hungry-ghost-hive 0.21.5 → 0.21.6

package/dist/config/schema.d.ts

@@ -821,6 +821,13 @@ export declare const HiveConfigSchema: z.ZodObject<{
         story_similarity_threshold?: number | undefined;
     }>>;
 }, "strip", z.ZodTypeAny, {
+    agents: {
+        poll_interval: number;
+        max_retries: number;
+        checkpoint_threshold: number;
+        llm_timeout_ms: number;
+        llm_max_retries: number;
+    };
     qa: {
         quality_checks: string[];
         build_command: string;
@@ -830,13 +837,6 @@ export declare const HiveConfigSchema: z.ZodObject<{
             max_agents: number;
         } | undefined;
     };
-    agents: {
-        poll_interval: number;
-        max_retries: number;
-        checkpoint_threshold: number;
-        llm_timeout_ms: number;
-        llm_max_retries: number;
-    };
     scaling: {
         senior_capacity: number;
         junior_max_complexity: number;
@@ -922,6 +922,13 @@ export declare const HiveConfigSchema: z.ZodObject<{
         auth_token?: string | undefined;
     };
 }, {
+    agents?: {
+        poll_interval?: number | undefined;
+        max_retries?: number | undefined;
+        checkpoint_threshold?: number | undefined;
+        llm_timeout_ms?: number | undefined;
+        llm_max_retries?: number | undefined;
+    } | undefined;
     qa?: {
         quality_checks?: string[] | undefined;
         build_command?: string | undefined;
@@ -931,13 +938,6 @@ export declare const HiveConfigSchema: z.ZodObject<{
             max_agents?: number | undefined;
         } | undefined;
     } | undefined;
-    agents?: {
-        poll_interval?: number | undefined;
-        max_retries?: number | undefined;
-        checkpoint_threshold?: number | undefined;
-        llm_timeout_ms?: number | undefined;
-        llm_max_retries?: number | undefined;
-    } | undefined;
     scaling?: {
         senior_capacity?: number | undefined;
         junior_max_complexity?: number | undefined;

package/dist/db/client.d.ts.map

@@ -1 +1 @@
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package/dist/db/client.js

@@ -1,8 +1,8 @@
 // Licensed under the Hungry Ghost Hive License. See LICENSE.
-import { existsSync, readFileSync, writeFileSync } from 'fs';
+import { copyFileSync, existsSync, readFileSync, statSync, writeFileSync } from 'fs';
 import { join } from 'path';
 import initSqlJs from 'sql.js';
-import { InitializationError } from '../errors/index.js';
+import { DatabaseCorruptionError, InitializationError } from '../errors/index.js';
 // Embedded initial migration SQL
 const INITIAL_MIGRATION = `
 -- Hive Orchestrator Initial Schema
@@ -150,29 +150,83 @@ async function getSqlJs() {
     }
     return SQL;
 }
+// Minimum file size (in bytes) that indicates a database had meaningful data.
+// Files below this threshold are likely new or schema-only databases.
+const CORRUPTION_CHECK_MIN_FILE_SIZE = 50 * 1024; // 50KB
+// Core tables that should have rows in a populated database
+const CORE_TABLES = ['teams', 'agents', 'stories'];
+/**
+ * Validate that a loaded database is not a silently-corrupted empty copy.
+ * If the source file was large (>50KB) but the loaded DB has core tables
+ * with zero rows, that indicates sql.js silently returned an empty DB.
+ */
+function validateLoadedDatabase(db, fileSize) {
+    if (fileSize < CORRUPTION_CHECK_MIN_FILE_SIZE) {
+        return; // Small file — likely a new or schema-only DB, skip validation
+    }
+    // Check if any core table has data
+    for (const table of CORE_TABLES) {
+        try {
+            const result = db.exec(`SELECT COUNT(*) FROM ${table}`);
+            if (result.length > 0 && result[0].values[0][0] > 0) {
+                return; // At least one core table has data — DB looks valid
+            }
+        }
+        catch {
+            // Table doesn't exist yet — that's fine, migrations haven't run
+            continue;
+        }
+    }
+    // File was large but all core tables are empty — likely corruption
+    throw new DatabaseCorruptionError(`Database file is ${fileSize} bytes but loaded with zero rows in core tables (${CORE_TABLES.join(', ')}). ` +
+        'This likely indicates a corrupted or partially-read database file. ' +
+        'Refusing to proceed to prevent data loss. Check the backup at hive.db.bak if available.');
+}
 export async function createDatabase(dbPath) {
     const SqlJs = await getSqlJs();
     if (!SqlJs)
         throw new InitializationError('Failed to initialize sql.js');
     let db;
+    const backupPath = dbPath + '.bak';
     // Load existing database or create new one
     if (existsSync(dbPath)) {
         const buffer = readFileSync(dbPath);
-        db = new SqlJs.Database(buffer);
+        const fileSize = statSync(dbPath).size;
+        try {
+            db = new SqlJs.Database(buffer);
+            // Verify the database is usable by running a basic command
+            db.run('PRAGMA foreign_keys = ON');
+            db.exec('SELECT 1');
+        }
+        catch (error) {
+            throw new DatabaseCorruptionError(`Failed to load database file at ${dbPath}: ${error instanceof Error ? error.message : String(error)}`);
+        }
+        // Validate the loaded DB is not silently empty from a corrupt file
+        validateLoadedDatabase(db, fileSize);
+        // Run migrations on loaded DB — wrap in try-catch to detect subtle corruption
+        try {
+            runMigrations(db);
+        }
+        catch (error) {
+            throw new DatabaseCorruptionError(`Database file at ${dbPath} appears corrupted (migrations failed): ${error instanceof Error ? error.message : String(error)}`);
+        }
     }
     else {
         db = new SqlJs.Database();
+        // Enable foreign keys
+        db.run('PRAGMA foreign_keys = ON');
+        // Run migrations on new DB
+        runMigrations(db);
     }
-    // Enable foreign keys
-    db.run('PRAGMA foreign_keys = ON');
     const save = () => {
+        // Write backup before overwriting the main database file
+        if (existsSync(dbPath)) {
+            copyFileSync(dbPath, backupPath);
+        }
         const data = db.export();
         const buffer = Buffer.from(data);
         writeFileSync(dbPath, buffer);
     };
-    // Auto-run migrations
-    runMigrations(db);
-    save();
     const client = {
         db,
         close: () => {

package/dist/db/client.js.map

@@ -1 +1 @@
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package/dist/db/client.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=client.test.d.ts.map

package/dist/db/client.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"client.test.d.ts","sourceRoot":"","sources":["../../src/db/client.test.ts"],"names":[],"mappings":""}

package/dist/db/client.test.js

@@ -0,0 +1,223 @@
+import { existsSync, mkdtempSync, readFileSync, rmSync, writeFileSync } from 'fs';
+import { tmpdir } from 'os';
+import { join } from 'path';
+import initSqlJs from 'sql.js';
+import { afterEach, beforeEach, describe, expect, it } from 'vitest';
+import { DatabaseCorruptionError } from '../errors/index.js';
+import { createDatabase } from './client.js';
+/**
+ * Helper to create a valid SQLite database buffer with the core schema
+ * that is compatible with runMigrations().
+ */
+async function createValidDbBuffer(opts = {}) {
+    const SQL = await initSqlJs();
+    const db = new SQL.Database();
+    // Use a schema that matches the initial migration so runMigrations works
+    db.run(`
+    CREATE TABLE IF NOT EXISTS teams (
+      id TEXT PRIMARY KEY, repo_url TEXT NOT NULL, repo_path TEXT NOT NULL,
+      name TEXT NOT NULL, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS agents (
+      id TEXT PRIMARY KEY,
+      type TEXT NOT NULL CHECK (type IN ('tech_lead', 'senior', 'intermediate', 'junior', 'qa')),
+      team_id TEXT REFERENCES teams(id), tmux_session TEXT, model TEXT,
+      status TEXT DEFAULT 'idle' CHECK (status IN ('idle', 'working', 'blocked', 'terminated')),
+      current_story_id TEXT, memory_state TEXT, last_seen TIMESTAMP, worktree_path TEXT,
+      created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, updated_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS requirements (
+      id TEXT PRIMARY KEY, title TEXT NOT NULL, description TEXT NOT NULL,
+      submitted_by TEXT DEFAULT 'human',
+      status TEXT DEFAULT 'pending' CHECK (status IN ('pending', 'planning', 'planned', 'in_progress', 'completed')),
+      godmode BOOLEAN DEFAULT 0, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS stories (
+      id TEXT PRIMARY KEY, requirement_id TEXT REFERENCES requirements(id),
+      team_id TEXT REFERENCES teams(id), title TEXT NOT NULL, description TEXT NOT NULL,
+      acceptance_criteria TEXT,
+      complexity_score INTEGER CHECK (complexity_score BETWEEN 1 AND 13),
+      story_points INTEGER,
+      status TEXT DEFAULT 'draft' CHECK (status IN ('draft','estimated','planned','in_progress','review','qa','qa_failed','pr_submitted','merged')),
+      assigned_agent_id TEXT REFERENCES agents(id), branch_name TEXT, pr_url TEXT,
+      created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, updated_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS story_dependencies (
+      story_id TEXT REFERENCES stories(id), depends_on_story_id TEXT REFERENCES stories(id),
+      PRIMARY KEY (story_id, depends_on_story_id)
+    );
+    CREATE TABLE IF NOT EXISTS agent_logs (
+      id INTEGER PRIMARY KEY AUTOINCREMENT, agent_id TEXT NOT NULL REFERENCES agents(id),
+      story_id TEXT REFERENCES stories(id), event_type TEXT NOT NULL, status TEXT,
+      message TEXT, metadata TEXT, timestamp TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE INDEX IF NOT EXISTS idx_agent_logs_agent ON agent_logs(agent_id);
+    CREATE INDEX IF NOT EXISTS idx_agent_logs_story ON agent_logs(story_id);
+    CREATE INDEX IF NOT EXISTS idx_agent_logs_timestamp ON agent_logs(timestamp);
+    CREATE TABLE IF NOT EXISTS escalations (
+      id TEXT PRIMARY KEY, story_id TEXT REFERENCES stories(id),
+      from_agent_id TEXT REFERENCES agents(id), to_agent_id TEXT REFERENCES agents(id),
+      reason TEXT NOT NULL,
+      status TEXT DEFAULT 'pending' CHECK (status IN ('pending', 'acknowledged', 'resolved')),
+      resolution TEXT, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, resolved_at TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS pull_requests (
+      id TEXT PRIMARY KEY, story_id TEXT REFERENCES stories(id), team_id TEXT REFERENCES teams(id),
+      branch_name TEXT NOT NULL, github_pr_number INTEGER, github_pr_url TEXT,
+      submitted_by TEXT, reviewed_by TEXT,
+      status TEXT DEFAULT 'queued' CHECK (status IN ('queued','reviewing','approved','merged','rejected','closed')),
+      review_notes TEXT, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+      updated_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, reviewed_at TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS messages (
+      id TEXT PRIMARY KEY, from_session TEXT NOT NULL, to_session TEXT NOT NULL,
+      subject TEXT, body TEXT NOT NULL, reply TEXT,
+      status TEXT DEFAULT 'pending' CHECK (status IN ('pending', 'read', 'replied')),
+      created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, replied_at TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS migrations (
+      id INTEGER PRIMARY KEY AUTOINCREMENT, name TEXT NOT NULL UNIQUE,
+      applied_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    INSERT INTO migrations (name) VALUES ('001-initial.sql');
+    INSERT INTO migrations (name) VALUES ('002-add-agent-model.sql');
+    INSERT INTO migrations (name) VALUES ('003-fix-pull-requests.sql');
+    INSERT INTO migrations (name) VALUES ('004-add-messages.sql');
+    INSERT INTO migrations (name) VALUES ('005-add-agent-last-seen.sql');
+    INSERT INTO migrations (name) VALUES ('006-add-agent-worktree.sql');
+    INSERT INTO migrations (name) VALUES ('007-add-indexes.sql');
+    INSERT INTO migrations (name) VALUES ('008-add-godmode.sql');
+    INSERT INTO migrations (name) VALUES ('009-add-pr-sync-indexes.sql');
+  `);
+    if (opts.withData) {
+        db.run("INSERT INTO teams VALUES ('t1', 'https://example.com', '/tmp/repo', 'Test Team', datetime('now'))");
+    }
+    if (opts.withPadding) {
+        db.run('CREATE TABLE IF NOT EXISTS padding (id INTEGER PRIMARY KEY, data TEXT)');
+        for (let i = 0; i < 500; i++) {
+            db.run('INSERT INTO padding VALUES (?, ?)', [i, 'x'.repeat(100)]);
+        }
+    }
+    const data = db.export();
+    db.close();
+    return data;
+}
+describe('createDatabase', () => {
+    let tempDir;
+    beforeEach(() => {
+        tempDir = mkdtempSync(join(tmpdir(), 'hive-db-test-'));
+    });
+    afterEach(() => {
+        rmSync(tempDir, { recursive: true, force: true });
+    });
+    it('should create a new database when no file exists', async () => {
+        const dbPath = join(tempDir, 'new.db');
+        const client = await createDatabase(dbPath);
+        expect(client.db).toBeDefined();
+        // New database should not auto-save to disk
+        expect(existsSync(dbPath)).toBe(false);
+        client.close();
+    });
+    it('should load an existing valid database file', async () => {
+        const dbPath = join(tempDir, 'existing.db');
+        const data = await createValidDbBuffer({ withData: true });
+        writeFileSync(dbPath, Buffer.from(data));
+        const client = await createDatabase(dbPath);
+        const result = client.db.exec('SELECT COUNT(*) FROM teams');
+        expect(result[0].values[0][0]).toBe(1);
+        client.close();
+    });
+    it('should throw DatabaseCorruptionError when sql.js fails to parse buffer', async () => {
+        const dbPath = join(tempDir, 'corrupt.db');
+        // Write garbage data that is not valid SQLite
+        const garbageBuffer = Buffer.alloc(100);
+        garbageBuffer.write('NOT_A_SQLITE_DATABASE', 0);
+        writeFileSync(dbPath, garbageBuffer);
+        await expect(createDatabase(dbPath)).rejects.toThrow(DatabaseCorruptionError);
+        await expect(createDatabase(dbPath)).rejects.toThrow('Failed to load database file');
+    });
+    it('should detect corruption when large file loads with empty core tables', async () => {
+        const dbPath = join(tempDir, 'wiped.db');
+        // Create a large database with padding but NO data in core tables
+        const data = await createValidDbBuffer({ withData: false, withPadding: true });
+        writeFileSync(dbPath, Buffer.from(data));
+        // Verify the file is >50KB
+        expect(Buffer.from(data).length).toBeGreaterThan(50 * 1024);
+        await expect(createDatabase(dbPath)).rejects.toThrow(DatabaseCorruptionError);
+        await expect(createDatabase(dbPath)).rejects.toThrow('zero rows in core tables');
+    });
+    it('should NOT flag corruption when file is small (<50KB)', async () => {
+        const dbPath = join(tempDir, 'small-empty.db');
+        // Create an empty database (no tables yet — migrations will handle it)
+        const SQL = await initSqlJs();
+        const smallDb = new SQL.Database();
+        const data = smallDb.export();
+        smallDb.close();
+        writeFileSync(dbPath, Buffer.from(data));
+        // Verify the file is <50KB
+        expect(Buffer.from(data).length).toBeLessThan(50 * 1024);
+        // Should pass — small file skips corruption check, migrations create schema
+        const client = await createDatabase(dbPath);
+        expect(client.db).toBeDefined();
+        client.close();
+    });
+    it('should NOT flag corruption when large file has data in core tables', async () => {
+        const dbPath = join(tempDir, 'large-valid.db');
+        // Create a large database WITH data in core tables
+        const data = await createValidDbBuffer({ withData: true, withPadding: true });
+        writeFileSync(dbPath, Buffer.from(data));
+        expect(Buffer.from(data).length).toBeGreaterThan(50 * 1024);
+        // Should pass — core table has data
+        const client = await createDatabase(dbPath);
+        expect(client.db).toBeDefined();
+        client.close();
+    });
+    describe('save() backup behavior', () => {
+        it('should create a backup file before saving', async () => {
+            const dbPath = join(tempDir, 'backup-test.db');
+            const backupPath = dbPath + '.bak';
+            const client = await createDatabase(dbPath);
+            client.save(); // First save — creates the file, no prior file to back up
+            expect(existsSync(dbPath)).toBe(true);
+            // Save again — now a backup should be created from the existing file
+            client.save();
+            expect(existsSync(backupPath)).toBe(true);
+            client.close();
+        });
+        it('should preserve backup content from the previous version', async () => {
+            const dbPath = join(tempDir, 'backup-content.db');
+            const backupPath = dbPath + '.bak';
+            const client = await createDatabase(dbPath);
+            client.db.run('CREATE TABLE IF NOT EXISTS test_data (val TEXT)');
+            client.save(); // version 1
+            const firstSaveContent = readFileSync(dbPath);
+            // Modify and save again — version 2
+            client.db.run("INSERT INTO test_data VALUES ('version2')");
+            client.save();
+            // Backup should contain version 1's content
+            const backupContent = readFileSync(backupPath);
+            expect(backupContent).toEqual(firstSaveContent);
+            client.close();
+        });
+    });
+    describe('auto-save removal', () => {
+        it('should NOT auto-save after initialization of a new database', async () => {
+            const dbPath = join(tempDir, 'no-autosave.db');
+            await createDatabase(dbPath);
+            // File should NOT exist because we removed the auto-save on init
+            expect(existsSync(dbPath)).toBe(false);
+        });
+        it('should NOT auto-save when loading an existing database', async () => {
+            const dbPath = join(tempDir, 'no-autosave-existing.db');
+            const data = await createValidDbBuffer({ withData: true });
+            writeFileSync(dbPath, Buffer.from(data));
+            const originalContent = readFileSync(dbPath);
+            // Loading should not modify the file on disk
+            const client = await createDatabase(dbPath);
+            const afterLoadContent = readFileSync(dbPath);
+            expect(afterLoadContent).toEqual(originalContent);
+            client.close();
+        });
+    });
+});
+//# sourceMappingURL=client.test.js.map

package/dist/db/client.test.js.map

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package/dist/errors/index.d.ts

@@ -59,6 +59,12 @@ export declare class TimeoutError extends HiveError {
 export declare class NotFoundError extends HiveError {
     constructor(message: string);
 }
+/**
+ * Database corruption errors (empty DB loaded from non-empty file, parse failures)
+ */
+export declare class DatabaseCorruptionError extends HiveError {
+    constructor(message: string);
+}
 /**
  * Helper function to convert generic errors to Hive errors
  */

package/dist/errors/index.d.ts.map

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package/dist/errors/index.js

@@ -92,6 +92,15 @@ export class NotFoundError extends HiveError {
         Object.setPrototypeOf(this, NotFoundError.prototype);
     }
 }
+/**
+ * Database corruption errors (empty DB loaded from non-empty file, parse failures)
+ */
+export class DatabaseCorruptionError extends HiveError {
+    constructor(message) {
+        super(message, 'DATABASE_CORRUPTION_ERROR');
+        Object.setPrototypeOf(this, DatabaseCorruptionError.prototype);
+    }
+}
 /**
  * Helper function to convert generic errors to Hive errors
  */

package/dist/errors/index.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "hungry-ghost-hive",
-  "version": "0.21.5",
+  "version": "0.21.6",
   "description": "AI Agent Orchestrator - Manages agile software development teams of AI agents",
   "type": "module",
   "bin": {

package/src/db/client.test.ts

@@ -0,0 +1,276 @@
+import { existsSync, mkdtempSync, readFileSync, rmSync, writeFileSync } from 'fs';
+import { tmpdir } from 'os';
+import { join } from 'path';
+import initSqlJs from 'sql.js';
+import { afterEach, beforeEach, describe, expect, it } from 'vitest';
+import { DatabaseCorruptionError } from '../errors/index.js';
+import { createDatabase } from './client.js';
+
+/**
+ * Helper to create a valid SQLite database buffer with the core schema
+ * that is compatible with runMigrations().
+ */
+async function createValidDbBuffer(
+  opts: { withData?: boolean; withPadding?: boolean } = {}
+): Promise<Uint8Array> {
+  const SQL = await initSqlJs();
+  const db = new SQL.Database();
+
+  // Use a schema that matches the initial migration so runMigrations works
+  db.run(`
+    CREATE TABLE IF NOT EXISTS teams (
+      id TEXT PRIMARY KEY, repo_url TEXT NOT NULL, repo_path TEXT NOT NULL,
+      name TEXT NOT NULL, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS agents (
+      id TEXT PRIMARY KEY,
+      type TEXT NOT NULL CHECK (type IN ('tech_lead', 'senior', 'intermediate', 'junior', 'qa')),
+      team_id TEXT REFERENCES teams(id), tmux_session TEXT, model TEXT,
+      status TEXT DEFAULT 'idle' CHECK (status IN ('idle', 'working', 'blocked', 'terminated')),
+      current_story_id TEXT, memory_state TEXT, last_seen TIMESTAMP, worktree_path TEXT,
+      created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, updated_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS requirements (
+      id TEXT PRIMARY KEY, title TEXT NOT NULL, description TEXT NOT NULL,
+      submitted_by TEXT DEFAULT 'human',
+      status TEXT DEFAULT 'pending' CHECK (status IN ('pending', 'planning', 'planned', 'in_progress', 'completed')),
+      godmode BOOLEAN DEFAULT 0, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS stories (
+      id TEXT PRIMARY KEY, requirement_id TEXT REFERENCES requirements(id),
+      team_id TEXT REFERENCES teams(id), title TEXT NOT NULL, description TEXT NOT NULL,
+      acceptance_criteria TEXT,
+      complexity_score INTEGER CHECK (complexity_score BETWEEN 1 AND 13),
+      story_points INTEGER,
+      status TEXT DEFAULT 'draft' CHECK (status IN ('draft','estimated','planned','in_progress','review','qa','qa_failed','pr_submitted','merged')),
+      assigned_agent_id TEXT REFERENCES agents(id), branch_name TEXT, pr_url TEXT,
+      created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, updated_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS story_dependencies (
+      story_id TEXT REFERENCES stories(id), depends_on_story_id TEXT REFERENCES stories(id),
+      PRIMARY KEY (story_id, depends_on_story_id)
+    );
+    CREATE TABLE IF NOT EXISTS agent_logs (
+      id INTEGER PRIMARY KEY AUTOINCREMENT, agent_id TEXT NOT NULL REFERENCES agents(id),
+      story_id TEXT REFERENCES stories(id), event_type TEXT NOT NULL, status TEXT,
+      message TEXT, metadata TEXT, timestamp TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    CREATE INDEX IF NOT EXISTS idx_agent_logs_agent ON agent_logs(agent_id);
+    CREATE INDEX IF NOT EXISTS idx_agent_logs_story ON agent_logs(story_id);
+    CREATE INDEX IF NOT EXISTS idx_agent_logs_timestamp ON agent_logs(timestamp);
+    CREATE TABLE IF NOT EXISTS escalations (
+      id TEXT PRIMARY KEY, story_id TEXT REFERENCES stories(id),
+      from_agent_id TEXT REFERENCES agents(id), to_agent_id TEXT REFERENCES agents(id),
+      reason TEXT NOT NULL,
+      status TEXT DEFAULT 'pending' CHECK (status IN ('pending', 'acknowledged', 'resolved')),
+      resolution TEXT, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, resolved_at TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS pull_requests (
+      id TEXT PRIMARY KEY, story_id TEXT REFERENCES stories(id), team_id TEXT REFERENCES teams(id),
+      branch_name TEXT NOT NULL, github_pr_number INTEGER, github_pr_url TEXT,
+      submitted_by TEXT, reviewed_by TEXT,
+      status TEXT DEFAULT 'queued' CHECK (status IN ('queued','reviewing','approved','merged','rejected','closed')),
+      review_notes TEXT, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+      updated_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, reviewed_at TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS messages (
+      id TEXT PRIMARY KEY, from_session TEXT NOT NULL, to_session TEXT NOT NULL,
+      subject TEXT, body TEXT NOT NULL, reply TEXT,
+      status TEXT DEFAULT 'pending' CHECK (status IN ('pending', 'read', 'replied')),
+      created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP, replied_at TIMESTAMP
+    );
+    CREATE TABLE IF NOT EXISTS migrations (
+      id INTEGER PRIMARY KEY AUTOINCREMENT, name TEXT NOT NULL UNIQUE,
+      applied_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP
+    );
+    INSERT INTO migrations (name) VALUES ('001-initial.sql');
+    INSERT INTO migrations (name) VALUES ('002-add-agent-model.sql');
+    INSERT INTO migrations (name) VALUES ('003-fix-pull-requests.sql');
+    INSERT INTO migrations (name) VALUES ('004-add-messages.sql');
+    INSERT INTO migrations (name) VALUES ('005-add-agent-last-seen.sql');
+    INSERT INTO migrations (name) VALUES ('006-add-agent-worktree.sql');
+    INSERT INTO migrations (name) VALUES ('007-add-indexes.sql');
+    INSERT INTO migrations (name) VALUES ('008-add-godmode.sql');
+    INSERT INTO migrations (name) VALUES ('009-add-pr-sync-indexes.sql');
+  `);
+
+  if (opts.withData) {
+    db.run(
+      "INSERT INTO teams VALUES ('t1', 'https://example.com', '/tmp/repo', 'Test Team', datetime('now'))"
+    );
+  }
+
+  if (opts.withPadding) {
+    db.run('CREATE TABLE IF NOT EXISTS padding (id INTEGER PRIMARY KEY, data TEXT)');
+    for (let i = 0; i < 500; i++) {
+      db.run('INSERT INTO padding VALUES (?, ?)', [i, 'x'.repeat(100)]);
+    }
+  }
+
+  const data = db.export();
+  db.close();
+  return data;
+}
+
+describe('createDatabase', () => {
+  let tempDir: string;
+
+  beforeEach(() => {
+    tempDir = mkdtempSync(join(tmpdir(), 'hive-db-test-'));
+  });
+
+  afterEach(() => {
+    rmSync(tempDir, { recursive: true, force: true });
+  });
+
+  it('should create a new database when no file exists', async () => {
+    const dbPath = join(tempDir, 'new.db');
+    const client = await createDatabase(dbPath);
+
+    expect(client.db).toBeDefined();
+    // New database should not auto-save to disk
+    expect(existsSync(dbPath)).toBe(false);
+
+    client.close();
+  });
+
+  it('should load an existing valid database file', async () => {
+    const dbPath = join(tempDir, 'existing.db');
+
+    const data = await createValidDbBuffer({ withData: true });
+    writeFileSync(dbPath, Buffer.from(data));
+
+    const client = await createDatabase(dbPath);
+    const result = client.db.exec('SELECT COUNT(*) FROM teams');
+    expect(result[0].values[0][0]).toBe(1);
+
+    client.close();
+  });
+
+  it('should throw DatabaseCorruptionError when sql.js fails to parse buffer', async () => {
+    const dbPath = join(tempDir, 'corrupt.db');
+
+    // Write garbage data that is not valid SQLite
+    const garbageBuffer = Buffer.alloc(100);
+    garbageBuffer.write('NOT_A_SQLITE_DATABASE', 0);
+    writeFileSync(dbPath, garbageBuffer);
+
+    await expect(createDatabase(dbPath)).rejects.toThrow(DatabaseCorruptionError);
+    await expect(createDatabase(dbPath)).rejects.toThrow('Failed to load database file');
+  });
+
+  it('should detect corruption when large file loads with empty core tables', async () => {
+    const dbPath = join(tempDir, 'wiped.db');
+
+    // Create a large database with padding but NO data in core tables
+    const data = await createValidDbBuffer({ withData: false, withPadding: true });
+    writeFileSync(dbPath, Buffer.from(data));
+
+    // Verify the file is >50KB
+    expect(Buffer.from(data).length).toBeGreaterThan(50 * 1024);
+
+    await expect(createDatabase(dbPath)).rejects.toThrow(DatabaseCorruptionError);
+    await expect(createDatabase(dbPath)).rejects.toThrow('zero rows in core tables');
+  });
+
+  it('should NOT flag corruption when file is small (<50KB)', async () => {
+    const dbPath = join(tempDir, 'small-empty.db');
+
+    // Create an empty database (no tables yet — migrations will handle it)
+    const SQL = await initSqlJs();
+    const smallDb = new SQL.Database();
+    const data = smallDb.export();
+    smallDb.close();
+    writeFileSync(dbPath, Buffer.from(data));
+
+    // Verify the file is <50KB
+    expect(Buffer.from(data).length).toBeLessThan(50 * 1024);
+
+    // Should pass — small file skips corruption check, migrations create schema
+    const client = await createDatabase(dbPath);
+    expect(client.db).toBeDefined();
+    client.close();
+  });
+
+  it('should NOT flag corruption when large file has data in core tables', async () => {
+    const dbPath = join(tempDir, 'large-valid.db');
+
+    // Create a large database WITH data in core tables
+    const data = await createValidDbBuffer({ withData: true, withPadding: true });
+    writeFileSync(dbPath, Buffer.from(data));
+
+    expect(Buffer.from(data).length).toBeGreaterThan(50 * 1024);
+
+    // Should pass — core table has data
+    const client = await createDatabase(dbPath);
+    expect(client.db).toBeDefined();
+    client.close();
+  });
+
+  describe('save() backup behavior', () => {
+    it('should create a backup file before saving', async () => {
+      const dbPath = join(tempDir, 'backup-test.db');
+      const backupPath = dbPath + '.bak';
+
+      const client = await createDatabase(dbPath);
+      client.save(); // First save — creates the file, no prior file to back up
+
+      expect(existsSync(dbPath)).toBe(true);
+
+      // Save again — now a backup should be created from the existing file
+      client.save();
+      expect(existsSync(backupPath)).toBe(true);
+
+      client.close();
+    });
+
+    it('should preserve backup content from the previous version', async () => {
+      const dbPath = join(tempDir, 'backup-content.db');
+      const backupPath = dbPath + '.bak';
+
+      const client = await createDatabase(dbPath);
+      client.db.run('CREATE TABLE IF NOT EXISTS test_data (val TEXT)');
+      client.save(); // version 1
+
+      const firstSaveContent = readFileSync(dbPath);
+
+      // Modify and save again — version 2
+      client.db.run("INSERT INTO test_data VALUES ('version2')");
+      client.save();
+
+      // Backup should contain version 1's content
+      const backupContent = readFileSync(backupPath);
+      expect(backupContent).toEqual(firstSaveContent);
+
+      client.close();
+    });
+  });
+
+  describe('auto-save removal', () => {
+    it('should NOT auto-save after initialization of a new database', async () => {
+      const dbPath = join(tempDir, 'no-autosave.db');
+
+      await createDatabase(dbPath);
+
+      // File should NOT exist because we removed the auto-save on init
+      expect(existsSync(dbPath)).toBe(false);
+    });
+
+    it('should NOT auto-save when loading an existing database', async () => {
+      const dbPath = join(tempDir, 'no-autosave-existing.db');
+
+      const data = await createValidDbBuffer({ withData: true });
+      writeFileSync(dbPath, Buffer.from(data));
+
+      const originalContent = readFileSync(dbPath);
+
+      // Loading should not modify the file on disk
+      const client = await createDatabase(dbPath);
+
+      const afterLoadContent = readFileSync(dbPath);
+      expect(afterLoadContent).toEqual(originalContent);
+
+      client.close();
+    });
+  });
+});

package/src/db/client.ts

@@ -1,9 +1,9 @@
 // Licensed under the Hungry Ghost Hive License. See LICENSE.
 
-import { existsSync, readFileSync, writeFileSync } from 'fs';
+import { copyFileSync, existsSync, readFileSync, statSync, writeFileSync } from 'fs';
 import { join } from 'path';
 import initSqlJs, { Database as SqlJsDatabase } from 'sql.js';
-import { InitializationError } from '../errors/index.js';
+import { DatabaseCorruptionError, InitializationError } from '../errors/index.js';
 
 export interface DatabaseClient {
   db: SqlJsDatabase;
@@ -162,33 +162,96 @@ async function getSqlJs(): Promise<typeof SQL> {
   return SQL;
 }
 
+// Minimum file size (in bytes) that indicates a database had meaningful data.
+// Files below this threshold are likely new or schema-only databases.
+const CORRUPTION_CHECK_MIN_FILE_SIZE = 50 * 1024; // 50KB
+
+// Core tables that should have rows in a populated database
+const CORE_TABLES = ['teams', 'agents', 'stories'];
+
+/**
+ * Validate that a loaded database is not a silently-corrupted empty copy.
+ * If the source file was large (>50KB) but the loaded DB has core tables
+ * with zero rows, that indicates sql.js silently returned an empty DB.
+ */
+function validateLoadedDatabase(db: SqlJsDatabase, fileSize: number): void {
+  if (fileSize < CORRUPTION_CHECK_MIN_FILE_SIZE) {
+    return; // Small file — likely a new or schema-only DB, skip validation
+  }
+
+  // Check if any core table has data
+  for (const table of CORE_TABLES) {
+    try {
+      const result = db.exec(`SELECT COUNT(*) FROM ${table}`);
+      if (result.length > 0 && (result[0].values[0][0] as number) > 0) {
+        return; // At least one core table has data — DB looks valid
+      }
+    } catch {
+      // Table doesn't exist yet — that's fine, migrations haven't run
+      continue;
+    }
+  }
+
+  // File was large but all core tables are empty — likely corruption
+  throw new DatabaseCorruptionError(
+    `Database file is ${fileSize} bytes but loaded with zero rows in core tables (${CORE_TABLES.join(', ')}). ` +
+      'This likely indicates a corrupted or partially-read database file. ' +
+      'Refusing to proceed to prevent data loss. Check the backup at hive.db.bak if available.'
+  );
+}
+
 export async function createDatabase(dbPath: string): Promise<DatabaseClient> {
   const SqlJs = await getSqlJs();
   if (!SqlJs) throw new InitializationError('Failed to initialize sql.js');
 
   let db: SqlJsDatabase;
+  const backupPath = dbPath + '.bak';
 
   // Load existing database or create new one
   if (existsSync(dbPath)) {
     const buffer = readFileSync(dbPath);
-    db = new SqlJs.Database(buffer);
+    const fileSize = statSync(dbPath).size;
+
+    try {
+      db = new SqlJs.Database(buffer);
+      // Verify the database is usable by running a basic command
+      db.run('PRAGMA foreign_keys = ON');
+      db.exec('SELECT 1');
+    } catch (error) {
+      throw new DatabaseCorruptionError(
+        `Failed to load database file at ${dbPath}: ${error instanceof Error ? error.message : String(error)}`
+      );
+    }
+
+    // Validate the loaded DB is not silently empty from a corrupt file
+    validateLoadedDatabase(db, fileSize);
+
+    // Run migrations on loaded DB — wrap in try-catch to detect subtle corruption
+    try {
+      runMigrations(db);
+    } catch (error) {
+      throw new DatabaseCorruptionError(
+        `Database file at ${dbPath} appears corrupted (migrations failed): ${error instanceof Error ? error.message : String(error)}`
+      );
+    }
   } else {
     db = new SqlJs.Database();
+    // Enable foreign keys
+    db.run('PRAGMA foreign_keys = ON');
+    // Run migrations on new DB
+    runMigrations(db);
   }
 
-  // Enable foreign keys
-  db.run('PRAGMA foreign_keys = ON');
-
   const save = () => {
+    // Write backup before overwriting the main database file
+    if (existsSync(dbPath)) {
+      copyFileSync(dbPath, backupPath);
+    }
     const data = db.export();
     const buffer = Buffer.from(data);
     writeFileSync(dbPath, buffer);
   };
 
-  // Auto-run migrations
-  runMigrations(db);
-  save();
-
   const client: DatabaseClient = {
     db,
     close: () => {

package/src/errors/index.ts

@@ -104,6 +104,16 @@ export class NotFoundError extends HiveError {
   }
 }
 
+/**
+ * Database corruption errors (empty DB loaded from non-empty file, parse failures)
+ */
+export class DatabaseCorruptionError extends HiveError {
+  constructor(message: string) {
+    super(message, 'DATABASE_CORRUPTION_ERROR');
+    Object.setPrototypeOf(this, DatabaseCorruptionError.prototype);
+  }
+}
+
 /**
  * Helper function to convert generic errors to Hive errors
  */