higlass 2.3.0 → 2.3.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/app/scripts/BarTrack.js +6 -5
- package/app/scripts/HiGlassComponent.jsx +20 -4
- package/app/scripts/Tiled1DPixiTrack.js +6 -2
- package/app/scripts/data-fetchers/DataFetcher.js +2 -1
- package/app/scripts/services/tile-proxy.js +5 -1
- package/dist/hglib.js +16 -12
- package/dist/hglib.min.js +42 -42
- package/dist/higlass.mjs +16 -12
- package/dist/package.json +1 -1
- package/package.json +1 -1
package/dist/higlass.mjs
CHANGED
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@@ -12588,7 +12588,7 @@ const getXylofon = () => (
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/** @type {const} */
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[window, map$4((c) => c.charCodeAt(0))(
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// @ts-expect-error - A global added by `vite.config.js`.
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-
"2.3.
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+
"2.3.2"
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).map((number3) => number3 <= 999 ? `00${number3}`.slice(-3) : number3).join("")]
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);
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const gradient = (steps, width = 1, height = 100, fromX = 0, fromY = 0, toX = 0, toY = 100) => {
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@@ -49020,7 +49020,8 @@ function calculateTileAndPosInTile(tilesetInfo, maxDim, dataStartPos, zoomLevel,
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let tileWidth = null;
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const pixelsPerTile = isLegacyTilesetInfo(tilesetInfo) ? tilesetInfo.bins_per_dimension ?? 256 : 256;
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if (!isLegacyTilesetInfo(tilesetInfo)) {
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-
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const sortedResolutions = tilesetInfo.resolutions.map((x) => +x).sort((a, b) => b - a);
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tileWidth = sortedResolutions[zoomLevel] * pixelsPerTile;
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} else {
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tileWidth = maxDim / 2 ** zoomLevel;
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}
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@@ -78843,8 +78844,8 @@ let Tiled1DPixiTrack = /* @__PURE__ */ (function(_TiledPixiTrack) {
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const {
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tileX,
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tileWidth
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} = this.getTilePosAndDimensions(tile.tileData.zoomLevel, tile.tileData.tilePos, this.tilesetInfo.bins_per_dimension || this.tilesetInfo.tile_size);
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const tileXScale = linear().domain([0, this.tilesetInfo.tile_size || this.tilesetInfo.bins_per_dimension]).range([tileX, tileX + tileWidth]);
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} = this.getTilePosAndDimensions(tile.tileData.zoomLevel, tile.tileData.tilePos, this.tilesetInfo.bins_per_dimension || this.tilesetInfo.tile_size || tile.tileData.dense.length);
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const tileXScale = linear().domain([0, this.tilesetInfo.tile_size || this.tilesetInfo.bins_per_dimension || tile.tileData.dense.length]).range([tileX, tileX + tileWidth]);
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const start2 = Math.max(0, Math.round(tileXScale.invert(this._xScale.invert(visible[0]))));
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const end2 = Math.min(tile.tileData.dense.length, Math.round(tileXScale.invert(this._xScale.invert(visible[1]))));
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return [start2, end2];
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@@ -83299,11 +83300,12 @@ let BarTrack = /* @__PURE__ */ (function(_HorizontalLine1DPixi) {
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const {
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graphics
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} = tile;
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const numBins = this.tilesetInfo.tile_size || this.tilesetInfo.bins_per_dimension || tile.tileData.dense.length;
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tile.svgData = void 0;
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const {
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tileX,
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tileWidth
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} = this.getTilePosAndDimensions(tile.tileData.zoomLevel, tile.tileData.tilePos,
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} = this.getTilePosAndDimensions(tile.tileData.zoomLevel, tile.tileData.tilePos, numBins);
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const tileValues = tile.tileData.dense;
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if (tileValues.length === 0) return;
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const [valueScale, pseudocount] = this.makeValueScale(this.minValue(), this.medianVisibleValue, this.maxValue(), 0);
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@@ -83319,7 +83321,7 @@ let BarTrack = /* @__PURE__ */ (function(_HorizontalLine1DPixi) {
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return;
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}
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const stroke = colorToHex(this.options.lineStrokeColor || "blue");
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const tileXScale = linear().domain([0,
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const tileXScale = linear().domain([0, numBins]).range([tileX, tileX + tileWidth]);
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const strokeWidth = 0;
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graphics.lineStyle(strokeWidth, stroke, 1);
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const color2 = this.options.barFillColor || "grey";
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@@ -93769,7 +93771,7 @@ Object.assign(LruCache.prototype, {
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toJSON,
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toString: toString2
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});
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const version = "2.3.
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const version = "2.3.2";
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const configs = {
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..._configs,
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IS_TRACK_RANGE_SELECTABLE,
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@@ -111032,6 +111034,8 @@ ${svgString}`;
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const looseTracks = positionedTracksToAllTracks(view.tracks);
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const annotationTracks = looseTracks.filter((x) => x.type === "horizontal-gene-annotations" || x.type === "vertical-gene-annotations" || x.type === "gene-annotations");
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const chromSizesTracks = looseTracks.filter((x) => x.type === "horizontal-chromosome-labels" || x.type === "vertical-chromosome-labels" || x.type === "chromosome-labels");
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const uniqueAnnotationTilesets = new Set(annotationTracks.map((x) => x.tilesetUid));
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const uniqueChromSizesTilesets = new Set(chromSizesTracks.map((x) => x.tilesetUid));
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const getGenomePositionSearchBox = (isFocused, onFocus) => /* @__PURE__ */ React__default.createElement(
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GenomePositionSearchBox$1,
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{
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@@ -111039,10 +111043,10 @@ ${svgString}`;
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ref: (c) => {
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this.genomePositionSearchBoxes[view.uid] = c;
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},
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autocompleteId: annotationTracks.length === 1 ? annotationTracks[0].tilesetUid : null,
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autocompleteServer: annotationTracks.length === 1 ? annotationTracks[0].server : null,
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chromInfoId: chromSizesTracks.length
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chromInfoServer: chromSizesTracks.length
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autocompleteId: annotationTracks.length >= 1 && uniqueAnnotationTilesets.size === 1 ? annotationTracks[0].tilesetUid : null,
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autocompleteServer: annotationTracks.length >= 1 && uniqueAnnotationTilesets.size === 1 ? annotationTracks[0].server : null,
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chromInfoId: chromSizesTracks.length && chromSizesTracks[0].tilesetUid || view.genomePositionSearchBox?.chromInfoId || null,
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chromInfoServer: chromSizesTracks.length && chromSizesTracks[0].server || view.genomePositionSearchBox?.chromInfoServer || null,
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isFocused,
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onFocus,
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registerViewportChangedListener: (listener) => this.addScalesChangedListener(view.uid, view.uid, listener),
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@@ -111050,7 +111054,7 @@ ${svgString}`;
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setCenters: (centerX, centerY, k, animateTime) => this.setCenters[view.uid](centerX, centerY, k, false, animateTime),
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trackSourceServers: this.state.viewConfig.trackSourceServers,
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twoD: true,
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error: chromSizesTracks.length === 0 && "no chromosome track present" || chromSizesTracks.length >= 2 && "multiple chromosome tracks present" || annotationTracks.length >= 2 && "multiple annotation tracks present"
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error: chromSizesTracks.length === 0 && "no chromosome track present" || chromSizesTracks.length >= 2 && uniqueChromSizesTilesets.size > 1 && "multiple chromosome tracks present" || annotationTracks.length >= 2 && uniqueAnnotationTilesets.size > 1 && "multiple annotation tracks present"
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}
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);
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const multiTrackHeader = this.isEditable() && !this.isViewHeaderDisabled() && !this.state.viewConfig.hideHeader ? /* @__PURE__ */ React__default.createElement(ViewHeader$1, {
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package/dist/package.json
CHANGED