hippo-memory 1.17.0 → 1.19.0

package/dist/src/graph-extract.js

@@ -20,7 +20,7 @@
  * skill/incident/process entities (not in the entity_type enum - needs a migration); the
  * `hippo sleep` enqueue-hook.
  */
-import { clearGraph, insertEntity, insertRelation, MAX_ENTITY_NAME_LEN } from './graph.js';
+import { clearGraph, insertEntity, insertRelation, runGraphRebuildTransaction, MAX_ENTITY_NAME_LEN } from './graph.js';
 import { loadDecisions } from './decisions.js';
 import { loadPolicies } from './policies.js';
 import { loadCustomerNotes } from './customer-notes.js';
@@ -97,8 +97,29 @@ export function extractGraph(hippoRoot, tenantId) {
         { entityType: 'customer', loadFn: loadCustomerNotes, nameOf: (r) => r.customer, textOf: (r) => [r.customer, r.note].filter(Boolean).join(' ') },
         { entityType: 'project', loadFn: loadProjectBriefs, nameOf: (r) => r.repo, textOf: (r) => [r.repo, r.summary].filter(Boolean).join(' ') },
     ];
+    // READ PHASE: load every source's rows on their own connections BEFORE the
+    // write transaction. Holding the rebuild's BEGIN IMMEDIATE write lock while
+    // opening a second connection for these reads dead-locks ('database is
+    // locked'); preloading keeps the transaction single-connection.
+    const loaded = sources.map((src) => {
+        const { rows, hitCap } = loadType(hippoRoot, tenantId, src.entityType, src.loadFn, src.nameOf, src.textOf);
+        return { entityType: src.entityType, rows, hitCap };
+    });
+    // WRITE PHASE (codex P2): clear + every insert run in ONE transaction, so two
+    // concurrent rebuilds serialize on the SQLite write lock (no duplicate rows)
+    // and a throw mid-rebuild rolls back the clear (no bricked graph). No second
+    // connection is opened inside.
+    return runGraphRebuildTransaction(hippoRoot, tenantId, (txDb) => rebuildGraphRows(txDb, hippoRoot, tenantId, loaded));
+}
+/**
+ * The deterministic rebuild WRITES, run inside `runGraphRebuildTransaction`'s
+ * transaction (`txDb` is its connection). Clears the tenant's graph then
+ * re-derives entities + `supersedes` + `references` from the preloaded rows. All
+ * DB access here is on `txDb` (or in-memory) — no other connection is opened.
+ */
+function rebuildGraphRows(txDb, hippoRoot, tenantId, loaded) {
     // Rebuild from scratch: the graph is derived, so clear then re-derive.
-    clearGraph(hippoRoot, tenantId);
+    clearGraph(hippoRoot, tenantId, txDb);
     const byType = {};
     const truncated = [];
     const allRows = [];
@@ -108,11 +129,10 @@ export function extractGraph(hippoRoot, tenantId) {
     const created = [];
     // Pass 1: entities. Skip rows whose source memory was forgotten (NULL memory_id) -
     // an entity must reference a consolidated memory (entities.memory_id is NOT NULL).
-    for (const src of sources) {
-        const { rows, hitCap } = loadType(hippoRoot, tenantId, src.entityType, src.loadFn, src.nameOf, src.textOf);
+    for (const { entityType, rows, hitCap } of loaded) {
         if (hitCap)
-            truncated.push(src.entityType);
-        byType[src.entityType] = 0;
+            truncated.push(entityType);
+        byType[entityType] = 0;
         for (const row of rows) {
             allRows.push(row);
             if (row.memoryId === null)
@@ -133,12 +153,12 @@ export function extractGraph(hippoRoot, tenantId) {
                 entityType: row.entityType,
                 name,
                 memoryId: row.memoryId,
-            });
+            }, txDb);
             const k = keyOf(row.entityType, row.e2Id);
             entityIdByKey.set(k, entity.id);
             memoryIdByKey.set(k, row.memoryId);
             created.push({ entityId: entity.id, entityType: row.entityType, memoryId: row.memoryId, name, searchText: row.searchText ?? '', superseded: row.supersededBy !== null });
-            byType[src.entityType] += 1;
+            byType[entityType] += 1;
         }
     }
     // Pass 2: `supersedes` relations. For X superseded by Y (Y is the successor), emit
@@ -165,14 +185,14 @@ export function extractGraph(hippoRoot, tenantId) {
             toEntityId: toId,
             relType: 'supersedes',
             memoryId: yMemoryId,
-        });
+        }, txDb);
         supersededPairs.add(pairKey(fromId, toId));
         relations += 1;
     }
     // Pass 3: cross-object `references` edges via conservative name matching. A source's
     // text containing a target entity's name -> "source references target". Sources +
     // targets are CREATED entities only, so insertRelation never sees a null source memory.
-    const references = extractReferences(hippoRoot, tenantId, created, supersededPairs, truncated);
+    const references = extractReferences(hippoRoot, tenantId, created, supersededPairs, truncated, txDb);
     relations += references;
     const entities = created.length;
     return { entities, relations, references, byType, truncated };
@@ -183,7 +203,7 @@ export function extractGraph(hippoRoot, tenantId) {
  * combined word-boundary regex, and emit `references` edges (self-skipped, deduped,
  * per-source capped). Returns the number of references edges written.
  */
-function extractReferences(hippoRoot, tenantId, created, supersededPairs, truncated) {
+function extractReferences(hippoRoot, tenantId, created, supersededPairs, truncated, txDb) {
     // Build the target index: normalised name -> single entity id. A name is a target only
     // if its length is in bounds; a name shared by >1 entity is AMBIGUOUS and dropped.
     const nameToId = new Map();
@@ -250,7 +270,7 @@ function extractReferences(hippoRoot, tenantId, created, supersededPairs, trunca
                 toEntityId: targetId,
                 relType: 'references',
                 memoryId: src.memoryId, // the source object's consolidated memory
-            });
+            }, txDb);
             references += 1;
         }
     }

package/dist/src/graph-extract.js.map

@@ -1 +1 @@
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package/dist/src/graph.js

@@ -95,7 +95,7 @@ function resolveConsolidatedSource(db, tenantId, memoryId, label) {
  * Insert a graph entity extracted from a consolidated memory. Throws if the source
  * memory is missing / cross-tenant / raw (the DB trigger is the backstop).
  */
-export function insertEntity(hippoRoot, tenantId, opts) {
+export function insertEntity(hippoRoot, tenantId, opts, txDb) {
     assertTenantId('insertEntity', tenantId);
     if (!GRAPH_ENTITY_TYPES.has(opts.entityType)) {
         throw new Error(`insertEntity: entityType must be one of ${Array.from(GRAPH_ENTITY_TYPES).join('|')}; got ${opts.entityType}`);
@@ -107,7 +107,8 @@ export function insertEntity(hippoRoot, tenantId, opts) {
         throw new Error(`insertEntity: name exceeds the ${MAX_ENTITY_NAME_LEN}-char cap`);
     }
     const now = new Date().toISOString();
-    const db = openHippoDb(hippoRoot);
+    const ownDb = txDb ? null : openHippoDb(hippoRoot);
+    const db = txDb ?? ownDb;
     try {
         const sourceKind = resolveConsolidatedSource(db, tenantId, opts.memoryId, 'insertEntity');
         const result = db.prepare(`
@@ -121,20 +122,22 @@ export function insertEntity(hippoRoot, tenantId, opts) {
         return rowToEntity(row);
     }
     finally {
-        closeHippoDb(db);
+        if (ownDb)
+            closeHippoDb(ownDb);
     }
 }
 /**
  * Insert a graph relation between two entities, sourced from a consolidated memory.
  * Both entities must exist in the same tenant; the source memory must be consolidated.
  */
-export function insertRelation(hippoRoot, tenantId, opts) {
+export function insertRelation(hippoRoot, tenantId, opts, txDb) {
     assertTenantId('insertRelation', tenantId);
     if (!GRAPH_RELATION_TYPES.has(opts.relType)) {
         throw new Error(`insertRelation: relType must be one of ${Array.from(GRAPH_RELATION_TYPES).join('|')}; got ${opts.relType}`);
     }
     const now = new Date().toISOString();
-    const db = openHippoDb(hippoRoot);
+    const ownDb = txDb ? null : openHippoDb(hippoRoot);
+    const db = txDb ?? ownDb;
     try {
         for (const [eid, role] of [[opts.fromEntityId, 'from'], [opts.toEntityId, 'to']]) {
             const ent = db.prepare(`SELECT tenant_id FROM entities WHERE id = ?`).get(eid);
@@ -156,7 +159,8 @@ export function insertRelation(hippoRoot, tenantId, opts) {
         return rowToRelation(row);
     }
     finally {
-        closeHippoDb(db);
+        if (ownDb)
+            closeHippoDb(ownDb);
     }
 }
 export function loadEntityById(hippoRoot, tenantId, id) {
@@ -419,13 +423,117 @@ export function markExtractionProcessed(hippoRoot, tenantId, id, status = 'proce
  * writer), so the E3.3 CI lint permits this `DELETE FROM entities`. Does NOT touch
  * graph_extraction_queue (the enqueue-hook's domain).
  */
-export function clearGraph(hippoRoot, tenantId) {
+export function clearGraph(hippoRoot, tenantId, txDb) {
     assertTenantId('clearGraph', tenantId);
-    const db = openHippoDb(hippoRoot);
+    const ownDb = txDb ? null : openHippoDb(hippoRoot);
+    const db = txDb ?? ownDb;
     try {
         const res = db.prepare(`DELETE FROM entities WHERE tenant_id = ?`).run(tenantId);
         return Number(res.changes ?? 0);
     }
+    finally {
+        if (ownDb)
+            closeHippoDb(ownDb);
+    }
+}
+/**
+ * Run a full graph rebuild for one tenant inside a single transaction. `clearGraph`
+ * + every `insertEntity`/`insertRelation` call made inside `fn` (passing the supplied
+ * `txDb`) share the one connection and its `BEGIN IMMEDIATE` write lock, so the
+ * rebuild is ATOMIC: two concurrent rebuilds serialize on the write lock (the second
+ * waits, then re-derives cleanly) instead of interleaving into duplicate rows, and a
+ * throw mid-rebuild ROLLS BACK the clear (no bricked/empty graph). The sole sanctioned
+ * place to wrap graph writes in a transaction.
+ */
+export function runGraphRebuildTransaction(hippoRoot, tenantId, fn) {
+    assertTenantId('runGraphRebuildTransaction', tenantId);
+    const db = openHippoDb(hippoRoot);
+    try {
+        db.exec('BEGIN IMMEDIATE');
+        let committed = false;
+        try {
+            const out = fn(db);
+            db.exec('COMMIT');
+            committed = true;
+            return out;
+        }
+        finally {
+            if (!committed) {
+                try {
+                    db.exec('ROLLBACK');
+                }
+                catch { /* preserve the original throw */ }
+            }
+        }
+    }
+    finally {
+        closeHippoDb(db);
+    }
+}
+// ---------------------------------------------------------------------------
+// E3 sleep enqueue-hook — producer helper + drain support
+// ---------------------------------------------------------------------------
+/**
+ * Fail-soft producer hook: mark a tenant dirty for graph re-extraction by
+ * enqueuing its consolidated mirror memory. NEVER throws into the caller — a
+ * graph-dirty signal failing must not abort a core E2 write. Graph staleness is
+ * recoverable (next sleep / manual `graph extract`); a broken `hippo decide` is
+ * not. Called POST-COMMIT from the E2 graph-source save/close mutations of
+ * decision, policy, customer_note and project_brief. A null memoryId (a
+ * forgotten mirror) is a no-op.
+ */
+export function markGraphDirty(hippoRoot, tenantId, memoryId) {
+    if (!memoryId)
+        return;
+    try {
+        enqueueExtraction(hippoRoot, tenantId, memoryId);
+    }
+    catch (err) {
+        // Logged (warn) so a SYSTEMATIC enqueue failure surfaces to operators, but
+        // swallowed so the already-committed E2 write is never rolled back.
+        console.warn(`markGraphDirty: enqueue failed for tenant=${tenantId} memory=${memoryId}: ${err.message}`);
+    }
+}
+/**
+ * The dirty tenants awaiting graph re-extraction, each with the MAX pending
+ * queue id at read time (a watermark). The sleep drain rebuilds each tenant's
+ * graph, then marks only items at or below the watermark processed, so items
+ * enqueued DURING the rebuild stay pending for the next sleep (no lost-update
+ * race). Host-wide read (the queue is per-tenant but sleep is cross-tenant).
+ */
+export function loadPendingExtractionTenants(hippoRoot) {
+    const db = openHippoDb(hippoRoot);
+    try {
+        const rows = db.prepare(`
+      SELECT tenant_id AS tenant_id, MAX(id) AS max_id
+      FROM graph_extraction_queue
+      WHERE status = 'pending'
+      GROUP BY tenant_id
+    `).all();
+        return rows.map((r) => ({ tenantId: r.tenant_id, maxPendingId: Number(r.max_id) }));
+    }
+    finally {
+        closeHippoDb(db);
+    }
+}
+/**
+ * Mark every pending queue item for a tenant with `id <= maxId` processed, in
+ * one UPDATE. Status/processed_at only, so the consolidated-source guard trigger
+ * is not involved (same as markExtractionProcessed). Returns the count marked.
+ * The `<= maxId` watermark excludes items enqueued after the drain snapshot.
+ */
+export function markPendingProcessedUpTo(hippoRoot, tenantId, maxId) {
+    assertTenantId('markPendingProcessedUpTo', tenantId);
+    const now = new Date().toISOString();
+    const db = openHippoDb(hippoRoot);
+    try {
+        const res = db.prepare(`
+      UPDATE graph_extraction_queue
+      SET status = 'processed', processed_at = ?
+      WHERE tenant_id = ? AND status = 'pending' AND id <= ?
+    `).run(now, tenantId, maxId);
+        return Number(res.changes ?? 0);
+    }
     finally {
         closeHippoDb(db);
     }

package/dist/src/graph.js.map

@@ -1 +1 @@
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package/dist/src/hooks.js

@@ -77,30 +77,30 @@ const HIPPO_OPENCODE_PLUGIN_MARKER = 'HIPPO_OPENCODE_PLUGIN_V1';
  *    marker match AND content equality, so a plugin-source revision under
  *    the same V1 marker re-writes the file on next install.
  */
-export const OPENCODE_PLUGIN_SOURCE = `// ${HIPPO_OPENCODE_PLUGIN_MARKER}
-// hippo-memory opencode plugin. DO NOT EDIT — regenerated on every
-// \`hippo hook install opencode\` from src/hooks.ts OPENCODE_PLUGIN_SOURCE
-// in https://github.com/kitfunso/hippo-memory. Local changes will be lost.
-
-export const HippoPlugin = async ({ $ }) => {
-  return {
-    event: async ({ event }) => {
-      // Defense in depth: opencode currently runs in Bun where $ is the shell
-      // template helper. A non-Bun runtime would have $ as undefined; fail
-      // closed instead of crashing the host session.
-      if (typeof $ !== "function") return;
-      try {
-        if (event.type === "session.idle") {
-          await $\`hippo session-end\`.quiet().nothrow();
-        } else if (event.type === "session.created") {
-          await $\`hippo last-sleep\`.quiet().nothrow();
-        }
-      } catch {
-        // hippo CLI not on PATH or other failure — never crash the host session.
-      }
-    },
-  };
-};
+export const OPENCODE_PLUGIN_SOURCE = `// ${HIPPO_OPENCODE_PLUGIN_MARKER}
+// hippo-memory opencode plugin. DO NOT EDIT — regenerated on every
+// \`hippo hook install opencode\` from src/hooks.ts OPENCODE_PLUGIN_SOURCE
+// in https://github.com/kitfunso/hippo-memory. Local changes will be lost.
+
+export const HippoPlugin = async ({ $ }) => {
+  return {
+    event: async ({ event }) => {
+      // Defense in depth: opencode currently runs in Bun where $ is the shell
+      // template helper. A non-Bun runtime would have $ as undefined; fail
+      // closed instead of crashing the host session.
+      if (typeof $ !== "function") return;
+      try {
+        if (event.type === "session.idle") {
+          await $\`hippo session-end\`.quiet().nothrow();
+        } else if (event.type === "session.created") {
+          await $\`hippo last-sleep\`.quiet().nothrow();
+        }
+      } catch {
+        // hippo CLI not on PATH or other failure — never crash the host session.
+      }
+    },
+  };
+};
 `;
 export { HIPPO_OPENCODE_PLUGIN_MARKER };
 function homeDir() {

package/dist/src/physics-state.js

@@ -29,20 +29,20 @@ export function bufferToFloat32(buf) {
  * Call this from db.ts MIGRATIONS array.
  */
 export function createPhysicsTable(db) {
-    db.exec(`
-    CREATE TABLE IF NOT EXISTS memory_physics (
-      memory_id TEXT PRIMARY KEY REFERENCES memories(id) ON DELETE CASCADE,
-      position_blob BLOB NOT NULL,
-      velocity_blob BLOB NOT NULL,
-      mass REAL NOT NULL,
-      charge REAL NOT NULL,
-      temperature REAL NOT NULL,
-      last_simulation TEXT NOT NULL,
-      updated_at TEXT NOT NULL DEFAULT (datetime('now'))
-    );
-
-    CREATE INDEX IF NOT EXISTS idx_memory_physics_mass
-    ON memory_physics(mass DESC);
+    db.exec(`
+    CREATE TABLE IF NOT EXISTS memory_physics (
+      memory_id TEXT PRIMARY KEY REFERENCES memories(id) ON DELETE CASCADE,
+      position_blob BLOB NOT NULL,
+      velocity_blob BLOB NOT NULL,
+      mass REAL NOT NULL,
+      charge REAL NOT NULL,
+      temperature REAL NOT NULL,
+      last_simulation TEXT NOT NULL,
+      updated_at TEXT NOT NULL DEFAULT (datetime('now'))
+    );
+
+    CREATE INDEX IF NOT EXISTS idx_memory_physics_mass
+    ON memory_physics(mass DESC);
   `);
 }
 /**
@@ -53,11 +53,11 @@ export function loadPhysicsState(db, memoryIds) {
     let rows;
     if (memoryIds && memoryIds.length > 0) {
         const placeholders = memoryIds.map(() => '?').join(',');
-        rows = db.prepare(`SELECT memory_id, position_blob, velocity_blob, mass, charge, temperature, last_simulation
+        rows = db.prepare(`SELECT memory_id, position_blob, velocity_blob, mass, charge, temperature, last_simulation
        FROM memory_physics WHERE memory_id IN (${placeholders})`).all(...memoryIds);
     }
     else {
-        rows = db.prepare(`SELECT memory_id, position_blob, velocity_blob, mass, charge, temperature, last_simulation
+        rows = db.prepare(`SELECT memory_id, position_blob, velocity_blob, mass, charge, temperature, last_simulation
        FROM memory_physics`).all();
     }
     for (const row of rows) {
@@ -79,17 +79,17 @@ export function loadPhysicsState(db, memoryIds) {
 export function savePhysicsState(db, particles) {
     if (particles.length === 0)
         return;
-    const stmt = db.prepare(`
-    INSERT INTO memory_physics (memory_id, position_blob, velocity_blob, mass, charge, temperature, last_simulation, updated_at)
-    VALUES (?, ?, ?, ?, ?, ?, ?, datetime('now'))
-    ON CONFLICT(memory_id) DO UPDATE SET
-      position_blob = excluded.position_blob,
-      velocity_blob = excluded.velocity_blob,
-      mass = excluded.mass,
-      charge = excluded.charge,
-      temperature = excluded.temperature,
-      last_simulation = excluded.last_simulation,
-      updated_at = datetime('now')
+    const stmt = db.prepare(`
+    INSERT INTO memory_physics (memory_id, position_blob, velocity_blob, mass, charge, temperature, last_simulation, updated_at)
+    VALUES (?, ?, ?, ?, ?, ?, ?, datetime('now'))
+    ON CONFLICT(memory_id) DO UPDATE SET
+      position_blob = excluded.position_blob,
+      velocity_blob = excluded.velocity_blob,
+      mass = excluded.mass,
+      charge = excluded.charge,
+      temperature = excluded.temperature,
+      last_simulation = excluded.last_simulation,
+      updated_at = datetime('now')
   `);
     db.exec('BEGIN');
     try {

package/dist/src/policies.js

@@ -38,6 +38,7 @@
  */
 import { openHippoDb, closeHippoDb } from './db.js';
 import { writeEntry, assertTenantId } from './store.js';
+import { markGraphDirty } from './graph.js';
 import { createMemory, Layer, POLICY_HALF_LIFE_DAYS } from './memory.js';
 import { appendAuditEvent } from './audit.js';
 export const VALID_POLICY_STATES = new Set([
@@ -209,6 +210,7 @@ export function savePolicy(hippoRoot, tenantId, opts, actor = 'cli') {
                 },
             });
         },
+        afterCommit: () => markGraphDirty(hippoRoot, tenantId, mem.id),
     });
     if (!savedRow) {
         throw new Error('savePolicy: afterWrite did not populate the row');
@@ -251,7 +253,9 @@ export function closePolicy(hippoRoot, tenantId, id, actor = 'cli') {
                 metadata: { policy_id: id },
             });
             db.exec('COMMIT');
-            return rowToPolicy(row);
+            const closed = rowToPolicy(row);
+            markGraphDirty(hippoRoot, tenantId, closed.memoryId);
+            return closed;
         }
         catch (e) {
             try {

package/dist/src/policies.js.map

@@ -1 +1 @@
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