hypercore-storage 0.0.41 → 1.0.1

package/migrations/0/index.js

@@ -0,0 +1,628 @@
+const fs = require('fs')
+const path = require('path')
+const { Readable } = require('streamx')
+const b4a = require('b4a')
+const flat = require('flat-tree')
+const crypto = require('hypercore-crypto')
+const c = require('compact-encoding')
+const m = require('./messages.js')
+const View = require('../../lib/view.js')
+const { CorestoreTX, CoreTX, CorestoreRX } = require('../../lib/tx.js')
+
+const EMPTY_NODE = b4a.alloc(40)
+const EMPTY_PAGE = b4a.alloc(4096)
+
+class CoreListStream extends Readable {
+  constructor (storage) {
+    super()
+
+    this.storage = storage
+    this.stack = []
+  }
+
+  async _open (cb) {
+    for (const a of await readdir(path.join(this.storage, 'cores'))) {
+      for (const b of await readdir(path.join(this.storage, 'cores', a))) {
+        for (const dkey of await readdir(path.join(this.storage, 'cores', a, b))) {
+          this.stack.push(path.join(this.storage, 'cores', a, b, dkey))
+        }
+      }
+    }
+
+    cb(null)
+  }
+
+  async _read (cb) {
+    while (true) {
+      const next = this.stack.pop()
+      if (!next) {
+        this.push(null)
+        break
+      }
+
+      const oplog = path.join(next, 'oplog')
+      const result = await readOplog(oplog)
+      if (!result) continue
+
+      this.push(result)
+      break
+    }
+
+    cb(null)
+  }
+}
+
+function decodeOplogHeader (state) {
+  c.uint32.decode(state) // cksum, ignore for now
+
+  const l = c.uint32.decode(state)
+  const length = l >> 2
+  const headerBit = l & 1
+  const partialBit = l & 2
+
+  if (state.end - state.start < length) return null
+
+  const end = state.start + length
+  const result = { header: headerBit, partial: partialBit !== 0, byteLength: length + 8, message: null }
+
+  try {
+    result.message = m.oplog.header.decode({ start: state.start, end, buffer: state.buffer })
+  } catch {
+    return null
+  }
+
+  state.start = end
+  return result
+}
+
+function decodeOplogEntry (state) {
+  if (state.end - state.start < 8) return null
+
+  c.uint32.decode(state) // cksum, ignore for now
+
+  const l = c.uint32.decode(state)
+  const length = l >>> 2
+  const headerBit = l & 1
+  const partialBit = l & 2
+
+  if (state.end - state.start < length) return null
+
+  const end = state.start + length
+
+  const result = { header: headerBit, partial: partialBit !== 0, byteLength: length + 8, message: null }
+
+  try {
+    result.message = m.oplog.entry.decode({ start: state.start, end, buffer: state.buffer })
+  } catch {
+    return null
+  }
+
+  state.start = end
+
+  return result
+}
+
+module.exports = { store, core }
+
+async function store (storage, { version, dryRun = true, gc = true }) {
+  const stream = new CoreListStream(storage.path)
+  const view = new View()
+
+  const tx = new CorestoreTX(view)
+  const head = await storage._getHead(view)
+  const primaryKeyFile = path.join(storage.path, 'primary-key')
+
+  const primaryKey = await readFile(primaryKeyFile)
+
+  if (!head.seed) head.seed = primaryKey
+
+  for await (const data of stream) {
+    const key = data.header.key
+    const discoveryKey = crypto.discoveryKey(data.header.key)
+    const files = getFiles(data.path)
+
+    if (head.defaultDiscoveryKey === null) head.defaultDiscoveryKey = discoveryKey
+
+    const core = {
+      version: 0, // need later migration
+      corePointer: head.allocated.cores++,
+      dataPointer: head.allocated.datas++,
+      alias: null
+    }
+
+    const ptr = { version: 0, corePointer: core.corePointer, dataPointer: core.dataPointer, dependencies: [] }
+    const ctx = new CoreTX(ptr, storage.db, view, [])
+    const userData = new Map()
+    const treeNodes = new Map()
+
+    const auth = {
+      key,
+      discoveryKey,
+      manifest: data.header.manifest,
+      keyPair: data.header.keyPair,
+      encryptionKey: null
+    }
+
+    const tree = {
+      length: 0,
+      fork: 0,
+      rootHash: null,
+      signature: null
+    }
+
+    if (data.header.tree && data.header.tree.length) {
+      tree.length = data.header.tree.length
+      tree.fork = data.header.tree.fork
+      tree.rootHash = data.header.tree.rootHash
+      tree.signature = data.header.tree.signature
+    }
+
+    for (const { key, value } of data.header.userData) {
+      userData.set(key, value)
+    }
+
+    for (const e of data.entries) {
+      if (e.userData) userData.set(e.userData.key, e.userData.value)
+
+      if (e.treeNodes) {
+        for (const node of e.treeNodes) {
+          treeNodes.set(node.index, node)
+          ctx.putTreeNode(node)
+        }
+      }
+
+      if (e.treeUpgrade) {
+        if (e.treeUpgrade.ancestors !== tree.length) {
+          throw new Error('Unflushed truncations not migrate-able atm')
+        }
+
+        tree.length = e.treeUpgrade.length
+        tree.fork = e.treeUpgrade.fork
+        tree.rootHash = null
+        tree.signature = e.treeUpgrade.signature
+      }
+    }
+
+    if (userData.has('corestore/name') && userData.has('corestore/namespace')) {
+      core.alias = {
+        name: b4a.toString(userData.get('corestore/name')),
+        namespace: userData.get('corestore/namespace')
+      }
+      userData.delete('corestore/name')
+      userData.delete('corestore/namespace')
+    }
+
+    for (const [key, value] of userData) {
+      ctx.putUserData(key, value)
+    }
+
+    ctx.setAuth(auth)
+
+    const getTreeNode = (index) => (treeNodes.get(index) || getTreeNodeFromFile(files.tree, index))
+
+    if (tree.length) {
+      if (tree.rootHash === null) tree.rootHash = crypto.tree(await getRoots(tree.length, getTreeNode))
+      ctx.setHead(tree)
+    }
+
+    tx.putCore(discoveryKey, core)
+    if (core.alias) tx.putCoreByAlias(core.alias, discoveryKey)
+
+    await ctx.flush()
+  }
+
+  head.version = version
+  tx.setHead(head)
+  tx.apply()
+
+  if (dryRun) return
+
+  await View.flush(view.changes, storage.db)
+
+  if (gc) await rm(primaryKeyFile)
+}
+
+class Slicer {
+  constructor () {
+    this.buffer = null
+    this.offset = 0
+  }
+
+  get size () {
+    return this.buffer === null ? 0 : this.buffer.byteLength
+  }
+
+  push (data) {
+    if (this.buffer === null) this.buffer = data
+    else this.buffer = b4a.concat([this.buffer, data])
+    this.offset += data.byteLength
+  }
+
+  take (len) {
+    if (len <= this.size) {
+      const chunk = this.buffer.subarray(0, len)
+      this.buffer = this.buffer.subarray(len)
+      return chunk
+    }
+
+    return null
+  }
+}
+
+async function core (core, { version, dryRun = true, gc = true }) {
+  if (dryRun) return // dryRun mode not supported atm
+
+  const rx = core.read()
+
+  const promises = [rx.getAuth(), rx.getHead()]
+  rx.tryFlush()
+
+  const [auth, head] = await Promise.all(promises)
+
+  if (!auth) return
+
+  const dk = b4a.toString(auth.discoveryKey, 'hex')
+  const files = getFiles(path.join(core.store.path, 'cores', dk.slice(0, 2), dk.slice(2, 4), dk))
+
+  if (head === null || head.length === 0) {
+    if (gc) await runGC()
+    return // no data
+  }
+
+  const oplog = await readOplog(files.oplog)
+  if (!oplog) throw new Error('No oplog available')
+
+  const treeData = new Slicer()
+
+  let treeIndex = 0
+
+  if (await exists(files.tree)) {
+    for await (const data of fs.createReadStream(files.tree)) {
+      treeData.push(data)
+
+      const write = core.write()
+
+      while (true) {
+        const buf = treeData.take(40)
+        if (buf === null) break
+
+        const index = treeIndex++
+        if (b4a.equals(buf, EMPTY_NODE)) continue
+
+        write.putTreeNode(decodeTreeNode(index, buf))
+      }
+
+      await write.flush()
+    }
+  }
+
+  const buf = []
+  if (await exists(files.bitfield)) {
+    for await (const data of fs.createReadStream(files.bitfield)) {
+      buf.push(data)
+    }
+  }
+
+  let bitfield = b4a.concat(buf)
+  if (bitfield.byteLength & 4095) bitfield = b4a.concat([bitfield, b4a.alloc(4096 - (bitfield.byteLength & 4095))])
+
+  const pages = new Map()
+  const headerBits = new Map()
+
+  const roots = await getRoots(head.length, getTreeNode)
+
+  for (const e of oplog.entries) {
+    if (!e.bitfield) continue
+
+    for (let i = 0; i < e.bitfield.length; i++) {
+      headerBits.set(i + e.bitfield.start, !e.bitfield.drop)
+    }
+  }
+
+  let w = core.write()
+  for (const index of allBits(bitfield)) {
+    if (headerBits.get(index) === false) continue
+
+    setBitInPage(index)
+
+    const blk = await getBlockFromFile(files.data, index, roots, getTreeNode)
+
+    if (w.changes.length > 1024) {
+      await w.flush()
+      w = core.write()
+    }
+
+    w.putBlock(index, blk)
+  }
+
+  for (const [index, bit] of headerBits) {
+    if (!bit) continue
+
+    setBitInPage(index)
+
+    const blk = await getBlockFromFile(files.data, index, roots, getTreeNode)
+    w.putBlock(index, blk)
+  }
+
+  for (const [index, page] of pages) {
+    w.putBitfieldPage(index, b4a.from(page.buffer, page.byteOffset, page.byteLength))
+  }
+
+  await w.flush()
+
+  let contiguousLength = 0
+  for await (const data of core.createBlockStream()) {
+    if (data.index === contiguousLength) contiguousLength++
+    else break
+  }
+
+  if (contiguousLength) {
+    const w = core.write()
+    w.setHints({ contiguousLength })
+    await w.flush()
+  }
+
+  await commitCoreMigration(auth, core, version)
+
+  if (gc) await runGC()
+
+  async function runGC () {
+    await rm(files.path)
+    await rmdir(path.join(files.path, '..'))
+    await rmdir(path.join(files.path, '../..'))
+    await rmdir(path.join(core.store.path, 'cores'))
+  }
+
+  function setBitInPage (index) {
+    const n = index & 32767
+    const p = (index - n) / 32768
+
+    let page = pages.get(p)
+
+    if (!page) {
+      page = new Uint32Array(1024)
+      pages.set(p, page)
+    }
+
+    const o = n & 31
+    const b = (n - o) / 32
+    const v = 1 << o
+
+    page[b] |= v
+  }
+
+  function getTreeNode (index) {
+    const read = core.read()
+    const promise = read.getTreeNode(index)
+    read.tryFlush()
+    return promise
+  }
+}
+
+async function commitCoreMigration (auth, core, version) {
+  const view = new View()
+  const rx = new CorestoreRX(core.db, view)
+
+  const storeCorePromise = rx.getCore(auth.discoveryKey)
+  rx.tryFlush()
+
+  const storeCore = await storeCorePromise
+
+  storeCore.version = version
+
+  const tx = new CorestoreTX(view)
+
+  tx.putCore(auth.discoveryKey, storeCore)
+  tx.apply()
+
+  await View.flush(view.changes, core.db)
+}
+
+function getFiles (dir) {
+  return {
+    path: dir,
+    oplog: path.join(dir, 'oplog'),
+    data: path.join(dir, 'data'),
+    tree: path.join(dir, 'tree'),
+    bitfield: path.join(dir, 'bitfield')
+  }
+}
+
+async function getRoots (length, getTreeNode) {
+  const all = []
+  for (const index of flat.fullRoots(2 * length)) {
+    all.push(await getTreeNode(index))
+  }
+  return all
+}
+
+async function getBlockFromFile (file, index, roots, getTreeNode) {
+  const size = (await getTreeNode(2 * index)).size
+  const offset = await getByteOffset(2 * index, roots, getTreeNode)
+
+  return new Promise(function (resolve) {
+    readAll(file, size, offset, function (err, buf) {
+      if (err) return resolve(null)
+      resolve(buf)
+    })
+  })
+}
+
+async function getByteOffset (index, roots, getTreeNode) {
+  if (index === 0) return 0
+  if ((index & 1) === 1) index = flat.leftSpan(index)
+
+  let head = 0
+  let offset = 0
+
+  for (const node of roots) { // all async ticks happen once we find the root so safe
+    head += 2 * ((node.index - head) + 1)
+
+    if (index >= head) {
+      offset += node.size
+      continue
+    }
+
+    const ite = flat.iterator(node.index)
+
+    while (ite.index !== index) {
+      if (index < ite.index) {
+        ite.leftChild()
+      } else {
+        offset += (await getTreeNode(ite.leftChild())).size
+        ite.sibling()
+      }
+    }
+
+    return offset
+  }
+
+  throw new Error('Failed to find offset')
+}
+
+function decodeTreeNode (index, buf) {
+  return { index, size: c.decode(c.uint64, buf), hash: buf.subarray(8) }
+}
+
+async function getTreeNodeFromFile (file, index) {
+  return new Promise(function (resolve) {
+    readAll(file, 40, index * 40, function (err, buf) {
+      if (err) return resolve(null)
+      resolve(decodeTreeNode(index, buf))
+    })
+  })
+}
+
+function readAll (filename, length, pos, cb) {
+  const buf = b4a.alloc(length)
+
+  fs.open(filename, 'r', function (err, fd) {
+    if (err) return cb(err)
+
+    let offset = 0
+
+    fs.read(fd, buf, offset, buf.byteLength, pos, function loop (err, read) {
+      if (err) return done(err)
+      if (read === 0) return done(new Error('Partial read'))
+      offset += read
+      if (offset === buf.byteLength) return done(null, buf)
+      fs.read(fd, offset, buf.byteLength - offset, buf, pos + offset, loop)
+    })
+
+    function done (err, value) {
+      fs.close(fd, () => cb(err, value))
+    }
+  })
+}
+
+async function readdir (dir) {
+  try {
+    return await fs.promises.readdir(dir)
+  } catch {
+    return []
+  }
+}
+
+async function exists (file) {
+  try {
+    await fs.promises.stat(file)
+    return true
+  } catch {
+    return false
+  }
+}
+
+async function readFile (file) {
+  try {
+    return await fs.promises.readFile(file)
+  } catch {
+    return null
+  }
+}
+
+async function rm (dir) {
+  try {
+    await fs.promises.rm(dir, { recursive: true })
+  } catch {}
+}
+
+async function rmdir (dir) {
+  try {
+    await fs.promises.rmdir(dir)
+  } catch {}
+}
+
+function * allBits (buffer) {
+  for (let i = 0; i < buffer.byteLength; i += EMPTY_PAGE.byteLength) {
+    const page = buffer.subarray(i, i + EMPTY_NODE.byteLength)
+    if (b4a.equals(page, EMPTY_PAGE)) continue
+
+    const view = new Uint32Array(page.buffer, page.byteOffset, EMPTY_PAGE.byteLength / 4)
+
+    for (let j = 0; j < view.length; j++) {
+      const n = view[j]
+      if (n === 0) continue
+
+      for (let k = 0; k < 32; k++) {
+        const m = 1 << k
+        if (n & m) yield i * 8 + j * 32 + k
+      }
+    }
+  }
+}
+
+function readOplog (oplog) {
+  return new Promise(function (resolve) {
+    fs.readFile(oplog, function (err, buffer) {
+      if (err) return resolve(null)
+
+      const state = { start: 0, end: buffer.byteLength, buffer }
+      const headers = [1, 0]
+
+      const h1 = decodeOplogHeader(state)
+      state.start = 4096
+
+      const h2 = decodeOplogHeader(state)
+      state.start = 4096 * 2
+
+      if (!h1 && !h2) return resolve(null)
+
+      if (h1 && !h2) {
+        headers[0] = h1.header
+        headers[1] = h1.header
+      } else if (!h1 && h2) {
+        headers[0] = (h2.header + 1) & 1
+        headers[1] = h2.header
+      } else {
+        headers[0] = h1.header
+        headers[1] = h2.header
+      }
+
+      const header = (headers[0] + headers[1]) & 1
+      const result = { path: path.dirname(oplog), header: null, entries: [] }
+      const decoded = []
+
+      result.header = header ? h2.message : h1.message
+
+      if (result.header.external) {
+        throw new Error('External headers not migrate-able atm')
+      }
+
+      while (true) {
+        const entry = decodeOplogEntry(state)
+        if (!entry) break
+        if (entry.header !== header) break
+
+        decoded.push(entry)
+      }
+
+      while (decoded.length > 0 && decoded[decoded.length - 1].partial) decoded.pop()
+
+      for (const e of decoded) {
+        result.entries.push(e.message)
+      }
+
+      resolve(result)
+    })
+  })
+}