hmem-mcp 2.1.0 → 2.3.0

package/README.md

@@ -2,8 +2,7 @@
 
 > AI agents forget everything when a session ends. hmem changes that.
 
-> **Beta:** hmem is functional and actively used in production, but APIs and file formats
-> may still change. Feedback and bug reports welcome. Also the parameters I chose need to be tested and tweaked.
+> hmem is actively used in production. APIs are stable since v2.0. Feedback and bug reports welcome.
 
 **hmem** is a Model Context Protocol (MCP) server that gives AI agents persistent, humanlike memory — modeled after how human memory actually works.
 
@@ -41,6 +40,9 @@ A freshly spawned agent receives only Level 1 — the broadest strokes. When it
 
 ## How It Works
 
+<img width="693" height="715" alt="image" src="https://github.com/user-attachments/assets/9dcb382a-6567-4040-99d2-61916a6d7531" />
+
+
 ### Saving Memory
 
 After completing a task, an agent calls `write_memory` with tab-indented content. The indentation depth maps to memory levels — multiple entries at the same depth become siblings.
@@ -68,12 +70,13 @@ Each node gets a compound ID (`L0003.2.1`) so any branch is individually address
 Entries can be updated without deleting and recreating them:
 
 ```
-update_memory(id="L0003", content="Corrected L1 summary")
-update_memory(id="L0003.2", content="Fixed sub-node text")
+update_memory(id="L0003", content="Corrected L1 summary")   # update text
+update_memory(id="L0003", favorite=true)                     # toggle flag only
+update_memory(id="L0003.2", content="Fixed sub-node text")   # fix a sub-node
 append_memory(id="L0003", content="New finding\n\tSub-detail")
 ```
 
-`update_memory` replaces the text of a single node (children preserved). `append_memory` adds new child nodes to an existing entry.
+`update_memory` replaces the text of a single node (children preserved). Content is optional — pass only flags to toggle them without repeating the text. `append_memory` adds new child nodes to an existing entry.
 
 ### Obsolete Entries
 
@@ -101,13 +104,17 @@ A dedicated curator agent runs periodically to maintain memory health. It detect
 
 - **Hierarchical retrieval** — lazy loading of detail levels saves tokens
 - **True tree structure** — multiple siblings at the same depth (not just one chain)
+- **Compact output** — child IDs render as `.7` instead of `P0029.7`; dates shown only when differing from parent
 - **Persistent across sessions** — agents remember previous work even after restart
-- **Editable without deletion** — `update_memory` and `append_memory` modify entries in place
-- **Obsolete flag** — mark outdated entries as obsolete; hidden from bulk reads but still searchable — knowledge is never destroyed, only archived
-- **Favorite flag** — mark any entry as `[♥]` to always see it with L2 detail, regardless of category
-- **Access-count promotion** — the top-N most-accessed entries are automatically shown with L2 detail (`[★]`)
-- **Effective-date sorting** — entries with recent appends surface to the top (old P entries grow over time without losing their position)
-- **Token-efficient bulk reads** — only the most recent L2 child is shown in bulk reads, with a "+N more" hint
+- **Editable without deletion** — `update_memory` and `append_memory` modify entries in place; content is optional when toggling flags
+- **Markers** — `[♥]` favorite, `[!]` obsolete, `[-]` irrelevant, `[*]` active, `[s]` secret — on root entries and sub-nodes
+- **Obsolete chain resolution** — mark entries/sub-nodes obsolete with `[✓ID]` reference; `read_memory` auto-follows the chain to the current version
+- **Access-count promotion** — most-accessed entries get expanded automatically (`[★]`); most-referenced sub-nodes shown as "Hot Nodes"
+- **Session cache** — bulk reads suppress already-seen entries with Fibonacci decay; two modes: `discover` (newest-heavy) and `essentials` (importance-heavy)
+- **Active-prefix filtering** — mark entries as `[*]` active to focus bulk reads on what matters now; non-active entries still show as compact titles
+- **Secret entries** — `[s]` entries/nodes excluded from `export_memory`
+- **Titles & compact views** — auto-extracted titles; `titles_only` mode for table-of-contents view
+- **Effective-date sorting** — entries with recent appends surface to the top
 - **Per-agent memory** — each agent has its own `.hmem` file (SQLite)
 - **Skill-file driven** — agents are instructed via skill files, no hardcoded logic
 - **MCP-native** — works with Claude Code, Gemini CLI, OpenCode, and any MCP-compatible tool
@@ -125,11 +132,14 @@ npx hmem-mcp init
 That's it. The interactive installer will:
 - Detect your installed AI coding tools (Claude Code, OpenCode, Cursor, Windsurf, Cline)
 - Ask whether to install **system-wide** (memories in `~/.hmem/`) or **project-local** (memories in current directory)
+- **Offer an example memory** with 67 real entries from hmem development — or start fresh
 - Configure each tool's MCP settings automatically
 - Create the memory directory and `hmem.config.json`
 
 After the installer finishes, restart your AI tool and call `read_memory()` to verify.
 
+> **Example memory:** The installer includes `hmem_developer.hmem` — a real `.hmem` database with 67 entries and 287 nodes from actual hmem development. It contains lessons learned, architecture decisions, error fixes, and project milestones — a great way to see how hmem works in practice before writing your own entries. You can explore it immediately with `read_memory()` after install, or browse it in the TUI viewer with `python3 hmem-reader.py path/to/memory.hmem`.
+
 > **Don't forget the skill files!** The MCP server provides the tools (read_memory, write_memory, etc.), but the slash commands (`/hmem-save`, `/hmem-read`) require skill files to be copied to your tool's skills directory. See the [Skill Files](#skill-files) section below — it's a one-time copy-paste.
 >
 > **Coming from the MCP Registry?** Run `npx hmem-mcp init` first — it configures your tools and creates the memory directory. Then copy the skill files as described below.
@@ -265,10 +275,12 @@ done
 
 | Tool | Description |
 |------|-------------|
-| `read_memory` | Read hierarchical memories — L1 summaries or drill into any node by ID |
+| `read_memory` | Read memories — L1 summaries, drill by ID, filter by prefix, search by time |
 | `write_memory` | Save new memory entries with tab-indented hierarchy |
-| `update_memory` | Update the text of an existing entry or sub-node (children preserved) |
-| `append_memory` | Append new child nodes to an existing entry without overwriting it |
+| `update_memory` | Update text and/or flags of an entry or sub-node (content optional) |
+| `append_memory` | Append new child nodes to an existing entry or sub-node |
+| `export_memory` | Export all non-secret entries as text |
+| `reset_memory_cache` | Clear session cache so all entries are treated as unseen |
 | `search_memory` | Full-text search across all agent `.hmem` databases |
 
 ### Curator Tools (role: ceo)
@@ -336,11 +348,13 @@ Place an optional `hmem.config.json` in your `HMEM_PROJECT_DIR` to tune behavior
   "maxL1Chars": 120,
   "maxLnChars": 50000,
   "maxDepth": 5,
+  "maxTitleChars": 50,
   "accessCountTopN": 5,
-  "recentDepthTiers": [
-    { "count": 10, "depth": 2 },
-    { "count": 3,  "depth": 3 }
-  ],
+  "bulkReadV2": {
+    "topNewestCount": 5,
+    "topAccessCount": 3,
+    "topObsoleteCount": 3
+  },
   "prefixes": {
     "R": "Research"
   }
@@ -369,9 +383,9 @@ To add your own, add entries to the `"prefixes"` key in `hmem.config.json`. Cust
 Any entry can be marked as a **favorite** — regardless of its prefix category. Favorites always appear with their L2 detail in bulk reads, marked with `[♥]`.
 
 ```
-write_memory(prefix="D", content="...", favorite=true)     # set at creation
-update_memory(id="D0010", content="...", favorite=true)    # set on existing entry
-update_memory(id="D0010", content="...", favorite=false)   # clear the flag
+write_memory(prefix="D", content="...", favorite=true)   # set at creation
+update_memory(id="D0010", favorite=true)                 # set on existing entry
+update_memory(id="D0010", favorite=false)                # clear the flag
 ```
 
 Use favorites for reference info you need to see every session — key decisions, API endpoints, frequently consulted patterns. Use sparingly: if everything is a favorite, nothing is.
@@ -386,16 +400,29 @@ The top-N most-accessed entries are automatically promoted to L2 depth in bulk r
 
 Set to `0` to disable. Default: `5`.
 
+**Time-weighted scoring:** Raw access counts would systematically favor older entries (more time to accumulate accesses). hmem uses a logarithmic age decay instead:
+
+```
+score = access_count / log2(age_in_days + 2)
+```
+
+This means a 1-day-old entry with 5 accesses (score 3.16) outranks a 1-year-old entry with 6 accesses (score 0.70) — but a genuinely important old entry with 50 accesses (score 5.87) still stays at the top. The decay is gentle enough that consistently useful entries are never buried.
+
 | Mechanism | When useful |
 |---|---|
 | **favorite flag** | Entries you know are important from day 1 — even with zero access history |
 | **accessCountTopN** | Entries that proved important over time — emerges from actual usage |
 
-### Token-efficient bulk reads
+### Bulk reads (V2 algorithm)
+
+`read_memory()` groups entries by prefix category. Each category expands a limited number of entries (newest + most-accessed + favorites) with their L2 children; the rest show only the L1 title. Two modes:
+
+- **`discover`** (default on first read): newest-heavy — good for getting an overview after session start.
+- **`essentials`** (auto-selected after context compression): importance-heavy — more favorites + most-accessed, fewer newest.
 
-In a default `read_memory()` call, each entry shows only its **most recently added** L2 child (with that child's timestamp). A `+N more` hint indicates when additional L2 nodes exist. This keeps the bulk output compact while remaining discoverable.
+A **session cache** tracks which entries were already shown. Subsequent bulk reads suppress seen entries with Fibonacci decay `[5,3,2,1,0]`, keeping output fresh without repetition. Use `reset_memory_cache` to clear the cache.
 
-To see all children of an entry, use `read_memory(id="P0005")`.
+To see all children of an entry, use `read_memory(id="P0005")`. For a deep dive with full content, use `read_memory(id="P0005", expand=true)`. For a compact table of contents, use `read_memory(titles_only=true)`.
 
 ### Effective-date sorting
 
@@ -419,31 +446,42 @@ With 5 depth levels this yields: `[120, 12780, 25440, 38120, 50000]`
 { "maxCharsPerLevel": [120, 2500, 10000, 25000, 50000] }
 ```
 
-### Recency gradient (`recentDepthTiers`)
+### Bulk read tuning (`bulkReadV2`)
 
-Controls how deep children are inlined for the most recent entries in a default `read_memory()` call. Each tier is `{ count, depth }`: the *count* most recent entries get children inlined up to *depth*.
-
-Tiers are cumulative — the **highest applicable depth wins** for each entry position.
+Controls how many entries are expanded in each category during a bulk read:
 
 ```json
-"recentDepthTiers": [
-  { "count": 3,  "depth": 3 },   // last 3 entries  → L1 + L2 + L3
-  { "count": 10, "depth": 2 }    // last 10 entries → L1 + L2
-]
+"bulkReadV2": {
+  "topNewestCount": 5,     // expand the 5 newest entries per prefix
+  "topAccessCount": 3,     // expand the 3 most-accessed per prefix
+  "topObsoleteCount": 3    // show up to 3 obsolete entries (by access count)
+}
 ```
 
-Result:
-| Entry position | Depth inlined |
-|---|---|
-| 0–2 (most recent) | L1 + L2 + L3 |
-| 3–9 | L1 + L2 |
-| 10+ | L1 only |
+Favorites are always expanded regardless of these limits. Entries expanded by one slot (e.g. newest) don't count against another (e.g. access).
+
+---
 
-This mirrors how human memory works: you remember today's events in full detail, last week's in outline, older ones only as headlines.
+## TUI Viewer (hmem-reader.py)
+
+A terminal-based interactive viewer for browsing `.hmem` memory files. Built with [Textual](https://textual.textualize.io/).
+
+```bash
+pip install textual     # one-time dependency
+python3 hmem-reader.py         # agent selection screen (scans Agents/ directory)
+python3 hmem-reader.py THOR    # open a specific agent's memory
+python3 hmem-reader.py ~/path/to/file.hmem  # open any .hmem file directly
+```
 
-Set to `[]` to disable recency inlining (L1-only for all entries).
+**Keys:**
+| Key | Action |
+|-----|--------|
+| `r` | Toggle V2 bulk-read view (what agents see on `read_memory()`) |
+| `e` / `c` | Expand / collapse all nodes |
+| `q` | Quit |
+| `Escape` | Back to agent list |
 
-**Backward compat:** The old `"recentChildrenCount": N` key is still accepted and treated as `[{ "count": N, "depth": 2 }]`.
+The V2 view mirrors the MCP server's bulk-read algorithm — including time-weighted access scoring, per-prefix selection, active-prefix filtering, and all markers (`[♥]`, `[!]`, `[*]`, `[s]`, `[-]`) — so you can see exactly what an agent sees at session start.
 
 ---
 

package/dist/cli-init.js

@@ -316,6 +316,26 @@ export async function runInit() {
             fs.mkdirSync(absMemDir, { recursive: true });
             console.log(`  Created: ${absMemDir}`);
         }
+        // Step 4b: Example memory
+        const memoryPath = path.join(absMemDir, "memory.hmem");
+        if (!fs.existsSync(memoryPath)) {
+            const exampleIdx = await askChoice("Start with an example memory? (67 real entries from hmem development — lessons, decisions, errors, milestones)", [
+                "Start fresh (empty memory)",
+                "Install example (recommended for first-time users)",
+            ]);
+            if (exampleIdx === 1) {
+                // Find the bundled example file relative to this script (dist/cli-init.js → ../hmem_developer.hmem)
+                const exampleSrc = path.join(import.meta.dirname, "..", "hmem_developer.hmem");
+                if (fs.existsSync(exampleSrc)) {
+                    fs.copyFileSync(exampleSrc, memoryPath);
+                    console.log(`\n  Installed example memory: ${memoryPath}`);
+                    console.log(`  67 entries, 287 nodes — call read_memory() to explore.`);
+                }
+                else {
+                    console.log(`\n  Example file not found (${exampleSrc}) — starting fresh.`);
+                }
+            }
+        }
         // Step 5: Write MCP configs
         console.log("\n  Writing MCP configuration...\n");
         for (const toolId of selectedTools) {

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package/dist/hmem-config.d.ts

@@ -48,6 +48,11 @@ export interface HmemConfig {
      * Users can override or add descriptions in hmem.config.json.
      */
     prefixDescriptions: Record<string, string>;
+    /**
+     * Max characters for auto-extracted titles. Default: 30.
+     * Titles are short labels for navigation (like chapter titles in a book).
+     */
+    maxTitleChars: number;
     /**
      * V2 bulk-read algorithm tuning parameters.
      * Controls how many entries receive expanded treatment in default reads.

package/dist/hmem-config.js

@@ -34,6 +34,7 @@ export const DEFAULT_CONFIG = {
     maxDepth: 5,
     defaultReadLimit: 100,
     prefixes: { ...DEFAULT_PREFIXES },
+    maxTitleChars: 50,
     accessCountTopN: 5,
     prefixDescriptions: { ...DEFAULT_PREFIX_DESCRIPTIONS },
     bulkReadV2: {
@@ -79,6 +80,8 @@ export function loadHmemConfig(projectDir) {
             cfg.defaultReadLimit = raw.defaultReadLimit;
         if (typeof raw.accessCountTopN === "number" && raw.accessCountTopN >= 0)
             cfg.accessCountTopN = raw.accessCountTopN;
+        if (typeof raw.maxTitleChars === "number" && raw.maxTitleChars >= 10 && raw.maxTitleChars <= 120)
+            cfg.maxTitleChars = raw.maxTitleChars;
         // Prefixes: merge user-defined with defaults (user can override or add)
         if (raw.prefixes && typeof raw.prefixes === "object" && !Array.isArray(raw.prefixes)) {
             const merged = { ...DEFAULT_PREFIXES };

package/dist/hmem-config.js.map

@@ -1 +1 @@
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package/dist/hmem-store.d.ts

@@ -31,6 +31,8 @@ export interface MemoryEntry {
     prefix: string;
     seq: number;
     created_at: string;
+    /** Short label for navigation (~30 chars). Auto-extracted if not explicit. */
+    title: string;
     level_1: string;
     level_2: string | null;
     level_3: string | null;
@@ -44,6 +46,10 @@ export interface MemoryEntry {
     obsolete?: boolean;
     /** True if the agent explicitly marked this entry as a favorite. Shown with [♥] in reads. */
     favorite?: boolean;
+    /** True if the agent marked this entry as irrelevant. Hidden from bulk reads, no correction needed. */
+    irrelevant?: boolean;
+    /** True if this entry was already delivered in a previous bulk read (session cache). */
+    suppressed?: boolean;
     /**
      * Set by bulk reads to indicate why this entry received extra depth inline.
      * 'favorite' = favorite flag set, 'access' = top-N by access_count.
@@ -63,6 +69,12 @@ export interface MemoryEntry {
     isHeader?: boolean;
     children?: MemoryNode[];
     linkedEntries?: MemoryEntry[];
+    /** Number of linked entries hidden because they are obsolete. */
+    hiddenObsoleteLinks?: number;
+    /** Number of linked entries hidden because they are irrelevant. */
+    hiddenIrrelevantLinks?: number;
+    /** If this entry was reached via obsolete chain resolution, the chain of IDs traversed. */
+    obsoleteChain?: string[];
 }
 export interface MemoryNode {
     id: string;
@@ -70,10 +82,13 @@ export interface MemoryNode {
     root_id: string;
     depth: number;
     seq: number;
+    /** Short label for navigation (~30 chars). Auto-extracted from content. */
+    title: string;
     content: string;
     created_at: string;
     access_count: number;
     last_accessed: string | null;
+    favorite?: boolean;
     child_count?: number;
     children?: MemoryNode[];
 }
@@ -102,6 +117,22 @@ export interface ReadOptions {
     timeAround?: string;
     /** Internal: bypass obsolete enforcement for curator tools. */
     _curatorBypass?: boolean;
+    /** Follow obsolete chains to their correction. Default: true for ID queries. */
+    followObsolete?: boolean;
+    /** Show the full obsolete chain path (all intermediate entries). Default: false. */
+    showObsoletePath?: boolean;
+    /** Return only titles — compact listing without V2 selection, children, or links. */
+    titlesOnly?: boolean;
+    /** Expand full tree with complete node content (for deep-dive into a project). depth controls how deep. */
+    expand?: boolean;
+    /** IDs already delivered in this session — completely hidden in bulk reads. */
+    suppressedIds?: Set<string>;
+    /** Max newest entries per prefix (Fibonacci decay). */
+    maxNewNewest?: number;
+    /** Max most-accessed entries per prefix (Fibonacci decay). */
+    maxNewAccess?: number;
+    /** Bulk read mode: 'discover' (newest-heavy, default) or 'essentials' (importance-heavy). */
+    mode?: "discover" | "essentials";
 }
 export interface WriteResult {
     id: string;
@@ -154,11 +185,12 @@ export declare class HmemStore {
     stats(): {
         total: number;
         byPrefix: Record<string, number>;
+        totalChars: number;
     };
     /**
      * Update specific fields of an existing root entry (curator use only).
      */
-    update(id: string, fields: Partial<Pick<MemoryEntry, "level_1" | "level_2" | "level_3" | "level_4" | "level_5" | "links" | "min_role" | "obsolete" | "favorite">>): boolean;
+    update(id: string, fields: Partial<Pick<MemoryEntry, "level_1" | "level_2" | "level_3" | "level_4" | "level_5" | "links" | "min_role" | "obsolete" | "favorite" | "irrelevant">>): boolean;
     /**
      * Delete an entry by ID (curator use only).
      * Also deletes all associated memory_nodes.
@@ -170,7 +202,7 @@ export declare class HmemStore {
      * For sub-nodes: updates node content only.
      * Does NOT modify children — use appendChildren to extend the tree.
      */
-    updateNode(id: string, newContent: string, links?: string[], obsolete?: boolean, favorite?: boolean, curatorBypass?: boolean): boolean;
+    updateNode(id: string, newContent: string, links?: string[], obsolete?: boolean, favorite?: boolean, curatorBypass?: boolean, irrelevant?: boolean): boolean;
     /**
      * Append new child nodes under an existing entry (root or node).
      * Content is tab-indented relative to the parent:
@@ -228,9 +260,25 @@ export declare class HmemStore {
     private parseTimeWindow;
     private buildRoleFilter;
     private nextSeq;
+    /** Auto-resolve linked entries on an entry (extracted for reuse in chain resolution). */
+    private resolveEntryLinks;
     private bumpAccess;
     private bumpNodeAccess;
+    /**
+     * Follow the obsolete chain from an entry to its final valid correction.
+     * Parses [✓ID] from level_1 of each obsolete entry and follows the chain.
+     * Returns the final (non-obsolete) entry ID and the full chain of IDs traversed.
+     */
+    private resolveObsoleteChain;
     /** Fetch direct children of a node (root or compound), including their grandchild counts. */
+    /** Bulk-fetch direct child counts for multiple parent IDs in one query. */
+    private bulkChildCount;
+    /**
+     * Time-weighted access score: newer entries with fewer accesses can outrank
+     * older entries with more accesses. Uses logarithmic age decay:
+     *   score = access_count / log2(age_in_days + 2)
+     */
+    private weightedAccessScore;
     private fetchChildren;
     /**
      * Fetch only the single most recently created direct child of a parent,
@@ -253,7 +301,16 @@ export declare class HmemStore {
      */
     private nodeToEntry;
     /**
-     * Parse tab-indented content into L1 text + a list of tree nodes.
+     * Auto-extract a short title from text.
+     * Priority: text before " — " > word-boundary truncation > hard truncation.
+     */
+    private autoExtractTitle;
+    /**
+     * Parse tab-indented content into title + L1 text + a list of tree nodes.
+     *
+     * Title extraction:
+     *   - 2+ non-indented lines: first line = explicit title, rest = level_1
+     *   - 1 non-indented line: title = auto-extracted (~30 chars), level_1 = full line
      *
      * Algorithm:
      *   - seqAtParent: Map<parentId, number> — sibling counter per parent