795
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me.htmlCls.dialogCls.openDlg('dl_mmdbid', 'Please input MMDB or PDB ID');
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6796
6796
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});
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6797
6797
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6798
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-
me.myEventCls.onIds(["#" + me.pre + "mn1_mmdbafid", , "#" + me.pre + "tool_mmdbafid"], "click", function(e) { me.icn3d;
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6798
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+
me.myEventCls.onIds(["#" + me.pre + "mn1_mmdbafid", , "#" + me.pre + "tool_mmdbafid"], "click", function(e) { me.icn3d; e.preventDefault();
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6799
6799
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me.htmlCls.dialogCls.openDlg('dl_mmdbafid', 'Please input PDB/MMDB/AlphaFold UniProt IDs');
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6800
6800
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});
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6801
6801
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6802
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-
me.myEventCls.onIds("#" + me.pre + "mn1_blast_rep_id", "click", function(e) { me.icn3d;
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6802
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+
me.myEventCls.onIds("#" + me.pre + "mn1_blast_rep_id", "click", function(e) { me.icn3d; e.preventDefault();
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6803
6803
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me.htmlCls.dialogCls.openDlg('dl_blast_rep_id', 'Align sequence to structure');
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6804
6804
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});
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6805
6805
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6806
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-
me.myEventCls.onIds("#" + me.pre + "mn1_gi", "click", function(e) { me.icn3d;
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6806
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+
me.myEventCls.onIds("#" + me.pre + "mn1_gi", "click", function(e) { me.icn3d; e.preventDefault();
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6807
6807
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me.htmlCls.dialogCls.openDlg('dl_gi', 'Please input protein gi');
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6808
6808
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});
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6809
6809
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6810
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-
me.myEventCls.onIds("#" + me.pre + "mn1_cid", "click", function(e) { me.icn3d;
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6810
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+
me.myEventCls.onIds("#" + me.pre + "mn1_cid", "click", function(e) { me.icn3d; e.preventDefault();
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6811
6811
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me.htmlCls.dialogCls.openDlg('dl_cid', 'Please input PubChem CID');
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6812
6812
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});
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6813
6813
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6814
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me.myEventCls.onIds("#" + me.pre + "mn1_pngimage", "click", function(e) { me.icn3d;
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6814
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+
me.myEventCls.onIds("#" + me.pre + "mn1_pngimage", "click", function(e) { me.icn3d; e.preventDefault();
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6815
6815
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me.htmlCls.dialogCls.openDlg('dl_pngimage', 'Please input the PNG image');
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6816
6816
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});
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6817
6817
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6818
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-
me.myEventCls.onIds("#" + me.pre + "mn1_state", "click", function(e) { me.icn3d;
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6818
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+
me.myEventCls.onIds("#" + me.pre + "mn1_state", "click", function(e) { me.icn3d; e.preventDefault();
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6819
6819
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me.htmlCls.dialogCls.openDlg('dl_state', 'Please input the state file');
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6820
6820
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});
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6821
6821
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6822
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-
me.myEventCls.onIds("#" + me.pre + "mn1_selection", "click", function(e) { me.icn3d;
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6822
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+
me.myEventCls.onIds("#" + me.pre + "mn1_selection", "click", function(e) { me.icn3d; e.preventDefault();
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6823
6823
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me.htmlCls.dialogCls.openDlg('dl_selection', 'Please input the selection file');
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6824
6824
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});
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6825
6825
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6826
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-
me.myEventCls.onIds("#" + me.pre + "mn1_dsn6", "click", function(e) { me.icn3d;
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6826
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+
me.myEventCls.onIds("#" + me.pre + "mn1_dsn6", "click", function(e) { me.icn3d; e.preventDefault();
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6827
6827
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me.htmlCls.dialogCls.openDlg('dl_dsn6', 'Please input the DSN6 file to display electron density map');
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6828
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});
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6829
6829
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6830
6830
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6831
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me.myEventCls.onIds(["#" + me.pre + "mn1_delphi", "#" + me.pre + "mn1_delphi2", "#" + me.pre + "tool_delphi"], "click", function(e) { let ic = me.icn3d;
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6831
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+
me.myEventCls.onIds(["#" + me.pre + "mn1_delphi", "#" + me.pre + "mn1_delphi2", "#" + me.pre + "tool_delphi"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
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6832
6832
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ic.loadPhiFrom = 'delphi';
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6833
6833
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$("#" + me.pre + "dl_delphi_tabs").tabs();
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6834
6834
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me.htmlCls.dialogCls.openDlg('dl_delphi', 'Please set parameters to display DelPhi potential map');
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6835
6835
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});
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6836
6836
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6837
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_phi", "click", function(e) { let ic = me.icn3d;
|
|
6837
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_phi", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6838
6838
|
ic.loadPhiFrom = 'phi';
|
|
6839
6839
|
$("#" + me.pre + "dl_phi_tabs").tabs();
|
|
6840
6840
|
$("#" + me.pre + "phitab1_tabs").tabs();
|
|
6841
6841
|
$("#" + me.pre + "phitab2_tabs").tabs();
|
|
6842
6842
|
me.htmlCls.dialogCls.openDlg('dl_phi', 'Please input local phi or cube file to display DelPhi potential map');
|
|
6843
6843
|
});
|
|
6844
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_phiurl", "click", function(e) { let ic = me.icn3d;
|
|
6844
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_phiurl", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6845
6845
|
ic.loadPhiFrom = 'phiurl';
|
|
6846
6846
|
$("#" + me.pre + "dl_phiurl_tabs").tabs();
|
|
6847
6847
|
$("#" + me.pre + "phiurltab1_tabs").tabs();
|
|
@@ -6850,11 +6850,11 @@ class ClickMenu {
|
|
|
6850
6850
|
});
|
|
6851
6851
|
|
|
6852
6852
|
|
|
6853
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_dsn6url", "click", function(e) { me.icn3d;
|
|
6853
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_dsn6url", "click", function(e) { me.icn3d; e.preventDefault();
|
|
6854
6854
|
me.htmlCls.dialogCls.openDlg('dl_dsn6url', 'Please input the DSN6 file to display electron density map');
|
|
6855
6855
|
});
|
|
6856
6856
|
|
|
6857
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportState", "click", function(e) { let ic = me.icn3d;
|
|
6857
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportState", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6858
6858
|
thisClass.setLogCmd("export state file", false);
|
|
6859
6859
|
let file_pref =(ic.inputid) ? ic.inputid : "custom";
|
|
6860
6860
|
|
|
@@ -6862,19 +6862,19 @@ class ClickMenu {
|
|
|
6862
6862
|
});
|
|
6863
6863
|
|
|
6864
6864
|
|
|
6865
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportPdbRes", "click", function(e) { me.icn3d;
|
|
6865
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportPdbRes", "click", function(e) { me.icn3d; e.preventDefault();
|
|
6866
6866
|
me.htmlCls.setHtmlCls.exportPdb();
|
|
6867
6867
|
|
|
6868
6868
|
thisClass.setLogCmd("export pdb", true);
|
|
6869
6869
|
});
|
|
6870
6870
|
|
|
6871
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportSecondary", "click", function(e) { me.icn3d;
|
|
6871
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportSecondary", "click", function(e) { me.icn3d; e.preventDefault();
|
|
6872
6872
|
me.htmlCls.setHtmlCls.exportSecondary();
|
|
6873
6873
|
|
|
6874
6874
|
thisClass.setLogCmd("export secondary structure", true);
|
|
6875
6875
|
});
|
|
6876
6876
|
|
|
6877
|
-
me.myEventCls.onIds(["#" + me.pre + "delphipdb", "#" + me.pre + "phipdb"], "click", function(e) { let ic = me.icn3d;
|
|
6877
|
+
me.myEventCls.onIds(["#" + me.pre + "delphipdb", "#" + me.pre + "phipdb"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6878
6878
|
let pdbStr = ic.saveFileCls.getSelectedResiduePDB();
|
|
6879
6879
|
|
|
6880
6880
|
thisClass.setLogCmd("export PDB of selected residues", false);
|
|
@@ -6882,42 +6882,42 @@ class ClickMenu {
|
|
|
6882
6882
|
ic.saveFileCls.saveFile(file_pref + '_icn3d_residues.pdb', 'text', [pdbStr]);
|
|
6883
6883
|
});
|
|
6884
6884
|
|
|
6885
|
-
me.myEventCls.onIds(["#" + me.pre + "delphipqr", "#" + me.pre + "phipqr", "#" + me.pre + "phiurlpqr"], "click", async function(e) { me.icn3d;
|
|
6885
|
+
me.myEventCls.onIds(["#" + me.pre + "delphipqr", "#" + me.pre + "phipqr", "#" + me.pre + "phiurlpqr"], "click", async function(e) { me.icn3d; e.preventDefault();
|
|
6886
6886
|
await me.htmlCls.setHtmlCls.exportPqr();
|
|
6887
6887
|
thisClass.setLogCmd("export pqr", true);
|
|
6888
6888
|
});
|
|
6889
6889
|
|
|
6890
|
-
// me.myEventCls.onIds("#" + me.pre + "delphipqbh", "click", async function(e) { let ic = me.icn3d;
|
|
6890
|
+
// me.myEventCls.onIds("#" + me.pre + "delphipqbh", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6891
6891
|
// let bPdb = true;
|
|
6892
6892
|
// await me.htmlCls.setHtmlCls.exportPqr(bPdb);
|
|
6893
6893
|
// thisClass.setLogCmd("export pdbh", false);
|
|
6894
6894
|
// });
|
|
6895
6895
|
|
|
6896
|
-
me.myEventCls.onIds("#" + me.pre + "profixpdb", "click", async function(e) { let ic = me.icn3d;
|
|
6896
|
+
me.myEventCls.onIds("#" + me.pre + "profixpdb", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6897
6897
|
let bHydrogen = false;
|
|
6898
6898
|
await ic.scapCls.exportPdbProfix(bHydrogen);
|
|
6899
6899
|
thisClass.setLogCmd("export pdb missing atoms", true);
|
|
6900
6900
|
});
|
|
6901
6901
|
|
|
6902
|
-
me.myEventCls.onIds("#" + me.pre + "profixpdbh", "click", async function(e) { let ic = me.icn3d;
|
|
6902
|
+
me.myEventCls.onIds("#" + me.pre + "profixpdbh", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6903
6903
|
let bHydrogen = true;
|
|
6904
6904
|
await ic.scapCls.exportPdbProfix(bHydrogen);
|
|
6905
6905
|
thisClass.setLogCmd("export pdb hydrogen", true);
|
|
6906
6906
|
});
|
|
6907
6907
|
|
|
6908
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportStl", "click", function(e) { let ic = me.icn3d;
|
|
6908
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportStl", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6909
6909
|
thisClass.setLogCmd("export stl file", false);
|
|
6910
6910
|
//ic.threeDPrintCls.hideStabilizer();
|
|
6911
6911
|
ic.export3DCls.exportStlFile('');
|
|
6912
6912
|
});
|
|
6913
6913
|
|
|
6914
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportVrml", "click", function(e) { let ic = me.icn3d;
|
|
6914
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportVrml", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6915
6915
|
thisClass.setLogCmd("export vrml file", false);
|
|
6916
6916
|
//ic.threeDPrintCls.hideStabilizer();
|
|
6917
6917
|
ic.export3DCls.exportVrmlFile('');
|
|
6918
6918
|
});
|
|
6919
6919
|
|
|
6920
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportStlStab", "click", function(e) { let ic = me.icn3d;
|
|
6920
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportStlStab", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6921
6921
|
thisClass.setLogCmd("export stl stabilizer file", false);
|
|
6922
6922
|
//ic.bRender = false;
|
|
6923
6923
|
ic.threeDPrintCls.hideStabilizer();
|
|
@@ -6926,7 +6926,7 @@ class ClickMenu {
|
|
|
6926
6926
|
ic.export3DCls.exportStlFile('_stab');
|
|
6927
6927
|
});
|
|
6928
6928
|
|
|
6929
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportVrmlStab", "click", function(e) { let ic = me.icn3d;
|
|
6929
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportVrmlStab", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6930
6930
|
thisClass.setLogCmd("export vrml stabilizer file", false);
|
|
6931
6931
|
//ic.bRender = false;
|
|
6932
6932
|
ic.threeDPrintCls.hideStabilizer();
|
|
@@ -6935,13 +6935,13 @@ class ClickMenu {
|
|
|
6935
6935
|
ic.export3DCls.exportVrmlFile('_stab');
|
|
6936
6936
|
});
|
|
6937
6937
|
|
|
6938
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_exportInteraction", "click", async function(e) { let ic = me.icn3d;
|
|
6938
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_exportInteraction", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6939
6939
|
thisClass.setLogCmd("export interactions", false);
|
|
6940
6940
|
if(me.cfg.mmdbid !== undefined) await ic.viewInterPairsCls.retrieveInteractionData();
|
|
6941
6941
|
ic.viewInterPairsCls.exportInteractions();
|
|
6942
6942
|
});
|
|
6943
6943
|
|
|
6944
|
-
me.myEventCls.onIds(["#" + me.pre + "mn1_exportCanvas", "#" + me.pre + "saveimage"], "click", async function(e) { let ic = me.icn3d;
|
|
6944
|
+
me.myEventCls.onIds(["#" + me.pre + "mn1_exportCanvas", "#" + me.pre + "saveimage"], "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6945
6945
|
// do not record the export command
|
|
6946
6946
|
//thisClass.setLogCmd("export canvas", true);
|
|
6947
6947
|
thisClass.setLogCmd("export canvas", false);
|
|
@@ -6950,28 +6950,28 @@ class ClickMenu {
|
|
|
6950
6950
|
let bPngHtml = true;
|
|
6951
6951
|
await ic.shareLinkCls.shareLink(bPngHtml);
|
|
6952
6952
|
});
|
|
6953
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas1", "click", async function(e) { let ic = me.icn3d;
|
|
6953
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas1", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6954
6954
|
thisClass.setLogCmd("export canvas 1", true);
|
|
6955
6955
|
ic.scaleFactor = 1;
|
|
6956
6956
|
await ic.shareLinkCls.shareLink(true, true);
|
|
6957
6957
|
});
|
|
6958
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas2", "click", async function(e) { let ic = me.icn3d;
|
|
6958
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas2", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6959
6959
|
thisClass.setLogCmd("export canvas 2", true);
|
|
6960
6960
|
ic.scaleFactor = 2;
|
|
6961
6961
|
await ic.shareLinkCls.shareLink(true, true);
|
|
6962
6962
|
});
|
|
6963
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas4", "click", async function(e) { let ic = me.icn3d;
|
|
6963
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas4", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6964
6964
|
thisClass.setLogCmd("export canvas 4", true);
|
|
6965
6965
|
ic.scaleFactor = 4;
|
|
6966
6966
|
await ic.shareLinkCls.shareLink(true, true);
|
|
6967
6967
|
});
|
|
6968
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas8", "click", async function(e) { let ic = me.icn3d;
|
|
6968
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportCanvas8", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6969
6969
|
thisClass.setLogCmd("export canvas 8", true);
|
|
6970
6970
|
ic.scaleFactor = 8;
|
|
6971
6971
|
await ic.shareLinkCls.shareLink(true, true);
|
|
6972
6972
|
});
|
|
6973
6973
|
|
|
6974
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportCounts", "click", function(e) { let ic = me.icn3d;
|
|
6974
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportCounts", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
6975
6975
|
thisClass.setLogCmd("export counts", false);
|
|
6976
6976
|
let text = '<html><body><div style="text-align:center"><br><b>Total Count for atoms with coordinates</b>:<br/><table align=center border=1 cellpadding=10 cellspacing=0><tr><th>Structure Count</th><th>Chain Count</th><th>Residue Count</th><th>Atom Count</th></tr>';
|
|
6977
6977
|
text += '<tr><td>' + Object.keys(ic.structures).length + '</td><td>' + Object.keys(ic.chains).length + '</td><td>' + Object.keys(ic.residues).length + '</td><td>' + Object.keys(ic.atoms).length + '</td></tr>';
|
|
@@ -6998,7 +6998,7 @@ class ClickMenu {
|
|
|
6998
6998
|
ic.saveFileCls.saveFile(file_pref + '_counts.html', 'html', text);
|
|
6999
6999
|
});
|
|
7000
7000
|
|
|
7001
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportSelections", "click", function(e) { let ic = me.icn3d;
|
|
7001
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportSelections", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7002
7002
|
thisClass.setLogCmd("export all selections", false);
|
|
7003
7003
|
|
|
7004
7004
|
thisClass.SetChainsAdvancedMenu();
|
|
@@ -7008,7 +7008,7 @@ class ClickMenu {
|
|
|
7008
7008
|
ic.saveFileCls.saveFile(file_pref + '_selections.txt', 'text', [text]);
|
|
7009
7009
|
});
|
|
7010
7010
|
|
|
7011
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_exportSelDetails", "click", function(e) { let ic = me.icn3d;
|
|
7011
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_exportSelDetails", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7012
7012
|
thisClass.setLogCmd("export all selections with details", false);
|
|
7013
7013
|
|
|
7014
7014
|
thisClass.SetChainsAdvancedMenu();
|
|
@@ -7019,32 +7019,32 @@ class ClickMenu {
|
|
|
7019
7019
|
ic.saveFileCls.saveFile(file_pref + '_sel_details.txt', 'text', [text]);
|
|
7020
7020
|
});
|
|
7021
7021
|
|
|
7022
|
-
me.myEventCls.onIds(["#" + me.pre + "mn1_sharelink", "#" + me.pre + "tool_sharelink"], "click", async function(e) { let ic = me.icn3d;
|
|
7022
|
+
me.myEventCls.onIds(["#" + me.pre + "mn1_sharelink", "#" + me.pre + "tool_sharelink"], "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7023
7023
|
await ic.shareLinkCls.shareLink();
|
|
7024
7024
|
});
|
|
7025
7025
|
|
|
7026
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_replayon", "click", async function(e) { let ic = me.icn3d;
|
|
7026
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_replayon", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7027
7027
|
await ic.resizeCanvasCls.replayon();
|
|
7028
7028
|
thisClass.setLogCmd("replay on", true);
|
|
7029
7029
|
});
|
|
7030
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_replayoff", "click", async function(e) { let ic = me.icn3d;
|
|
7030
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_replayoff", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7031
7031
|
await ic.resizeCanvasCls.replayoff();
|
|
7032
7032
|
thisClass.setLogCmd("replay off", true);
|
|
7033
7033
|
});
|
|
7034
7034
|
|
|
7035
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_menuall", "click", function(e) { me.icn3d;
|
|
7035
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_menuall", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7036
7036
|
me.htmlCls.shownMenus = me.hashUtilsCls.cloneHash(me.htmlCls.allMenus);
|
|
7037
7037
|
|
|
7038
7038
|
thisClass.applyShownMenus();
|
|
7039
7039
|
});
|
|
7040
7040
|
|
|
7041
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_menusimple", "click", function(e) { me.icn3d;
|
|
7041
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_menusimple", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7042
7042
|
me.htmlCls.shownMenus = me.hashUtilsCls.cloneHash(me.htmlCls.simpleMenus);
|
|
7043
7043
|
|
|
7044
7044
|
thisClass.applyShownMenus();
|
|
7045
7045
|
});
|
|
7046
7046
|
|
|
7047
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_menupref", "click", function(e) { me.icn3d;
|
|
7047
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_menupref", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7048
7048
|
me.htmlCls.dialogCls.openDlg('dl_menupref', 'Select Menus');
|
|
7049
7049
|
|
|
7050
7050
|
thisClass.getHiddenMenusFromCache();
|
|
@@ -7052,7 +7052,7 @@ class ClickMenu {
|
|
|
7052
7052
|
thisClass.displayShownMenus();
|
|
7053
7053
|
});
|
|
7054
7054
|
|
|
7055
|
-
me.myEventCls.onIds(["#" + me.pre + "apply_menupref", "#" + me.pre + "apply_menupref2"], "click", function(e) { me.icn3d;
|
|
7055
|
+
me.myEventCls.onIds(["#" + me.pre + "apply_menupref", "#" + me.pre + "apply_menupref2"], "click", function(e) { me.icn3d; e.preventDefault();
|
|
7056
7056
|
var checkboxes = document.querySelectorAll('form[name="' + me.pre + 'selmenu"] input:checked');
|
|
7057
7057
|
me.htmlCls.shownMenus = {};
|
|
7058
7058
|
for (var checkbox of checkboxes) {
|
|
@@ -7062,21 +7062,21 @@ class ClickMenu {
|
|
|
7062
7062
|
thisClass.applyShownMenus();
|
|
7063
7063
|
});
|
|
7064
7064
|
|
|
7065
|
-
me.myEventCls.onIds(["#" + me.pre + "reset_menupref", "#" + me.pre + "reset_menupref2"], "click", function(e) { me.icn3d;
|
|
7065
|
+
me.myEventCls.onIds(["#" + me.pre + "reset_menupref", "#" + me.pre + "reset_menupref2"], "click", function(e) { me.icn3d; e.preventDefault();
|
|
7066
7066
|
me.htmlCls.shownMenus = me.hashUtilsCls.cloneHash(me.htmlCls.simpleMenus);
|
|
7067
7067
|
|
|
7068
7068
|
thisClass.applyShownMenus();
|
|
7069
7069
|
thisClass.displayShownMenus();
|
|
7070
7070
|
});
|
|
7071
7071
|
|
|
7072
|
-
me.myEventCls.onIds(["#" + me.pre + "reset_menupref_all", "#" + me.pre + "reset_menupref_all2"], "click", function(e) { me.icn3d;
|
|
7072
|
+
me.myEventCls.onIds(["#" + me.pre + "reset_menupref_all", "#" + me.pre + "reset_menupref_all2"], "click", function(e) { me.icn3d; e.preventDefault();
|
|
7073
7073
|
me.htmlCls.shownMenus = me.hashUtilsCls.cloneHash(me.htmlCls.allMenus);
|
|
7074
7074
|
|
|
7075
7075
|
thisClass.applyShownMenus();
|
|
7076
7076
|
thisClass.displayShownMenus();
|
|
7077
7077
|
});
|
|
7078
7078
|
|
|
7079
|
-
me.myEventCls.onIds(["#" + me.pre + "savepref", "#" + me.pre + "savepref2"], "click", function(e) { let ic = me.icn3d;
|
|
7079
|
+
me.myEventCls.onIds(["#" + me.pre + "savepref", "#" + me.pre + "savepref2"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7080
7080
|
let menuStr = '[';
|
|
7081
7081
|
|
|
7082
7082
|
//var checkboxes = document.querySelectorAll('form[name="' + me.pre + 'selmenu"] input:checked');
|
|
@@ -7093,7 +7093,7 @@ class ClickMenu {
|
|
|
7093
7093
|
ic.saveFileCls.saveFile('icn3d_menus_pref.txt', 'text', [menuStr]);
|
|
7094
7094
|
});
|
|
7095
7095
|
|
|
7096
|
-
me.myEventCls.onIds("#" + me.pre + "reload_menupreffile", "click", function(e) { me.icn3d;
|
|
7096
|
+
me.myEventCls.onIds("#" + me.pre + "reload_menupreffile", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7097
7097
|
|
|
7098
7098
|
if(!me.cfg.notebook) dialog.dialog( "close" );
|
|
7099
7099
|
let file = $("#" + me.pre + "menupreffile")[0].files[0];
|
|
@@ -7124,25 +7124,25 @@ class ClickMenu {
|
|
|
7124
7124
|
}
|
|
7125
7125
|
});
|
|
7126
7126
|
|
|
7127
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_menuloadpref", "click", function(e) { me.icn3d;
|
|
7127
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_menuloadpref", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7128
7128
|
me.htmlCls.dialogCls.openDlg('dl_menuloadpref', 'Please input the menu preference file');
|
|
7129
7129
|
});
|
|
7130
7130
|
|
|
7131
7131
|
|
|
7132
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_link_structure", "click", function(e) { let ic = me.icn3d;
|
|
7132
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_link_structure", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7133
7133
|
let url = ic.saveFileCls.getLinkToStructureSummary(true);
|
|
7134
7134
|
let urlTarget = (ic.structures && Object.keys(ic.structures).length > 0) ? '_blank' : '_self';
|
|
7135
7135
|
window.open(url, urlTarget);
|
|
7136
7136
|
});
|
|
7137
7137
|
|
|
7138
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_link_bind", "click", function(e) { let ic = me.icn3d;
|
|
7138
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_link_bind", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7139
7139
|
url = "https://www.ncbi.nlm.nih.gov/pccompound?LinkName=pccompound_structure&from_uid=" + ic.inputid;
|
|
7140
7140
|
thisClass.setLogCmd("link to 3D protein structures bound to CID " + ic.inputid + ": " + url, false);
|
|
7141
7141
|
let urlTarget = (ic.structures && Object.keys(ic.structures).length > 0) ? '_blank' : '_self';
|
|
7142
7142
|
window.open(url, urlTarget);
|
|
7143
7143
|
});
|
|
7144
7144
|
|
|
7145
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_link_vast", "click", function(e) { let ic = me.icn3d;
|
|
7145
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_link_vast", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7146
7146
|
if(ic.inputid === undefined) {
|
|
7147
7147
|
url = "https://www.ncbi.nlm.nih.gov/pccompound?term=" + ic.molTitle;
|
|
7148
7148
|
thisClass.setLogCmd("link to compounds " + ic.molTitle + ": " + url, false);
|
|
@@ -7171,7 +7171,7 @@ class ClickMenu {
|
|
|
7171
7171
|
window.open(url, urlTarget);
|
|
7172
7172
|
});
|
|
7173
7173
|
|
|
7174
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_link_pubmed", "click", function(e) { let ic = me.icn3d;
|
|
7174
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_link_pubmed", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7175
7175
|
if(ic.inputid === undefined) {
|
|
7176
7176
|
let url;
|
|
7177
7177
|
url = "https://www.ncbi.nlm.nih.gov/pubmed/?term=" + ic.molTitle;
|
|
@@ -7217,7 +7217,7 @@ class ClickMenu {
|
|
|
7217
7217
|
}
|
|
7218
7218
|
});
|
|
7219
7219
|
|
|
7220
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_link_protein", "click", function(e) { let ic = me.icn3d;
|
|
7220
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_link_protein", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7221
7221
|
//ic.saveFileCls.setEntrezLinks('protein');
|
|
7222
7222
|
let structArray = Object.keys(ic.structures);
|
|
7223
7223
|
let chainArray = Object.keys(ic.chains);
|
|
@@ -7242,19 +7242,19 @@ class ClickMenu {
|
|
|
7242
7242
|
|
|
7243
7243
|
let thisClass = this;
|
|
7244
7244
|
|
|
7245
|
-
me.myEventCls.onIds(["#" + me.pre + "mn6_selectannotations", "#" + me.pre + "tool_selectannotations"], "click", async function(e) { let ic = me.icn3d;
|
|
7245
|
+
me.myEventCls.onIds(["#" + me.pre + "mn6_selectannotations", "#" + me.pre + "tool_selectannotations"], "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7246
7246
|
await ic.showAnnoCls.showAnnotations();
|
|
7247
7247
|
thisClass.setLogCmd("view annotations", true);
|
|
7248
7248
|
//thisClass.setLogCmd("window annotations", true);
|
|
7249
7249
|
});
|
|
7250
7250
|
|
|
7251
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_selectall", "click", function(e) { let ic = me.icn3d;
|
|
7251
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_selectall", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7252
7252
|
thisClass.setLogCmd("select all", true);
|
|
7253
7253
|
ic.selectionCls.selectAll();
|
|
7254
7254
|
ic.hlUpdateCls.removeHlAll();
|
|
7255
7255
|
ic.drawCls.draw();
|
|
7256
7256
|
});
|
|
7257
|
-
me.myEventCls.onIds("#" + me.pre + "clearall", "click", function(e) { let ic = me.icn3d;
|
|
7257
|
+
me.myEventCls.onIds("#" + me.pre + "clearall", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7258
7258
|
thisClass.setLogCmd("clear all", true);
|
|
7259
7259
|
ic.bSelectResidue = false;
|
|
7260
7260
|
ic.selectionCls.selectAll();
|
|
@@ -7262,7 +7262,7 @@ class ClickMenu {
|
|
|
7262
7262
|
ic.drawCls.draw();
|
|
7263
7263
|
});
|
|
7264
7264
|
|
|
7265
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_selectdisplayed", "click", function(e) { let ic = me.icn3d;
|
|
7265
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_selectdisplayed", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7266
7266
|
thisClass.setLogCmd("select displayed set", true);
|
|
7267
7267
|
//ic.hAtoms = me.hashUtilsCls.cloneHash(ic.dAtoms);
|
|
7268
7268
|
ic.hAtoms = me.hashUtilsCls.cloneHash(ic.viewSelectionAtoms);
|
|
@@ -7270,106 +7270,106 @@ class ClickMenu {
|
|
|
7270
7270
|
//ic.drawCls.draw();
|
|
7271
7271
|
});
|
|
7272
7272
|
|
|
7273
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_fullstru", "click", function(e) { let ic = me.icn3d;
|
|
7273
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_fullstru", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7274
7274
|
thisClass.setLogCmd("show all", true);
|
|
7275
7275
|
ic.selectionCls.showAll();
|
|
7276
7276
|
});
|
|
7277
7277
|
|
|
7278
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_selectcomplement", "click", function(e) { let ic = me.icn3d;
|
|
7278
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_selectcomplement", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7279
7279
|
if(Object.keys(ic.hAtoms).length < Object.keys(ic.atoms).length) {
|
|
7280
7280
|
thisClass.setLogCmd("select complement", true);
|
|
7281
7281
|
ic.resid2specCls.selectComplement();
|
|
7282
7282
|
}
|
|
7283
7283
|
});
|
|
7284
7284
|
|
|
7285
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_selectmainchains", "click", function(e) { let ic = me.icn3d;
|
|
7285
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_selectmainchains", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7286
7286
|
thisClass.setLogCmd("select main chains", true);
|
|
7287
7287
|
ic.selectionCls.selectMainChains();
|
|
7288
7288
|
});
|
|
7289
7289
|
|
|
7290
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_selectsidechains", "click", function(e) { let ic = me.icn3d;
|
|
7290
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_selectsidechains", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7291
7291
|
thisClass.setLogCmd("select side chains", true);
|
|
7292
7292
|
ic.selectionCls.selectSideChains();
|
|
7293
7293
|
});
|
|
7294
7294
|
|
|
7295
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_selectmainsidechains", "click", function(e) { let ic = me.icn3d;
|
|
7295
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_selectmainsidechains", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7296
7296
|
thisClass.setLogCmd("select main side chains", true);
|
|
7297
7297
|
ic.selectionCls.selectMainSideChains();
|
|
7298
7298
|
});
|
|
7299
7299
|
|
|
7300
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_propPos", "click", function(e) { let ic = me.icn3d;
|
|
7300
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_propPos", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7301
7301
|
thisClass.setLogCmd("select prop positive", true);
|
|
7302
7302
|
ic.resid2specCls.selectProperty('positive');
|
|
7303
7303
|
});
|
|
7304
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_propNeg", "click", function(e) { let ic = me.icn3d;
|
|
7304
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_propNeg", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7305
7305
|
thisClass.setLogCmd("select prop negative", true);
|
|
7306
7306
|
ic.resid2specCls.selectProperty('negative');
|
|
7307
7307
|
});
|
|
7308
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_propHydro", "click", function(e) { let ic = me.icn3d;
|
|
7308
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_propHydro", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7309
7309
|
thisClass.setLogCmd("select prop hydrophobic", true);
|
|
7310
7310
|
ic.resid2specCls.selectProperty('hydrophobic');
|
|
7311
7311
|
});
|
|
7312
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_propPolar", "click", function(e) { let ic = me.icn3d;
|
|
7312
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_propPolar", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7313
7313
|
thisClass.setLogCmd("select prop polar", true);
|
|
7314
7314
|
ic.resid2specCls.selectProperty('polar');
|
|
7315
7315
|
});
|
|
7316
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_propBfactor", "click", function(e) { me.icn3d;
|
|
7316
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_propBfactor", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7317
7317
|
me.htmlCls.dialogCls.openDlg('dl_propbybfactor', 'Select residue based on B-factor');
|
|
7318
7318
|
});
|
|
7319
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_propSolAcc", "click", function(e) { me.icn3d;
|
|
7319
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_propSolAcc", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7320
7320
|
me.htmlCls.dialogCls.openDlg('dl_propbypercentout', 'Select residue based on the percentage of solvent accessilbe surface area');
|
|
7321
7321
|
});
|
|
7322
|
-
me.myEventCls.onIds("#" + me.pre + "applypropbybfactor", "click", function(e) { let ic = me.icn3d;
|
|
7322
|
+
me.myEventCls.onIds("#" + me.pre + "applypropbybfactor", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7323
7323
|
let from = $("#" + me.pre + "minbfactor").val();
|
|
7324
7324
|
let to = $("#" + me.pre + "maxbfactor").val();
|
|
7325
7325
|
thisClass.setLogCmd("select prop b factor | " + from + '_' + to, true);
|
|
7326
7326
|
ic.resid2specCls.selectProperty('b factor', from, to);
|
|
7327
7327
|
});
|
|
7328
|
-
me.myEventCls.onIds("#" + me.pre + "applypropbypercentout", "click", function(e) { let ic = me.icn3d;
|
|
7328
|
+
me.myEventCls.onIds("#" + me.pre + "applypropbypercentout", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7329
7329
|
let from = $("#" + me.pre + "minpercentout").val();
|
|
7330
7330
|
let to = $("#" + me.pre + "maxpercentout").val();
|
|
7331
7331
|
thisClass.setLogCmd("select prop percent out | " + from + '_' + to, true);
|
|
7332
7332
|
ic.resid2specCls.selectProperty('percent out', from, to);
|
|
7333
7333
|
});
|
|
7334
7334
|
|
|
7335
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_alignment", "click", function(e) { me.icn3d;
|
|
7335
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_alignment", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7336
7336
|
me.htmlCls.dialogCls.openDlg('dl_alignment', 'Select residues in aligned sequences');
|
|
7337
7337
|
thisClass.setLogCmd("window aligned sequences", true);
|
|
7338
7338
|
});
|
|
7339
7339
|
|
|
7340
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_window_table", "click", function(e) { me.icn3d;
|
|
7340
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_window_table", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7341
7341
|
me.htmlCls.dialogCls.openDlg('dl_allinteraction', 'Show interactions');
|
|
7342
7342
|
thisClass.setLogCmd("window interaction table", true);
|
|
7343
7343
|
});
|
|
7344
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_window_linegraph", "click", function(e) { me.icn3d;
|
|
7344
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_window_linegraph", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7345
7345
|
me.htmlCls.dialogCls.openDlg('dl_linegraph', 'Show interactions between two lines of residue nodes');
|
|
7346
7346
|
thisClass.setLogCmd("window interaction graph", true);
|
|
7347
7347
|
});
|
|
7348
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_window_scatterplot", "click", function(e) { me.icn3d;
|
|
7348
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_window_scatterplot", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7349
7349
|
me.htmlCls.dialogCls.openDlg('dl_scatterplot', 'Show interactions as map');
|
|
7350
7350
|
thisClass.setLogCmd("window interaction scatterplot", true);
|
|
7351
7351
|
});
|
|
7352
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_window_graph", "click", function(e) { me.icn3d;
|
|
7352
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_window_graph", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7353
7353
|
me.htmlCls.dialogCls.openDlg('dl_graph', 'Force-directed graph');
|
|
7354
7354
|
thisClass.setLogCmd("window force-directed graph", true);
|
|
7355
7355
|
});
|
|
7356
7356
|
|
|
7357
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_yournote", "click", function(e) { me.icn3d;
|
|
7357
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_yournote", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7358
7358
|
me.htmlCls.dialogCls.openDlg('dl_yournote', 'Your note about the current display');
|
|
7359
7359
|
});
|
|
7360
7360
|
|
|
7361
|
-
me.myEventCls.onIds("#" + me.pre + "applyyournote", "click", function(e) { let ic = me.icn3d;
|
|
7361
|
+
me.myEventCls.onIds("#" + me.pre + "applyyournote", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7362
7362
|
ic.yournote = $("#" + me.pre + "yournote").val();
|
|
7363
7363
|
if(me.cfg.shownote) document.title = ic.yournote;
|
|
7364
7364
|
if(!me.cfg.notebook) dialog.dialog( "close" );
|
|
7365
7365
|
thisClass.setLogCmd('your note | ' + ic.yournote, true);
|
|
7366
7366
|
});
|
|
7367
7367
|
|
|
7368
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_command", "click", function(e) { me.icn3d;
|
|
7368
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_command", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7369
7369
|
me.htmlCls.dialogCls.openDlg('dl_advanced2', 'Select by specification');
|
|
7370
7370
|
});
|
|
7371
7371
|
|
|
7372
|
-
me.myEventCls.onIds(["#" + me.pre + "mn2_definedsets", "#" + me.pre + "definedsets", "#" + me.pre + "definedsets2", "#" + me.pre + "tool_definedsets"], "click", function(e) { let ic = me.icn3d;
|
|
7372
|
+
me.myEventCls.onIds(["#" + me.pre + "mn2_definedsets", "#" + me.pre + "definedsets", "#" + me.pre + "definedsets2", "#" + me.pre + "tool_definedsets"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7373
7373
|
ic.definedSetsCls.showSets();
|
|
7374
7374
|
thisClass.setLogCmd('defined sets', true);
|
|
7375
7375
|
//thisClass.setLogCmd('window defined sets', true);
|
|
@@ -7388,7 +7388,7 @@ class ClickMenu {
|
|
|
7388
7388
|
});
|
|
7389
7389
|
|
|
7390
7390
|
|
|
7391
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_pkNo", "click", function(e) { let ic = me.icn3d;
|
|
7391
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_pkNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7392
7392
|
ic.pk = 0;
|
|
7393
7393
|
ic.opts['pk'] = 'no';
|
|
7394
7394
|
thisClass.setLogCmd('set pk off', true);
|
|
@@ -7396,50 +7396,50 @@ class ClickMenu {
|
|
|
7396
7396
|
ic.hlObjectsCls.removeHlObjects();
|
|
7397
7397
|
});
|
|
7398
7398
|
|
|
7399
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_pkYes", "click", function(e) { let ic = me.icn3d;
|
|
7399
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_pkYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7400
7400
|
ic.pk = 1;
|
|
7401
7401
|
ic.opts['pk'] = 'atom';
|
|
7402
7402
|
thisClass.setLogCmd('set pk atom', true);
|
|
7403
7403
|
});
|
|
7404
7404
|
|
|
7405
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_pkResidue", "click", function(e) { let ic = me.icn3d;
|
|
7405
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_pkResidue", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7406
7406
|
ic.pk = 2;
|
|
7407
7407
|
ic.opts['pk'] = 'residue';
|
|
7408
7408
|
thisClass.setLogCmd('set pk residue', true);
|
|
7409
7409
|
});
|
|
7410
7410
|
|
|
7411
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_pkStrand", "click", function(e) { let ic = me.icn3d;
|
|
7411
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_pkStrand", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7412
7412
|
ic.pk = 3;
|
|
7413
7413
|
ic.opts['pk'] = 'strand';
|
|
7414
7414
|
thisClass.setLogCmd('set pk strand', true);
|
|
7415
7415
|
});
|
|
7416
7416
|
|
|
7417
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_pkDomain", "click", function(e) { let ic = me.icn3d;
|
|
7417
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_pkDomain", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7418
7418
|
ic.pk = 4;
|
|
7419
7419
|
ic.opts['pk'] = 'domain';
|
|
7420
7420
|
thisClass.setLogCmd('set pk domain', true);
|
|
7421
7421
|
});
|
|
7422
7422
|
|
|
7423
|
-
me.myEventCls.onIds("#" + me.pre + "mn2_pkChain", "click", function(e) { let ic = me.icn3d;
|
|
7423
|
+
me.myEventCls.onIds("#" + me.pre + "mn2_pkChain", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7424
7424
|
ic.pk = 5;
|
|
7425
7425
|
ic.opts['pk'] = 'chain';
|
|
7426
7426
|
thisClass.setLogCmd('set pk chain', true);
|
|
7427
7427
|
});
|
|
7428
7428
|
|
|
7429
|
-
me.myEventCls.onIds("#" + me.pre + "adjustmem", "click", function(e) { me.icn3d;
|
|
7429
|
+
me.myEventCls.onIds("#" + me.pre + "adjustmem", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7430
7430
|
me.htmlCls.dialogCls.openDlg('dl_adjustmem', 'Adjust the Z-axis positions of the membrane');
|
|
7431
7431
|
});
|
|
7432
7432
|
|
|
7433
|
-
me.myEventCls.onIds("#" + me.pre + "togglemem", "click", function(e) { let ic = me.icn3d;
|
|
7433
|
+
me.myEventCls.onIds("#" + me.pre + "togglemem", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7434
7434
|
ic.selectionCls.toggleMembrane();
|
|
7435
7435
|
thisClass.setLogCmd('toggle membrane', true);
|
|
7436
7436
|
});
|
|
7437
7437
|
|
|
7438
|
-
me.myEventCls.onIds("#" + me.pre + "selectplane", "click", function(e) { me.icn3d;
|
|
7438
|
+
me.myEventCls.onIds("#" + me.pre + "selectplane", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7439
7439
|
me.htmlCls.dialogCls.openDlg('dl_selectplane', 'Select a region between two planes');
|
|
7440
7440
|
});
|
|
7441
7441
|
|
|
7442
|
-
me.myEventCls.onIds(["#" + me.pre + "mn2_aroundsphere", "#" + me.pre + "tool_aroundsphere"], "click", function(e) { let ic = me.icn3d;
|
|
7442
|
+
me.myEventCls.onIds(["#" + me.pre + "mn2_aroundsphere", "#" + me.pre + "tool_aroundsphere"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7443
7443
|
thisClass.SetChainsAdvancedMenu();
|
|
7444
7444
|
|
|
7445
7445
|
let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
|
|
@@ -7456,7 +7456,7 @@ class ClickMenu {
|
|
|
7456
7456
|
$("#" + me.pre + "atomsCustomSphere2").resizable();
|
|
7457
7457
|
});
|
|
7458
7458
|
|
|
7459
|
-
me.myEventCls.onIds(["#" + me.pre + "mn2_select_chain", "#" + me.pre + "definedSets"], "click", function(e) { me.icn3d;
|
|
7459
|
+
me.myEventCls.onIds(["#" + me.pre + "mn2_select_chain", "#" + me.pre + "definedSets"], "click", function(e) { me.icn3d; e.preventDefault();
|
|
7460
7460
|
me.htmlCls.dialogCls.openDlg('dl_select_chain', 'Select Structure/Chain/Custom Selection');
|
|
7461
7461
|
});
|
|
7462
7462
|
|
|
@@ -7467,242 +7467,242 @@ class ClickMenu {
|
|
|
7467
7467
|
|
|
7468
7468
|
let thisClass = this;
|
|
7469
7469
|
// mn 3
|
|
7470
|
-
me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsRibbon","#" + me.pre + "tool_proteinsRibbon"], "click", function(e) { let ic = me.icn3d;
|
|
7470
|
+
me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsRibbon","#" + me.pre + "tool_proteinsRibbon"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7471
7471
|
ic.setOptionCls.setStyle('proteins', 'ribbon');
|
|
7472
7472
|
thisClass.setLogCmd('style proteins ribbon', true);
|
|
7473
7473
|
});
|
|
7474
7474
|
|
|
7475
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsStrand", "click", function(e) { let ic = me.icn3d;
|
|
7475
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsStrand", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7476
7476
|
ic.setOptionCls.setStyle('proteins', 'strand');
|
|
7477
7477
|
thisClass.setLogCmd('style proteins strand', true);
|
|
7478
7478
|
});
|
|
7479
7479
|
|
|
7480
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsCylinder", "click", function(e) { let ic = me.icn3d;
|
|
7480
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsCylinder", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7481
7481
|
ic.setOptionCls.setStyle('proteins', 'cylinder and plate');
|
|
7482
7482
|
thisClass.setLogCmd('style proteins cylinder and plate', true);
|
|
7483
7483
|
});
|
|
7484
7484
|
|
|
7485
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsSchematic", "click", function(e) { let ic = me.icn3d;
|
|
7485
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsSchematic", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7486
7486
|
ic.setOptionCls.setStyle('proteins', 'schematic');
|
|
7487
7487
|
thisClass.setLogCmd('style proteins schematic', true);
|
|
7488
7488
|
});
|
|
7489
7489
|
|
|
7490
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsCalpha", "click", function(e) { let ic = me.icn3d;
|
|
7490
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsCalpha", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7491
7491
|
ic.setOptionCls.setStyle('proteins', 'c alpha trace');
|
|
7492
7492
|
thisClass.setLogCmd('style proteins c alpha trace', true);
|
|
7493
7493
|
});
|
|
7494
7494
|
|
|
7495
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsBackbone", "click", function(e) { let ic = me.icn3d;
|
|
7495
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsBackbone", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7496
7496
|
ic.setOptionCls.setStyle('proteins', 'backbone');
|
|
7497
7497
|
thisClass.setLogCmd('style proteins backbone', true);
|
|
7498
7498
|
});
|
|
7499
7499
|
|
|
7500
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsBfactor", "click", function(e) { let ic = me.icn3d;
|
|
7500
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsBfactor", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7501
7501
|
ic.setOptionCls.setStyle('proteins', 'b factor tube');
|
|
7502
7502
|
thisClass.setLogCmd('style proteins b factor tube', true);
|
|
7503
7503
|
});
|
|
7504
7504
|
|
|
7505
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsLines", "click", function(e) { let ic = me.icn3d;
|
|
7505
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7506
7506
|
ic.setOptionCls.setStyle('proteins', 'lines');
|
|
7507
7507
|
thisClass.setLogCmd('style proteins lines', true);
|
|
7508
7508
|
});
|
|
7509
7509
|
|
|
7510
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsStick", "click", function(e) { let ic = me.icn3d;
|
|
7510
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7511
7511
|
ic.setOptionCls.setStyle('proteins', 'stick');
|
|
7512
7512
|
thisClass.setLogCmd('style proteins stick', true);
|
|
7513
7513
|
});
|
|
7514
7514
|
|
|
7515
|
-
me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsBallstick", "#" + me.pre + "tool_proteinsBallstick"], "click", function(e) { let ic = me.icn3d;
|
|
7515
|
+
me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsBallstick", "#" + me.pre + "tool_proteinsBallstick"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7516
7516
|
ic.setOptionCls.setStyle('proteins', 'ball and stick');
|
|
7517
7517
|
thisClass.setLogCmd('style proteins ball and stick', true);
|
|
7518
7518
|
});
|
|
7519
7519
|
|
|
7520
|
-
me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsSphere", "#" + me.pre + "tool_proteinsSphere"], "click", function(e) { let ic = me.icn3d;
|
|
7520
|
+
me.myEventCls.onIds(["#" + me.pre + "mn3_proteinsSphere", "#" + me.pre + "tool_proteinsSphere"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7521
7521
|
ic.setOptionCls.setStyle('proteins', 'sphere');
|
|
7522
7522
|
thisClass.setLogCmd('style proteins sphere', true);
|
|
7523
7523
|
});
|
|
7524
7524
|
|
|
7525
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsNo", "click", function(e) { let ic = me.icn3d;
|
|
7525
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_proteinsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7526
7526
|
ic.setOptionCls.setStyle('proteins', 'nothing');
|
|
7527
7527
|
thisClass.setLogCmd('style proteins nothing', true);
|
|
7528
7528
|
});
|
|
7529
7529
|
|
|
7530
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_sidecLines", "click", function(e) { let ic = me.icn3d;
|
|
7530
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_sidecLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7531
7531
|
ic.setOptionCls.setStyle('sidec', 'lines2');
|
|
7532
7532
|
thisClass.setLogCmd('style sidec lines2', true);
|
|
7533
7533
|
});
|
|
7534
7534
|
|
|
7535
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_sidecStick", "click", function(e) { let ic = me.icn3d;
|
|
7535
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_sidecStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7536
7536
|
ic.setOptionCls.setStyle('sidec', 'stick2');
|
|
7537
7537
|
thisClass.setLogCmd('style sidec stick2', true);
|
|
7538
7538
|
});
|
|
7539
7539
|
|
|
7540
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_sidecBallstick", "click", function(e) { let ic = me.icn3d;
|
|
7540
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_sidecBallstick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7541
7541
|
ic.setOptionCls.setStyle('sidec', 'ball and stick2');
|
|
7542
7542
|
thisClass.setLogCmd('style sidec ball and stick2', true);
|
|
7543
7543
|
});
|
|
7544
7544
|
|
|
7545
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_sidecSphere", "click", function(e) { let ic = me.icn3d;
|
|
7545
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_sidecSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7546
7546
|
ic.setOptionCls.setStyle('sidec', 'sphere2');
|
|
7547
7547
|
thisClass.setLogCmd('style sidec sphere2', true);
|
|
7548
7548
|
});
|
|
7549
7549
|
|
|
7550
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_sidecNo", "click", function(e) { let ic = me.icn3d;
|
|
7550
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_sidecNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7551
7551
|
ic.setOptionCls.setStyle('sidec', 'nothing');
|
|
7552
7552
|
thisClass.setLogCmd('style sidec nothing', true);
|
|
7553
7553
|
});
|
|
7554
7554
|
|
|
7555
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseLines", "click", function(e) { let ic = me.icn3d;
|
|
7555
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7556
7556
|
ic.setOptionCls.setStyle('ntbase', 'lines2');
|
|
7557
7557
|
thisClass.setLogCmd('style ntbase lines2', true);
|
|
7558
7558
|
});
|
|
7559
7559
|
|
|
7560
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseStick", "click", function(e) { let ic = me.icn3d;
|
|
7560
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7561
7561
|
ic.setOptionCls.setStyle('ntbase', 'stick2');
|
|
7562
7562
|
thisClass.setLogCmd('style ntbase stick2', true);
|
|
7563
7563
|
});
|
|
7564
7564
|
|
|
7565
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseBallstick", "click", function(e) { let ic = me.icn3d;
|
|
7565
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseBallstick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7566
7566
|
ic.setOptionCls.setStyle('ntbase', 'ball and stick2');
|
|
7567
7567
|
thisClass.setLogCmd('style ntbase ball and stick2', true);
|
|
7568
7568
|
});
|
|
7569
7569
|
|
|
7570
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseSphere", "click", function(e) { let ic = me.icn3d;
|
|
7570
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7571
7571
|
ic.setOptionCls.setStyle('ntbase', 'sphere2');
|
|
7572
7572
|
thisClass.setLogCmd('style ntbase sphere2', true);
|
|
7573
7573
|
});
|
|
7574
7574
|
|
|
7575
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseNo", "click", function(e) { let ic = me.icn3d;
|
|
7575
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ntbaseNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7576
7576
|
ic.setOptionCls.setStyle('ntbase', 'nothing');
|
|
7577
7577
|
thisClass.setLogCmd('style ntbase nothing', true);
|
|
7578
7578
|
});
|
|
7579
7579
|
|
|
7580
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_nuclCartoon", "click", function(e) { let ic = me.icn3d;
|
|
7580
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_nuclCartoon", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7581
7581
|
ic.setOptionCls.setStyle('nucleotides', 'nucleotide cartoon');
|
|
7582
7582
|
thisClass.setLogCmd('style nucleotides nucleotide cartoon', true);
|
|
7583
7583
|
});
|
|
7584
7584
|
|
|
7585
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_nuclBackbone", "click", function(e) { let ic = me.icn3d;
|
|
7585
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_nuclBackbone", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7586
7586
|
ic.setOptionCls.setStyle('nucleotides', 'backbone');
|
|
7587
7587
|
thisClass.setLogCmd('style nucleotides backbone', true);
|
|
7588
7588
|
});
|
|
7589
7589
|
|
|
7590
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_nuclSchematic", "click", function(e) { let ic = me.icn3d;
|
|
7590
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_nuclSchematic", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7591
7591
|
ic.setOptionCls.setStyle('nucleotides', 'schematic');
|
|
7592
7592
|
thisClass.setLogCmd('style nucleotides schematic', true);
|
|
7593
7593
|
});
|
|
7594
7594
|
|
|
7595
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_nuclPhos", "click", function(e) { let ic = me.icn3d;
|
|
7595
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_nuclPhos", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7596
7596
|
ic.setOptionCls.setStyle('nucleotides', 'o3 trace');
|
|
7597
7597
|
thisClass.setLogCmd('style nucleotides o3 trace', true);
|
|
7598
7598
|
});
|
|
7599
7599
|
|
|
7600
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_nuclLines", "click", function(e) { let ic = me.icn3d;
|
|
7600
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_nuclLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7601
7601
|
ic.setOptionCls.setStyle('nucleotides', 'lines');
|
|
7602
7602
|
thisClass.setLogCmd('style nucleotides lines', true);
|
|
7603
7603
|
});
|
|
7604
7604
|
|
|
7605
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_nuclStick", "click", function(e) { let ic = me.icn3d;
|
|
7605
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_nuclStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7606
7606
|
ic.setOptionCls.setStyle('nucleotides', 'stick');
|
|
7607
7607
|
thisClass.setLogCmd('style nucleotides stick', true);
|
|
7608
7608
|
});
|
|
7609
7609
|
|
|
7610
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_nuclBallstick", "click", function(e) { let ic = me.icn3d;
|
|
7610
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_nuclBallstick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7611
7611
|
ic.setOptionCls.setStyle('nucleotides', 'ball and stick');
|
|
7612
7612
|
thisClass.setLogCmd('style nucleotides ball and stick', true);
|
|
7613
7613
|
});
|
|
7614
7614
|
|
|
7615
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_nuclSphere", "click", function(e) { let ic = me.icn3d;
|
|
7615
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_nuclSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7616
7616
|
ic.setOptionCls.setStyle('nucleotides', 'sphere');
|
|
7617
7617
|
thisClass.setLogCmd('style nucleotides sphere', true);
|
|
7618
7618
|
});
|
|
7619
7619
|
|
|
7620
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_nuclNo", "click", function(e) { let ic = me.icn3d;
|
|
7620
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_nuclNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7621
7621
|
ic.setOptionCls.setStyle('nucleotides', 'nothing');
|
|
7622
7622
|
thisClass.setLogCmd('style nucleotides nothing', true);
|
|
7623
7623
|
});
|
|
7624
7624
|
|
|
7625
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ligLines", "click", function(e) { let ic = me.icn3d;
|
|
7625
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ligLines", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7626
7626
|
ic.setOptionCls.setStyle('chemicals', 'lines');
|
|
7627
7627
|
thisClass.setLogCmd('style chemicals lines', true);
|
|
7628
7628
|
});
|
|
7629
7629
|
|
|
7630
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ligStick", "click", function(e) { let ic = me.icn3d;
|
|
7630
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ligStick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7631
7631
|
ic.setOptionCls.setStyle('chemicals', 'stick');
|
|
7632
7632
|
thisClass.setLogCmd('style chemicals stick', true);
|
|
7633
7633
|
});
|
|
7634
7634
|
|
|
7635
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ligBallstick", "click", function(e) { let ic = me.icn3d;
|
|
7635
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ligBallstick", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7636
7636
|
ic.setOptionCls.setStyle('chemicals', 'ball and stick');
|
|
7637
7637
|
thisClass.setLogCmd('style chemicals ball and stick', true);
|
|
7638
7638
|
});
|
|
7639
7639
|
|
|
7640
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ligSchematic", "click", function(e) { let ic = me.icn3d;
|
|
7640
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ligSchematic", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7641
7641
|
ic.setOptionCls.setStyle('chemicals', 'schematic');
|
|
7642
7642
|
thisClass.setLogCmd('style chemicals schematic', true);
|
|
7643
7643
|
});
|
|
7644
7644
|
|
|
7645
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ligSphere", "click", function(e) { let ic = me.icn3d;
|
|
7645
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ligSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7646
7646
|
ic.setOptionCls.setStyle('chemicals', 'sphere');
|
|
7647
7647
|
thisClass.setLogCmd('style chemicals sphere', true);
|
|
7648
7648
|
});
|
|
7649
7649
|
|
|
7650
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ligNo", "click", function(e) { let ic = me.icn3d;
|
|
7650
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ligNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7651
7651
|
ic.setOptionCls.setStyle('chemicals', 'nothing');
|
|
7652
7652
|
thisClass.setLogCmd('style chemicals nothing', true);
|
|
7653
7653
|
});
|
|
7654
7654
|
|
|
7655
7655
|
|
|
7656
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_glycansCartYes", "click", function(e) { let ic = me.icn3d;
|
|
7656
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_glycansCartYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7657
7657
|
ic.bGlycansCartoon = true;
|
|
7658
7658
|
ic.drawCls.draw();
|
|
7659
7659
|
thisClass.setLogCmd('glycans cartoon yes', true);
|
|
7660
7660
|
});
|
|
7661
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_glycansCartNo", "click", function(e) { let ic = me.icn3d;
|
|
7661
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_glycansCartNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7662
7662
|
ic.bGlycansCartoon = false;
|
|
7663
7663
|
ic.drawCls.draw();
|
|
7664
7664
|
thisClass.setLogCmd('glycans cartoon no', true);
|
|
7665
7665
|
});
|
|
7666
7666
|
|
|
7667
7667
|
|
|
7668
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_hydrogensYes", "click", function(e) { let ic = me.icn3d;
|
|
7668
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_hydrogensYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7669
7669
|
ic.showInterCls.showHydrogens();
|
|
7670
7670
|
ic.drawCls.draw();
|
|
7671
7671
|
thisClass.setLogCmd('hydrogens', true);
|
|
7672
7672
|
});
|
|
7673
7673
|
|
|
7674
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_hydrogensNo", "click", function(e) { let ic = me.icn3d;
|
|
7674
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_hydrogensNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7675
7675
|
ic.showInterCls.hideHydrogens();
|
|
7676
7676
|
ic.drawCls.draw();
|
|
7677
7677
|
thisClass.setLogCmd('set hydrogens off', true);
|
|
7678
7678
|
});
|
|
7679
7679
|
|
|
7680
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ionsSphere", "click", function(e) { let ic = me.icn3d;
|
|
7680
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ionsSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7681
7681
|
ic.setOptionCls.setStyle('ions', 'sphere');
|
|
7682
7682
|
thisClass.setLogCmd('style ions sphere', true);
|
|
7683
7683
|
});
|
|
7684
7684
|
|
|
7685
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ionsDot", "click", function(e) { let ic = me.icn3d;
|
|
7685
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ionsDot", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7686
7686
|
ic.setOptionCls.setStyle('ions', 'dot');
|
|
7687
7687
|
thisClass.setLogCmd('style ions dot', true);
|
|
7688
7688
|
});
|
|
7689
7689
|
|
|
7690
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_ionsNo", "click", function(e) { let ic = me.icn3d;
|
|
7690
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_ionsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7691
7691
|
ic.setOptionCls.setStyle('ions', 'nothing');
|
|
7692
7692
|
thisClass.setLogCmd('style ions nothing', true);
|
|
7693
7693
|
});
|
|
7694
7694
|
|
|
7695
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_waterSphere", "click", function(e) { let ic = me.icn3d;
|
|
7695
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_waterSphere", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7696
7696
|
ic.setOptionCls.setStyle('water', 'sphere');
|
|
7697
7697
|
thisClass.setLogCmd('style water sphere', true);
|
|
7698
7698
|
});
|
|
7699
7699
|
|
|
7700
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_waterDot", "click", function(e) { let ic = me.icn3d;
|
|
7700
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_waterDot", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7701
7701
|
ic.setOptionCls.setStyle('water', 'dot');
|
|
7702
7702
|
thisClass.setLogCmd('style water dot', true);
|
|
7703
7703
|
});
|
|
7704
7704
|
|
|
7705
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_waterNo", "click", function(e) { let ic = me.icn3d;
|
|
7705
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_waterNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7706
7706
|
ic.setOptionCls.setStyle('water', 'nothing');
|
|
7707
7707
|
thisClass.setLogCmd('style water nothing', true);
|
|
7708
7708
|
});
|
|
@@ -7714,16 +7714,16 @@ class ClickMenu {
|
|
|
7714
7714
|
|
|
7715
7715
|
let thisClass = this;
|
|
7716
7716
|
// mn 4
|
|
7717
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrum", "click", function(e) { let ic = me.icn3d;
|
|
7717
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrum", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7718
7718
|
ic.setOptionCls.setOption('color', 'spectrum');
|
|
7719
7719
|
thisClass.setLogCmd('color spectrum', true);
|
|
7720
7720
|
});
|
|
7721
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumChain", "click", function(e) { let ic = me.icn3d;
|
|
7721
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumChain", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7722
7722
|
ic.setOptionCls.setOption('color', 'spectrum for chains');
|
|
7723
7723
|
thisClass.setLogCmd('color spectrum for chains', true);
|
|
7724
7724
|
});
|
|
7725
7725
|
|
|
7726
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumAcrossSets", "click", function(e) { let ic = me.icn3d;
|
|
7726
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumAcrossSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7727
7727
|
thisClass.SetChainsAdvancedMenu();
|
|
7728
7728
|
let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
|
|
7729
7729
|
if($("#" + me.pre + "atomsCustomColorSpectrumAcross").length) {
|
|
@@ -7734,7 +7734,7 @@ class ClickMenu {
|
|
|
7734
7734
|
$("#" + me.pre + "atomsCustomColorSpectrumAcross").resizable();
|
|
7735
7735
|
});
|
|
7736
7736
|
|
|
7737
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumSets", "click", function(e) { let ic = me.icn3d;
|
|
7737
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrSpectrumSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7738
7738
|
thisClass.SetChainsAdvancedMenu();
|
|
7739
7739
|
let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
|
|
7740
7740
|
if($("#" + me.pre + "atomsCustomColorSpectrum").length) {
|
|
@@ -7745,7 +7745,7 @@ class ClickMenu {
|
|
|
7745
7745
|
$("#" + me.pre + "atomsCustomColorSpectrum").resizable();
|
|
7746
7746
|
});
|
|
7747
7747
|
|
|
7748
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbowAcrossSets", "click", function(e) { let ic = me.icn3d;
|
|
7748
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbowAcrossSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7749
7749
|
thisClass.SetChainsAdvancedMenu();
|
|
7750
7750
|
let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
|
|
7751
7751
|
if($("#" + me.pre + "atomsCustomColorRainbowAcross").length) {
|
|
@@ -7756,7 +7756,7 @@ class ClickMenu {
|
|
|
7756
7756
|
$("#" + me.pre + "atomsCustomColorRainbowAcross").resizable();
|
|
7757
7757
|
});
|
|
7758
7758
|
|
|
7759
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbowSets", "click", function(e) { let ic = me.icn3d;
|
|
7759
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbowSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7760
7760
|
thisClass.SetChainsAdvancedMenu();
|
|
7761
7761
|
let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
|
|
7762
7762
|
if($("#" + me.pre + "atomsCustomColorRainbow").length) {
|
|
@@ -7767,64 +7767,64 @@ class ClickMenu {
|
|
|
7767
7767
|
$("#" + me.pre + "atomsCustomColorRainbow").resizable();
|
|
7768
7768
|
});
|
|
7769
7769
|
|
|
7770
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbow", "click", function(e) { let ic = me.icn3d;
|
|
7770
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrRainbow", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7771
7771
|
ic.setOptionCls.setOption('color', 'rainbow');
|
|
7772
7772
|
thisClass.setLogCmd('color rainbow', true);
|
|
7773
7773
|
});
|
|
7774
|
-
me.myEventCls.onIds(["#" + me.pre + "mn4_clrRainbowChain", "#" + me.pre + "tool_clrRainbowChain"], "click", function(e) { let ic = me.icn3d;
|
|
7774
|
+
me.myEventCls.onIds(["#" + me.pre + "mn4_clrRainbowChain", "#" + me.pre + "tool_clrRainbowChain"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7775
7775
|
ic.setOptionCls.setOption('color', 'rainbow for chains');
|
|
7776
7776
|
thisClass.setLogCmd('color rainbow for chains', true);
|
|
7777
7777
|
});
|
|
7778
7778
|
|
|
7779
|
-
me.myEventCls.onIds(["#" + me.pre + "mn4_clrChain", "#" + me.pre + "tool_clrChain"], "click", function(e) { let ic = me.icn3d;
|
|
7779
|
+
me.myEventCls.onIds(["#" + me.pre + "mn4_clrChain", "#" + me.pre + "tool_clrChain"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7780
7780
|
ic.setOptionCls.setOption('color', 'chain');
|
|
7781
7781
|
thisClass.setLogCmd('color chain', true);
|
|
7782
7782
|
});
|
|
7783
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrStructure", "click", function(e) { let ic = me.icn3d;
|
|
7783
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrStructure", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7784
7784
|
ic.setOptionCls.setOption('color', 'structure');
|
|
7785
7785
|
thisClass.setLogCmd('color structure', true);
|
|
7786
7786
|
});
|
|
7787
7787
|
|
|
7788
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrdomain", "click", function(e) { let ic = me.icn3d;
|
|
7788
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrdomain", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7789
7789
|
ic.setOptionCls.setOption('color', 'domain');
|
|
7790
7790
|
thisClass.setLogCmd('color domain', true);
|
|
7791
7791
|
});
|
|
7792
7792
|
|
|
7793
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrsets", "click", function(e) { let ic = me.icn3d;
|
|
7793
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrsets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7794
7794
|
ic.setOptionCls.setOption('color', 'defined sets');
|
|
7795
7795
|
thisClass.setLogCmd('color defined sets', true);
|
|
7796
7796
|
});
|
|
7797
7797
|
|
|
7798
7798
|
|
|
7799
|
-
me.myEventCls.onIds(["#" + me.pre + "mn4_clrSSGreen", "#" + me.pre + "tool_clrSSGreen"], "click", function(e) { let ic = me.icn3d;
|
|
7799
|
+
me.myEventCls.onIds(["#" + me.pre + "mn4_clrSSGreen", "#" + me.pre + "tool_clrSSGreen"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7800
7800
|
ic.sheetcolor = 'green';
|
|
7801
7801
|
ic.setOptionCls.setOption('color', 'secondary structure green');
|
|
7802
7802
|
thisClass.setLogCmd('color secondary structure green', true);
|
|
7803
7803
|
});
|
|
7804
7804
|
|
|
7805
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrSSYellow", "click", function(e) { let ic = me.icn3d;
|
|
7805
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrSSYellow", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7806
7806
|
ic.sheetcolor = 'yellow';
|
|
7807
7807
|
ic.setOptionCls.setOption('color', 'secondary structure yellow');
|
|
7808
7808
|
thisClass.setLogCmd('color secondary structure yellow', true);
|
|
7809
7809
|
});
|
|
7810
7810
|
|
|
7811
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrSSSpectrum", "click", function(e) { let ic = me.icn3d;
|
|
7811
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrSSSpectrum", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7812
7812
|
ic.setOptionCls.setOption('color', 'secondary structure spectrum');
|
|
7813
7813
|
thisClass.setLogCmd('color secondary structure spectrum', true);
|
|
7814
7814
|
});
|
|
7815
7815
|
|
|
7816
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrResidue", "click", function(e) { let ic = me.icn3d;
|
|
7816
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrResidue", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7817
7817
|
//ic.legendClick = 2;
|
|
7818
7818
|
ic.setOptionCls.setOption('color', 'residue');
|
|
7819
7819
|
thisClass.setLogCmd('color residue', true);
|
|
7820
7820
|
});
|
|
7821
7821
|
|
|
7822
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrResidueCustom", "click", function(e) { me.icn3d;
|
|
7822
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrResidueCustom", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7823
7823
|
//ic.legendClick = 2;
|
|
7824
7824
|
me.htmlCls.dialogCls.openDlg('dl_rescolorfile', 'Please input the file on residue colors');
|
|
7825
7825
|
});
|
|
7826
7826
|
|
|
7827
|
-
me.myEventCls.onIds("#" + me.pre + "reload_rescolorfile", "click", function(e) { let ic = me.icn3d;
|
|
7827
|
+
me.myEventCls.onIds("#" + me.pre + "reload_rescolorfile", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7828
7828
|
|
|
7829
7829
|
if(!me.cfg.notebook) dialog.dialog( "close" );
|
|
7830
7830
|
let file = $("#" + me.pre + "rescolorfile")[0].files[0];
|
|
@@ -7848,7 +7848,7 @@ class ClickMenu {
|
|
|
7848
7848
|
}
|
|
7849
7849
|
});
|
|
7850
7850
|
|
|
7851
|
-
me.myEventCls.onIds("#" + me.pre + "reload_customcolorfile", "click", function(e) { let ic = me.icn3d;
|
|
7851
|
+
me.myEventCls.onIds("#" + me.pre + "reload_customcolorfile", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7852
7852
|
|
|
7853
7853
|
if(!me.cfg.notebook) dialog.dialog( "close" );
|
|
7854
7854
|
ic.startColor = $("#" + me.pre + "startColor").val();
|
|
@@ -7863,12 +7863,12 @@ class ClickMenu {
|
|
|
7863
7863
|
ic.addTrackCls.setCustomFile('color', ic.startColor, ic.midColor, ic.endColor);
|
|
7864
7864
|
});
|
|
7865
7865
|
|
|
7866
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_customref", "click", function(e) { me.icn3d;
|
|
7866
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_customref", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7867
7867
|
|
|
7868
7868
|
me.htmlCls.dialogCls.openDlg('dl_customref', 'Set custom reference numbers');
|
|
7869
7869
|
});
|
|
7870
7870
|
|
|
7871
|
-
me.myEventCls.onIds("#" + me.pre + "reload_customreffile", "click", function(e) { let ic = me.icn3d;
|
|
7871
|
+
me.myEventCls.onIds("#" + me.pre + "reload_customreffile", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7872
7872
|
|
|
7873
7873
|
if(!me.cfg.notebook) dialog.dialog( "close" );
|
|
7874
7874
|
|
|
@@ -7891,98 +7891,98 @@ class ClickMenu {
|
|
|
7891
7891
|
}
|
|
7892
7892
|
});
|
|
7893
7893
|
|
|
7894
|
-
me.myEventCls.onIds("#" + me.pre + "remove_legend", "click", function(e) { me.icn3d;
|
|
7894
|
+
me.myEventCls.onIds("#" + me.pre + "remove_legend", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7895
7895
|
|
|
7896
7896
|
$("#" + me.pre + "legend").hide();
|
|
7897
7897
|
|
|
7898
7898
|
thisClass.setLogCmd('remove legend', true);
|
|
7899
7899
|
});
|
|
7900
|
-
me.myEventCls.onIds("#" + me.pre + "reload_customtubefile", "click", function(e) { let ic = me.icn3d;
|
|
7900
|
+
me.myEventCls.onIds("#" + me.pre + "reload_customtubefile", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7901
7901
|
|
|
7902
7902
|
if(!me.cfg.notebook) dialog.dialog( "close" );
|
|
7903
7903
|
ic.addTrackCls.setCustomFile('tube');
|
|
7904
7904
|
});
|
|
7905
7905
|
|
|
7906
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrCharge", "click", function(e) { let ic = me.icn3d;
|
|
7906
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrCharge", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7907
7907
|
//ic.legendClick = 3;
|
|
7908
7908
|
ic.setOptionCls.setOption('color', 'charge');
|
|
7909
7909
|
thisClass.setLogCmd('color charge', true);
|
|
7910
7910
|
});
|
|
7911
7911
|
|
|
7912
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrHydrophobic", "click", function(e) { let ic = me.icn3d;
|
|
7912
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrHydrophobic", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7913
7913
|
//ic.legendClick = 4;
|
|
7914
7914
|
ic.setOptionCls.setOption('color', 'hydrophobic');
|
|
7915
7915
|
thisClass.setLogCmd('color hydrophobic', true);
|
|
7916
7916
|
});
|
|
7917
7917
|
|
|
7918
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrNormalizedHP", "click", function(e) { let ic = me.icn3d;
|
|
7918
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrNormalizedHP", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7919
7919
|
//ic.legendClick = 4;
|
|
7920
7920
|
ic.setOptionCls.setOption('color', 'normalized hydrophobic');
|
|
7921
7921
|
thisClass.setLogCmd('color normalized hydrophobic', true);
|
|
7922
7922
|
});
|
|
7923
7923
|
|
|
7924
7924
|
|
|
7925
|
-
me.myEventCls.onIds(["#" + me.pre + "mn4_clrAtom", "#" + me.pre + "tool_clrAtom"], "click", function(e) { let ic = me.icn3d;
|
|
7925
|
+
me.myEventCls.onIds(["#" + me.pre + "mn4_clrAtom", "#" + me.pre + "tool_clrAtom"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7926
7926
|
//ic.legendClick = 1;
|
|
7927
7927
|
ic.setOptionCls.setOption('color', 'atom');
|
|
7928
7928
|
thisClass.setLogCmd('color atom', true);
|
|
7929
7929
|
});
|
|
7930
7930
|
|
|
7931
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrBfactor", "click", function(e) { let ic = me.icn3d;
|
|
7931
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrBfactor", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7932
7932
|
//ic.legendClick = 5;
|
|
7933
7933
|
ic.setOptionCls.setOption('color', 'b factor');
|
|
7934
7934
|
thisClass.setLogCmd('color b factor', true);
|
|
7935
7935
|
});
|
|
7936
7936
|
|
|
7937
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrConfidence", "click", function(e) { let ic = me.icn3d;
|
|
7937
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrConfidence", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7938
7938
|
//ic.legendClick = 6;
|
|
7939
7939
|
ic.setOptionCls.setOption('color', 'confidence');
|
|
7940
7940
|
thisClass.setLogCmd('color confidence', true);
|
|
7941
7941
|
});
|
|
7942
7942
|
|
|
7943
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrIgstrand", "click", function(e) { let ic = me.icn3d;
|
|
7943
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrIgstrand", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7944
7944
|
//ic.legendClick = 6;
|
|
7945
7945
|
ic.setOptionCls.setOption('color', 'ig strand');
|
|
7946
7946
|
thisClass.setLogCmd('color ig strand', true);
|
|
7947
7947
|
});
|
|
7948
7948
|
|
|
7949
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrIgproto", "click", function(e) { let ic = me.icn3d;
|
|
7949
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrIgproto", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7950
7950
|
//ic.legendClick = 6;
|
|
7951
7951
|
ic.setOptionCls.setOption('color', 'ig protodomain');
|
|
7952
7952
|
thisClass.setLogCmd('color ig protodomain', true);
|
|
7953
7953
|
});
|
|
7954
7954
|
|
|
7955
7955
|
|
|
7956
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrArea", "click", function(e) { me.icn3d;
|
|
7956
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrArea", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7957
7957
|
me.htmlCls.dialogCls.openDlg('dl_colorbyarea', "Color based on residue's solvent accessibility");
|
|
7958
7958
|
});
|
|
7959
|
-
me.myEventCls.onIds("#" + me.pre + "applycolorbyarea", "click", function(e) { let ic = me.icn3d;
|
|
7959
|
+
me.myEventCls.onIds("#" + me.pre + "applycolorbyarea", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7960
7960
|
ic.midpercent = $("#" + me.pre + 'midpercent').val();
|
|
7961
7961
|
ic.setOptionCls.setOption('color', 'area');
|
|
7962
7962
|
thisClass.setLogCmd('color area | ' + ic.midpercent, true);
|
|
7963
7963
|
|
|
7964
7964
|
});
|
|
7965
7965
|
|
|
7966
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrBfactorNorm", "click", function(e) { let ic = me.icn3d;
|
|
7966
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrBfactorNorm", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7967
7967
|
ic.setOptionCls.setOption('color', 'b factor percentile');
|
|
7968
7968
|
thisClass.setLogCmd('color b factor percentile', true);
|
|
7969
7969
|
});
|
|
7970
7970
|
|
|
7971
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrIdentity", "click", function(e) { let ic = me.icn3d;
|
|
7971
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrIdentity", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7972
7972
|
ic.setOptionCls.setOption('color', 'identity');
|
|
7973
7973
|
thisClass.setLogCmd('color identity', true);
|
|
7974
7974
|
});
|
|
7975
7975
|
|
|
7976
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrConserved", "click", function(e) { let ic = me.icn3d;
|
|
7976
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrConserved", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7977
7977
|
ic.setOptionCls.setOption('color', 'conservation');
|
|
7978
7978
|
thisClass.setLogCmd('color conservation', true);
|
|
7979
7979
|
});
|
|
7980
7980
|
|
|
7981
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrCustom", "click", function(e) { me.icn3d;
|
|
7981
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrCustom", "click", function(e) { me.icn3d; e.preventDefault();
|
|
7982
7982
|
me.htmlCls.dialogCls.openDlg('dl_clr', 'Color picker');
|
|
7983
7983
|
});
|
|
7984
7984
|
|
|
7985
|
-
$(document).on("click", ".icn3d-color-rad-text", function(e) { let ic = me.icn3d;
|
|
7985
|
+
$(document).on("click", ".icn3d-color-rad-text", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7986
7986
|
e.stopImmediatePropagation();
|
|
7987
7987
|
e.preventDefault();
|
|
7988
7988
|
let color = $(this).attr('color');
|
|
@@ -7990,22 +7990,22 @@ class ClickMenu {
|
|
|
7990
7990
|
thisClass.setLogCmd("color " + color, true);
|
|
7991
7991
|
});
|
|
7992
7992
|
|
|
7993
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrSave", "click", function(e) { let ic = me.icn3d;
|
|
7993
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrSave", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7994
7994
|
ic.setOptionCls.saveColor();
|
|
7995
7995
|
thisClass.setLogCmd('save color', true);
|
|
7996
7996
|
});
|
|
7997
7997
|
|
|
7998
|
-
me.myEventCls.onIds("#" + me.pre + "mn4_clrApplySave", "click", function(e) { let ic = me.icn3d;
|
|
7998
|
+
me.myEventCls.onIds("#" + me.pre + "mn4_clrApplySave", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
7999
7999
|
ic.setOptionCls.applySavedColor();
|
|
8000
8000
|
thisClass.setLogCmd('apply saved color', true);
|
|
8001
8001
|
});
|
|
8002
8002
|
|
|
8003
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_styleSave", "click", function(e) { let ic = me.icn3d;
|
|
8003
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_styleSave", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8004
8004
|
ic.setOptionCls.saveStyle();
|
|
8005
8005
|
thisClass.setLogCmd('save style', true);
|
|
8006
8006
|
});
|
|
8007
8007
|
|
|
8008
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_styleApplySave", "click", function(e) { let ic = me.icn3d;
|
|
8008
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_styleApplySave", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8009
8009
|
ic.setOptionCls.applySavedStyle();
|
|
8010
8010
|
thisClass.setLogCmd('apply saved style', true);
|
|
8011
8011
|
});
|
|
@@ -8017,7 +8017,7 @@ class ClickMenu {
|
|
|
8017
8017
|
|
|
8018
8018
|
let thisClass = this;
|
|
8019
8019
|
// mn 5
|
|
8020
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_neighborsYes", "click", function(e) { let ic = me.icn3d;
|
|
8020
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_neighborsYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8021
8021
|
ic.bConsiderNeighbors = true;
|
|
8022
8022
|
ic.applyMapCls.removeLastSurface();
|
|
8023
8023
|
ic.applyMapCls.applySurfaceOptions();
|
|
@@ -8025,7 +8025,7 @@ class ClickMenu {
|
|
|
8025
8025
|
thisClass.setLogCmd('set surface neighbors on', true);
|
|
8026
8026
|
});
|
|
8027
8027
|
|
|
8028
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_neighborsNo", "click", function(e) { let ic = me.icn3d;
|
|
8028
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_neighborsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8029
8029
|
ic.bConsiderNeighbors = false;
|
|
8030
8030
|
ic.applyMapCls.removeLastSurface();
|
|
8031
8031
|
ic.applyMapCls.applySurfaceOptions();
|
|
@@ -8033,48 +8033,48 @@ class ClickMenu {
|
|
|
8033
8033
|
thisClass.setLogCmd('set surface neighbors off', true);
|
|
8034
8034
|
});
|
|
8035
8035
|
|
|
8036
|
-
me.myEventCls.onIds(["#" + me.pre + "mn5_surfaceVDW", "#" + me.pre + "tool_surfaceVDW"], "click", function(e) { let ic = me.icn3d;
|
|
8036
|
+
me.myEventCls.onIds(["#" + me.pre + "mn5_surfaceVDW", "#" + me.pre + "tool_surfaceVDW"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8037
8037
|
ic.bConsiderNeighbors = false;
|
|
8038
8038
|
ic.setOptionCls.setOption('surface', 'Van der Waals surface');
|
|
8039
8039
|
thisClass.setLogCmd('set surface Van der Waals surface', true);
|
|
8040
8040
|
});
|
|
8041
8041
|
|
|
8042
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceSAS", "click", function(e) { let ic = me.icn3d;
|
|
8042
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceSAS", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8043
8043
|
ic.bConsiderNeighbors = false;
|
|
8044
8044
|
ic.setOptionCls.setOption('surface', 'solvent accessible surface');
|
|
8045
8045
|
thisClass.setLogCmd('set surface solvent accessible surface', true);
|
|
8046
8046
|
});
|
|
8047
8047
|
|
|
8048
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceMolecular", "click", function(e) { let ic = me.icn3d;
|
|
8048
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceMolecular", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8049
8049
|
ic.bConsiderNeighbors = false;
|
|
8050
8050
|
ic.setOptionCls.setOption('surface', 'molecular surface');
|
|
8051
8051
|
thisClass.setLogCmd('set surface molecular surface', true);
|
|
8052
8052
|
});
|
|
8053
8053
|
|
|
8054
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceVDWContext", "click", function(e) { let ic = me.icn3d;
|
|
8054
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceVDWContext", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8055
8055
|
ic.bConsiderNeighbors = true;
|
|
8056
8056
|
ic.setOptionCls.setOption('surface', 'Van der Waals surface with context');
|
|
8057
8057
|
thisClass.setLogCmd('set surface Van der Waals surface with context', true);
|
|
8058
8058
|
});
|
|
8059
8059
|
|
|
8060
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceSASContext", "click", function(e) { let ic = me.icn3d;
|
|
8060
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceSASContext", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8061
8061
|
ic.bConsiderNeighbors = true;
|
|
8062
8062
|
ic.setOptionCls.setOption('surface', 'solvent accessible surface with context');
|
|
8063
8063
|
thisClass.setLogCmd('set surface solvent accessible surface with context', true);
|
|
8064
8064
|
});
|
|
8065
8065
|
|
|
8066
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceMolecularContext", "click", function(e) { let ic = me.icn3d;
|
|
8066
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceMolecularContext", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8067
8067
|
ic.bConsiderNeighbors = true;
|
|
8068
8068
|
ic.setOptionCls.setOption('surface', 'molecular surface with context');
|
|
8069
8069
|
thisClass.setLogCmd('set surface molecular surface with context', true);
|
|
8070
8070
|
});
|
|
8071
8071
|
|
|
8072
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceNo", "click", function(e) { let ic = me.icn3d;
|
|
8072
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_surfaceNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8073
8073
|
ic.setOptionCls.setOption('surface', 'nothing');
|
|
8074
8074
|
thisClass.setLogCmd('set surface nothing', true);
|
|
8075
8075
|
});
|
|
8076
8076
|
|
|
8077
|
-
$(document).on("click", "." + me.pre + "mn5_opacity", function(e) { let ic = me.icn3d;
|
|
8077
|
+
$(document).on("click", "." + me.pre + "mn5_opacity", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8078
8078
|
ic.transparentRenderOrder = false;
|
|
8079
8079
|
|
|
8080
8080
|
let value = $(this).attr('v');
|
|
@@ -8082,7 +8082,7 @@ class ClickMenu {
|
|
|
8082
8082
|
thisClass.setLogCmd('set surface opacity ' + value, true);
|
|
8083
8083
|
});
|
|
8084
8084
|
|
|
8085
|
-
$(document).on("click", "." + me.pre + "mn5_opacityslow", function(e) { let ic = me.icn3d;
|
|
8085
|
+
$(document).on("click", "." + me.pre + "mn5_opacityslow", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8086
8086
|
ic.transparentRenderOrder = true;
|
|
8087
8087
|
|
|
8088
8088
|
let value = $(this).attr('v');
|
|
@@ -8090,42 +8090,42 @@ class ClickMenu {
|
|
|
8090
8090
|
thisClass.setLogCmd('set surface2 opacity ' + value, true);
|
|
8091
8091
|
});
|
|
8092
8092
|
|
|
8093
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_wireframeYes", "click", function(e) { let ic = me.icn3d;
|
|
8093
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_wireframeYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8094
8094
|
ic.setOptionCls.setOption('wireframe', 'yes');
|
|
8095
8095
|
thisClass.setLogCmd('set surface wireframe on', true);
|
|
8096
8096
|
});
|
|
8097
8097
|
|
|
8098
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_wireframeNo", "click", function(e) { let ic = me.icn3d;
|
|
8098
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_wireframeNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8099
8099
|
ic.setOptionCls.setOption('wireframe', 'no');
|
|
8100
8100
|
thisClass.setLogCmd('set surface wireframe off', true);
|
|
8101
8101
|
});
|
|
8102
8102
|
|
|
8103
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_elecmap2fofc", "click", function(e) { me.icn3d;
|
|
8103
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_elecmap2fofc", "click", function(e) { me.icn3d; e.preventDefault();
|
|
8104
8104
|
me.htmlCls.dialogCls.openDlg('dl_elecmap2fofc', '2Fo-Fc Electron Density Map');
|
|
8105
8105
|
});
|
|
8106
8106
|
|
|
8107
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_elecmapfofc", "click", function(e) { me.icn3d;
|
|
8107
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_elecmapfofc", "click", function(e) { me.icn3d; e.preventDefault();
|
|
8108
8108
|
me.htmlCls.dialogCls.openDlg('dl_elecmapfofc', 'Fo-Fc Electron Density Map');
|
|
8109
8109
|
});
|
|
8110
8110
|
|
|
8111
|
-
me.myEventCls.onIds(["#" + me.pre + "mn5_elecmapNo", "#" + me.pre + "elecmapNo2", "#" + me.pre + "elecmapNo3", "#" + me.pre + "elecmapNo4", "#" + me.pre + "elecmapNo5"], "click", function(e) { let ic = me.icn3d;
|
|
8111
|
+
me.myEventCls.onIds(["#" + me.pre + "mn5_elecmapNo", "#" + me.pre + "elecmapNo2", "#" + me.pre + "elecmapNo3", "#" + me.pre + "elecmapNo4", "#" + me.pre + "elecmapNo5"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8112
8112
|
ic.setOptionCls.setOption('map', 'nothing');
|
|
8113
8113
|
thisClass.setLogCmd('setoption map nothing', true);
|
|
8114
8114
|
});
|
|
8115
8115
|
|
|
8116
|
-
me.myEventCls.onIds(["#" + me.pre + "delphimapNo", "#" + me.pre + "phimapNo", "#" + me.pre + "phiurlmapNo", "#" + me.pre + "mn1_phimapNo"], "click", function(e) { let ic = me.icn3d;
|
|
8116
|
+
me.myEventCls.onIds(["#" + me.pre + "delphimapNo", "#" + me.pre + "phimapNo", "#" + me.pre + "phiurlmapNo", "#" + me.pre + "mn1_phimapNo"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8117
8117
|
ic.setOptionCls.setOption('phimap', 'nothing');
|
|
8118
8118
|
thisClass.setLogCmd('setoption phimap nothing', true);
|
|
8119
8119
|
});
|
|
8120
8120
|
|
|
8121
|
-
me.myEventCls.onIds(["#" + me.pre + "delphimapNo2", "#" + me.pre + "phimapNo2", "#" + me.pre + "phiurlmapNo2"], "click", function(e) { let ic = me.icn3d;
|
|
8121
|
+
me.myEventCls.onIds(["#" + me.pre + "delphimapNo2", "#" + me.pre + "phimapNo2", "#" + me.pre + "phiurlmapNo2"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8122
8122
|
//ic.setOptionCls.setOption('surface', 'nothing');
|
|
8123
8123
|
//thisClass.setLogCmd('set surface nothing', true);
|
|
8124
8124
|
ic.setOptionCls.setOption('phisurface', 'nothing');
|
|
8125
8125
|
thisClass.setLogCmd('setoption phisurface nothing', true);
|
|
8126
8126
|
});
|
|
8127
8127
|
|
|
8128
|
-
me.myEventCls.onIds("#" + me.pre + "applymap2fofc", "click", function(e) { let ic = me.icn3d;
|
|
8128
|
+
me.myEventCls.onIds("#" + me.pre + "applymap2fofc", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8129
8129
|
|
|
8130
8130
|
//if(!me.cfg.notebook) dialog.dialog( "close" );
|
|
8131
8131
|
let sigma2fofc = parseFloat($("#" + me.pre + "sigma2fofc" ).val());
|
|
@@ -8135,7 +8135,7 @@ class ClickMenu {
|
|
|
8135
8135
|
thisClass.setLogCmd('set map 2fofc sigma ' + sigma2fofc, true);
|
|
8136
8136
|
});
|
|
8137
8137
|
|
|
8138
|
-
me.myEventCls.onIds("#" + me.pre + "applymapfofc", "click", function(e) { let ic = me.icn3d;
|
|
8138
|
+
me.myEventCls.onIds("#" + me.pre + "applymapfofc", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8139
8139
|
|
|
8140
8140
|
//if(!me.cfg.notebook) dialog.dialog( "close" );
|
|
8141
8141
|
let sigmafofc = parseFloat($("#" + me.pre + "sigmafofc" ).val());
|
|
@@ -8145,27 +8145,27 @@ class ClickMenu {
|
|
|
8145
8145
|
thisClass.setLogCmd('set map fofc sigma ' + sigmafofc, true);
|
|
8146
8146
|
});
|
|
8147
8147
|
|
|
8148
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_mapwireframeYes", "click", function(e) { let ic = me.icn3d;
|
|
8148
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_mapwireframeYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8149
8149
|
//ic.dsn6ParserCls.dsn6Parser(ic.inputid);
|
|
8150
8150
|
ic.setOptionCls.setOption('mapwireframe', 'yes');
|
|
8151
8151
|
thisClass.setLogCmd('set map wireframe on', true);
|
|
8152
8152
|
});
|
|
8153
8153
|
|
|
8154
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_mapwireframeNo", "click", function(e) { let ic = me.icn3d;
|
|
8154
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_mapwireframeNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8155
8155
|
ic.setOptionCls.setOption('mapwireframe', 'no');
|
|
8156
8156
|
thisClass.setLogCmd('set map wireframe off', true);
|
|
8157
8157
|
});
|
|
8158
8158
|
|
|
8159
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_emmap", "click", function(e) { me.icn3d;
|
|
8159
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_emmap", "click", function(e) { me.icn3d; e.preventDefault();
|
|
8160
8160
|
me.htmlCls.dialogCls.openDlg('dl_emmap', 'EM Density Map');
|
|
8161
8161
|
});
|
|
8162
8162
|
|
|
8163
|
-
me.myEventCls.onIds(["#" + me.pre + "mn5_emmapNo", "#" + me.pre + "emmapNo2"], "click", function(e) { let ic = me.icn3d;
|
|
8163
|
+
me.myEventCls.onIds(["#" + me.pre + "mn5_emmapNo", "#" + me.pre + "emmapNo2"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8164
8164
|
ic.setOptionCls.setOption('emmap', 'nothing');
|
|
8165
8165
|
thisClass.setLogCmd('setoption emmap nothing', true);
|
|
8166
8166
|
});
|
|
8167
8167
|
|
|
8168
|
-
me.myEventCls.onIds("#" + me.pre + "applyemmap", "click", function(e) { let ic = me.icn3d;
|
|
8168
|
+
me.myEventCls.onIds("#" + me.pre + "applyemmap", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8169
8169
|
|
|
8170
8170
|
//if(!me.cfg.notebook) dialog.dialog( "close" );
|
|
8171
8171
|
let empercentage = parseFloat($("#" + me.pre + "empercentage" ).val());
|
|
@@ -8176,13 +8176,13 @@ class ClickMenu {
|
|
|
8176
8176
|
thisClass.setLogCmd('set emmap percentage ' + empercentage, true);
|
|
8177
8177
|
});
|
|
8178
8178
|
|
|
8179
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_emmapwireframeYes", "click", function(e) { let ic = me.icn3d;
|
|
8179
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_emmapwireframeYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8180
8180
|
//ic.dsn6ParserCls.dsn6Parser(ic.inputid);
|
|
8181
8181
|
ic.setOptionCls.setOption('emmapwireframe', 'yes');
|
|
8182
8182
|
thisClass.setLogCmd('set emmap wireframe on', true);
|
|
8183
8183
|
});
|
|
8184
8184
|
|
|
8185
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_emmapwireframeNo", "click", function(e) { let ic = me.icn3d;
|
|
8185
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_emmapwireframeNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8186
8186
|
ic.setOptionCls.setOption('emmapwireframe', 'no');
|
|
8187
8187
|
thisClass.setLogCmd('set emmap wireframe off', true);
|
|
8188
8188
|
});
|
|
@@ -8194,19 +8194,19 @@ class ClickMenu {
|
|
|
8194
8194
|
|
|
8195
8195
|
let thisClass = this;
|
|
8196
8196
|
// mn 6
|
|
8197
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_assemblyYes", "click", function(e) { let ic = me.icn3d;
|
|
8197
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_assemblyYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8198
8198
|
ic.bAssembly = true;
|
|
8199
8199
|
thisClass.setLogCmd('set assembly on', true);
|
|
8200
8200
|
ic.drawCls.draw();
|
|
8201
8201
|
});
|
|
8202
8202
|
|
|
8203
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_assemblyNo", "click", function(e) { let ic = me.icn3d;
|
|
8203
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_assemblyNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8204
8204
|
ic.bAssembly = false;
|
|
8205
8205
|
thisClass.setLogCmd('set assembly off', true);
|
|
8206
8206
|
ic.drawCls.draw();
|
|
8207
8207
|
});
|
|
8208
8208
|
|
|
8209
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_igrefYes", "click", async function(e) { let ic = me.icn3d;
|
|
8209
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_igrefYes", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8210
8210
|
thisClass.setLogCmd('ig refnum on', true);
|
|
8211
8211
|
await ic.refnumCls.showIgRefNum();
|
|
8212
8212
|
|
|
@@ -8220,7 +8220,7 @@ class ClickMenu {
|
|
|
8220
8220
|
}
|
|
8221
8221
|
});
|
|
8222
8222
|
|
|
8223
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_igrefNo", "click", async function(e) { let ic = me.icn3d;
|
|
8223
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_igrefNo", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8224
8224
|
thisClass.setLogCmd('ig refnum off', true);
|
|
8225
8225
|
await ic.refnumCls.hideIgRefNum();
|
|
8226
8226
|
|
|
@@ -8233,14 +8233,14 @@ class ClickMenu {
|
|
|
8233
8233
|
});
|
|
8234
8234
|
|
|
8235
8235
|
|
|
8236
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelAtoms", "click", function(e) { let ic = me.icn3d;
|
|
8236
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelAtoms", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8237
8237
|
ic.residueLabelsCls.addAtomLabels(ic.hAtoms);
|
|
8238
8238
|
ic.selectionCls.saveSelectionIfSelected();
|
|
8239
8239
|
thisClass.setLogCmd('add atom labels', true);
|
|
8240
8240
|
ic.drawCls.draw();
|
|
8241
8241
|
});
|
|
8242
8242
|
|
|
8243
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelElements", "click", function(e) { let ic = me.icn3d;
|
|
8243
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelElements", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8244
8244
|
ic.residueLabelsCls.addAtomLabels(ic.hAtoms, true);
|
|
8245
8245
|
ic.selectionCls.saveSelectionIfSelected();
|
|
8246
8246
|
thisClass.setLogCmd('add element labels', true);
|
|
@@ -8248,35 +8248,35 @@ class ClickMenu {
|
|
|
8248
8248
|
});
|
|
8249
8249
|
|
|
8250
8250
|
|
|
8251
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelResidues", "click", function(e) { let ic = me.icn3d;
|
|
8251
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelResidues", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8252
8252
|
ic.residueLabelsCls.addResidueLabels(ic.hAtoms);
|
|
8253
8253
|
ic.selectionCls.saveSelectionIfSelected();
|
|
8254
8254
|
thisClass.setLogCmd('add residue labels', true);
|
|
8255
8255
|
ic.drawCls.draw();
|
|
8256
8256
|
});
|
|
8257
8257
|
|
|
8258
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelResnum", "click", function(e) { let ic = me.icn3d;
|
|
8258
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelResnum", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8259
8259
|
ic.residueLabelsCls.addResidueLabels(ic.hAtoms, undefined, undefined, true);
|
|
8260
8260
|
ic.selectionCls.saveSelectionIfSelected();
|
|
8261
8261
|
thisClass.setLogCmd('add residue number labels', true);
|
|
8262
8262
|
ic.drawCls.draw();
|
|
8263
8263
|
});
|
|
8264
8264
|
|
|
8265
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelChains", "click", function(e) { let ic = me.icn3d;
|
|
8265
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelChains", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8266
8266
|
ic.analysisCls.addChainLabels(ic.hAtoms);
|
|
8267
8267
|
ic.selectionCls.saveSelectionIfSelected();
|
|
8268
8268
|
thisClass.setLogCmd('add chain labels', true);
|
|
8269
8269
|
ic.drawCls.draw();
|
|
8270
8270
|
});
|
|
8271
8271
|
|
|
8272
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelTermini", "click", function(e) { let ic = me.icn3d;
|
|
8272
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelTermini", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8273
8273
|
ic.analysisCls.addTerminiLabels(ic.hAtoms);
|
|
8274
8274
|
ic.selectionCls.saveSelectionIfSelected();
|
|
8275
8275
|
thisClass.setLogCmd('add terminal labels', true);
|
|
8276
8276
|
ic.drawCls.draw();
|
|
8277
8277
|
});
|
|
8278
8278
|
|
|
8279
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelYes", "click", function(e) { let ic = me.icn3d;
|
|
8279
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8280
8280
|
me.htmlCls.dialogCls.openDlg('dl_addlabel', 'Add custom labels by selection');
|
|
8281
8281
|
ic.pk = 1;
|
|
8282
8282
|
ic.opts['pk'] = 'atom';
|
|
@@ -8284,19 +8284,19 @@ class ClickMenu {
|
|
|
8284
8284
|
ic.pAtomNum = 0;
|
|
8285
8285
|
});
|
|
8286
8286
|
|
|
8287
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelSelection", "click", function(e) { me.icn3d;
|
|
8287
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_addlabelSelection", "click", function(e) { me.icn3d; e.preventDefault();
|
|
8288
8288
|
me.htmlCls.dialogCls.openDlg('dl_addlabelselection', 'Add custom labels by the selected');
|
|
8289
8289
|
});
|
|
8290
8290
|
|
|
8291
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_labelColor", "click", function(e) { me.icn3d;
|
|
8291
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_labelColor", "click", function(e) { me.icn3d; e.preventDefault();
|
|
8292
8292
|
me.htmlCls.dialogCls.openDlg('dl_labelColor', 'Change color for all labels');
|
|
8293
8293
|
});
|
|
8294
8294
|
|
|
8295
|
-
me.myEventCls.onIds(["#" + me.pre + "mn2_saveselection","#" + me.pre + "tool_saveselection"], "click", function(e) { me.icn3d;
|
|
8295
|
+
me.myEventCls.onIds(["#" + me.pre + "mn2_saveselection","#" + me.pre + "tool_saveselection"], "click", function(e) { me.icn3d; e.preventDefault();
|
|
8296
8296
|
me.htmlCls.dialogCls.openDlg('dl_saveselection', 'Save the selected');
|
|
8297
8297
|
});
|
|
8298
8298
|
|
|
8299
|
-
me.myEventCls.onIds(["#" + me.pre + "mn6_addlabelNo", "#" + me.pre + "removeLabels"], "click", function(e) { let ic = me.icn3d;
|
|
8299
|
+
me.myEventCls.onIds(["#" + me.pre + "mn6_addlabelNo", "#" + me.pre + "removeLabels"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8300
8300
|
ic.labelcolor = undefined;
|
|
8301
8301
|
ic.pickpair = false;
|
|
8302
8302
|
//ic.labels['residue'] = [];
|
|
@@ -8311,14 +8311,14 @@ class ClickMenu {
|
|
|
8311
8311
|
ic.drawCls.draw();
|
|
8312
8312
|
});
|
|
8313
8313
|
|
|
8314
|
-
$(document).on("click", "." + me.pre + "mn6_labelscale", function(e) { let ic = me.icn3d;
|
|
8314
|
+
$(document).on("click", "." + me.pre + "mn6_labelscale", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8315
8315
|
let value = $(this).attr('v');
|
|
8316
8316
|
ic.labelScale = value;
|
|
8317
8317
|
ic.drawCls.draw();
|
|
8318
8318
|
thisClass.setLogCmd('set label scale ' + value, true);
|
|
8319
8319
|
});
|
|
8320
8320
|
|
|
8321
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_distanceYes", "click", function(e) { let ic = me.icn3d;
|
|
8321
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_distanceYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8322
8322
|
me.htmlCls.dialogCls.openDlg('dl_distance', 'Measure the distance of atoms');
|
|
8323
8323
|
ic.pk = 1;
|
|
8324
8324
|
ic.opts['pk'] = 'atom';
|
|
@@ -8328,7 +8328,7 @@ class ClickMenu {
|
|
|
8328
8328
|
});
|
|
8329
8329
|
|
|
8330
8330
|
|
|
8331
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_distTwoSets", "click", function(e) { let ic = me.icn3d;
|
|
8331
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_distTwoSets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8332
8332
|
me.htmlCls.dialogCls.openDlg('dl_disttwosets', 'Measure the distance between two sets');
|
|
8333
8333
|
|
|
8334
8334
|
thisClass.setSetsMenus('atomsCustomDist');
|
|
@@ -8336,7 +8336,7 @@ class ClickMenu {
|
|
|
8336
8336
|
ic.bMeasureDistance = true;
|
|
8337
8337
|
});
|
|
8338
8338
|
|
|
8339
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_distManySets", "click", function(e) { let ic = me.icn3d;
|
|
8339
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_distManySets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8340
8340
|
me.htmlCls.dialogCls.openDlg('dl_distmanysets', 'Measure the pairwise distance among many sets');
|
|
8341
8341
|
|
|
8342
8342
|
thisClass.setSetsMenus('atomsCustomDistTable');
|
|
@@ -8344,7 +8344,7 @@ class ClickMenu {
|
|
|
8344
8344
|
ic.bMeasureDistance = true;
|
|
8345
8345
|
});
|
|
8346
8346
|
|
|
8347
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_distanceNo", "click", function(e) { let ic = me.icn3d;
|
|
8347
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_distanceNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8348
8348
|
ic.pickpair = false;
|
|
8349
8349
|
let select = "set lines off";
|
|
8350
8350
|
thisClass.setLogCmd(select, true);
|
|
@@ -8355,7 +8355,7 @@ class ClickMenu {
|
|
|
8355
8355
|
ic.drawCls.draw();
|
|
8356
8356
|
});
|
|
8357
8357
|
|
|
8358
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_cartoonshape", "click", function(e) { let ic = me.icn3d;
|
|
8358
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_cartoonshape", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8359
8359
|
me.htmlCls.dialogCls.openDlg('dl_cartoonshape', 'Draw cartoon for a set');
|
|
8360
8360
|
|
|
8361
8361
|
let bOneset = true;
|
|
@@ -8364,7 +8364,7 @@ class ClickMenu {
|
|
|
8364
8364
|
ic.bCartoonshape = true;
|
|
8365
8365
|
});
|
|
8366
8366
|
|
|
8367
|
-
me.myEventCls.onIds("#" + me.pre + "mn5_linebtwsets", "click", function(e) { let ic = me.icn3d;
|
|
8367
|
+
me.myEventCls.onIds("#" + me.pre + "mn5_linebtwsets", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8368
8368
|
me.htmlCls.dialogCls.openDlg('dl_linebtwsets', 'Draw a line between two sets');
|
|
8369
8369
|
|
|
8370
8370
|
thisClass.setSetsMenus('linebtwsets');
|
|
@@ -8373,21 +8373,21 @@ class ClickMenu {
|
|
|
8373
8373
|
});
|
|
8374
8374
|
|
|
8375
8375
|
|
|
8376
|
-
me.myEventCls.onIds(["#" + me.pre + "mn2_selectedcenter", "#" + me.pre + "zoomin_selection", "#" + me.pre + "tool_selectedcenter"], "click", function(e) { let ic = me.icn3d;
|
|
8376
|
+
me.myEventCls.onIds(["#" + me.pre + "mn2_selectedcenter", "#" + me.pre + "zoomin_selection", "#" + me.pre + "tool_selectedcenter"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8377
8377
|
//thisClass.setLogCmd('zoom selection', true);
|
|
8378
8378
|
ic.transformCls.zoominSelection();
|
|
8379
8379
|
ic.drawCls.draw();
|
|
8380
8380
|
thisClass.setLogCmd('zoom selection', true);
|
|
8381
8381
|
});
|
|
8382
8382
|
|
|
8383
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_center", "click", function(e) { let ic = me.icn3d;
|
|
8383
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_center", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8384
8384
|
//thisClass.setLogCmd('center selection', true);
|
|
8385
8385
|
ic.applyCenterCls.centerSelection();
|
|
8386
8386
|
ic.drawCls.draw();
|
|
8387
8387
|
thisClass.setLogCmd('center selection', true);
|
|
8388
8388
|
});
|
|
8389
8389
|
|
|
8390
|
-
me.myEventCls.onIds(["#" + me.pre + "mn6_resetOrientation", "#" + me.pre + "resetOrientation", "#" + me.pre + "tool_resetOrientation"], "click", function(e) { let ic = me.icn3d;
|
|
8390
|
+
me.myEventCls.onIds(["#" + me.pre + "mn6_resetOrientation", "#" + me.pre + "resetOrientation", "#" + me.pre + "tool_resetOrientation"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8391
8391
|
//thisClass.setLogCmd('reset orientation', true);
|
|
8392
8392
|
ic.transformCls.resetOrientation();
|
|
8393
8393
|
//ic.setColorCls.applyOriginalColor();
|
|
@@ -8395,17 +8395,17 @@ class ClickMenu {
|
|
|
8395
8395
|
thisClass.setLogCmd('reset orientation', true);
|
|
8396
8396
|
});
|
|
8397
8397
|
|
|
8398
|
-
me.myEventCls.onIds(["#" + me.pre + "mn6_chemicalbindingshow", "#" + me.pre + "chemicalbindingshow"], "click", function(e) { let ic = me.icn3d;
|
|
8398
|
+
me.myEventCls.onIds(["#" + me.pre + "mn6_chemicalbindingshow", "#" + me.pre + "chemicalbindingshow"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8399
8399
|
ic.setOptionCls.setOption('chemicalbinding', 'show');
|
|
8400
8400
|
thisClass.setLogCmd('set chemicalbinding show', true);
|
|
8401
8401
|
});
|
|
8402
8402
|
|
|
8403
|
-
me.myEventCls.onIds(["#" + me.pre + "mn6_chemicalbindinghide", "#" + me.pre + "chemicalbindinghide"], "click", function(e) { let ic = me.icn3d;
|
|
8403
|
+
me.myEventCls.onIds(["#" + me.pre + "mn6_chemicalbindinghide", "#" + me.pre + "chemicalbindinghide"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8404
8404
|
ic.setOptionCls.setOption('chemicalbinding', 'hide');
|
|
8405
8405
|
thisClass.setLogCmd('set chemicalbinding hide', true);
|
|
8406
8406
|
});
|
|
8407
8407
|
|
|
8408
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_sidebyside", "click", function(e) { let ic = me.icn3d;
|
|
8408
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_sidebyside", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8409
8409
|
if(ic.bInputfile) {
|
|
8410
8410
|
alert("Side-by-Side does NOT work when the input is from a local file.");
|
|
8411
8411
|
return;
|
|
@@ -8424,7 +8424,7 @@ class ClickMenu {
|
|
|
8424
8424
|
});
|
|
8425
8425
|
|
|
8426
8426
|
|
|
8427
|
-
$(document).on("click", "." + me.pre + "mn6_rotate", function(e) { let ic = me.icn3d;
|
|
8427
|
+
$(document).on("click", "." + me.pre + "mn6_rotate", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8428
8428
|
let value = $(this).attr('v').toLowerCase();
|
|
8429
8429
|
let direction = value.split(' ')[1];
|
|
8430
8430
|
|
|
@@ -8436,7 +8436,7 @@ class ClickMenu {
|
|
|
8436
8436
|
ic.resizeCanvasCls.rotStruc(direction);
|
|
8437
8437
|
});
|
|
8438
8438
|
|
|
8439
|
-
$(document).on("click", "." + me.pre + "mn6_rotate90", function(e) { let ic = me.icn3d;
|
|
8439
|
+
$(document).on("click", "." + me.pre + "mn6_rotate90", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8440
8440
|
let value = $(this).attr('v').toLowerCase();
|
|
8441
8441
|
let direction = value.split('-')[0];
|
|
8442
8442
|
|
|
@@ -8455,21 +8455,21 @@ class ClickMenu {
|
|
|
8455
8455
|
ic.transformCls.setRotation(axis, angle);
|
|
8456
8456
|
});
|
|
8457
8457
|
|
|
8458
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_cameraPers", "click", function(e) { let ic = me.icn3d;
|
|
8458
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_cameraPers", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8459
8459
|
ic.setOptionCls.setOption('camera', 'perspective');
|
|
8460
8460
|
thisClass.setLogCmd('set camera perspective', true);
|
|
8461
8461
|
});
|
|
8462
8462
|
|
|
8463
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_cameraOrth", "click", function(e) { let ic = me.icn3d;
|
|
8463
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_cameraOrth", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8464
8464
|
ic.setOptionCls.setOption('camera', 'orthographic');
|
|
8465
8465
|
thisClass.setLogCmd('set camera orthographic', true);
|
|
8466
8466
|
});
|
|
8467
8467
|
|
|
8468
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_bkgdBlack", "click", function(e) { let ic = me.icn3d;
|
|
8468
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_bkgdBlack", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8469
8469
|
ic.setStyleCls.setBackground('black');
|
|
8470
8470
|
});
|
|
8471
8471
|
|
|
8472
|
-
me.myEventCls.onIds("#" + me.pre + "tool_bkgd", "click", function(e) { let ic = me.icn3d;
|
|
8472
|
+
me.myEventCls.onIds("#" + me.pre + "tool_bkgd", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8473
8473
|
if(ic.opts['background'] == 'black') {
|
|
8474
8474
|
ic.setStyleCls.setBackground('white');
|
|
8475
8475
|
}
|
|
@@ -8478,19 +8478,19 @@ class ClickMenu {
|
|
|
8478
8478
|
}
|
|
8479
8479
|
});
|
|
8480
8480
|
|
|
8481
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_bkgdGrey", "click", function(e) { let ic = me.icn3d;
|
|
8481
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_bkgdGrey", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8482
8482
|
ic.setStyleCls.setBackground('grey');
|
|
8483
8483
|
});
|
|
8484
8484
|
|
|
8485
|
-
me.myEventCls.onIds(["#" + me.pre + "mn6_bkgdWhite", "#" + me.pre + "tool_bkgdWhite"], "click", function(e) { let ic = me.icn3d;
|
|
8485
|
+
me.myEventCls.onIds(["#" + me.pre + "mn6_bkgdWhite", "#" + me.pre + "tool_bkgdWhite"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8486
8486
|
ic.setStyleCls.setBackground('white');
|
|
8487
8487
|
});
|
|
8488
8488
|
|
|
8489
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_bkgdTransparent", "click", function(e) { let ic = me.icn3d;
|
|
8489
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_bkgdTransparent", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8490
8490
|
ic.setStyleCls.setBackground('transparent');
|
|
8491
8491
|
});
|
|
8492
8492
|
|
|
8493
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_showfogYes", "click", function(e) { let ic = me.icn3d;
|
|
8493
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_showfogYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8494
8494
|
//ic.setOptionCls.setOption('fog', 'yes');
|
|
8495
8495
|
ic.opts['fog'] = 'yes';
|
|
8496
8496
|
ic.fogCls.setFog(true);
|
|
@@ -8498,7 +8498,7 @@ class ClickMenu {
|
|
|
8498
8498
|
thisClass.setLogCmd('set fog on', true);
|
|
8499
8499
|
});
|
|
8500
8500
|
|
|
8501
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_showfogNo", "click", function(e) { let ic = me.icn3d;
|
|
8501
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_showfogNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8502
8502
|
//ic.setOptionCls.setOption('fog', 'no');
|
|
8503
8503
|
ic.opts['fog'] = 'no';
|
|
8504
8504
|
ic.fogCls.setFog(true);
|
|
@@ -8506,22 +8506,22 @@ class ClickMenu {
|
|
|
8506
8506
|
thisClass.setLogCmd('set fog off', true);
|
|
8507
8507
|
});
|
|
8508
8508
|
|
|
8509
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_showslabYes", "click", function(e) { let ic = me.icn3d;
|
|
8509
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_showslabYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8510
8510
|
ic.setOptionCls.setOption('slab', 'yes');
|
|
8511
8511
|
thisClass.setLogCmd('set slab on', true);
|
|
8512
8512
|
});
|
|
8513
8513
|
|
|
8514
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_showslabNo", "click", function(e) { let ic = me.icn3d;
|
|
8514
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_showslabNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8515
8515
|
ic.setOptionCls.setOption('slab', 'no');
|
|
8516
8516
|
thisClass.setLogCmd('set slab off', true);
|
|
8517
8517
|
});
|
|
8518
8518
|
|
|
8519
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_showaxisYes", "click", function(e) { let ic = me.icn3d;
|
|
8519
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_showaxisYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8520
8520
|
ic.setOptionCls.setOption('axis', 'yes');
|
|
8521
8521
|
thisClass.setLogCmd('set axis on', true);
|
|
8522
8522
|
});
|
|
8523
8523
|
|
|
8524
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_showaxisSel", "click", function(e) { let ic = me.icn3d;
|
|
8524
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_showaxisSel", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8525
8525
|
ic.pc1 = true;
|
|
8526
8526
|
|
|
8527
8527
|
ic.axesCls.setPc1Axes();
|
|
@@ -8529,7 +8529,7 @@ class ClickMenu {
|
|
|
8529
8529
|
});
|
|
8530
8530
|
|
|
8531
8531
|
|
|
8532
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_showaxisNo", "click", function(e) { let ic = me.icn3d;
|
|
8532
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_showaxisNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8533
8533
|
ic.pc1 = false;
|
|
8534
8534
|
ic.axes = [];
|
|
8535
8535
|
|
|
@@ -8538,37 +8538,37 @@ class ClickMenu {
|
|
|
8538
8538
|
thisClass.setLogCmd('set axis off', true);
|
|
8539
8539
|
});
|
|
8540
8540
|
|
|
8541
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_symmetry", "click", async function(e) { let ic = me.icn3d;
|
|
8541
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_symmetry", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8542
8542
|
ic.bAxisOnly = false;
|
|
8543
8543
|
await ic.symdCls.retrieveSymmetry(Object.keys(ic.structures)[0]);
|
|
8544
8544
|
//me.htmlCls.dialogCls.openDlg('dl_symmetry', 'Symmetry');
|
|
8545
8545
|
});
|
|
8546
8546
|
|
|
8547
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_symd", "click", async function(e) { let ic = me.icn3d;
|
|
8547
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_symd", "click", async function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8548
8548
|
ic.bAxisOnly = false;
|
|
8549
8549
|
await ic.symdCls.retrieveSymd();
|
|
8550
8550
|
ic.bSymd = true;
|
|
8551
8551
|
|
|
8552
8552
|
thisClass.setLogCmd('symd symmetry', true);
|
|
8553
8553
|
});
|
|
8554
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_clear_sym", "click", function(e) { let ic = me.icn3d;
|
|
8554
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_clear_sym", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8555
8555
|
ic.symdArray = [];
|
|
8556
8556
|
ic.drawCls.draw();
|
|
8557
8557
|
thisClass.setLogCmd('clear symd symmetry', true);
|
|
8558
8558
|
});
|
|
8559
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_axes_only", "click", function(e) { let ic = me.icn3d;
|
|
8559
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_axes_only", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8560
8560
|
ic.bAxisOnly = true;
|
|
8561
8561
|
ic.drawCls.draw();
|
|
8562
8562
|
thisClass.setLogCmd('show axis', true);
|
|
8563
8563
|
});
|
|
8564
8564
|
|
|
8565
8565
|
|
|
8566
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_area", "click", function(e) { let ic = me.icn3d;
|
|
8566
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_area", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8567
8567
|
ic.analysisCls.calculateArea();
|
|
8568
8568
|
thisClass.setLogCmd('area', true);
|
|
8569
8569
|
});
|
|
8570
8570
|
|
|
8571
|
-
me.myEventCls.onIds("#" + me.pre + "applysymmetry", "click", function(e) { let ic = me.icn3d;
|
|
8571
|
+
me.myEventCls.onIds("#" + me.pre + "applysymmetry", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8572
8572
|
ic.bAxisOnly = false;
|
|
8573
8573
|
|
|
8574
8574
|
let title = $("#" + me.pre + "selectSymmetry" ).val();
|
|
@@ -8578,14 +8578,14 @@ class ClickMenu {
|
|
|
8578
8578
|
ic.drawCls.draw();
|
|
8579
8579
|
thisClass.setLogCmd('symmetry ' + title, true);
|
|
8580
8580
|
});
|
|
8581
|
-
me.myEventCls.onIds("#" + me.pre + "clearsymmetry", "click", function(e) { let ic = me.icn3d;
|
|
8581
|
+
me.myEventCls.onIds("#" + me.pre + "clearsymmetry", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8582
8582
|
let title = 'none';
|
|
8583
8583
|
ic.symmetrytitle = undefined;
|
|
8584
8584
|
ic.drawCls.draw();
|
|
8585
8585
|
thisClass.setLogCmd('symmetry ' + title, true);
|
|
8586
8586
|
});
|
|
8587
8587
|
|
|
8588
|
-
me.myEventCls.onIds(["#" + me.pre + "mn6_hbondsYes", "#" + me.pre + "hbondsYes"], "click", function(e) { let ic = me.icn3d;
|
|
8588
|
+
me.myEventCls.onIds(["#" + me.pre + "mn6_hbondsYes", "#" + me.pre + "hbondsYes"], "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8589
8589
|
thisClass.SetChainsAdvancedMenu();
|
|
8590
8590
|
|
|
8591
8591
|
let definedAtomsHtml = ic.definedSetsCls.setAtomMenu(['protein']);
|
|
@@ -8602,17 +8602,17 @@ class ClickMenu {
|
|
|
8602
8602
|
$("#" + me.pre + "atomsCustomHbond2").resizable();
|
|
8603
8603
|
});
|
|
8604
8604
|
|
|
8605
|
-
me.myEventCls.onIds(["#" + me.pre + "mn6_contactmap"], "click", function(e) { me.icn3d;
|
|
8605
|
+
me.myEventCls.onIds(["#" + me.pre + "mn6_contactmap"], "click", function(e) { me.icn3d; e.preventDefault();
|
|
8606
8606
|
me.htmlCls.dialogCls.openDlg('dl_contact', 'Set contact map');
|
|
8607
8607
|
});
|
|
8608
8608
|
|
|
8609
8609
|
|
|
8610
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_hbondsNo", "click", function(e) { let ic = me.icn3d;
|
|
8610
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_hbondsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8611
8611
|
ic.showInterCls.hideHbondsContacts();
|
|
8612
8612
|
ic.drawCls.draw();
|
|
8613
8613
|
});
|
|
8614
8614
|
|
|
8615
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerYes", "click", function(e) { let ic = me.icn3d;
|
|
8615
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8616
8616
|
let select = "stabilizer";
|
|
8617
8617
|
ic.threeDPrintCls.addStabilizer();
|
|
8618
8618
|
ic.threeDPrintCls.prepareFor3Dprint();
|
|
@@ -8620,14 +8620,14 @@ class ClickMenu {
|
|
|
8620
8620
|
thisClass.setLogCmd(select, true);
|
|
8621
8621
|
});
|
|
8622
8622
|
|
|
8623
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerNo", "click", function(e) { let ic = me.icn3d;
|
|
8623
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8624
8624
|
let select = "set stabilizer off";
|
|
8625
8625
|
thisClass.setLogCmd(select, true);
|
|
8626
8626
|
ic.threeDPrintCls.hideStabilizer();
|
|
8627
8627
|
ic.drawCls.draw();
|
|
8628
8628
|
});
|
|
8629
8629
|
|
|
8630
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerOne", "click", function(e) { let ic = me.icn3d;
|
|
8630
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerOne", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8631
8631
|
me.htmlCls.dialogCls.openDlg('dl_stabilizer', 'Add One Stabilizer');
|
|
8632
8632
|
ic.pk = 1;
|
|
8633
8633
|
ic.opts['pk'] = 'atom';
|
|
@@ -8635,7 +8635,7 @@ class ClickMenu {
|
|
|
8635
8635
|
ic.pAtomNum = 0;
|
|
8636
8636
|
});
|
|
8637
8637
|
|
|
8638
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerRmOne", "click", function(e) { let ic = me.icn3d;
|
|
8638
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_stabilizerRmOne", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8639
8639
|
me.htmlCls.dialogCls.openDlg('dl_stabilizer_rm', 'Remove One Stabilizer');
|
|
8640
8640
|
ic.pk = 1;
|
|
8641
8641
|
ic.opts['pk'] = 'atom';
|
|
@@ -8643,27 +8643,27 @@ class ClickMenu {
|
|
|
8643
8643
|
ic.pAtomNum = 0;
|
|
8644
8644
|
});
|
|
8645
8645
|
|
|
8646
|
-
me.myEventCls.onIds("#" + me.pre + "mn1_thicknessSet", "click", function(e) { me.icn3d;
|
|
8646
|
+
me.myEventCls.onIds("#" + me.pre + "mn1_thicknessSet", "click", function(e) { me.icn3d; e.preventDefault();
|
|
8647
8647
|
me.htmlCls.dialogCls.openDlg('dl_thickness', 'Set Thickness for 3D Printing');
|
|
8648
8648
|
});
|
|
8649
8649
|
|
|
8650
|
-
me.myEventCls.onIds("#" + me.pre + "mn3_setThickness", "click", function(e) { me.icn3d;
|
|
8650
|
+
me.myEventCls.onIds("#" + me.pre + "mn3_setThickness", "click", function(e) { me.icn3d; e.preventDefault();
|
|
8651
8651
|
me.htmlCls.dialogCls.openDlg('dl_thickness2', 'Style Preferences');
|
|
8652
8652
|
});
|
|
8653
8653
|
|
|
8654
8654
|
|
|
8655
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsYes", "click", function(e) { let ic = me.icn3d;
|
|
8655
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8656
8656
|
let select = "disulfide bonds";
|
|
8657
8657
|
thisClass.setLogCmd(select, true);
|
|
8658
8658
|
ic.showInterCls.showSsbonds();
|
|
8659
8659
|
});
|
|
8660
8660
|
|
|
8661
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsExport", "click", function(e) { let ic = me.icn3d;
|
|
8661
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsExport", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8662
8662
|
ic.viewInterPairsCls.exportSsbondPairs();
|
|
8663
8663
|
thisClass.setLogCmd("export disulfide bond pairs", false);
|
|
8664
8664
|
});
|
|
8665
8665
|
|
|
8666
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsNo", "click", function(e) { let ic = me.icn3d;
|
|
8666
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_ssbondsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8667
8667
|
ic.opts["ssbonds"] = "no";
|
|
8668
8668
|
let select = "set disulfide bonds off";
|
|
8669
8669
|
thisClass.setLogCmd(select, true);
|
|
@@ -8671,7 +8671,7 @@ class ClickMenu {
|
|
|
8671
8671
|
ic.setOptionCls.setStyle('sidec', 'nothing');
|
|
8672
8672
|
});
|
|
8673
8673
|
|
|
8674
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_clbondsYes", "click", function(e) { let ic = me.icn3d;
|
|
8674
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_clbondsYes", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8675
8675
|
let select = "cross linkage";
|
|
8676
8676
|
thisClass.setLogCmd(select, true);
|
|
8677
8677
|
//ic.bShowCrossResidueBond = true;
|
|
@@ -8679,12 +8679,12 @@ class ClickMenu {
|
|
|
8679
8679
|
ic.showInterCls.showClbonds();
|
|
8680
8680
|
});
|
|
8681
8681
|
|
|
8682
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_clbondsExport", "click", function(e) { let ic = me.icn3d;
|
|
8682
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_clbondsExport", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8683
8683
|
ic.viewInterPairsCls.exportClbondPairs();
|
|
8684
8684
|
thisClass.setLogCmd("export cross linkage pairs", false);
|
|
8685
8685
|
});
|
|
8686
8686
|
|
|
8687
|
-
me.myEventCls.onIds("#" + me.pre + "mn6_clbondsNo", "click", function(e) { let ic = me.icn3d;
|
|
8687
|
+
me.myEventCls.onIds("#" + me.pre + "mn6_clbondsNo", "click", function(e) { let ic = me.icn3d; e.preventDefault();
|
|
8688
8688
|
ic.opts["clbonds"] = "no";
|
|
8689
8689
|
let select = "set cross linkage off";
|
|
8690
8690
|
thisClass.setLogCmd(select, true);
|
|
@@ -8731,6 +8731,11 @@ class ClickMenu {
|
|
|
8731
8731
|
}
|
|
8732
8732
|
});
|
|
8733
8733
|
});
|
|
8734
|
+
|
|
8735
|
+
me.myEventCls.onIds("#" + me.pre + "jn_copy", "click", function(e) { me.icn3d; e.preventDefault();
|
|
8736
|
+
let text = $("#" + me.pre + "jn_commands").val();
|
|
8737
|
+
navigator.clipboard.writeText(text);
|
|
8738
|
+
});
|
|
8734
8739
|
}
|
|
8735
8740
|
|
|
8736
8741
|
//Show the input command in log. If "bSetCommand" is true, the command will be saved in the state file as well.
|
|
@@ -11190,6 +11195,7 @@ class Dialog {
|
|
|
11190
11195
|
if(id === me.pre + 'dl_selectannotations' || id === me.pre + 'dl_graph' || id === me.pre + 'dl_linegraph' || id === me.pre + 'dl_scatterplot' || id === me.pre + 'dl_contactmap' || id === me.pre + 'dl_alignerrormap' || id === me.pre + 'dl_interactionsorted' || id === me.pre + 'dl_alignment') {
|
|
11191
11196
|
$( "#" + id ).show();
|
|
11192
11197
|
$( "#" + id + "_nb").show();
|
|
11198
|
+
$( "#" + id + "_title").html(title);
|
|
11193
11199
|
|
|
11194
11200
|
height =(me.htmlCls.HEIGHT) * 0.5;
|
|
11195
11201
|
|
|
@@ -11237,6 +11243,7 @@ class Dialog {
|
|
|
11237
11243
|
if(ic.bRender) {
|
|
11238
11244
|
$( "#" + id ).show();
|
|
11239
11245
|
$( "#" + id + "_nb").show();
|
|
11246
|
+
$( "#" + id + "_title").html(title);
|
|
11240
11247
|
}
|
|
11241
11248
|
|
|
11242
11249
|
height = 'auto';
|
|
@@ -11290,7 +11297,7 @@ class SetDialog {
|
|
|
11290
11297
|
addNotebookTitle(id, title, bAddExtraDiv) { let me = this.icn3dui; me.icn3d;
|
|
11291
11298
|
//return '<div id="' + me.pre + id + '_nb" style="display:none; background-color:#1c94c4; width:100%"><span style="color:white; font-weight:bold">' + title + '</span> <span onclick="$(\'#' + me.pre + id + '\').hide(); return false;" class="icn3d-nbclose" title="Close">x</span></div>';
|
|
11292
11299
|
|
|
11293
|
-
let html = '<div id="' + me.pre + id + '_nb" style="display:none; background-color:#5C9CCC; width:100%"><span style="color:white; font-weight:bold">' + title + '</span> <div onclick="$(\'#' + me.pre + id + '\').hide(); return false;" class="icn3d-nbclose ui-icon ui-icon-close" title="Close"></div></div>';
|
|
11300
|
+
let html = '<div id="' + me.pre + id + '_nb" style="display:none; background-color:#5C9CCC; width:100%"><span id="' + me.pre + id + '_title" style="color:white; font-weight:bold">' + title + '</span> <div onclick="$(\'#' + me.pre + id + '\').hide(); return false;" class="icn3d-nbclose ui-icon ui-icon-close" title="Close"></div></div>';
|
|
11294
11301
|
|
|
11295
11302
|
if(bAddExtraDiv) {
|
|
11296
11303
|
html += '<div id="' + me.pre + id + '_html"></div>';
|
|
@@ -12428,10 +12435,24 @@ class SetDialog {
|
|
|
12428
12435
|
|
|
12429
12436
|
html += me.htmlCls.divStr + "dl_copyurl' style='width:520px;' class='" + dialogClass + "'>";
|
|
12430
12437
|
html += this.addNotebookTitle('dl_copyurl', 'Share Link');
|
|
12438
|
+
|
|
12439
|
+
html += "1. <b>URLs Used in Browsers</b><br><br>";
|
|
12440
|
+
|
|
12431
12441
|
html += "Please copy one of the URLs below. They show the same result.<br>(To add a title to share link, click \"Windows > Your Note\" and click \"File > Share Link\" again.)<br><br>";
|
|
12432
12442
|
html += "Original URL with commands: <br><textarea id='" + me.pre + "ori_url' rows='4' style='width:100%'></textarea><br><br>";
|
|
12433
|
-
|
|
12434
|
-
|
|
12443
|
+
if(!me.cfg.notebook) {
|
|
12444
|
+
html += "Lifelong Short URL:(To replace this URL, send a pull request to update share.html at <a href='https://github.com/ncbi/icn3d' target='_blank'>iCn3D GitHub</a>)<br>" + me.htmlCls.inputTextStr + "id='" + me.pre + "short_url' value='' style='width:100%'><br><br>";
|
|
12445
|
+
html += "Lifelong Short URL + Window Title:(To update the window title, click \"Analysis > Your Note/Window Title\".)<br>" + me.htmlCls.inputTextStr + "id='" + me.pre + "short_url_title' value='' style='width:100%'><br><br>";
|
|
12446
|
+
}
|
|
12447
|
+
html += "<br>";
|
|
12448
|
+
|
|
12449
|
+
html += "2. <b>Commands Used in Jupyter Noteboook</b><br><br>";
|
|
12450
|
+
html += "Please copy the following commands into a cell in Jupyter Notebook to show the same result.<br><br>";
|
|
12451
|
+
|
|
12452
|
+
html += '<textarea id="' + me.pre + 'jn_commands" rows="4" style="width:100%"></textarea><br>';
|
|
12453
|
+
|
|
12454
|
+
html += buttonStrTmp + me.pre + 'jn_copy">Copy Commands</button><br>';
|
|
12455
|
+
|
|
12435
12456
|
html += "</div>";
|
|
12436
12457
|
|
|
12437
12458
|
html += me.htmlCls.divStr + "dl_selectannotations' class='" + dialogClass + " icn3d-annotation' style='background-color:white;'>";
|
|
@@ -31874,6 +31895,7 @@ class Impostor {
|
|
|
31874
31895
|
|
|
31875
31896
|
setParametersForShader (opacity) { let ic = this.icn3d, me = ic.icn3dui;
|
|
31876
31897
|
let background = me.parasCls.backgroundColors[ic.opts.background.toLowerCase()];
|
|
31898
|
+
if(!background) background = me.parasCls.thr(0x000000);
|
|
31877
31899
|
|
|
31878
31900
|
let near = 2.5*ic.maxD;
|
|
31879
31901
|
let far = 4*ic.maxD;
|
|
@@ -33060,7 +33082,7 @@ class Alternate {
|
|
|
33060
33082
|
|
|
33061
33083
|
// show membranes
|
|
33062
33084
|
if(ic.bOpm) {
|
|
33063
|
-
//if(window.dialog) window.dialog.dialog( "close" );
|
|
33085
|
+
//if(window.dialog && window.dialog.hasClass('ui-dialog-content')) window.dialog.dialog( "close" );
|
|
33064
33086
|
|
|
33065
33087
|
let html = me.utilsCls.getMemDesc();
|
|
33066
33088
|
$("#" + ic.pre + "dl_rmsd_html").html(html);
|
|
@@ -36278,11 +36300,13 @@ class SetOption {
|
|
|
36278
36300
|
bClose = true;
|
|
36279
36301
|
}
|
|
36280
36302
|
|
|
36281
|
-
|
|
36282
|
-
|
|
36303
|
+
if(html) {
|
|
36304
|
+
$("#" + me.pre + "dl_legend_html").html(html);
|
|
36305
|
+
me.htmlCls.dialogCls.openDlg('dl_legend', 'Color Legend');
|
|
36306
|
+
}
|
|
36283
36307
|
|
|
36284
36308
|
if(bClose) {
|
|
36285
|
-
if(window.dialog) window.dialog.dialog( "close" );
|
|
36309
|
+
if(window.dialog && window.dialog.hasClass('ui-dialog-content')) window.dialog.dialog( "close" );
|
|
36286
36310
|
}
|
|
36287
36311
|
}
|
|
36288
36312
|
|
|
@@ -42688,7 +42712,7 @@ class ShowSeq {
|
|
|
42688
42712
|
let strand2len_start_stop = {};
|
|
42689
42713
|
let prevRefnumStr, prevPostfix, prevRefnum;
|
|
42690
42714
|
|
|
42691
|
-
// sometimes one chain may have several Ig domains,set
|
|
42715
|
+
// sometimes one chain may have several Ig domains,set an index for each IgDomain
|
|
42692
42716
|
let index = 1, prevStrandPostfix = '', bStart = false;
|
|
42693
42717
|
for(let i = 0, il = giSeq.length; i < il; ++i) {
|
|
42694
42718
|
let currResi = ic.ParserUtilsCls.getResi(chnid, i);
|
|
@@ -52602,7 +52626,7 @@ class ParserUtils {
|
|
|
52602
52626
|
me.htmlCls.clickMenuCls.setLogCmd("realignment RMSD: " + rmsd.toPrecision(4), false);
|
|
52603
52627
|
let html = "<br><b>Realignment RMSD</b>: " + rmsd.toPrecision(4) + " Å<br><br>";
|
|
52604
52628
|
if(ic.bAfMem) {
|
|
52605
|
-
//if(window.dialog) window.dialog.dialog( "close" );
|
|
52629
|
+
//if(window.dialog && window.dialog.hasClass('ui-dialog-content')) window.dialog.dialog( "close" );
|
|
52606
52630
|
html += me.utilsCls.getMemDesc();
|
|
52607
52631
|
}
|
|
52608
52632
|
$("#" + ic.pre + "dl_rmsd_html").html(html);
|
|
@@ -62862,7 +62886,8 @@ class Dssp {
|
|
|
62862
62886
|
let startResi = segArray[m];
|
|
62863
62887
|
let endResi = segArray[m+1];
|
|
62864
62888
|
for(let n = parseInt(startResi); n <= parseInt(endResi); ++n) {
|
|
62865
|
-
let
|
|
62889
|
+
let residNCBI = chainid + '_' + n;
|
|
62890
|
+
let resid = ic.ncbi2resid[residNCBI];
|
|
62866
62891
|
domainAtoms = me.hashUtilsCls.unionHash(domainAtoms, ic.residues[resid]);
|
|
62867
62892
|
ic.resid2domainid[resid] = chainid + '-' + k;
|
|
62868
62893
|
}
|
|
@@ -67873,6 +67898,7 @@ class ShareLink {
|
|
|
67873
67898
|
//file (the comand history) is concatenated in the URL to show the current state.
|
|
67874
67899
|
async shareLink(bPngHtml, bPngOnly) { let ic = this.icn3d, me = ic.icn3dui;
|
|
67875
67900
|
let url = this.shareLinkUrl();
|
|
67901
|
+
|
|
67876
67902
|
let bTooLong =(url.length > 4000 || url.indexOf('http') !== 0) ? true : false;
|
|
67877
67903
|
if(bPngHtml) url += "&random=" + parseInt(Math.random() * 1000); // generate a new shorten URL and thus image name everytime
|
|
67878
67904
|
//var inputid =(ic.inputid) ? ic.inputid : "custom";
|
|
@@ -67904,40 +67930,53 @@ class ShareLink {
|
|
|
67904
67930
|
}
|
|
67905
67931
|
}
|
|
67906
67932
|
|
|
67907
|
-
let data = await this.getShareLinkPrms(url, bPngHtml);
|
|
67908
|
-
|
|
67909
67933
|
let shorturl = 'Problem in getting shortened URL';
|
|
67910
|
-
|
|
67911
|
-
|
|
67912
|
-
|
|
67913
|
-
|
|
67914
|
-
|
|
67915
|
-
|
|
67916
|
-
|
|
67917
|
-
|
|
67918
|
-
|
|
67919
|
-
|
|
67920
|
-
|
|
67921
|
-
|
|
67922
|
-
|
|
67923
|
-
|
|
67924
|
-
|
|
67925
|
-
|
|
67926
|
-
|
|
67927
|
-
|
|
67928
|
-
|
|
67929
|
-
|
|
67930
|
-
|
|
67931
|
-
|
|
67932
|
-
|
|
67933
|
-
|
|
67934
|
-
|
|
67935
|
-
|
|
67936
|
-
|
|
67934
|
+
|
|
67935
|
+
if(!me.cfg.notebook) {
|
|
67936
|
+
let data = await this.getShareLinkPrms(url, bPngHtml);
|
|
67937
|
+
|
|
67938
|
+
if(data.shortLink !== undefined) {
|
|
67939
|
+
shorturl = data.shortLink;
|
|
67940
|
+
if(bPngHtml) { // save png and corresponding html
|
|
67941
|
+
let strArray = shorturl.split("/");
|
|
67942
|
+
let shortName = strArray[strArray.length - 1];
|
|
67943
|
+
ic.saveFileCls.saveFile(inputid + '-' + shortName + '.png', 'png');
|
|
67944
|
+
let text = '<div style="float:left; border: solid 1px #0000ff; padding: 5px; margin: 10px; text-align:center;">';
|
|
67945
|
+
text += '<a href="https://structure.ncbi.nlm.nih.gov/icn3d/share.html?' + shortName + '" target="_blank">';
|
|
67946
|
+
text += '<img style="height:300px" src ="' + inputid + '-' + shortName + '.png"><br>\n';
|
|
67947
|
+
text += '<!--Start of your comments==================-->\n';
|
|
67948
|
+
let yournote =(ic.yournote) ? ': ' + ic.yournote.replace(/\n/g, "<br>").replace(/; /g, ", ") : '';
|
|
67949
|
+
text += 'PDB ' + inputid.toUpperCase() + yournote + '\n';
|
|
67950
|
+
text += '<!--End of your comments====================-->\n';
|
|
67951
|
+
text += '</a>';
|
|
67952
|
+
text += '</div>\n\n';
|
|
67953
|
+
ic.saveFileCls.saveFile(inputid + '-' + shortName + '.html', 'html', text);
|
|
67954
|
+
}
|
|
67955
|
+
}
|
|
67956
|
+
|
|
67957
|
+
if(bPngHtml && data.shortLink === undefined) {
|
|
67958
|
+
ic.saveFileCls.saveFile(inputid + '_icn3d_loadable.png', 'png');
|
|
67959
|
+
}
|
|
67960
|
+
|
|
67961
|
+
//shorturl: https://icn3d.page.link/NvbAh1Vmiwc4bgX87
|
|
67962
|
+
let urlArray = shorturl.split('page.link/');
|
|
67963
|
+
//if(urlArray.length == 2) shorturl = me.htmlCls.baseUrl + 'icn3d/share.html?' + urlArray[1];
|
|
67964
|
+
// When the baseURL is structure.ncbi.nlm.nih.gov, mmcifparser.cgi has a problem to past posted data in Mac/iphone
|
|
67965
|
+
// So the base URL is still www.ncbi.nlm.nih.gov/Structure,just use short URL here
|
|
67966
|
+
if(urlArray.length == 2) shorturl = 'https://structure.ncbi.nlm.nih.gov/icn3d/share.html?' + urlArray[1];
|
|
67967
|
+
|
|
67968
|
+
$("#" + ic.pre + "short_url").val(shorturl);
|
|
67969
|
+
$("#" + ic.pre + "short_url_title").val(shorturl + '&t=' + ic.yournote);
|
|
67970
|
+
}
|
|
67971
|
+
|
|
67972
|
+
let outputCmd = this.shareLinkUrl(undefined, true);
|
|
67973
|
+
let idStr = (me.cfg.url) ? "url=" + me.cfg.url : "mmdbafid=" + ic.inputid;
|
|
67974
|
+
let jnCmd = "view = icn3dpy.view(q='" + idStr + "',command='" + outputCmd + "')\nview";
|
|
67975
|
+
$("#" + ic.pre + "jn_commands").val(jnCmd);
|
|
67976
|
+
|
|
67937
67977
|
$("#" + ic.pre + "ori_url").val(url);
|
|
67938
|
-
|
|
67939
|
-
|
|
67940
|
-
if(!bPngHtml) me.htmlCls.dialogCls.openDlg('dl_copyurl', 'Copy a Share Link URL');
|
|
67978
|
+
|
|
67979
|
+
if(!bPngHtml) me.htmlCls.dialogCls.openDlg('dl_copyurl', 'Copy a Share Link URL or Jupyter Notebook Commands');
|
|
67941
67980
|
}
|
|
67942
67981
|
|
|
67943
67982
|
getShareLinkPrms(url, bPngHtml) { let ic = this.icn3d, me = ic.icn3dui;
|
|
@@ -67966,8 +68005,9 @@ class ShareLink {
|
|
|
67966
68005
|
});
|
|
67967
68006
|
}
|
|
67968
68007
|
|
|
67969
|
-
shareLinkUrl(bAllCommands) { let ic = this.icn3d, me = ic.icn3dui;
|
|
68008
|
+
shareLinkUrl(bAllCommands, bOutputCmd) { let ic = this.icn3d, me = ic.icn3dui;
|
|
67970
68009
|
let url = me.htmlCls.baseUrl + "icn3d/full.html?";
|
|
68010
|
+
let outputCmd = '';
|
|
67971
68011
|
if(me.cfg.bSidebyside) url = me.htmlCls.baseUrl + "icn3d/full2.html?";
|
|
67972
68012
|
|
|
67973
68013
|
if(ic.bInputUrlfile) {
|
|
@@ -68070,8 +68110,13 @@ class ShareLink {
|
|
|
68070
68110
|
|
|
68071
68111
|
url += 'command=';
|
|
68072
68112
|
|
|
68073
|
-
|
|
68074
|
-
|
|
68113
|
+
let start;
|
|
68114
|
+
if(me.cfg.notebook) {
|
|
68115
|
+
start =(inparaWithoutCommand !== undefined) ? 1 : 0;
|
|
68116
|
+
}
|
|
68117
|
+
else {
|
|
68118
|
+
start = 0;
|
|
68119
|
+
}
|
|
68075
68120
|
|
|
68076
68121
|
if(bAllCommands || ic.bInputUrlfile) start = 0;
|
|
68077
68122
|
|
|
@@ -68137,17 +68182,18 @@ class ShareLink {
|
|
|
68137
68182
|
prevCommandStr = commandStr;
|
|
68138
68183
|
}
|
|
68139
68184
|
|
|
68140
|
-
url += tmpUrl;
|
|
68141
|
-
|
|
68142
68185
|
// last command
|
|
68143
68186
|
if(prevCommandStr) {
|
|
68144
|
-
if(tmpUrl)
|
|
68145
|
-
if(cntToggle > 0 && cntToggle %2 == 0 && prevCommandStr !== toggleStr)
|
|
68187
|
+
if(tmpUrl) tmpUrl += '; ';
|
|
68188
|
+
if(cntToggle > 0 && cntToggle %2 == 0 && prevCommandStr !== toggleStr) tmpUrl += toggleStr + '; ';
|
|
68146
68189
|
|
|
68147
|
-
|
|
68190
|
+
tmpUrl += prevCommandStr + '|||' + ic.transformCls.getTransformationStr(transformation);
|
|
68148
68191
|
statefile += prevCommandStr + '|||' + ic.transformCls.getTransformationStr(transformation) + '\n';
|
|
68149
68192
|
}
|
|
68150
68193
|
|
|
68194
|
+
url += tmpUrl;
|
|
68195
|
+
outputCmd = tmpUrl;
|
|
68196
|
+
|
|
68151
68197
|
statefile = statefile.replace(/!/g, Object.keys(ic.structures)[0] + '_');
|
|
68152
68198
|
if((ic.bInputfile && !ic.bInputUrlfile) || (ic.bInputUrlfile && ic.bAppend) || url.length > 4000) url = statefile;
|
|
68153
68199
|
let id;
|
|
@@ -68160,7 +68206,7 @@ class ShareLink {
|
|
|
68160
68206
|
url = url.replace(new RegExp('blast_rep_id=!','g'), 'blast_rep_id=' + id + '_');
|
|
68161
68207
|
}
|
|
68162
68208
|
|
|
68163
|
-
return url;
|
|
68209
|
+
return (bOutputCmd) ? outputCmd : url;
|
|
68164
68210
|
}
|
|
68165
68211
|
|
|
68166
68212
|
getPngText() { let ic = this.icn3d; ic.icn3dui;
|
|
@@ -71404,7 +71450,7 @@ iCn3DUI.prototype.show3DStructure = async function(pdbStr) { let me = this;
|
|
|
71404
71450
|
|
|
71405
71451
|
ic.loadCmd = 'load alignment ' + me.cfg.align + ' | parameters ' + me.cfg.inpara;
|
|
71406
71452
|
me.htmlCls.clickMenuCls.setLogCmd(ic.loadCmd, true);
|
|
71407
|
-
if(me.cfg.inpara.indexOf('atype=2') == -1) {
|
|
71453
|
+
if(me.cfg.inpara && me.cfg.inpara.indexOf('atype=2') == -1) {
|
|
71408
71454
|
await ic.alignParserCls.downloadAlignment(me.cfg.align);
|
|
71409
71455
|
}
|
|
71410
71456
|
else {
|