icn3d 3.23.3 → 3.23.4

package/icn3d.js

@@ -41690,7 +41690,7 @@ class ShowSeq {
                     // skip non-protein residues
                     // after G strand and before A strand, just use the mapped reference number
                     if((!atom || ic.proteins.hasOwnProperty(atom.serial)) && prevStrand && !bCustom && !kabat_or_imgt
-                      && currStrand_ori.substr(0,1) != 'G') {
+                      && (!currStrand_ori || currStrand_ori.substr(0,1) != 'G')) {
                         // no ref num
                         bLoop = true;
 
@@ -41798,7 +41798,10 @@ class ShowSeq {
             refnumLabelNoPostfix = currStrand + refnum;
 
             //if(currCnt == 0 || currCnt == halfLen || currCnt == halfLen + 1 || currCnt == end - 1) {
-            if(currCnt == 1 || currCnt == halfLen || currCnt == halfLen + 1 || currCnt == end - 1) {
+            // if(currCnt == 1 || currCnt == halfLen || currCnt == halfLen + 1 || currCnt == end - 1) {
+            //     bHidelabel = true;
+            // }
+            if(currCnt == 1 || currCnt == end - 1) {
                 bHidelabel = true;
             }
 
@@ -41829,7 +41832,7 @@ class ShowSeq {
     getRefnumHtml(residueid, refnumStr, refnumStr_ori, refnumLabel, currStrand, bLoop, bHidelabel) { let ic = this.icn3d, me = ic.icn3dui;
         let refnum = parseInt(refnumStr).toString();
         let color = this.getRefnumColor(currStrand);
-        let colorStr = 'style="color:' + color + '"';
+        let colorStr = (!bLoop) ? 'style="color:' + color + '; text-decoration: underline overline;"' : 'style="color:' + color + '"';
 
         let lastTwo = parseInt(refnum.substr(refnum.length - 2, 2));
         parseInt(refnum.substr(refnum.length - 3, 3));
@@ -41856,43 +41859,43 @@ class ShowSeq {
 
     getRefnumColor(currStrand) {  let ic = this.icn3d; ic.icn3dui;
         if(currStrand == "A^") { // deep sky blue
-            return '#00BFFF';
+            return '#9900ff'; //'#00BFFF';
         }
         else if(currStrand == "A") { // blue
-            return '#0000FF';
+            return '#9900ff'; //'#0000FF';
         }
         else if(currStrand == "A*") { // sky blue
-            return '#87CEEB';
+            return '#9900ff'; //'#87CEEB';
         }
         else if(currStrand == "A'") { // steel blue
-            return '#4682B4';
+            return '#9900ff'; //'#4682B4';
         }
         else if(currStrand == "B") { // cyan
-            return '#00FFFF';
+            return '#4a86e8'; //'#00FFFF';
         }
         else if(currStrand == "C") { // green
-            return '#00FF00';
+            return '#76d6ff'; //'#00FF00';
         }
         else if(currStrand == "C'") { // yellow
-            return '#FFFF00';
+            return '#00b050'; //'#FFFF00';
         }
         else if(currStrand == "C''") { // orange
-            return '#FFA500';
+            return '#00ff00'; //'#FFA500';
         }
         else if(currStrand == "D") { // brown
-            return '#A52A2A';
+            return '#fffb00'; //'#A52A2A';
         }
         else if(currStrand == "E") { // pink
-            return '#FFC0CB';
+            return '#ffd966'; //'#FFC0CB';
         }
         else if(currStrand == "F") { // magenta
-            return '#FF00FF';
+            return '#ff9900'; //'#FF00FF';
         }
         else if(currStrand == "G") { // red
-            return '#FF0000';
+            return '#ff2600'; //'#FF0000';
         }
         else if(currStrand == "G*") { // salmon
-            return '#FA8072';
+            return '#ff2600'; //'#FA8072';
         }
         else {
             return '#000';