higlass 1.13.6 → 2.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (297) hide show
  1. package/app/scripts/AddTrackDialog.jsx +8 -1
  2. package/app/scripts/AddTrackPositionMenu.jsx +26 -5
  3. package/app/scripts/Annotations1dTrack.js +90 -251
  4. package/app/scripts/Annotations2dTrack.js +9 -2
  5. package/app/scripts/Autocomplete.jsx +1 -9
  6. package/app/scripts/BedLikeTrack.js +549 -441
  7. package/app/scripts/ContextMenuContainer.jsx +3 -0
  8. package/app/scripts/ContextMenuItem.jsx +13 -2
  9. package/app/scripts/FilledLine.js +349 -0
  10. package/app/scripts/GenomePositionSearchBox.jsx +178 -477
  11. package/app/scripts/HiGlassComponent.jsx +443 -349
  12. package/app/scripts/HiGlassComponentContext.js +5 -0
  13. package/app/scripts/SeriesListMenu.jsx +94 -44
  14. package/app/scripts/SeriesListSubmenuMixin.jsx +1 -0
  15. package/app/scripts/Tiled1DPixiTrack.js +0 -1
  16. package/app/scripts/TiledPixiTrack.js +72 -63
  17. package/app/scripts/TiledPlot.jsx +530 -77
  18. package/app/scripts/TrackRenderer.jsx +2 -2
  19. package/app/scripts/ViewContextMenu.jsx +50 -2
  20. package/app/scripts/ViewHeader.jsx +3 -2
  21. package/app/scripts/api.js +87 -6
  22. package/app/scripts/configs/index.js +6 -1
  23. package/app/scripts/configs/primitives.js +2 -0
  24. package/app/scripts/configs/tracks-info.js +1 -0
  25. package/app/scripts/data-fetchers/genbank-fetcher.js +9 -14
  26. package/app/scripts/data-fetchers/local-tile-fetcher.js +8 -2
  27. package/app/scripts/hglib.jsx +61 -70
  28. package/app/scripts/options-info.js +49 -11
  29. package/app/scripts/services/tile-proxy.js +0 -4
  30. package/app/scripts/services/worker.js +1 -0
  31. package/app/scripts/test-helpers/index.js +2 -1
  32. package/app/scripts/test-helpers/test-helpers.jsx +154 -66
  33. package/app/scripts/types.ts +68 -3
  34. package/app/scripts/utils/copy-text-to-clipboard.js +36 -0
  35. package/app/scripts/utils/decompress.js +33 -0
  36. package/app/scripts/utils/default-tracks.js +46 -0
  37. package/app/scripts/utils/get-default-track-for-datatype.js +2 -1
  38. package/app/scripts/utils/get-default-tracks-for-datatype.ts +46 -0
  39. package/app/scripts/utils/index.js +1 -0
  40. package/app/scripts/utils/positioned-tracks-to-all-tracks.js +55 -0
  41. package/app/scripts/utils/show-mouse-position.js +0 -16
  42. package/app/scripts/utils/visit-positioned-tracks.js +4 -1
  43. package/app/styles/AddTrackPositionMenu.module.scss +37 -0
  44. package/app/styles/HiGlass.module.scss +3 -1
  45. package/app/styles/TiledPlot.module.scss +20 -0
  46. package/dist/app/schema.json +525 -0
  47. package/dist/app/scripts/AddTrackDialog.d.ts +64 -0
  48. package/dist/app/scripts/AddTrackPositionMenu.d.ts +5 -0
  49. package/dist/app/scripts/Annotations1dTrack.d.ts +15 -0
  50. package/dist/app/scripts/Annotations2dTrack.d.ts +95 -0
  51. package/dist/app/scripts/ArrowheadDomainsTrack.d.ts +36 -0
  52. package/dist/app/scripts/Autocomplete.d.ts +102 -0
  53. package/dist/app/scripts/AxisPixi.d.ts +25 -0
  54. package/dist/app/scripts/BarTrack.d.ts +28 -0
  55. package/dist/app/scripts/BedLikeTrack.d.ts +84 -0
  56. package/dist/app/scripts/Button.d.ts +3 -0
  57. package/dist/app/scripts/CNVIntervalTrack.d.ts +12 -0
  58. package/dist/app/scripts/CenterTiledPlot.d.ts +3 -0
  59. package/dist/app/scripts/CenterTrack.d.ts +92 -0
  60. package/dist/app/scripts/Chromosome2DAnnotations.d.ts +10 -0
  61. package/dist/app/scripts/Chromosome2DLabels.d.ts +13 -0
  62. package/dist/app/scripts/ChromosomeGrid.d.ts +24 -0
  63. package/dist/app/scripts/ChromosomeInfo.d.ts +14 -0
  64. package/dist/app/scripts/CloseTrackMenu.d.ts +10 -0
  65. package/dist/app/scripts/CombinedTrack.d.ts +32 -0
  66. package/dist/app/scripts/ConfigTrackMenu.d.ts +10 -0
  67. package/dist/app/scripts/ConfigViewMenu.d.ts +34 -0
  68. package/dist/app/scripts/ConfigureSeriesMenu.d.ts +3 -0
  69. package/dist/app/scripts/ContextMenuContainer.d.ts +36 -0
  70. package/dist/app/scripts/ContextMenuItem.d.ts +34 -0
  71. package/dist/app/scripts/Cross.d.ts +3 -0
  72. package/dist/app/scripts/CrossRule.d.ts +24 -0
  73. package/dist/app/scripts/CustomTrackDialog.d.ts +17 -0
  74. package/dist/app/scripts/Dialog.d.ts +5 -0
  75. package/dist/app/scripts/DivergentBarTrack.d.ts +4 -0
  76. package/dist/app/scripts/DragListeningDiv.d.ts +32 -0
  77. package/dist/app/scripts/DraggableDiv.d.ts +63 -0
  78. package/dist/app/scripts/ExportLinkDialog.d.ts +21 -0
  79. package/dist/app/scripts/FilledLine.d.ts +5 -0
  80. package/dist/app/scripts/FixedTrack.d.ts +5 -0
  81. package/dist/app/scripts/GalleryTracks.d.ts +20 -0
  82. package/dist/app/scripts/GenomePositionSearchBox.d.ts +95 -0
  83. package/dist/app/scripts/HeatmapOptions.d.ts +30 -0
  84. package/dist/app/scripts/HeatmapTiledPixiTrack.d.ts +184 -0
  85. package/dist/app/scripts/HiGlassComponent.d.ts +762 -0
  86. package/dist/app/scripts/HiGlassComponentContext.d.ts +3 -0
  87. package/dist/app/scripts/HiGlassTrackComponent.d.ts +37 -0
  88. package/dist/app/scripts/Horizontal1dHeatmapTrack.d.ts +9 -0
  89. package/dist/app/scripts/Horizontal2DDomainsTrack.d.ts +21 -0
  90. package/dist/app/scripts/HorizontalChromosomeLabels.d.ts +47 -0
  91. package/dist/app/scripts/HorizontalGeneAnnotationsTrack.d.ts +25 -0
  92. package/dist/app/scripts/HorizontalHeatmapTrack.d.ts +12 -0
  93. package/dist/app/scripts/HorizontalItem.d.ts +3 -0
  94. package/dist/app/scripts/HorizontalLine1DPixiTrack.d.ts +23 -0
  95. package/dist/app/scripts/HorizontalMultivecTrack.d.ts +50 -0
  96. package/dist/app/scripts/HorizontalPoint1DPixiTrack.d.ts +5 -0
  97. package/dist/app/scripts/HorizontalRule.d.ts +22 -0
  98. package/dist/app/scripts/HorizontalTiled1DPixiTrack.d.ts +26 -0
  99. package/dist/app/scripts/HorizontalTiledPlot.d.ts +49 -0
  100. package/dist/app/scripts/HorizontalTrack.d.ts +6 -0
  101. package/dist/app/scripts/Id2DTiledPixiTrack.d.ts +10 -0
  102. package/dist/app/scripts/IdHorizontal1DTiledPixiTrack.d.ts +6 -0
  103. package/dist/app/scripts/IdVertical1DTiledPixiTrack.d.ts +7 -0
  104. package/dist/app/scripts/LeftAxisTrack.d.ts +9 -0
  105. package/dist/app/scripts/LeftTrackModifier.d.ts +29 -0
  106. package/dist/app/scripts/ListWrapper.d.ts +64 -0
  107. package/dist/app/scripts/MapboxTilesTrack.d.ts +9 -0
  108. package/dist/app/scripts/Modal.d.ts +5 -0
  109. package/dist/app/scripts/MoveableTrack.d.ts +18 -0
  110. package/dist/app/scripts/NestedContextMenu.d.ts +7 -0
  111. package/dist/app/scripts/OSMTileIdsTrack.d.ts +5 -0
  112. package/dist/app/scripts/OSMTilesTrack.d.ts +129 -0
  113. package/dist/app/scripts/OverlayTrack.d.ts +13 -0
  114. package/dist/app/scripts/PixiTrack.d.ts +174 -0
  115. package/dist/app/scripts/PlotTypeChooser.d.ts +25 -0
  116. package/dist/app/scripts/PopupMenu.d.ts +28 -0
  117. package/dist/app/scripts/RasterTilesTrack.d.ts +9 -0
  118. package/dist/app/scripts/RuleMixin.d.ts +2 -0
  119. package/dist/app/scripts/SVGTrack.d.ts +15 -0
  120. package/dist/app/scripts/SearchField.d.ts +13 -0
  121. package/dist/app/scripts/SeriesListItems.d.ts +2 -0
  122. package/dist/app/scripts/SeriesListMenu.d.ts +51 -0
  123. package/dist/app/scripts/SeriesListSubmenuMixin.d.ts +2 -0
  124. package/dist/app/scripts/SketchInlinePicker.d.ts +25 -0
  125. package/dist/app/scripts/SortableList.d.ts +22 -0
  126. package/dist/app/scripts/SquareMarkersTrack.d.ts +22 -0
  127. package/dist/app/scripts/Tiled1DPixiTrack.d.ts +60 -0
  128. package/dist/app/scripts/TiledPixiTrack.d.ts +369 -0
  129. package/dist/app/scripts/TiledPlot.d.ts +313 -0
  130. package/dist/app/scripts/TilesetFinder.d.ts +65 -0
  131. package/dist/app/scripts/TopAxisTrack.d.ts +9 -0
  132. package/dist/app/scripts/Track.d.ts +196 -0
  133. package/dist/app/scripts/TrackArea.d.ts +26 -0
  134. package/dist/app/scripts/TrackControl.d.ts +5 -0
  135. package/dist/app/scripts/TrackRenderer.d.ts +724 -0
  136. package/dist/app/scripts/UnknownPixiTrack.d.ts +7 -0
  137. package/dist/app/scripts/ValueIntervalTrack.d.ts +6 -0
  138. package/dist/app/scripts/VerticalItem.d.ts +3 -0
  139. package/dist/app/scripts/VerticalRule.d.ts +21 -0
  140. package/dist/app/scripts/VerticalTiled1DPixiTrack.d.ts +6 -0
  141. package/dist/app/scripts/VerticalTiledPlot.d.ts +50 -0
  142. package/dist/app/scripts/VerticalTrack.d.ts +6 -0
  143. package/dist/app/scripts/ViewConfigEditor.d.ts +53 -0
  144. package/dist/app/scripts/ViewContextMenu.d.ts +17 -0
  145. package/dist/app/scripts/ViewHeader.d.ts +75 -0
  146. package/dist/app/scripts/ViewportTracker2D.d.ts +17 -0
  147. package/dist/app/scripts/ViewportTracker2DPixi.d.ts +11 -0
  148. package/dist/app/scripts/ViewportTrackerHorizontal.d.ts +17 -0
  149. package/dist/app/scripts/ViewportTrackerVertical.d.ts +17 -0
  150. package/dist/app/scripts/api.d.ts +640 -0
  151. package/dist/app/scripts/configs/available-track-types.d.ts +2 -0
  152. package/dist/app/scripts/configs/colormaps.d.ts +2 -0
  153. package/dist/app/scripts/configs/datatype-to-track-type.d.ts +4 -0
  154. package/dist/app/scripts/configs/default-tracks-for-datatype.d.ts +38 -0
  155. package/dist/app/scripts/configs/dense-data-extrema-config.d.ts +2 -0
  156. package/dist/app/scripts/configs/globals.d.ts +5 -0
  157. package/dist/app/scripts/configs/index.d.ts +16 -0
  158. package/dist/app/scripts/configs/positions-by-datatype.d.ts +2 -0
  159. package/dist/app/scripts/configs/primitives.d.ts +20 -0
  160. package/dist/app/scripts/configs/themes.d.ts +3 -0
  161. package/dist/app/scripts/configs/tracks-info-by-type.d.ts +4 -0
  162. package/dist/app/scripts/configs/tracks-info.d.ts +24 -0
  163. package/dist/app/scripts/d3-context-menu.d.ts +2 -0
  164. package/dist/app/scripts/data-fetchers/DataFetcher.d.ts +151 -0
  165. package/dist/app/scripts/data-fetchers/genbank-fetcher.d.ts +86 -0
  166. package/dist/app/scripts/data-fetchers/index.d.ts +3 -0
  167. package/dist/app/scripts/data-fetchers/local-tile-fetcher.d.ts +47 -0
  168. package/dist/app/scripts/gosling-exports.d.ts +17 -0
  169. package/dist/app/scripts/hglib.d.ts +24 -0
  170. package/dist/app/scripts/hocs/with-modal.d.ts +19 -0
  171. package/dist/app/scripts/hocs/with-pub-sub.d.ts +22 -0
  172. package/dist/app/scripts/hocs/with-theme.d.ts +13 -0
  173. package/dist/app/scripts/icons.d.ts +161 -0
  174. package/dist/app/scripts/mixwith.d.ts +27 -0
  175. package/dist/app/scripts/options-info.d.ts +1355 -0
  176. package/dist/app/scripts/plugins/available-for-plugins.d.ts +2338 -0
  177. package/dist/app/scripts/plugins/get-data-fetcher.d.ts +2 -0
  178. package/dist/app/scripts/plugins/index.d.ts +2 -0
  179. package/dist/app/scripts/services/chrom-info.d.ts +10 -0
  180. package/dist/app/scripts/services/dom-event.d.ts +7 -0
  181. package/dist/app/scripts/services/element-resize-listener.d.ts +5 -0
  182. package/dist/app/scripts/services/index.d.ts +5 -0
  183. package/dist/app/scripts/services/tile-proxy.d.ts +180 -0
  184. package/dist/app/scripts/services/worker.d.ts +157 -0
  185. package/dist/app/scripts/symbol.d.ts +13 -0
  186. package/dist/app/scripts/test-helpers/index.d.ts +1 -0
  187. package/dist/app/scripts/test-helpers/test-helpers.d.ts +33 -0
  188. package/dist/app/scripts/track-utils.d.ts +73 -0
  189. package/dist/app/scripts/types.d.ts +199 -0
  190. package/dist/app/scripts/utils/DenseDataExtrema1D.d.ts +88 -0
  191. package/dist/app/scripts/utils/DenseDataExtrema2D.d.ts +97 -0
  192. package/dist/app/scripts/utils/LruCache.d.ts +44 -0
  193. package/dist/app/scripts/utils/abs-to-chr.d.ts +14 -0
  194. package/dist/app/scripts/utils/accessor-transposition.d.ts +14 -0
  195. package/dist/app/scripts/utils/add-arrays.d.ts +18 -0
  196. package/dist/app/scripts/utils/add-class.d.ts +8 -0
  197. package/dist/app/scripts/utils/add-event-listener-once.d.ts +11 -0
  198. package/dist/app/scripts/utils/assert.d.ts +17 -0
  199. package/dist/app/scripts/utils/background-task-scheduler.d.ts +47 -0
  200. package/dist/app/scripts/utils/base64-to-canvas.d.ts +9 -0
  201. package/dist/app/scripts/utils/chr-to-abs.d.ts +10 -0
  202. package/dist/app/scripts/utils/chrom-info-bisector.d.ts +4 -0
  203. package/dist/app/scripts/utils/clone-event.d.ts +12 -0
  204. package/dist/app/scripts/utils/color-domain-to-rgba-array.d.ts +13 -0
  205. package/dist/app/scripts/utils/color-to-hex.d.ts +9 -0
  206. package/dist/app/scripts/utils/color-to-rgba.d.ts +9 -0
  207. package/dist/app/scripts/utils/copy-text-to-clipboard.d.ts +2 -0
  208. package/dist/app/scripts/utils/data-to-genomic-loci.d.ts +11 -0
  209. package/dist/app/scripts/utils/debounce.d.ts +5 -0
  210. package/dist/app/scripts/utils/dec-to-hex-str.d.ts +8 -0
  211. package/dist/app/scripts/utils/decompress.d.ts +27 -0
  212. package/dist/app/scripts/utils/default-tracks.d.ts +3 -0
  213. package/dist/app/scripts/utils/dict-from-tuples.d.ts +11 -0
  214. package/dist/app/scripts/utils/dict-items.d.ts +18 -0
  215. package/dist/app/scripts/utils/dict-keys.d.ts +10 -0
  216. package/dist/app/scripts/utils/dict-values.d.ts +8 -0
  217. package/dist/app/scripts/utils/download.d.ts +7 -0
  218. package/dist/app/scripts/utils/expand-combined-tracks.d.ts +11 -0
  219. package/dist/app/scripts/utils/fake-pub-sub.d.ts +11 -0
  220. package/dist/app/scripts/utils/fill-in-min-widths.d.ts +44 -0
  221. package/dist/app/scripts/utils/flatten.d.ts +9 -0
  222. package/dist/app/scripts/utils/for-each.d.ts +9 -0
  223. package/dist/app/scripts/utils/forward-event.d.ts +7 -0
  224. package/dist/app/scripts/utils/genome-loci-to-pixels.d.ts +9 -0
  225. package/dist/app/scripts/utils/genomic-range-to-chromosome-chunks.d.ts +21 -0
  226. package/dist/app/scripts/utils/get-aggregation-function.d.ts +10 -0
  227. package/dist/app/scripts/utils/get-default-track-for-datatype.d.ts +21 -0
  228. package/dist/app/scripts/utils/get-default-tracks-for-datatype.d.ts +3 -0
  229. package/dist/app/scripts/utils/get-element-dim.d.ts +7 -0
  230. package/dist/app/scripts/utils/get-higlass-components.d.ts +7 -0
  231. package/dist/app/scripts/utils/get-track-by-uid.d.ts +7 -0
  232. package/dist/app/scripts/utils/get-track-conf-from-hgc.d.ts +10 -0
  233. package/dist/app/scripts/utils/get-track-obj-by-id.d.ts +2 -0
  234. package/dist/app/scripts/utils/get-track-position-by-uid.d.ts +13 -0
  235. package/dist/app/scripts/utils/get-xylofon.d.ts +2 -0
  236. package/dist/app/scripts/utils/gradient.d.ts +14 -0
  237. package/dist/app/scripts/utils/has-class.d.ts +8 -0
  238. package/dist/app/scripts/utils/has-parent.d.ts +9 -0
  239. package/dist/app/scripts/utils/hex-string-to-int.d.ts +14 -0
  240. package/dist/app/scripts/utils/index.d.ts +89 -0
  241. package/dist/app/scripts/utils/interval-tree.d.ts +109 -0
  242. package/dist/app/scripts/utils/into-the-void.d.ts +6 -0
  243. package/dist/app/scripts/utils/is-track-or-child-track.d.ts +7 -0
  244. package/dist/app/scripts/utils/is-track-range-selectable.d.ts +2 -0
  245. package/dist/app/scripts/utils/is-within.d.ts +12 -0
  246. package/dist/app/scripts/utils/lat-to-y.d.ts +9 -0
  247. package/dist/app/scripts/utils/lng-to-x.d.ts +8 -0
  248. package/dist/app/scripts/utils/load-chrom-infos.d.ts +8 -0
  249. package/dist/app/scripts/utils/map.d.ts +13 -0
  250. package/dist/app/scripts/utils/max-non-zero.d.ts +6 -0
  251. package/dist/app/scripts/utils/max.d.ts +10 -0
  252. package/dist/app/scripts/utils/min-non-zero.d.ts +6 -0
  253. package/dist/app/scripts/utils/min.d.ts +10 -0
  254. package/dist/app/scripts/utils/mod.d.ts +9 -0
  255. package/dist/app/scripts/utils/ndarray-assign.d.ts +2 -0
  256. package/dist/app/scripts/utils/ndarray-flatten.d.ts +2 -0
  257. package/dist/app/scripts/utils/ndarray-to-list.d.ts +2 -0
  258. package/dist/app/scripts/utils/numericify-version.d.ts +6 -0
  259. package/dist/app/scripts/utils/obj-vals.d.ts +8 -0
  260. package/dist/app/scripts/utils/or.d.ts +8 -0
  261. package/dist/app/scripts/utils/parse-chromsizes-rows.d.ts +34 -0
  262. package/dist/app/scripts/utils/pixi-text-to-svg.d.ts +2 -0
  263. package/dist/app/scripts/utils/positioned-tracks-to-all-tracks.d.ts +26 -0
  264. package/dist/app/scripts/utils/q.d.ts +18 -0
  265. package/dist/app/scripts/utils/rad-to-deg.d.ts +7 -0
  266. package/dist/app/scripts/utils/range-query-2d.d.ts +17 -0
  267. package/dist/app/scripts/utils/reduce.d.ts +14 -0
  268. package/dist/app/scripts/utils/rel-to-abs-chrom-pos.d.ts +10 -0
  269. package/dist/app/scripts/utils/remove-class.d.ts +7 -0
  270. package/dist/app/scripts/utils/reset-d3-brush-style.d.ts +10 -0
  271. package/dist/app/scripts/utils/rgb-to-hex.d.ts +8 -0
  272. package/dist/app/scripts/utils/scales-center-and-k.d.ts +12 -0
  273. package/dist/app/scripts/utils/scales-to-genome-loci.d.ts +3 -0
  274. package/dist/app/scripts/utils/segments-to-rows.d.ts +15 -0
  275. package/dist/app/scripts/utils/selected-items-to-cum-weights.d.ts +12 -0
  276. package/dist/app/scripts/utils/selected-items-to-size.d.ts +13 -0
  277. package/dist/app/scripts/utils/show-mouse-position.d.ts +54 -0
  278. package/dist/app/scripts/utils/some.d.ts +10 -0
  279. package/dist/app/scripts/utils/sum.d.ts +8 -0
  280. package/dist/app/scripts/utils/svg-line.d.ts +2 -0
  281. package/dist/app/scripts/utils/throttle-and-debounce.d.ts +33 -0
  282. package/dist/app/scripts/utils/tile-to-canvas.d.ts +9 -0
  283. package/dist/app/scripts/utils/timeout.d.ts +3 -0
  284. package/dist/app/scripts/utils/to-void.d.ts +3 -0
  285. package/dist/app/scripts/utils/total-track-pixel-height.d.ts +27 -0
  286. package/dist/app/scripts/utils/trim-trailing-slash.d.ts +7 -0
  287. package/dist/app/scripts/utils/type-guards.d.ts +36 -0
  288. package/dist/app/scripts/utils/value-to-color.d.ts +12 -0
  289. package/dist/app/scripts/utils/visit-positioned-tracks.d.ts +18 -0
  290. package/dist/app/scripts/utils/visit-tracks.d.ts +9 -0
  291. package/dist/esm.html +1 -3
  292. package/dist/hglib.js +65302 -79868
  293. package/dist/hglib.min.js +104 -112
  294. package/dist/higlass.mjs +64214 -78780
  295. package/dist/index.html +1 -3
  296. package/dist/package.json +134 -0
  297. package/package.json +13 -10

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