hypomnema 1.3.1 → 1.3.2

package/.claude-plugin/marketplace.json

@@ -8,10 +8,10 @@
   },
   "plugins": [
     {
-      "name": "hypomnema",
+      "name": "hypo",
       "source": "./",
       "description": "LLM-native personal wiki — session-aware knowledge base for Claude Code",
-      "version": "1.3.1",
+      "version": "1.3.2",
       "homepage": "https://github.com/sk-lim19f/Hypomnema"
     }
   ]

package/.claude-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
-  "name": "hypomnema",
-  "version": "1.3.1",
+  "name": "hypo",
+  "version": "1.3.2",
   "description": "LLM-native personal wiki system — session-aware knowledge base for Claude Code",
   "author": {
     "name": "sk-lim19f",

package/README.ko.md

@@ -24,14 +24,14 @@ _Claude에게 기록을 맡기세요 — 그리고 그 기록이 실제로 쌓
 > **아래에서 자주 쓰이는 용어 간단 정리.** *프런트매터(frontmatter)* = 마크다운 파일 맨 위의 YAML 블록. *위키링크(wikilink)* = `[[페이지-슬러그]]` 형태의 교차 참조. *ADR* = "Architecture Decision Record" — 어떤 설계 결정을 *왜* 했는지 짧게 적은 마크다운 페이지. *projection*(투영) = 한 방향 자동 파생(`pages/feedback/*.md` → `MEMORY.md` / `<learned_behaviors>`). *훅(hook)* = Claude Code가 라이프사이클 이벤트에서 자동으로 실행하는 스크립트. *hot.md* / *session-state.md* = "방금 무엇을 했는지"와 "다음에 무엇을 할지"를 담는 프로젝트별 캐시 파일 — 멈춘 프로젝트를 한 번에 이어 받을 수 있게 합니다. 전체 용어 풀이는 [용어 사전](#용어-사전) 참조.
 
 > **현재 자동화 범위와 다음 목표.** v1.3.0(현재)은 트리거 모델을 솔직하게 정리합니다. 위키 작업(자료 정리·검색·세션 마무리)은 여전히 사용자가 `/hypo:*` 명령어를 직접 입력해 시작합니다. 다만 **v1.1.0**부터 위키가 한 세션에서 얼마나 활용됐는지를 측정하는 *관측성 지표(observability score)* 가 들어갔고, **v1.2.0**은 그 위에 사용자가 시키지 않아도 자동으로 동작하는 영역 4개를 추가했습니다:
-> - **`feedback` 페이지를 단일 원천(source of truth)으로**(ADR 0031) — `pages/feedback/`에 한 번만 적으면, 위키가 `MEMORY.md`와 `~/.claude/CLAUDE.md`의 `<learned_behaviors>` 블록을 자동으로 갱신합니다.
-> - **확장 파일 동봉 동기화**(ADR 0024) — 위키 안의 `~/hypomnema/extensions/{agents,commands,hooks,skills}/`에 둔 파일을 자동으로 `~/.claude/`에 반영합니다. `--codex` 옵션을 추가하면 `hooks`·`commands`는 `~/.codex/`에도 반영되지만, `agents`와 `skills`는 Claude 전용이라 의도적으로 건너뜁니다.
-> - **프로젝트 자동 생성**(ADR 0023) — 작업 디렉터리를 git 저장소(`package.json`·`Cargo.toml` 등의 프로젝트 표식이 있는 곳)로 옮겼을 때 대응하는 위키 프로젝트가 없으면, 새로 만들지 물어봅니다.
-> - **세션 종료 자동 정리와 `/clear` 복구**(ADR 0022) — 의미 있는 세션이 끝날 때 "마무리 메모를 짧게 남길까요?"가 자동으로 뜨고, 마무리하지 않은 채 `/clear`를 입력해도 다음 세션 시작 시 이어서 정리할 수 있습니다.
+> - **`feedback` 페이지를 단일 원천(source of truth)으로** — `pages/feedback/`에 한 번만 적으면, 위키가 `MEMORY.md`와 `~/.claude/CLAUDE.md`의 `<learned_behaviors>` 블록을 자동으로 갱신합니다.
+> - **확장 파일 동봉 동기화** — 위키 안의 `~/hypomnema/extensions/{agents,commands,hooks,skills}/`에 둔 파일을 자동으로 `~/.claude/`에 반영합니다. `--codex` 옵션을 추가하면 `hooks`·`commands`는 `~/.codex/`에도 반영되지만, `agents`와 `skills`는 Claude 전용이라 의도적으로 건너뜁니다.
+> - **프로젝트 자동 생성** — 작업 디렉터리를 git 저장소(`package.json`·`Cargo.toml` 등의 프로젝트 표식이 있는 곳)로 옮겼을 때 대응하는 위키 프로젝트가 없으면, 새로 만들지 물어봅니다.
+> - **세션 종료 자동 정리와 `/clear` 복구** — 의미 있는 세션이 끝날 때 "마무리 메모를 짧게 남길까요?"가 자동으로 뜨고, 마무리하지 않은 채 `/clear`를 입력해도 다음 세션 시작 시 이어서 정리할 수 있습니다.
 >
 > 스키마(`SCHEMA.md`)는 2.0으로 올라갑니다. `feedback` 페이지 타입에 9개의 필수 항목이 추가되며, `hypomnema upgrade --apply`를 실행하면 위키 루트에 `MIGRATION-v2.0.md`가 생성되어 단계별 보강 체크리스트를 제공합니다. 사용자가 직접 편집한 `SCHEMA.md`는 upgrade가 **덮어쓰지 않습니다** — 안내만 표시하고, 실제 반영은 사용자가 수동으로 결정합니다(이 정책을 코드에서는 *Option C*로 부릅니다).
 >
-> **v1.3.0**은 자율성을 넓히기보다 이 레이어를 다듬습니다. 세션 마무리 흐름에 *권고형* 성찰 4가지(자동 실행 없이 제안만 — ADR 0029)가 들어가고, `hypomnema lint --strict`가 선택된 경고를 에러로 승격해 릴리스 게이트로 쓸 수 있으며, 설치가 **stale-sibling 감지**로 단단해집니다 — `$PATH`에 남은 더 오래된 `hypomnema`가 더는 활성 훅을 조용히 다운그레이드하지 못합니다(ADR 0038).
+> **v1.3.0**은 자율성을 넓히기보다 이 레이어를 다듬습니다. 세션 마무리 흐름에 *권고형* 성찰 4가지(자동 실행 없이 제안만)가 들어가고, `hypomnema lint --strict`가 선택된 경고를 에러로 승격해 릴리스 게이트로 쓸 수 있으며, 설치가 **stale-sibling 감지**로 단단해집니다 — `$PATH`에 남은 더 오래된 `hypomnema`가 더는 활성 훅을 조용히 다운그레이드하지 못합니다.
 
 ---
 
@@ -45,7 +45,7 @@ Claude Code 안에서:
 
 ```
 /plugin marketplace add sk-lim19f/Hypomnema
-/plugin install hypomnema@hypomnema
+/plugin install hypo@hypomnema
 /hypo:init
 ```
 
@@ -240,16 +240,16 @@ v1.0에서는 `personal / shared / public` 3-mode를 만들었습니다. 현실
 | `hypo-auto-commit.mjs` | `Stop` | 자동 commit + pull + push |
 | `hypo-hot-rebuild.mjs` | `Stop` | `hot.md` 재생성 |
 | `hypo-personal-check.mjs` | `PreCompact` | lint 실패 / session-close 미완 시 compact 차단 |
-| `hypo-session-end.mjs` | `SessionEnd` | SessionEnd 마커 기록 — 다음 SessionStart가 `source=clear` 복구를 감지하기 위함 (ADR 0022) |
+| `hypo-session-end.mjs` | `SessionEnd` | SessionEnd 마커 기록 — 다음 SessionStart가 `source=clear` 복구를 감지하기 위함 |
 | `hypo-session-record.mjs` | `Stop` | observability 점수 + auto-resume 신호용 세션 메타데이터 기록 |
-| `hypo-auto-minimal-crystallize.mjs` | `Stop` | 단순하지 않은 세션이 끝났을 때 `/hypo:crystallize --apply-session-close --minimal`을 자동 제안 (사용자가 동의하면 실행, ADR 0022 Layer 3) |
+| `hypo-auto-minimal-crystallize.mjs` | `Stop` | 단순하지 않은 세션이 끝났을 때 `/hypo:crystallize --apply-session-close --minimal`을 자동 제안 (사용자가 동의하면 실행) |
 | `hypo-web-fetch-ingest.mjs` | `PostToolUse(WebFetch/WebSearch)` | WebFetch/WebSearch 완료 후 `additionalContext`에 `/hypo:ingest` 권유 안내 주입 (privacy 보호: WebFetch URL의 query/hash/userinfo 제거) |
 
 모든 훅은 위키 루트를 `HYPO_DIR` 환경변수 → `hypo-config.md` 스캔 → `~/hypomnema` 기본값 순으로 해결하며, `hypo-shared.mjs`(`hooks.json`의 `shared` 필드로 선언)를 공유합니다.
 
 이와 별도로 `SessionStart` 훅은 npm 레지스트리와 Claude Code 플러그인 마켓플레이스를 백그라운드에서 확인합니다(세션 시작을 막지 않습니다). 새 버전이 게시되어 있으면 다음 세션 시작 시 "Update available!" 안내가 한 줄 표시됩니다. `HYPO_NO_UPDATE_CHECK=1`, `NO_UPDATE_NOTIFIER=1`을 지정하거나 `CI=true` 환경에서 실행하면 점검을 건너뜁니다.
 
-위 네 가지 레인 외의 v1.3 세부 수정 — 세션 마무리 lint를 건드린 파일로 스코프해 무관한 debt로 `/compact`가 막히지 않게 한 변경(ADR 0037), `feedback` scope 검증기가 cwd 유래 project id를 수용하게 한 수정(OQ-34), `--strict`가 에러로 승격하는 안정적 lint 경고 ID `W1`/`W2`/`W4`(`--fix`로 자동복구되는 `W3`는 경고로 유지) — 은 [`CHANGELOG.md`](CHANGELOG.md)를 참고하세요.
+위 네 가지 레인 외의 v1.3 세부 수정 — 세션 마무리 lint를 건드린 파일로 스코프해 무관한 debt로 `/compact`가 막히지 않게 한 변경, `feedback` scope 검증기가 cwd 유래 project id를 수용하게 한 수정, `--strict`가 에러로 승격하는 안정적 lint 경고 ID `W1`/`W2`/`W4`(`--fix`로 자동복구되는 `W3`는 경고로 유지) — 은 [`CHANGELOG.md`](CHANGELOG.md)를 참고하세요. **v1.3.1**은 수정 전용 패치입니다: 업데이트 notifier 배너가 이제 보이지 않던 stderr 출력 대신 top-level `systemMessage` 채널로 실제 사용자에게 도달하고, `/hypo:upgrade`가 플러그인·dual(수동+플러그인) 설치에서 core 훅을 중복 등록하지 않으며, 세션 마무리가 두 프로젝트가 같은 최신 날짜를 가질 때 완료된 close를 false-block 하지 않습니다. **v1.3.2**는 비-프로젝트(툴링·위키 전용) 세션을 무관한 프로젝트에 엮지 않고 닫는 1급 log-only close 경로와, 페이지 이름을 바꿀 때 해당하는 인바운드 위키링크를 갱신하는 `rename` 헬퍼를 추가합니다(모호하거나 append-only인 참조는 갱신하지 않고 보고합니다). 또한 세션 마무리 게이트(오늘 활동한 모든 프로젝트를 게이트, 세션별 마커와 `/compact`가 하나의 게이트를 공유, 도출 가능한 루트 `log.md` 항목 자동 도출)와 linter(`--json`이 파이프에서 잘리지 않음, 볼트 관습 위키링크를 오탐 대신 정상 해석)를 수정합니다.
 
 ### 셋업 & 유지보수
 
@@ -348,7 +348,7 @@ Claude가 잘못한 순간 — 또는 반대로 정확히 잘한 순간 — `/hy
 
 > **모델 사업자에게 전송되는 범위 안내.** Hypomnema 훅은 위키 본문을 Claude Code의 추가 컨텍스트(`additionalContext`)에 실어 보내며, 이 내용은 프롬프트의 일부로 Claude 모델 사업자에게 전송됩니다. 따라서 `.hypoignore`에 등록된 경로는 모든 주입 훅(`hypo-file-watch`, `hypo-session-start`, `hypo-cwd-change`, `hypo-lookup`)과 `ingest`에서 제외되지만, 등록되지 *않은* 파일은 전송 대상이 됩니다. (`hypo-auto-stage`/`hypo-auto-commit`은 git 스테이징용 훅이라 컨텍스트를 주입하지는 않지만, 스테이징 판단에도 동일하게 `.hypoignore`를 참고합니다.) 비밀 정보는 위키에 두지 마시고, `HYPO_DIR` 아래에 민감한 내용을 저장하기 전에 `.hypoignore` 패턴을 먼저 점검하시기 바랍니다.
 
-> **git sync 범위.** Hypomnema는 `~/hypomnema/` 위키 자체만 git sync합니다. 단, `init` / `upgrade`는 `~/.claude/` 내부의 관리 대상 영역 — Hypomnema 자체 hook(`~/.claude/hooks/`), 슬래시 커맨드(`~/.claude/commands/hypo/`), `settings.json` 등록 — 을 설치·SHA 추적하며, v1.2.0 **extensions companion sync**(ADR 0024)에 의해 위키의 `~/hypomnema/extensions/`에 둔 `agents/`·`commands/`·`hooks/`·`skills/`도 자동 미러링합니다(`--codex` 옵션 시 `hooks`·`commands` 부분 집합만 `~/.codex/`로). 이 관리 대상 영역 *바깥*의 `~/.claude/` 콘텐츠는 의도적으로 Hypomnema가 **관리하지 않습니다** — 위키를 거치지 않는 기타 agent/skill, 머신 고유 `settings.local.json` 등 일반적인 Claude Code 설정 기기 간 동기화는 [chezmoi](https://www.chezmoi.io/) 같은 별도 dotfiles 매니저 사용을 권장합니다.
+> **git sync 범위.** Hypomnema는 `~/hypomnema/` 위키 자체만 git sync합니다. 단, `init` / `upgrade`는 `~/.claude/` 내부의 관리 대상 영역 — Hypomnema 자체 hook(`~/.claude/hooks/`), 슬래시 커맨드(`~/.claude/commands/hypo/`), `settings.json` 등록 — 을 설치·SHA 추적하며, v1.2.0 **extensions companion sync**에 의해 위키의 `~/hypomnema/extensions/`에 둔 `agents/`·`commands/`·`hooks/`·`skills/`도 자동 미러링합니다(`--codex` 옵션 시 `hooks`·`commands` 부분 집합만 `~/.codex/`로). 이 관리 대상 영역 *바깥*의 `~/.claude/` 콘텐츠는 의도적으로 Hypomnema가 **관리하지 않습니다** — 위키를 거치지 않는 기타 agent/skill, 머신 고유 `settings.local.json` 등 일반적인 Claude Code 설정 기기 간 동기화는 [chezmoi](https://www.chezmoi.io/) 같은 별도 dotfiles 매니저 사용을 권장합니다.
 
 ### `/hypo:*` 커맨드는 어디서 오는가?
 

package/README.md

@@ -24,14 +24,14 @@ _Make Claude take notes — and measure whether it actually does._
 > **Quick decoder for terms used below.** *frontmatter* = the YAML block at the top of a markdown file; *wikilink* = a `[[page-slug]]` cross-reference; *ADR* = "Architecture Decision Record", a short markdown page that records *why* a design choice was made; *projection* = a one-way derive (`pages/feedback/*.md` → `MEMORY.md` / `<learned_behaviors>`); *hook* = a script that Claude Code runs automatically on lifecycle events; *hot.md* / *session-state.md* = the per-project cache files that hold "what just happened" and "what's next" so a paused project resumes in one read. Full glossary lives under [Term decoder](#term-decoder).
 
 > **Current state vs. v2 vision.** v1.3.0 (today) is honest about its trigger model: most wiki behavior — ingest, query, session-close — still fires on **explicit `/hypo:*` commands**, but the auto-behavior surface is growing. The v2 thesis is *fully autonomous* — Claude reading, writing, and synthesizing the wiki without being asked. **v1.1.0** shipped the **observability score** that measures how often the wiki is actually used per session (ingest / query / session-close / citation rates). **v1.2.0** adds four load-bearing autonomous lanes on top:
-> - **feedback-as-SoT with one-way projections** — `pages/feedback/` becomes the single source-of-truth (SoT) for behavior corrections; the wiki one-way derives `MEMORY.md` and the `<learned_behaviors>` block inside `~/.claude/CLAUDE.md`, so you edit one place and the projections refresh on their own (ADR 0031 — full design rationale lives in `projects/hypomnema/decisions/0031-*.md` inside your wiki).
-> - **extensions companion sync** — anything you drop under `~/hypomnema/extensions/{agents,commands,hooks,skills}/` is mirrored into `~/.claude/` automatically; the optional `--codex` flag additionally mirrors `hooks` and `commands` into `~/.codex/` (agents/skills are Claude-only and skipped on the Codex target by design) (ADR 0024).
-> - **auto-project creation on cwd match** — when you `cd` into a git repo with a project marker (`package.json`, `Cargo.toml`, etc.) and no matching wiki project exists, Hypomnema offers to scaffold one for you (ADR 0023).
-> - **Stop-chain auto-minimal-crystallize + `/clear` recovery** — non-trivial sessions get an automatic "save a minimal session-close note?" prompt; `/clear` after a forgotten close is detected and recovered cleanly (ADR 0022).
+> - **feedback-as-SoT with one-way projections** — `pages/feedback/` becomes the single source-of-truth (SoT) for behavior corrections; the wiki one-way derives `MEMORY.md` and the `<learned_behaviors>` block inside `~/.claude/CLAUDE.md`, so you edit one place and the projections refresh on their own.
+> - **extensions companion sync** — anything you drop under `~/hypomnema/extensions/{agents,commands,hooks,skills}/` is mirrored into `~/.claude/` automatically; the optional `--codex` flag additionally mirrors `hooks` and `commands` into `~/.codex/` (agents/skills are Claude-only and skipped on the Codex target by design).
+> - **auto-project creation on cwd match** — when you `cd` into a git repo with a project marker (`package.json`, `Cargo.toml`, etc.) and no matching wiki project exists, Hypomnema offers to scaffold one for you.
+> - **Stop-chain auto-minimal-crystallize + `/clear` recovery** — non-trivial sessions get an automatic "save a minimal session-close note?" prompt; `/clear` after a forgotten close is detected and recovered cleanly.
 >
 > The schema (`SCHEMA.md`) bumps to 2.0 — the `feedback` page type now requires 9 mandatory frontmatter fields. `hypomnema upgrade --apply` writes `MIGRATION-v2.0.md` into the wiki root with a step-by-step backfill checklist. Your own `SCHEMA.md` is **never overwritten** by upgrade — we call this policy *Option C*: the upgrade only tells you what changed, and you apply the diff yourself.
 >
-> **v1.3.0** refines this layer rather than expanding autonomy: the session-close flow gains four *advisory* reflections (they suggest, never auto-act — ADR 0029), `hypomnema lint --strict` promotes selected warnings to errors for release gates, and install hardens with **stale-sibling detection** — an older `hypomnema` on `$PATH` can no longer silently downgrade your active hooks (ADR 0038).
+> **v1.3.0** refines this layer rather than expanding autonomy: the session-close flow gains four *advisory* reflections (they suggest, never auto-act), `hypomnema lint --strict` promotes selected warnings to errors for release gates, and install hardens with **stale-sibling detection** — an older `hypomnema` on `$PATH` can no longer silently downgrade your active hooks.
 
 ---
 
@@ -45,7 +45,7 @@ Inside Claude Code:
 
 ```
 /plugin marketplace add sk-lim19f/Hypomnema
-/plugin install hypomnema@hypomnema
+/plugin install hypo@hypomnema
 /hypo:init
 ```
 
@@ -240,16 +240,16 @@ Eight commands cover the full capture → retrieval → consolidation cycle.
 | `hypo-auto-commit.mjs` | `Stop` | Auto commit + pull + push |
 | `hypo-hot-rebuild.mjs` | `Stop` | Rebuild `hot.md` |
 | `hypo-personal-check.mjs` | `PreCompact` | Block compact on lint failures or unfinished session-close |
-| `hypo-session-end.mjs` | `SessionEnd` | Write a SessionEnd marker so SessionStart can detect `source=clear` recovery (ADR 0022) |
+| `hypo-session-end.mjs` | `SessionEnd` | Write a SessionEnd marker so SessionStart can detect `source=clear` recovery |
 | `hypo-session-record.mjs` | `Stop` | Record session metadata for the observability score and auto-resume signaling |
-| `hypo-auto-minimal-crystallize.mjs` | `Stop` | Offer (and on consent run) `/hypo:crystallize --apply-session-close --minimal` after non-trivial sessions (ADR 0022 Layer 3) |
+| `hypo-auto-minimal-crystallize.mjs` | `Stop` | Offer (and on consent run) `/hypo:crystallize --apply-session-close --minimal` after non-trivial sessions |
 | `hypo-web-fetch-ingest.mjs` | `PostToolUse(WebFetch/WebSearch)` | Inject a `/hypo:ingest` nudge into `additionalContext` after a URL resolution (privacy-aware: redacts query/hash/userinfo) |
 
 All hooks resolve the wiki root via `HYPO_DIR` env → `hypo-config.md` scan → `~/hypomnema` default, and share `hypo-shared.mjs` (declared via `hooks.json`'s `shared` field).
 
 Additionally, the `SessionStart` hook performs a non-blocking background check against npm and the Claude Code plugin marketplace and prints an "Update available!" banner the next time a newer Hypomnema version has been published. Opt out with `HYPO_NO_UPDATE_CHECK=1`, `NO_UPDATE_NOTIFIER=1`, or by running under `CI=true`.
 
-For fix-level v1.3 detail beyond the lanes above — session-close lint scoped to touched files so `/compact` is no longer blocked by unrelated debt (ADR 0037), the `feedback` scope validator accepting cwd-derived project ids (OQ-34), and the stable lint warning IDs `W1`/`W2`/`W4` that `--strict` promotes to errors (while `W3`, auto-repaired by `--fix`, stays a warning) — see [`CHANGELOG.md`](CHANGELOG.md).
+For fix-level v1.3 detail beyond the lanes above — session-close lint scoped to touched files so `/compact` is no longer blocked by unrelated debt, the `feedback` scope validator accepting cwd-derived project ids, and the stable lint warning IDs `W1`/`W2`/`W4` that `--strict` promotes to errors (while `W3`, auto-repaired by `--fix`, stays a warning) — see [`CHANGELOG.md`](CHANGELOG.md). **v1.3.1** is a fixes-only patch: update-notifier banners now actually reach the user via the top-level `systemMessage` channel instead of an invisible stderr write, `/hypo:upgrade` no longer double-registers core hooks for plugin or dual (manual + plugin) installs, and session-close no longer false-blocks a completed close when two projects share the latest date. **v1.3.2** adds a first-class log-only session-close path, so a non-project (tooling or wiki-only) session closes cleanly without being forced onto an unrelated project, plus a `rename` helper that rewrites the eligible inbound wikilinks when you rename a page (ambiguous or append-only references are reported, not rewritten). It also tightens the session-close gate (every project with activity today is gated, the per-session marker and `/compact` share one gate, and the derivable root `log.md` entry auto-derives) and the linter (`--json` no longer truncates on a pipe, and vault-convention wikilinks resolve instead of being false-flagged).
 
 ### Setup & maintenance
 
@@ -348,7 +348,7 @@ Place a `hypo-config.md` at the wiki root to make it portable across machines wi
 
 > **Provider transmission disclaimer.** Hypomnema hooks emit wiki content into Claude Code's `additionalContext`, which is transmitted to the Claude model provider as part of the prompt. `.hypoignore` is enforced at every content-injection hook (`hypo-file-watch`, `hypo-session-start`, `hypo-cwd-change`, `hypo-lookup`) and at `ingest`, but any file *not* matched by `.hypoignore` is fair game for transmission. (`hypo-auto-stage` and `hypo-auto-commit` are git-staging hooks, not injection points, and also honor `.hypoignore` for their staging decisions.) Keep secrets out of the wiki, and review `.hypoignore` patterns before storing anything sensitive under `HYPO_DIR`.
 
-> **Scope of git sync.** Hypomnema git-syncs only the `~/hypomnema/` wiki itself. `init` / `upgrade` actively install and SHA-track a defined surface inside `~/.claude/` — Hypomnema's own hooks (`~/.claude/hooks/`), slash commands (`~/.claude/commands/hypo/`), and `settings.json` registrations — plus, via v1.2.0 **extensions companion sync** (ADR 0024), any `agents/` · `commands/` · `hooks/` · `skills/` you ship inside `~/hypomnema/extensions/` (and with `--codex`, the `hooks` + `commands` subset into `~/.codex/`). Anything *outside* that defined surface in `~/.claude/` is intentionally **not** managed by Hypomnema — for general cross-machine sync of Claude Code configuration (other agents/skills not staged via the wiki, machine-specific `settings.local.json`, etc.), the recommended pattern is still a separate dotfiles manager such as [chezmoi](https://www.chezmoi.io/).
+> **Scope of git sync.** Hypomnema git-syncs only the `~/hypomnema/` wiki itself. `init` / `upgrade` actively install and SHA-track a defined surface inside `~/.claude/` — Hypomnema's own hooks (`~/.claude/hooks/`), slash commands (`~/.claude/commands/hypo/`), and `settings.json` registrations — plus, via v1.2.0 **extensions companion sync**, any `agents/` · `commands/` · `hooks/` · `skills/` you ship inside `~/hypomnema/extensions/` (and with `--codex`, the `hooks` + `commands` subset into `~/.codex/`). Anything *outside* that defined surface in `~/.claude/` is intentionally **not** managed by Hypomnema — for general cross-machine sync of Claude Code configuration (other agents/skills not staged via the wiki, machine-specific `settings.local.json`, etc.), the recommended pattern is still a separate dotfiles manager such as [chezmoi](https://www.chezmoi.io/).
 
 ### Where do `/hypo:*` commands live?
 

package/commands/crystallize.md

@@ -20,8 +20,8 @@ If the user invoked `/hypo:crystallize` to close a session (phrases like "세션
 Before composing the payload (Step 2), run these four reflections and surface each to the user. Every one is **advisory** (ADR 0029 identity guard) — the user confirms or declines, and none performs an automatic action, writes a file on its own, or bypasses the mandatory gate.
 
 1. **Trivial-session check (#44)** — Was this session trivial (a single bug fix, a single-file edit, or Q&A with no durable artifact)? If so, recommend skipping session-close: *"이 세션은 trivial해 보입니다 — session-close를 건너뛸까요?"* and proceed only if the user wants a close. A trivial skip is a recommendation, **not** a bypass: it must not mark the session closed, must not run `--mark-session-closed`, and must not claim `/compact` can pass. Any real close still requires all 5 mandatory files.
-2. **ADR-candidate check (#41)** — Did this session make an architectural or design decision (a new pattern, a tradeoff chosen, a convention established)? If yes, ask whether it warrants an ADR and, if so, capture that intent in the `sessionLog` entry you compose in Step 2. If nothing rose to ADR level, record `ADR 없음 — <one-line reason>` in that same `sessionLog` entry. **Never auto-write an ADR file** — recording the decision (or its absence) in the session-log payload is the only action here.
-3. **design-history staleness check (#42)** — If `projects/<name>/design-history.md` exists and this session changed design decisions it does not yet reflect, recommend updating it (the W8 lint warning flags this mechanically; an active-project W8 can also block at PreCompact). If the file does not exist, skip silently — do **not** create it just for this check. Never auto-update it.
+2. **ADR-candidate check (#41)** — Did this session make an architectural or design decision (a new pattern, a tradeoff chosen, a convention established)? If yes, ask whether it warrants an ADR and, if so, capture that intent in the `sessionLog` entry you compose in Step 2. If nothing rose to ADR level, you may record `ADR 없음 — <one-line reason>` in that same `sessionLog` entry — but gate it on #42's bar: the marker is machine-read and W8 excludes an entry carrying `ADR 없음` (with no ADR reference) from the design-history staleness check. Write it only when the session had **no design change at all**; a sub-ADR design shift takes #42a (append) instead, since the marker would suppress the W8 nudge it needs. **Never auto-write an ADR file** — recording the decision (or its absence) in the session-log payload is the only action here.
+3. **design-history staleness check (#42)** — Two branches, so a stale W8 never blocks a clean close: (a) if this session changed design decisions `projects/<name>/design-history.md` does not yet reflect — including sub-ADR background / tradeoff / differentiation shifts — recommend appending now (the W8 lint warning flags this mechanically; an active-project W8 hard-blocks at PreCompact — append before you commit). (b) only if the session made **no** design change does the `ADR 없음` marker (#41) exempt the entry from W8; do not touch design-history. `ADR 없음` means "no design change," a stricter bar than "no ADR-level decision." If the file does not exist, skip silently — do **not** create it just for this check. Never auto-update it.
 4. **Ingest check (#43)** — Did this session consume trustworthy external knowledge (a fetched URL, official docs, or code you verified directly)? If so, recommend running `/hypo:ingest` to capture it under `sources/`. Proceed only on the user's confirmation.
 
 These are judgment calls; when uncertain, surface the question rather than skip it. None of the four blocks the close or writes on its own.
@@ -30,7 +30,7 @@ These are judgment calls; when uncertain, surface the question rather than skip
 
 ## Step 2 — Compose the session-close payload
 
-The session-close path is **payload-driven** (fix #38). Instead of writing the 5 mandatory files one-by-one, you compose a single JSON payload that describes the full session-close state, then hand it to `crystallize.mjs --apply-session-close`, which performs idempotent atomic writes and gates the result with lint.
+The session-close path is **payload-driven**. Instead of writing the 5 mandatory files one-by-one, you compose a single JSON payload that describes the full session-close state, then hand it to `crystallize.mjs --apply-session-close`, which performs idempotent atomic writes and gates the result with lint.
 
 Payload shape (5 required + 1 conditional, per Spec §5.2.7 / §8.3 + ADR 0029):
 
@@ -41,7 +41,7 @@ Payload shape (5 required + 1 conditional, per Spec §5.2.7 / §8.3 + ADR 0029):
   "sessionState": { "content": "<full body of projects/<name>/session-state.md>" },
   "projectHot": { "content": "<full body of projects/<name>/hot.md>" },
   "rootHot": { "content": "<full body of <hypo-root>/hot.md>" },
-  "sessionLog": { "entry": "<entry to append to projects/<name>/session-log/YYYY-MM.md>" },
+  "sessionLog": { "entry": "<entry to append to projects/<name>/session-log/YYYY-MM-DD.md (daily shard)>" },
   "log": { "entry": "<entry to append to <hypo-root>/log.md>" },
   "openQuestions": { "content": "<full body of pages/open-questions.md>" }
 }
@@ -67,7 +67,7 @@ Content guidance for each slot:
 1. **sessionState** — next tasks list for the upcoming session (what to tackle first next time).
 2. **projectHot** — session snapshot under 500 words: what changed and decisions made. Do **not** put next-step tasks here; those belong in `sessionState`.
 3. **rootHot** — active-projects pointer table with this project's `Last Session` date set to today.
-4. **sessionLog** — one session entry to append to `projects/<name>/session-log/YYYY-MM.md`.
+4. **sessionLog** — one session entry to append to `projects/<name>/session-log/YYYY-MM-DD.md` (daily shard).
 5. **log** — one `session` entry to append to `<hypo-root>/log.md`.
 6. **openQuestions** (conditional) — only if `pages/open-questions.md` exists and questions were raised or resolved this session.
 
@@ -84,7 +84,7 @@ node <package-root>/scripts/crystallize.mjs \
   --json
 ```
 
-**`--session-id` (fix #27 PR-C):** pass the current session's id whenever you
+**`--session-id`:** pass the current session's id whenever you
 know it — most importantly when this close was triggered by a `[WIKI_AUTOCLOSE]`
 Stop-hook block (the block reason prints the exact `--session-id` to use). On a
 verified close (`ok: true` + clean git tree), it writes the per-session marker
@@ -93,7 +93,7 @@ Stop-chain Layer 3 hook (`hypo-auto-minimal-crystallize`) the session is closed,
 so it stops re-prompting. Omit it only when running crystallize purely for
 synthesis (no session-close intent) — the marker is then simply not written.
 
-**Behavior (fix #39 option D + fix #40 lint gates):**
+**Behavior (option D + lint gates):**
 
 | Invocation | Behavior |
 |---|---|
@@ -102,7 +102,7 @@ synthesis (no session-close intent) — the marker is then simply not written.
 | `--apply-session-close --payload=<path> --session-id=<id>` | Same as above, **plus** writes the per-session closed marker on success (clean git required). The Stop-chain Layer 3 path. |
 | `--apply-session-close --force` | Skips the probe early-exit. `--payload` still required for any actual apply work. |
 
-**Two lint gates run automatically (fix #40), scoped to the files this close writes:**
+**Two lint gates run automatically, scoped to the files this close writes:**
 
 Both gates judge only the **payload files** (the 5 mandatory close files + `open-questions.md`). Lint debt in other projects or shared `pages/` this close did not author is reported as a non-blocking `notices[]` entry, never gated — so an unrelated broken page elsewhere cannot block your close.
 

package/commands/feedback.md

@@ -2,7 +2,7 @@
 description: Record an AI behavior correction or preference into the wiki
 ---
 
-You are running `/hypo:feedback`. Capture a behavior correction or preference into `pages/feedback/` — the **single source of truth** for learned behaviors (ADR 0031 / fix #37).
+You are running `/hypo:feedback`. Capture a behavior correction or preference into `pages/feedback/` — the **single source of truth** for learned behaviors (ADR 0031).
 
 ## What this does
 

package/commands/resume.md

@@ -20,7 +20,7 @@ If the user named a project in the command invocation, use that. Otherwise, loca
 node <package-root>/scripts/resume.mjs [--hypo-dir="<path>"] [--project=<name>]
 ```
 
-The script will resolve the most recently active project from `hot.md` if `--project` is omitted.
+When `--project` is omitted, the script prefers the project whose `working_dir` contains the current directory (cwd-first); if nothing under the current directory matches, it falls back to the most recently active project from `hot.md`.
 
 ---
 

package/docs/ARCHITECTURE.md

@@ -80,7 +80,7 @@ The synthesis-heavy commands (`ingest`, `query`, `crystallize`, `lint`, `verify`
 
 ## Agent Skills
 
-`skills/<name>/SKILL.md` follows the Claude Agent Skills convention (per ADR `decisions/0001` in the wiki). When a conversation matches the skill's description, Claude auto-loads it without needing the slash command.
+`skills/<name>/SKILL.md` follows the Claude Agent Skills convention. When a conversation matches the skill's description, Claude auto-loads it without needing the slash command.
 
 > v1.0 originally planned flat `skills/*.md` files; v1.1 switched to `<name>/SKILL.md` for compatibility with the official Agent Skills loader.
 
@@ -179,7 +179,7 @@ Helpers used by command scripts only. Not deployed to hooks.
 │       ├── hot.md            ← project-level current state
 │       ├── session-state.md  ← next tasks + last session summary
 │       └── session-log/
-│           └── YYYY-MM.md    ← append-only monthly session log
+│           └── YYYY-MM-DD.md ← append-only daily session-log shard
 ├── journal/
 │   ├── daily/
 │   ├── weekly/
@@ -331,7 +331,7 @@ scripts/weekly-report.mjs                  ← aggregated weekly autonomy score
 journal/weekly/<YYYY-Www>.md               ← committed report (heuristic v0, spec §6.4 SoT)
 ```
 
-### Transcript dual-source (ADR 0019)
+### Transcript dual-source
 
 `session-audit.mjs` reads transcripts from two locations, in priority order:
 

package/docs/CONTRIBUTING.md

@@ -142,7 +142,7 @@ npm run fix:verify # Phase 1 of learned_behavior #6 — verifies fix #N status c
 When a test verifies behavior tied to a numbered fix in the wiki spec, add an anchor immediately above the `suite(...)` or `test(...)` call:
 
 ```js
-// @fix #25: replay-compact-guard-detects-slash-clear: /clear with incomplete wiki → WIKI_AUTOCLOSE
+// @fix #N: replay-compact-guard-detects-slash-clear: /clear with incomplete wiki → WIKI_AUTOCLOSE
 test('replay-compact-guard-detects-slash-clear: /clear with incomplete wiki → WIKI_AUTOCLOSE', () => { ... });
 ```
 
@@ -317,7 +317,7 @@ Major bumps must include an `upgrade.mjs` migration fixture in `tests/runner.mjs
 These documents live in the maintainer's personal wiki, not in this repo:
 
 - `~/hypomnema/projects/hypomnema/prd-v1.1.md` — current product requirements
-- `~/hypomnema/projects/hypomnema/decisions/0001..0014.md` — architecture decision records
+- `~/hypomnema/projects/hypomnema/decisions/*.md` — architecture decision records
 - `~/hypomnema/projects/hypomnema/design-history.md` — narrative design history
 - `~/hypomnema/projects/hypomnema/backlog-v1.0.md` — historical gap analysis (archived)
 - `~/hypomnema/projects/hypomnema/test-cases-v1.0.md` — historical QA spec (archived)

package/hooks/hypo-auto-minimal-crystallize.mjs

@@ -1,9 +1,10 @@
 #!/usr/bin/env node
 /**
- * hypo-auto-minimal-crystallize.mjs — Stop hook (fix #27 PR-C, ADR 0022 Layer 3)
+ * hypo-auto-minimal-crystallize.mjs — Stop hook (ADR 0022 Layer 3)
  *
  * Last hook in the Stop chain: a final-line defense that blocks `Stop` when
- * the current session performed mutation work but never produced a verified
+ * the current session did substantial work (mutation, or a high-volume
+ * read-only investigation — see step 3) but never produced a verified
  * session-close. Forces Claude to run minimal session-close before the
  * conversation context evaporates.
  *
@@ -11,8 +12,10 @@
  *
  *   1. stop_hook_active === true  → continue       (loop guard; PoC 2026-05-14)
  *   2. wiki absent                 → continue       (fail-open)
- *   3. transcript has zero Edit/Write/MultiEdit/NotebookEdit tool_use
- *                                  → continue       (substantial-session gate)
+ *   3. not a substantial session   → continue       (substantial-session gate)
+ *        substantial = ≥1 mutation tool_use, OR ≥5 read-only investigation
+ *        calls (Read/Grep/Glob/Bash) — 6a, so read-only review/debug sessions
+ *        are also nudged to close. Pure Q&A / incidental lookups still skip.
  *   4. no recent user close-intent → continue       (close-intent gate, see below)
  *   5. readSessionClosedMarker(session_id) valid
  *                                  → continue       (close already verified)
@@ -43,18 +46,19 @@ import { join } from 'path';
 import {
   HYPO_DIR,
   PKG_ROOT,
-  hasMutatingTranscriptActivity,
+  isSubstantialSession,
   readSessionClosedMarker,
   extractUserMessages,
   isClosePattern,
   isGateSkipped,
+  precompactGateStatus,
 } from './hypo-shared.mjs';
 
 function emitContinue() {
   console.log(JSON.stringify({ continue: true, suppressOutput: true }));
 }
 
-function emitBlock(sessionId, transcriptPath) {
+function emitBlock(sessionId, transcriptPath, gate = null) {
   // One-line, skill-first. /hypo:crystallize is the documented session-close
   // alias; passing --session-id there writes the per-session marker that clears
   // this block. CLI fallback + bypass live in commands/crystallize.md, not here
@@ -64,12 +68,39 @@ function emitBlock(sessionId, transcriptPath) {
   // coherence: a marker written without lint would only let Stop pass for
   // /compact to immediately re-block on the same errors).
   const transcriptHint = transcriptPath ? ` --transcript-path=${transcriptPath}` : '';
-  const reason = `[WIKI_AUTOCLOSE] session-close 미완료 — /hypo:crystallize 실행으로 마무리 (session_id=${sessionId}${transcriptHint}).`;
+  const markCmd = `crystallize --mark-session-closed --session-id=${sessionId}${transcriptHint}`;
+  // The log-only escape hatch for a non-project (wiki/tooling-only)
+  // session. Offered ONLY as an explicit alternative when a close blocker is
+  // present — never as the default recovery, so a real project session is not
+  // taught to bypass the ADR 0043 close invariant (codex design Finding 3).
+  const logOnlyCmd = `crystallize --mark-session-closed --log-only --session-id=${sessionId}${transcriptHint}`;
+  // ADR 0047: refine the message with the read-only /compact gate result.
+  // - gate green → the close is compact-ready and ONLY the marker is missing
+  //   (the hand-edit close case: files Written + committed directly, bypassing
+  //   the marker writer). Say so precisely + give the one command, instead of
+  //   the generic "미완료" that reads as "you never closed".
+  // - gate has blockers → surface them so the user fixes the real issue first.
+  // - gate null (tooling error/unavailable) → generic message (fail-open).
+  let reason;
+  if (gate && gate.ok) {
+    reason = `[WIKI_AUTOCLOSE] close gate green — only the session-closed marker is missing. Run \`${markCmd}\` to finish (session_id=${sessionId}).`;
+  } else if (gate && gate.blockers && gate.blockers.length > 0) {
+    const blockers = gate.blockers.map((b) => b.reason).join('; ');
+    reason = `[WIKI_AUTOCLOSE] session-close incomplete — resolve: ${blockers}. Then run \`${markCmd}\` (session_id=${sessionId}).`;
+    // Only when a project-close blocker is what's holding the session: a
+    // non-project session has nothing to close, so offer log-only as the way out
+    // (Claude decides whether this session is project-scoped — no auto-attribution).
+    if (gate.blockers.some((b) => b.type === 'close')) {
+      reason += ` If this was a non-project (wiki/tooling-only) session with no project to close, run \`${logOnlyCmd}\` instead (log-only close, no project attribution).`;
+    }
+  } else {
+    reason = `[WIKI_AUTOCLOSE] session-close 미완료 — /hypo:crystallize 실행으로 마무리 (session_id=${sessionId}${transcriptHint}).`;
+  }
   console.log(
     JSON.stringify({
       decision: 'block',
       reason,
-      stopReason: 'session-close incomplete (fix #27 PR-C / ADR 0022 Layer 3)',
+      stopReason: 'session-close incomplete (ADR 0022 Layer 3)',
     }),
   );
 }
@@ -112,8 +143,10 @@ process.stdin.on('end', () => {
     const sessionId = payload.session_id || payload.sessionId || null;
     const transcriptPath = payload.transcript_path || payload.transcriptPath || null;
 
-    // 3. substantial-session gate. Read-only / Q&A sessions skip the block.
-    if (!hasMutatingTranscriptActivity(transcriptPath)) {
+    // 3. substantial-session gate. Pure Q&A / incidental-lookup sessions skip
+    // the block; mutating sessions AND high-volume read-only investigations
+    // (6a) pass through to the close-intent gate.
+    if (!isSubstantialSession(transcriptPath)) {
       emitContinue();
       return;
     }
@@ -141,7 +174,20 @@ process.stdin.on('end', () => {
       return;
     }
 
-    emitBlock(sessionId, transcriptPath);
+    // ADR 0047: read-only /compact gate (same precompactGateStatus the real
+    // PreCompact hook uses) sharpens the block message — distinguishes "close
+    // is compact-ready, only the marker is missing" from "there are real
+    // blockers". The hook NEVER writes the marker here (file-header invariant);
+    // this is read-only. Any error → null → emitBlock falls back to the generic
+    // message (fail-open).
+    let gate = null;
+    try {
+      gate = precompactGateStatus(HYPO_DIR, transcriptPath ? { transcriptPath } : {});
+    } catch {
+      gate = null;
+    }
+
+    emitBlock(sessionId, transcriptPath, gate);
   } catch (err) {
     // Fail-open on any unexpected error.
     process.stderr.write(`[hypo-auto-minimal-crystallize] error: ${err?.message ?? String(err)}\n`);

package/hooks/hypo-compact-guard.mjs

@@ -2,7 +2,7 @@
 /**
  * hypo-compact-guard.mjs — UserPromptSubmit hook
  *
- * Scope: detects "/compact" or "/clear" typed in chat only (ADR 0022 Layer 2, fix #25).
+ * Scope: detects "/compact" or "/clear" typed in chat only (ADR 0022 Layer 2).
  * The CLI built-in /compact does NOT fire UserPromptSubmit — use personal-wiki-check.mjs
  * (PreCompact hook) as the hard gate for that path. /clear has no PreCompact event, so
  * this hook is the only chat-side gate that can prompt session-close before context wipe.

package/hooks/hypo-cwd-change.mjs

@@ -137,7 +137,7 @@ process.stdin.on('end', () => {
       return;
     }
 
-    // MISS: cwd matches no project. fix #23 / ADR 0023 — offer to create one
+    // MISS: cwd matches no project. ADR 0023 — offer to create one
     // when the trigger conditions hold. Same nudge-only model as session-start.
     let suggestPrefix = '';
     if (shouldSuggestProjectCreation(newCwd, HYPO_DIR)) {

package/hooks/hypo-first-prompt.mjs

@@ -3,9 +3,9 @@
  * hypo-first-prompt.mjs — UserPromptSubmit hook
  *
  * Consumes the marker written by hypo-session-start.mjs (source omitted /
- * 'session-start') or hypo-cwd-change.mjs (source 'cwd-change', fix #13).
+ * 'session-start') or hypo-cwd-change.mjs (source 'cwd-change').
  * On the FIRST user prompt after the marker is written, FORCES a one-line
- * resume summary into the reply (fix #3 — the old "answer only if related"
+ * resume summary into the reply (the old "answer only if related"
  * conditional is removed; the line is injected unconditionally).
  *
  * hot.md / session-state.md content is NOT re-injected here — the upstream

package/hooks/hypo-hot-rebuild.mjs

@@ -12,7 +12,12 @@
 
 import { readFileSync, writeFileSync, existsSync, mkdirSync } from 'fs';
 import { join } from 'path';
-import { HYPO_DIR, computeSessionGrowth, formatGrowthMetrics } from './hypo-shared.mjs';
+import {
+  HYPO_DIR,
+  computeSessionGrowth,
+  formatGrowthMetrics,
+  deriveRootLogEntries,
+} from './hypo-shared.mjs';
 
 const HOT_PATH = join(HYPO_DIR, 'hot.md');
 const GROWTH_CACHE = join(HYPO_DIR, '.cache', 'last-session-growth.json');
@@ -107,6 +112,14 @@ try {
 } catch (err) {
   process.stderr.write(`[hypo-hot-rebuild] error: ${err?.message ?? String(err)}\n`);
 }
+// Auto-derive the root log.md session entry from each project's session-log
+// heading (runs AFTER rebuild() so root hot.md is already fresh and isn't itself
+// counted as the project's open gate problem). Best-effort: own try/catch.
+try {
+  deriveRootLogEntries(HYPO_DIR);
+} catch (err) {
+  process.stderr.write(`[hypo-hot-rebuild] log-derive error: ${err?.message ?? String(err)}\n`);
+}
 try {
   emitGrowth();
 } catch (err) {