homegraph 0.9.9

package/README.md

@@ -0,0 +1,709 @@
+<div align="center">
+
+# CodeGraph
+
+### Supercharge Claude Code, Cursor, Codex, OpenCode, Hermes Agent, Gemini, Antigravity, and Kiro with Semantic Code Intelligence
+
+**~16% cheaper · ~58% fewer tool calls · 100% local**
+
+### [Documentation & Website →](https://colbymchenry.github.io/codegraph/)
+
+[![npm version](https://img.shields.io/npm/v/@colbymchenry/codegraph.svg)](https://www.npmjs.com/package/@colbymchenry/codegraph)
+[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
+[![Self-contained](https://img.shields.io/badge/Node.js-bundled%20%C2%B7%20none%20required-brightgreen.svg)](https://nodejs.org/)
+
+[![Windows](https://img.shields.io/badge/Windows-supported-blue.svg)](#supported-platforms)
+[![macOS](https://img.shields.io/badge/macOS-supported-blue.svg)](#supported-platforms)
+[![Linux](https://img.shields.io/badge/Linux-supported-blue.svg)](#supported-platforms)
+
+[![Claude Code](https://img.shields.io/badge/Claude_Code-supported-blueviolet.svg)](#supported-agents)
+[![Cursor](https://img.shields.io/badge/Cursor-supported-blueviolet.svg)](#supported-agents)
+[![Codex](https://img.shields.io/badge/Codex-supported-blueviolet.svg)](#supported-agents)
+[![opencode](https://img.shields.io/badge/opencode-supported-blueviolet.svg)](#supported-agents)
+[![Hermes Agent](https://img.shields.io/badge/Hermes_Agent-supported-blueviolet.svg)](#supported-agents)
+[![Gemini](https://img.shields.io/badge/Gemini-supported-blueviolet.svg)](#supported-agents)
+[![Antigravity](https://img.shields.io/badge/Antigravity-supported-blueviolet.svg)](#supported-agents)
+[![Kiro](https://img.shields.io/badge/Kiro-supported-blueviolet.svg)](#supported-agents)
+
+<br>
+
+**The CodeGraph platform is coming** — for every PR, know exactly what to test, what could break, which flows are affected, and whether business logic is compromised.
+
+<a href="https://getcodegraph.com"><img alt="Join the waitlist for early beta access" src="https://raw.githubusercontent.com/colbymchenry/codegraph/main/assets/waitlist.svg?v=2" height="52"></a>
+
+<sub>Get <b>early beta access</b> to the hosted product · <a href="https://getcodegraph.com">getcodegraph.com</a></sub>
+
+</div>
+
+## Get Started
+
+### 1. Install the CLI
+
+**No Node.js required** — one command grabs the right build for your OS:
+
+```bash
+# macOS / Linux
+curl -fsSL https://raw.githubusercontent.com/colbymchenry/codegraph/main/install.sh | sh
+
+# Windows (PowerShell)
+irm https://raw.githubusercontent.com/colbymchenry/codegraph/main/install.ps1 | iex
+```
+
+Already have Node? Use npm instead (works on any version):
+
+```bash
+npm i -g @colbymchenry/codegraph
+```
+
+<sub>CodeGraph bundles its own runtime — nothing to compile, no native build, works the same everywhere. The installer puts `codegraph` on your PATH but **doesn't change your current shell** — open a new terminal before the next step so the command resolves.</sub>
+
+<sub>**Upgrade any time** with `codegraph upgrade` — it detects how you installed (bundle, npm, or npx) and updates in place. Add `--check` to see if an update is available, or `codegraph upgrade <version>` to pin one.</sub>
+
+### 2. Wire up your agent(s)
+
+In a **new terminal**, run the installer to connect CodeGraph to the agents you use:
+
+```bash
+codegraph install
+```
+
+<sub>Detects and auto-configures Claude Code, Cursor, Codex CLI, opencode, Hermes Agent, Gemini CLI, Antigravity IDE, and Kiro — wiring the CodeGraph MCP server into each. **This is the step that connects CodeGraph to your agent;** installing the CLI in step 1 does not do it on its own. (Shortcut: `npx @colbymchenry/codegraph` downloads and runs this in one go.)</sub>
+
+### 3. Initialize each project
+
+```bash
+cd your-project
+codegraph init -i
+```
+
+<sub>`codegraph init` just creates the local `.codegraph/` index directory; adding `-i` (`--index`) also builds the initial graph in the same step. Without `-i`, run `codegraph index` afterwards to populate it.</sub>
+
+<div align="center">
+
+![1_C_VYnhpys0UHrOuOgpgoyw](https://github.com/user-attachments/assets/f168182f-4d9a-44e0-94d7-08d018cc8a3a)
+
+</div>
+
+### Uninstall
+
+Changed your mind? One command removes CodeGraph from every agent it configured:
+
+```bash
+codegraph uninstall
+```
+
+<sub>Reverses the installer — strips CodeGraph's MCP server config, instructions, and permissions from each configured agent. Your project indexes (`.codegraph/`) are left untouched; remove those per-project with `codegraph uninit`. Use `--target` to remove from specific agents, or `--yes` to run non-interactively.</sub>
+
+---
+
+## Why CodeGraph?
+
+When Claude Code explores a codebase, it spawns **Explore agents** that scan files with grep, glob, and Read — consuming tokens on every tool call.
+
+**CodeGraph gives those agents a pre-indexed knowledge graph** — symbol relationships, call graphs, and code structure. Agents query the graph instantly instead of scanning files.
+
+### Benchmark Results
+
+Tested across **7 real-world open-source codebases** spanning 7 languages, comparing an agent (Claude Code, headless) answering one architecture question **with** and **without** CodeGraph. Each cell is the savings at the **median of 4 runs per arm**. _Re-validated on Opus 4.8 (2026-06-02), on the current build (`codegraph_explore` as the primary tool)._
+
+> **Average: 16% cheaper · 47% fewer tokens · 22% faster · 58% fewer tool calls**
+
+| Codebase | Language | Cost | Tokens | Time | Tool calls |
+|----------|----------|------|--------|------|------------|
+| **VS Code** | TypeScript · ~10k files | 18% cheaper | 64% fewer | 11% faster | 81% fewer |
+| **Excalidraw** | TypeScript · ~640 | even | 25% fewer | 27% faster | 40% fewer |
+| **Django** | Python · ~3k | 8% cheaper | 60% fewer | 13% faster | 77% fewer |
+| **Tokio** | Rust · ~790 | even | 38% fewer | 18% faster | 57% fewer |
+| **OkHttp** | Java · ~645 | 25% cheaper | 54% fewer | 31% faster | 50% fewer |
+| **Gin** | Go · ~110 | 19% cheaper | 23% fewer | 24% faster | 44% fewer |
+| **Alamofire** | Swift · ~110 | 40% cheaper | 64% fewer | 33% faster | 58% fewer |
+
+CodeGraph cuts **tokens, tool calls, and wall-clock time on every repo** — across small, medium, and large codebases — and answers them with **near-zero file reads**, while the no-CodeGraph agent spends its budget on grep/find/Read discovery. `codegraph_explore` shows the answer in full — the mechanism plus the exact methods you asked about, even when they're buried in a multi-thousand-line file — while collapsing redundant interchangeable implementations to signatures, so the response is sized to the *answer* rather than the file count. **Cost stays flat-to-cheaper everywhere** — largest on the small repos (Alamofire, OkHttp), roughly break-even on the most response-heavy ones (Excalidraw, Tokio), where CodeGraph trades the no-CodeGraph agent's many small grep/read round-trips for a few large, cache-heavy tool responses.
+
+<details>
+<summary><strong>Per-repo breakdown — WITH vs WITHOUT (median of 4)</strong></summary>
+
+**VS Code** · ~10k files
+| Metric | WITH cg | WITHOUT cg | Δ |
+|---|---|---|---|
+| Time | 1m 59s | 2m 13s | 11% faster |
+| File Reads | 0 | 9 | −9 |
+| Grep/Bash | 0 | 11 | −11 |
+| Tool calls | 4 | 21 | 81% fewer |
+| Total tokens | 640k | 1.79M | 64% fewer |
+| Cost | $0.68 | $0.83 | 18% cheaper |
+
+**Excalidraw** · ~640 files
+| Metric | WITH cg | WITHOUT cg | Δ |
+|---|---|---|---|
+| Time | 1m 32s | 2m 6s | 27% faster |
+| File Reads | 0 | 7 | −7 |
+| Grep/Bash | 1 | 8 | −7 |
+| Tool calls | 9 | 15 | 40% fewer |
+| Total tokens | 1.27M | 1.69M | 25% fewer |
+| Cost | $0.78 | $0.78 | even |
+
+**Django** · ~3k files
+| Metric | WITH cg | WITHOUT cg | Δ |
+|---|---|---|---|
+| Time | 1m 43s | 1m 58s | 13% faster |
+| File Reads | 0 | 9 | −9 |
+| Grep/Bash | 0 | 5 | −5 |
+| Tool calls | 3 | 13 | 77% fewer |
+| Total tokens | 559k | 1.41M | 60% fewer |
+| Cost | $0.57 | $0.62 | 8% cheaper |
+
+**Tokio** · ~790 files
+| Metric | WITH cg | WITHOUT cg | Δ |
+|---|---|---|---|
+| Time | 1m 55s | 2m 20s | 18% faster |
+| File Reads | 0 | 8 | −8 |
+| Grep/Bash | 0 | 6 | −6 |
+| Tool calls | 6 | 14 | 57% fewer |
+| Total tokens | 1.08M | 1.73M | 38% fewer |
+| Cost | $0.82 | $0.82 | even |
+
+**OkHttp** · ~645 files
+| Metric | WITH cg | WITHOUT cg | Δ |
+|---|---|---|---|
+| Time | 1m 1s | 1m 29s | 31% faster |
+| File Reads | 0 | 4 | −4 |
+| Grep/Bash | 2 | 6 | −4 |
+| Tool calls | 5 | 10 | 50% fewer |
+| Total tokens | 502k | 1.10M | 54% fewer |
+| Cost | $0.41 | $0.55 | 25% cheaper |
+
+**Gin** · ~110 files
+| Metric | WITH cg | WITHOUT cg | Δ |
+|---|---|---|---|
+| Time | 1m 14s | 1m 37s | 24% faster |
+| File Reads | 1 | 6 | −5 |
+| Grep/Bash | 1 | 2 | −1 |
+| Tool calls | 5 | 9 | 44% fewer |
+| Total tokens | 651k | 847k | 23% fewer |
+| Cost | $0.46 | $0.57 | 19% cheaper |
+
+**Alamofire** · ~110 files
+| Metric | WITH cg | WITHOUT cg | Δ |
+|---|---|---|---|
+| Time | 1m 35s | 2m 21s | 33% faster |
+| File Reads | 0 | 9 | −9 |
+| Grep/Bash | 0 | 4 | −4 |
+| Tool calls | 5 | 12 | 58% fewer |
+| Total tokens | 766k | 2.10M | 64% fewer |
+| Cost | $0.57 | $0.95 | 40% cheaper |
+
+</details>
+
+<details>
+<summary><strong>Full benchmark details</strong></summary>
+
+**Methodology.** Each arm is `claude -p` (Claude Opus 4.8) run headlessly against the repo with `--strict-mcp-config`: **WITH** = CodeGraph's MCP server enabled, **WITHOUT** = an empty MCP config. Built-in Read/Grep/Bash stay available to both. Same question per repo, **4 runs per arm, median reported**. Cost = the run's `total_cost_usd`; Tokens = total tokens processed (input incl. cached + output); Time = wall-clock; Tool calls = every tool invocation, including those inside any sub-agents the model spawns. Repos cloned at `--depth 1` and indexed by the same CodeGraph build that served them. Re-validated 2026-06-02 on the current build. These numbers are lower than the prior Opus 4.7 validation — not a CodeGraph regression but a stronger native baseline: Opus 4.8 greps/reads efficiently on the main thread instead of fanning out into large Explore-subagent sweeps, so the no-CodeGraph arm is leaner than it used to be. Per-repo numbers move run-to-run with how hard the without-arm thrashes (the median-of-4 smooths it, but tails remain — e.g. Django's without-arm hit $2.71/14m one batch).
+
+**Queries:**
+| Codebase | Query |
+|----------|-------|
+| VS Code | "How does the extension host communicate with the main process?" |
+| Excalidraw | "How does Excalidraw render and update canvas elements?" |
+| Django | "How does Django's ORM build and execute a query from a QuerySet?" |
+| Tokio | "How does tokio schedule and run async tasks on its runtime?" |
+| OkHttp | "How does OkHttp process a request through its interceptor chain?" |
+| Gin | "How does gin route requests through its middleware chain?" |
+| Alamofire | "How does Alamofire build, send, and validate a request?" |
+
+**Why CodeGraph wins:** with the index available, the agent answers directly — usually one `codegraph_explore` returns the relevant source — and stops, usually with zero file reads. Without it, the agent spends most of its budget on discovery (find/ls/grep) before reading the right code. CodeGraph only helps when queried *directly*, so its instructions steer agents to answer directly rather than delegate exploration to file-reading sub-agents — otherwise a sub-agent reads files regardless and CodeGraph becomes overhead.
+
+</details>
+
+---
+
+## Key Features
+
+| | |
+|---|---|
+| **Smart Context Building** | One tool call returns entry points, related symbols, and code snippets — no expensive exploration agents |
+| **Full-Text Search** | Find code by name instantly across your entire codebase, powered by FTS5 |
+| **Impact Analysis** | Trace callers, callees, and the full impact radius of any symbol before making changes |
+| **Always Fresh** | File watcher uses native OS events (FSEvents/inotify/ReadDirectoryChangesW) with debounced auto-sync — the graph stays current as you code, zero config |
+| **20+ Languages** | TypeScript, JavaScript, Python, Go, Rust, Java, C#, PHP, Ruby, C, C++, Objective-C, Swift, Kotlin, Dart, Lua, Luau, Svelte, Liquid, Pascal/Delphi |
+| **Framework-aware Routes** | Recognizes web-framework routing files and links URL patterns to their handlers across 14 frameworks |
+| **Mixed iOS / React Native / Expo** | Closes cross-language flows that static parsing misses: Swift ↔ ObjC bridging, React Native legacy bridge + TurboModules + Fabric view components, native → JS event emitters, Expo Modules |
+| **100% Local** | No data leaves your machine. No API keys. No external services. SQLite database only |
+
+<details>
+<summary><strong>How auto-syncing works — and why you don't need to run <code>codegraph sync</code> manually</strong></summary>
+
+When your agent (Claude Code, Cursor, Codex, opencode) launches `codegraph serve --mcp`, three layers keep the index in step with your code — and make sure the agent never gets a silent wrong answer in the brief window between an edit and the next sync:
+
+1. **File watcher with debounced auto-sync.** A native FSEvents / inotify / ReadDirectoryChangesW watcher captures every source-file create / modify / delete and triggers a re-index after a debounce window (default `2000ms`, tunable via `CODEGRAPH_WATCH_DEBOUNCE_MS`, clamped to `[100ms, 60s]`). Bursts of edits collapse into a single sync.
+
+2. **Per-file staleness banner.** During the brief debounce window, MCP tool responses that would reference a still-pending file prepend a `⚠️` banner naming it and telling the agent to `Read` it directly. Pending files NOT referenced by the response surface as a small footer instead. Either way, the agent gets an explicit signal — validated with Claude Code, where the agent literally says "Reading the file directly for the live content" before opening it.
+
+3. **Connect-time catch-up.** When the MCP server (re)connects, codegraph runs a fast `(size, mtime)` + content-hash reconciliation against the working tree before answering the first query — so edits made while no MCP server was running (a `git pull` from the terminal, edits from another editor, a previous agent session that exited) get absorbed on the next session's first tool call.
+
+```
+agent writes src/Widget.ts
+  → watcher fires (<100ms)
+  → debounce (default 2s)
+  → sync; Widget.ts is in the index
+  → next agent query sees it
+```
+
+**Verify any time** with `codegraph_status` (via MCP) or `codegraph status` (CLI). If anything is pending, you'll see a `### Pending sync:` section naming the files and their edit age.
+
+The handful of cases where manual `codegraph sync` makes sense: the watcher is disabled (sandboxed environments, or `CODEGRAPH_NO_DAEMON=1`), or you're scripting against the index outside an agent session and want a pre-flight sync at the start of your script.
+
+→ Full deep-dive in [Guides → Indexing a Project](https://colbymchenry.github.io/codegraph/guides/indexing/#stay-fresh-automatically).
+
+</details>
+
+---
+
+## Framework-aware Routes
+
+CodeGraph detects web-framework routing files and emits `route` nodes linked by `references` edges to their handler classes or functions. Querying callers of a view/controller now surfaces the URL pattern that binds it.
+
+| Framework | Shapes recognized |
+|---|---|
+| **Django** | `path()`, `re_path()`, `url()`, `include()` in `urls.py` (CBV `.as_view()`, dotted paths) |
+| **Flask** | `@app.route('/path', methods=[...])`, blueprint routes |
+| **FastAPI** | `@app.get(...)`, `@router.post(...)`, all standard methods |
+| **Express** | `app.get(...)`, `router.post(...)` with middleware chains |
+| **NestJS** | `@Controller` + `@Get/@Post/...`, GraphQL `@Resolver` + `@Query/@Mutation`, `@MessagePattern`/`@EventPattern`, `@SubscribeMessage` |
+| **Laravel** | `Route::get()`, `Route::resource()`, `Controller@action`, tuple syntax |
+| **Drupal** | `*.routing.yml` routes (`_controller`, `_form`, entity handlers); `hook_*` implementations in `.module`/`.theme`/`.install`/`.inc` |
+| **Rails** | `get '/x', to: 'users#index'`, hash-rocket `=>` syntax |
+| **Spring** | `@GetMapping`, `@PostMapping`, `@RequestMapping` on methods |
+| **Gin / chi / gorilla / mux** | `r.GET(...)`, `router.HandleFunc(...)` |
+| **Axum / actix / Rocket** | `.route("/x", get(handler))` |
+| **ASP.NET** | `[HttpGet("/x")]` attributes on action methods |
+| **Vapor** | `app.get("x", use: handler)` |
+| **React Router** / **SvelteKit** | Route component nodes |
+
+---
+
+## Mixed iOS / React Native / Expo bridging
+
+Real iOS and React Native codebases live across multiple languages — a Swift caller invokes an Objective-C selector that's been auto-bridged, a JS file calls into a native module via the React Native bridge, a JSX component delegates to a native view manager. Static tree-sitter extraction stops at each language boundary. CodeGraph bridges them so `trace`, `callers`, `callees`, and `impact` connect end-to-end across the gap.
+
+| Boundary | JS / Swift side | Native side | How |
+|---|---|---|---|
+| **Swift → ObjC** | Swift `obj.foo(bar:)` | ObjC selector `-fooWithBar:` | `@objc` auto-bridging rules (including init/property/protocol forms) + Cocoa preposition prefixes (`With`/`For`/`By`/`In`/`On`/`At`/…) |
+| **ObjC → Swift** | ObjC `[obj fooWithBar:]` | Swift `@objc func foo(bar:)` | Reverse-bridge name candidates; verifies `@objc` exposure from source |
+| **React Native legacy bridge** | JS `NativeModules.X.fn(...)` | ObjC `RCT_EXPORT_METHOD` / `RCT_REMAP_METHOD` · Java/Kotlin `@ReactMethod` | Parses macro/annotation declarations to build a JS-name → native-method map |
+| **React Native TurboModules** | JS `import M from './NativeM'; M.fn(...)` | Native impl matching the Codegen spec | Treats the `Native<X>.ts` spec interface as ground truth |
+| **RN native → JS events** | JS `new NativeEventEmitter(...).addListener('e', cb)` | ObjC `[self sendEventWithName:@"e" body:...]` · Swift `sendEvent(withName: "e", ...)` · Java/Kotlin `.emit("e", ...)` | Synthesized cross-language event channel keyed by literal event name |
+| **Expo Modules** | JS `requireNativeModule('X').fn(...)` | Swift / Kotlin `Module { Name("X"); AsyncFunction("fn") { ... } }` | Parses the Expo DSL literals; synthetic method nodes resolve via existing name-match |
+| **Fabric view components** | JSX `<MyView prop={v}/>` | TS Codegen spec + native impl class | Spec → `component` node; convention-based name+suffix lookup (`View`/`ComponentView`/`Manager`/`ViewManager`) bridges to native |
+| **Legacy Paper view managers** | JSX `<MyView prop={v}/>` | ObjC `RCT_EXPORT_VIEW_PROPERTY` · Java/Kotlin `@ReactProp` | Same as Fabric — Paper-era declarations also produce `component` + `property` nodes |
+
+**Validated on real codebases** (small + medium + large for each bridge):
+
+| Bridge | Small | Medium | Large |
+|---|---|---|---|
+| Swift ↔ ObjC | [Charts](https://github.com/danielgindi/Charts) | [realm-swift](https://github.com/realm/realm-swift) | [Wikipedia-iOS](https://github.com/wikimedia/wikipedia-ios) |
+| RN legacy bridge | [AsyncStorage](https://github.com/react-native-async-storage/async-storage) | [react-native-svg](https://github.com/software-mansion/react-native-svg) | [react-native-firebase](https://github.com/invertase/react-native-firebase) |
+| RN native → JS events | [RNGeolocation](https://github.com/Agontuk/react-native-geolocation-service) | — | react-native-firebase |
+| Expo Modules | expo-haptics | expo-camera | expo SDK sweep (7 packages) |
+| Fabric / Paper views | [react-native-segmented-control](https://github.com/react-native-segmented-control/segmented-control) | [react-native-screens](https://github.com/software-mansion/react-native-screens) | [react-native-skia](https://github.com/Shopify/react-native-skia) |
+
+Each bridge emits edges tagged `provenance:'heuristic'` with `metadata.synthesizedBy:` set to a stable channel name (e.g. `swift-objc-bridge`, `rn-event-channel`, `fabric-native-impl`, `expo-module-extract`), so the agent can tell at a glance how a hop got into the graph.
+
+---
+
+## Quick Start
+
+### 1. Run the Installer
+
+```bash
+npx @colbymchenry/codegraph
+```
+
+The installer will:
+- Ask which agent(s) to configure — auto-detects installed ones from: **Claude Code**, **Cursor**, **Codex CLI**, **opencode**, **Hermes Agent**, **Gemini CLI**, **Antigravity IDE**, **Kiro**
+- Prompt to install `codegraph` on your PATH (so agents can launch the MCP server)
+- Ask whether configs apply to all your projects or just this one
+- Write each chosen agent's MCP server config (the codegraph usage guide is delivered by the MCP server itself, so no instructions file is added to `CLAUDE.md` / `AGENTS.md` / etc.)
+- Set up auto-allow permissions when Claude Code is one of the targets
+- Initialize your current project (local installs only)
+
+**Non-interactive (scripting / CI):**
+
+```bash
+codegraph install --yes                              # auto-detect agents, install global
+codegraph install --target=cursor,claude --yes       # explicit target list
+codegraph install --target=auto --location=local     # detected agents, project-local
+codegraph install --print-config codex               # print snippet, no file writes
+```
+
+| Flag | Values | Default |
+|---|---|---|
+| `--target` | `auto`, `all`, `none`, or csv (`claude,cursor,...`) | prompt |
+| `--location` | `global`, `local` | prompt |
+| `--yes` | (boolean) | prompt every step |
+| `--no-permissions` | (boolean) skip Claude auto-allow list | permissions on |
+| `--print-config <id>` | dump snippet for one agent and exit | — |
+
+### 2. Restart Your Agent
+
+Restart your agent (Claude Code / Cursor / Codex CLI / opencode / Hermes Agent / Gemini CLI / Antigravity IDE / Kiro) for the MCP server to load.
+
+### 3. Initialize Projects
+
+```bash
+cd your-project
+codegraph init -i
+```
+
+Builds the per-project knowledge graph index. A single global `codegraph install` works in every project you open — no need to re-run the installer per project.
+
+That's it — your agent will use CodeGraph tools automatically when a `.codegraph/` directory exists.
+
+<details>
+<summary><strong>Manual Setup (Alternative)</strong></summary>
+
+**Install globally:**
+```bash
+npm install -g @colbymchenry/codegraph
+```
+
+**Add to `~/.claude.json`:**
+```json
+{
+  "mcpServers": {
+    "codegraph": {
+      "type": "stdio",
+      "command": "codegraph",
+      "args": ["serve", "--mcp"]
+    }
+  }
+}
+```
+
+**Add to `~/.claude/settings.json` (optional, for auto-allow):**
+```json
+{
+  "permissions": {
+    "allow": [
+      "mcp__codegraph__codegraph_search",
+      "mcp__codegraph__codegraph_explore",
+      "mcp__codegraph__codegraph_callers",
+      "mcp__codegraph__codegraph_callees",
+      "mcp__codegraph__codegraph_impact",
+      "mcp__codegraph__codegraph_node",
+      "mcp__codegraph__codegraph_status",
+      "mcp__codegraph__codegraph_files"
+    ]
+  }
+}
+```
+
+</details>
+
+<details>
+<summary><strong>Agent Tool Guidance</strong></summary>
+
+CodeGraph's MCP server delivers its usage guidance to your agent **automatically**, in the MCP `initialize` response — there's no instructions file to manage and nothing is added to your `CLAUDE.md` / `AGENTS.md` / `GEMINI.md`. In short, it tells the agent to:
+
+- **Answer structural questions directly with CodeGraph** — it *is* the pre-built index, so a grep/read loop just repeats work it already did. Treat the returned source as already read.
+- **Pick the tool by intent:** `codegraph_explore` for almost anything — "how does X work", a flow/"how does X reach Y", or surveying an area (one call returns the relevant symbols' source grouped by file); `codegraph_search` to just locate a symbol; `codegraph_callers`/`codegraph_callees` to walk call flow; `codegraph_impact` before editing; `codegraph_node` for one specific symbol's full source (it returns every overload for an ambiguous name).
+- **Trust the results — don't re-verify with grep**, and check the staleness banner after edits.
+- If `.codegraph/` doesn't exist yet, offer to run `codegraph init -i`.
+
+The exact text is `src/mcp/server-instructions.ts` — the single source of truth.
+
+</details>
+
+---
+
+## How It Works
+
+```
+┌───────────────────────────────────────────────────────────────────┐
+│                            Claude Code                            │
+│                                                                   │
+│   "How does a request reach the database?"                        │
+│       calls CodeGraph tools directly — no Explore sub-agent       │
+│                                 │                                 │
+└─────────────────────────────────┬─────────────────────────────────┘
+                                  │
+                                  ▼
+┌───────────────────────────────────────────────────────────────────┐
+│                        CodeGraph MCP Server                       │
+│                                                                   │
+│       explore · search · callers · callees · impact · node        │
+│                                 │                                 │
+│                                 ▼                                 │
+│                       SQLite knowledge graph                      │
+│          symbols · edges · files · FTS5 full-text search          │
+└───────────────────────────────────────────────────────────────────┘
+```
+
+1. **Extraction** — [tree-sitter](https://tree-sitter.github.io/) parses source code into ASTs. Language-specific queries extract nodes (functions, classes, methods) and edges (calls, imports, extends, implements).
+
+2. **Storage** — Everything goes into a local SQLite database (`.codegraph/codegraph.db`) with FTS5 full-text search.
+
+3. **Resolution** — After extraction, references are resolved: function calls → definitions, imports → source files, class inheritance, and framework-specific patterns.
+
+4. **Auto-Sync** — The MCP server watches your project using native OS file events. Changes are debounced (2-second quiet window), filtered to source files only, and incrementally synced. The graph stays fresh as you code — no configuration needed.
+
+---
+
+## CLI Reference
+
+```bash
+codegraph                         # Run interactive installer
+codegraph install                 # Run installer (explicit)
+codegraph uninstall               # Remove CodeGraph from your agents (inverse of install)
+codegraph init [path]             # Initialize in a project (--index to also index)
+codegraph uninit [path]           # Remove CodeGraph from a project (--force to skip prompt)
+codegraph index [path]            # Full index (--force to re-index, --quiet for less output)
+codegraph sync [path]             # Incremental update
+codegraph status [path]           # Show statistics
+codegraph query <search>          # Search symbols (--kind, --limit, --json)
+codegraph files [path]            # Show file structure (--format, --filter, --max-depth, --json)
+codegraph callers <symbol>        # Find what calls a function/method (--limit, --json)
+codegraph callees <symbol>        # Find what a function/method calls (--limit, --json)
+codegraph impact <symbol>         # Analyze what code is affected by changing a symbol (--depth, --json)
+codegraph affected [files...]     # Find test files affected by changes (see below)
+codegraph serve --mcp             # Start MCP server
+codegraph upgrade [version]       # Update to the latest release (--check, --force)
+```
+
+### `codegraph affected`
+
+Traces import dependencies transitively to find which test files are affected by changed source files.
+
+```bash
+codegraph affected src/utils.ts src/api.ts         # Pass files as arguments
+git diff --name-only | codegraph affected --stdin   # Pipe from git diff
+codegraph affected src/auth.ts --filter "e2e/*"     # Custom test file pattern
+```
+
+| Option | Description | Default |
+|--------|-------------|---------|
+| `--stdin` | Read file list from stdin | `false` |
+| `-d, --depth <n>` | Max dependency traversal depth | `5` |
+| `-f, --filter <glob>` | Custom glob to identify test files | auto-detect |
+| `-j, --json` | Output as JSON | `false` |
+| `-q, --quiet` | Output file paths only | `false` |
+
+**CI/hook example:**
+
+```bash
+#!/usr/bin/env bash
+AFFECTED=$(git diff --name-only HEAD | codegraph affected --stdin --quiet)
+if [ -n "$AFFECTED" ]; then
+  npx vitest run $AFFECTED
+fi
+```
+
+---
+
+## MCP Tools
+
+When running as an MCP server, CodeGraph exposes these tools to Claude Code:
+
+| Tool | Purpose |
+|------|---------|
+| `codegraph_explore` | **Primary.** Answer almost any question in one call — "how does X work", a flow ("how does X reach Y"), or surveying an area — returning the relevant symbols' verbatim source grouped by file, plus a relationship map and blast radius. Surfaces dynamic-dispatch hops (callbacks, React re-render, interface→impl) grep can't follow. |
+| `codegraph_search` | Find symbols by name across the codebase |
+| `codegraph_callers` | Find what calls a function |
+| `codegraph_callees` | Find what a function calls |
+| `codegraph_impact` | Analyze what code is affected by changing a symbol |
+| `codegraph_node` | Get one specific symbol's details + full source (returns every overload for an ambiguous name) |
+| `codegraph_files` | Get indexed file structure (faster than filesystem scanning) |
+| `codegraph_status` | Check index health and statistics |
+
+---
+
+## Library Usage
+
+CodeGraph can be embedded directly. The npm package re-exports its programmatic
+API, so both `import` and `require` resolve the `CodeGraph` class in your own
+process — handy for embedding it in an app (e.g. an Electron main process).
+
+```typescript
+import CodeGraph from '@colbymchenry/codegraph';
+// CommonJS works too:
+//   const { CodeGraph } = require('@colbymchenry/codegraph');
+
+const cg = await CodeGraph.init('/path/to/project');
+// Or: const cg = await CodeGraph.open('/path/to/project');
+
+await cg.indexAll({
+  onProgress: (p) => console.log(`${p.phase}: ${p.current}/${p.total}`)
+});
+
+const results = cg.searchNodes('UserService');
+const callers = cg.getCallers(results[0].node.id);
+const context = await cg.buildContext('fix login bug', { maxNodes: 20, includeCode: true, format: 'markdown' });
+const impact = cg.getImpactRadius(results[0].node.id, 2);
+
+cg.watch();   // auto-sync on file changes
+cg.unwatch(); // stop watching
+cg.close();
+```
+
+Lower-level building blocks are exported from the same entry point for callers
+that drive the graph directly: `DatabaseConnection`, `QueryBuilder`,
+`getDatabasePath`, `initGrammars` / `loadGrammarsForLanguages`, and `FileLock`.
+
+**Embedding requirements**
+
+- Install from npm (`npm i @colbymchenry/codegraph`) so the matching
+  per-platform package — which carries the compiled library and its
+  dependencies — is fetched alongside the shim.
+- The API runs on **your** runtime, so it needs **Node 22.5+** for the built-in
+  `node:sqlite` (Electron qualifies when its bundled Node is 22.5+). The CLI and
+  MCP server are unaffected — they run on the self-contained bundled runtime.
+- TypeScript types ship with the package. As with any Node-targeting library,
+  keep `@types/node` available and `skipLibCheck: true` (the common default).
+
+---
+
+## Configuration
+
+There isn't any — CodeGraph is zero-config, with **no config file** to write or
+keep in sync. Language support is automatic from the file extension; there's
+nothing to wire up per language.
+
+What it skips out of the box:
+
+- **Dependency, build, and cache directories** — `node_modules`, `vendor`,
+  `dist`, `build`, `target`, `.venv`, `Pods`, `.next`, and the like across every
+  [supported stack](#supported-languages) — so the graph is your code, not
+  third-party noise. This holds even with no `.gitignore`.
+- **Anything in your `.gitignore`** — honored in git repos via git, and in
+  non-git projects by reading `.gitignore` directly (root and nested).
+- **Files larger than 1 MB** — generated bundles, minified JS, vendored blobs.
+
+To keep something else out, add it to `.gitignore`. To pull a default-excluded
+directory back **in** (say you really do want a vendored dependency indexed),
+add a negation — `!vendor/`. The defaults apply uniformly, so committing a
+dependency or build directory doesn't force it into the graph; the `.gitignore`
+negation is the explicit opt-in.
+
+## Supported Platforms
+
+Every release ships a self-contained build (bundled Node runtime — nothing to
+compile) for all three desktop OSes, on both Intel/AMD (x64) and ARM (arm64):
+
+| Platform | Architectures | Install |
+|----------|---------------|---------|
+| Windows | x64, arm64 | PowerShell installer or npm |
+| macOS | x64, arm64 | shell installer or npm |
+| Linux | x64, arm64 | shell installer or npm |
+
+See [Get Started](#get-started) for the one-line install commands.
+
+## Supported Agents
+
+The interactive installer auto-detects and configures each of these — wiring up
+the MCP server (which delivers its own usage guidance, so no instructions file
+is written):
+
+- **Claude Code**
+- **Cursor**
+- **Codex CLI**
+- **opencode**
+- **Hermes Agent**
+- **Gemini CLI**
+- **Antigravity IDE**
+- **Kiro**
+
+## Supported Languages
+
+| Language | Extension | Status |
+|----------|-----------|--------|
+| TypeScript | `.ts`, `.tsx` | Full support |
+| JavaScript | `.js`, `.jsx`, `.mjs` | Full support |
+| Python | `.py` | Full support |
+| Go | `.go` | Full support |
+| Rust | `.rs` | Full support |
+| Java | `.java` | Full support |
+| C# | `.cs` | Full support |
+| PHP | `.php` | Full support |
+| Ruby | `.rb` | Full support |
+| C | `.c`, `.h` | Full support |
+| C++ | `.cpp`, `.hpp`, `.cc` | Full support |
+| Objective-C | `.m`, `.mm`, `.h` | Partial support (classes, protocols, methods, `@property`, `#import`, message sends; `.mm` ObjC++ may parse incompletely) |
+| Swift | `.swift` | Full support |
+| Kotlin | `.kt`, `.kts` | Full support |
+| Scala | `.scala`, `.sc` | Full support (classes, traits, methods, type aliases, Scala 3 enums) |
+| Dart | `.dart` | Full support |
+| Svelte | `.svelte` | Full support (script extraction, Svelte 5 runes, SvelteKit routes) |
+| Vue | `.vue` | Full support (script + script-setup extraction, Nuxt page/API/middleware routes) |
+| Liquid | `.liquid` | Full support |
+| Pascal / Delphi | `.pas`, `.dpr`, `.dpk`, `.lpr` | Full support (classes, records, interfaces, enums, DFM/FMX form files) |
+| Lua | `.lua` | Full support (functions, methods with receivers, local variables, `require` imports, call edges) |
+| Luau | `.luau` | Full support (everything in Lua, plus `type`/`export type` aliases, typed signatures, and Roblox instance-path `require`) |
+
+## Measured cross-file coverage
+
+Impact and blast-radius queries are only as good as the dependency graph behind them, so coverage is measured rather than asserted. **Fair coverage** = the share of symbol-bearing source files that have at least one *resolved cross-file dependent* — something that imports, calls, references, or (through a framework convention) routes to them — on a real-world benchmark repo per language. The residual is always a genuine static-analysis frontier (runtime dynamic dispatch, reflection / DI containers, framework-convention entry points, vendored third-party code), never hidden by gaming the denominator.
+
+| Language | Benchmark repo | Coverage |
+|---|---|---|
+| TypeScript / JavaScript | this repo | 95.8% |
+| Python | psf/requests | 100% |
+| Go | gin-gonic/gin | 96.6% |
+| Rust | BurntSushi/ripgrep | 86.7% |
+| Java | google/gson | 93.3% |
+| C# | jbogard/MediatR | 85.2% |
+| PHP | guzzle/guzzle | 100% |
+| Ruby | sidekiq/sidekiq | 100% |
+| C | redis/redis | 92.2% |
+| C++ | google/leveldb | 94.8% |
+| Objective-C | SDWebImage | 91.6% |
+| Swift | Alamofire | 95.3% |
+| Kotlin | square/okhttp | 96.2% |
+| Scala | gatling/gatling | 91.2% |
+| Dart | flutter/packages | 92.4% |
+| Svelte / SvelteKit | sveltejs/realworld | 100% |
+| Vue / Nuxt | nuxt/movies | 93.5% |
+| Lua | nvim-telescope/telescope.nvim | 84.2% |
+| Luau | dphfox/Fusion | 92.2% |
+| Liquid | Shopify/dawn | 73.8% |
+| Pascal / Delphi | PascalCoin | 75.7% |
+
+Framework routing is validated the same way, on a canonical app per framework: Express 100%, FastAPI 98%, Flask 100%, NestJS 96.8%, Gin 96.5%, Axum 100%, Rocket 93.8%, Vapor 100%, Laravel 92%, Rails 89.6%, React Router 100% — and the convention/reflection-heavy ones at their honest static-analysis ceiling: ASP.NET 83.9%, Spring 83.3%, Drupal 78.9%, Django 74.1%.
+
+## Troubleshooting
+
+**"CodeGraph not initialized"** — Run `codegraph init` in your project directory first.
+
+**Indexing is slow** — Check that `node_modules` and other large directories are excluded. Use `--quiet` to reduce output overhead.
+
+**MCP hits `database is locked`** — current builds shouldn't: CodeGraph bundles its own Node runtime and uses Node's built-in `node:sqlite` in WAL mode, where concurrent reads never block on a writer. If you still see it:
+
+- **You're on an old (pre-0.9) install.** Reinstall to get the bundled runtime — `curl -fsSL https://raw.githubusercontent.com/colbymchenry/codegraph/main/install.sh | sh` (macOS/Linux), `irm https://raw.githubusercontent.com/colbymchenry/codegraph/main/install.ps1 | iex` (Windows), or `npm i -g @colbymchenry/codegraph@latest`.
+- **`codegraph status` shows `Journal:` other than `wal`** — WAL couldn't be enabled on this filesystem (common on network shares and WSL2 `/mnt`), so reads can block on writes. Move the project (with its `.codegraph/` folder) onto a local disk.
+
+**MCP server not connecting** — Ensure the project is initialized/indexed, verify the path in your MCP config, and check that `codegraph serve --mcp` works from the command line.
+
+**Missing symbols** — The MCP server auto-syncs on save (wait a couple seconds). Run `codegraph sync` manually if needed. Check that the file's language is supported and isn't inside a `.gitignore`d or default-excluded directory (e.g. `node_modules`, `dist`).
+
+## Star History
+
+<a href="https://www.star-history.com/?repos=colbymchenry%2Fcodegraph&type=date&legend=top-left">
+ <picture>
+   <source media="(prefers-color-scheme: dark)" srcset="https://api.star-history.com/chart?repos=colbymchenry/codegraph&type=date&theme=dark&legend=top-left" />
+   <source media="(prefers-color-scheme: light)" srcset="https://api.star-history.com/chart?repos=colbymchenry/codegraph&type=date&legend=top-left" />
+   <img alt="Star History Chart" src="https://api.star-history.com/chart?repos=colbymchenry/codegraph&type=date&legend=top-left" />
+ </picture>
+</a>
+
+## License
+
+MIT
+
+---
+
+<div align="center">
+
+**Made for AI coding agents — Claude Code, Cursor, Codex CLI, opencode, Hermes Agent, Gemini CLI, Antigravity IDE, and Kiro**
+
+[Report Bug](https://github.com/colbymchenry/codegraph/issues) · [Request Feature](https://github.com/colbymchenry/codegraph/issues)
+
+</div>