higlass 1.11.11 → 1.12.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +19 -10
- package/app/scripts/{AddTrackDialog.js → AddTrackDialog.jsx} +27 -26
- package/app/scripts/{AddTrackPositionMenu.js → AddTrackPositionMenu.jsx} +18 -15
- package/app/scripts/{Autocomplete.js → Autocomplete.jsx} +1 -0
- package/app/scripts/{Button.js → Button.jsx} +7 -6
- package/app/scripts/CenterTiledPlot.jsx +7 -0
- package/app/scripts/{CenterTrack.js → CenterTrack.jsx} +42 -41
- package/app/scripts/ChromosomeGrid.js +8 -16
- package/app/scripts/CloseTrackMenu.jsx +27 -0
- package/app/scripts/CombinedTrack.js +16 -1
- package/app/scripts/{ConfigTrackMenu.js → ConfigTrackMenu.jsx} +12 -12
- package/app/scripts/{ConfigViewMenu.js → ConfigViewMenu.jsx} +35 -36
- package/app/scripts/{ConfigureSeriesMenu.js → ConfigureSeriesMenu.jsx} +2 -2
- package/app/scripts/{ContextMenuContainer.js → ContextMenuContainer.jsx} +5 -7
- package/app/scripts/ContextMenuItem.jsx +37 -0
- package/app/scripts/Cross.jsx +9 -0
- package/app/scripts/CustomTrackDialog.jsx +38 -0
- package/app/scripts/DataFetcher.js +6 -6
- package/app/scripts/{Dialog.js → Dialog.jsx} +40 -31
- package/app/scripts/{DragListeningDiv.js → DragListeningDiv.jsx} +10 -12
- package/app/scripts/{DraggableDiv.js → DraggableDiv.jsx} +25 -24
- package/app/scripts/{ExportLinkDialog.js → ExportLinkDialog.jsx} +2 -2
- package/app/scripts/{GalleryTracks.js → GalleryTracks.jsx} +10 -9
- package/app/scripts/{GenomePositionSearchBox.js → GenomePositionSearchBox.jsx} +23 -21
- package/app/scripts/HeatmapTiledPixiTrack.js +18 -30
- package/app/scripts/{HiGlassComponent.js → HiGlassComponent.jsx} +213 -86
- package/app/scripts/HorizontalChromosomeLabels.js +3 -6
- package/app/scripts/HorizontalHeatmapTrack.js +2 -6
- package/app/scripts/HorizontalRule.js +2 -0
- package/app/scripts/{HorizontalTiledPlot.js → HorizontalTiledPlot.jsx} +20 -19
- package/app/scripts/LeftTrackModifier.js +8 -0
- package/app/scripts/{Modal.js → Modal.jsx} +14 -9
- package/app/scripts/{NestedContextMenu.js → NestedContextMenu.jsx} +6 -7
- package/app/scripts/OSMTilesTrack.js +2 -6
- package/app/scripts/OverlayTrack.js +2 -0
- package/app/scripts/{PopupMenu.js → PopupMenu.jsx} +1 -1
- package/app/scripts/SearchField.js +5 -3
- package/app/scripts/{SeriesListItems.js → SeriesListItems.jsx} +6 -6
- package/app/scripts/{SeriesListMenu.js → SeriesListMenu.jsx} +29 -32
- package/app/scripts/Tiled1DPixiTrack.js +2 -5
- package/app/scripts/TiledPixiTrack.js +3 -1
- package/app/scripts/{TiledPlot.js → TiledPlot.jsx} +45 -17
- package/app/scripts/{TilesetFinder.js → TilesetFinder.jsx} +7 -7
- package/app/scripts/Track.js +17 -1
- package/app/scripts/{TrackControl.js → TrackControl.jsx} +44 -50
- package/app/scripts/{TrackRenderer.js → TrackRenderer.jsx} +44 -38
- package/app/scripts/VerticalRule.js +1 -0
- package/app/scripts/{VerticalTiledPlot.js → VerticalTiledPlot.jsx} +27 -18
- package/app/scripts/{ViewConfigEditor.js → ViewConfigEditor.jsx} +66 -58
- package/app/scripts/{ViewContextMenu.js → ViewContextMenu.jsx} +13 -13
- package/app/scripts/{ViewHeader.js → ViewHeader.jsx} +24 -23
- package/app/scripts/ViewportTracker2D.js +1 -2
- package/app/scripts/ViewportTrackerHorizontal.js +1 -2
- package/app/scripts/ViewportTrackerVertical.js +1 -2
- package/app/scripts/api.js +17 -10
- package/app/scripts/configs/available-for-plugins.js +4 -3
- package/app/scripts/configs/index.js +1 -47
- package/app/scripts/configs/positions-by-datatype.js +2 -0
- package/app/scripts/configs/primitives.js +47 -0
- package/app/scripts/configs/tracks-info.js +2 -2
- package/app/scripts/d3-context-menu.js +1 -0
- package/app/scripts/data-fetchers/get-data-fetcher.js +7 -2
- package/app/scripts/{hglib.js → hglib.jsx} +1 -1
- package/app/scripts/{icons.js → icons.jsx} +24 -13
- package/app/scripts/mixwith.js +2 -0
- package/app/scripts/services/tile-proxy.js +1 -5
- package/app/scripts/utils/abs-to-chr.js +1 -1
- package/app/scripts/utils/dec-to-hex-str.js +1 -1
- package/app/scripts/utils/dict-items.js +0 -1
- package/app/scripts/utils/dict-keys.js +0 -1
- package/app/scripts/utils/dict-values.js +0 -1
- package/app/scripts/utils/index.js +1 -0
- package/app/scripts/utils/range-query-2d.js +4 -1
- package/app/scripts/utils/selected-items-to-size.js +2 -3
- package/app/scripts/utils/{test-helpers.js → test-helpers.jsx} +32 -10
- package/app/scripts/utils/timeout.js +4 -1
- package/app/scripts/utils/value-to-color.js +14 -17
- package/app/scripts/worker.js +8 -4
- package/app/styles/GenomePositionSearchBox.module.scss +13 -15
- package/app/styles/HiGlass.scss +5 -5
- package/app/styles/TilesetFinder.css +94 -74
- package/app/styles/TrackControl.module.scss +17 -20
- package/app/styles/TrackOptions.css +23 -24
- package/app/styles/ViewHeader.module.scss +18 -18
- package/dist/hglib.css +1724 -1
- package/dist/hglib.js +80473 -154092
- package/dist/hglib.min.js +382 -2
- package/dist/index.html +251 -250
- package/package.json +57 -117
- package/CHANGELOG.md +0 -1415
- package/app/index.html +0 -273
- package/app/scripts/CenterTiledPlot.js +0 -5
- package/app/scripts/CloseTrackMenu.js +0 -25
- package/app/scripts/ContextMenuItem.js +0 -35
- package/app/scripts/Cross.js +0 -7
- package/app/scripts/factories/index.js +0 -1
- /package/app/scripts/{FixedTrack.js → FixedTrack.jsx} +0 -0
- /package/app/scripts/{HeatmapOptions.js → HeatmapOptions.jsx} +0 -0
- /package/app/scripts/{HiGlassTrackComponent.js → HiGlassTrackComponent.jsx} +0 -0
- /package/app/scripts/{HorizontalItem.js → HorizontalItem.jsx} +0 -0
- /package/app/scripts/{HorizontalTrack.js → HorizontalTrack.jsx} +0 -0
- /package/app/scripts/{ListWrapper.js → ListWrapper.jsx} +0 -0
- /package/app/scripts/{MoveableTrack.js → MoveableTrack.jsx} +0 -0
- /package/app/scripts/{PlotTypeChooser.js → PlotTypeChooser.jsx} +0 -0
- /package/app/scripts/{SeriesListSubmenuMixin.js → SeriesListSubmenuMixin.jsx} +0 -0
- /package/app/scripts/{SketchInlinePicker.js → SketchInlinePicker.jsx} +0 -0
- /package/app/scripts/{SortableList.js → SortableList.jsx} +0 -0
- /package/app/scripts/{TrackArea.js → TrackArea.jsx} +0 -0
- /package/app/scripts/{VerticalItem.js → VerticalItem.jsx} +0 -0
- /package/app/scripts/{VerticalTrack.js → VerticalTrack.jsx} +0 -0
- /package/app/scripts/hocs/{with-modal.js → with-modal.jsx} +0 -0
- /package/app/scripts/hocs/{with-pub-sub.js → with-pub-sub.jsx} +0 -0
- /package/app/scripts/hocs/{with-theme.js → with-theme.jsx} +0 -0
package/CHANGELOG.md
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# Release notes
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## v1.11.11
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- Bump terser-webpack-plugin version to fix build issue
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## v1.11.10
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- Remove dependency on `cwise`
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- Fix color issue in GeneAnnotation SVG export
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## v1.11.8
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- Remove react-bootstrap from the GenomePositionSearchBox
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- Make vertical chromosome labels as well as loading status labels readable in vertical tracks
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- Added an option menu item for rectangle domain fill opacity
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- Added a parameter in `zoomToGene` to allow specifying padding around gene
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- Add data fetchers to `AVAILABLE_FOR_PLUGINS`
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- Update track list in `AVAILABLE_FOR_PLUGINS`
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- Correctly setup initial scales of vertical tracks when the width of a center track is zero.
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- Config-wise, allow axis-specific location locks (e.g., lock the vertical axis in a view to the horizontal axis in another).
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- Add `reload` implementation to `HiGlassComponenet` API.
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_[Detailed changes since v1.11.5](https://github.com/higlass/higlass/compare/v1.11.7...develop)_
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## v1.11.7
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- Show visual clue when tileset info is not available ("Tileset info not found. ...").
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- Properly initialize the style of 1D brushes (`viewport-projection-horizontal` and `viewport-projection-vertical`).
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_[Detailed changes since v1.11.5](https://github.com/higlass/higlass/compare/v1.11.6...v1.11.7)_
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## v1.11.6
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- Allow implementing plugin viewport projection tracks using `config.projection`.
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- Change the default value of `zoomLimits` to `[1, null]`, which means highest zoom resolution is 1bp.
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_[Detailed changes since v1.11.5](https://github.com/higlass/higlass/compare/v1.11.5...v1.11.6)_
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## v1.11.5
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- Add a `zoomToGene` API that allows to zoom a HiGlass view to a location near a certain gene.
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- Add a `suggestGene` API that returns a list of genes of top match for a given keyword based on `autocompleteServer`.
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- Add a top-level option, `compactLayout`, that controls to allow adding vertical gaps between views.
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_[Detailed changes since v1.11.4](https://github.com/higlass/higlass/compare/v1.11.4...v1.11.5)_
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## v1.11.4
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- Fix colorbar error on degenerate colorscale
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- Update horizontal heatmap to regular heatmap rendering so that they can use the same options
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_[Detailed changes since v1.11.3](https://github.com/higlass/higlass/compare/v1.11.3...v1.11.4)_
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## v1.11.3
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- Show a more comprehensive list of track types in the track config menu
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- Break up HiGlassComponentTests
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- Show only integer ticks in `HorizontalChromosomeLabels` tracks because it is misleading to have decimal values in genomic coordinates.
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- Add a `reverseOrientation` option in `HorizontalChromosomeLabels` tracks to allow aligning tick labels and lines on the top or left.
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- Make overlays SVG exportable
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- Fix a bug that led to the app crash when `selectRows` is set to an empty array `[]`
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- Break up and turn off some tests
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- Fix gene annotation mouseover
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_[Detailed changes since v1.11.2](https://github.com/higlass/higlass/compare/v1.11.2...v1.11.3)_
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## v1.11.2
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- Fix registration of plugin tracks
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- Don't try to render names of filler annotations
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_[Detailed changes since v1.11.1](https://github.com/higlass/higlass/compare/v1.11.1...v1.11.2)_
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## v1.11.1
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- Fix multivec SVG export
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- Added `ChromosomeInfo` and `SearchField` classes to `AVAILABLE_TO_PLUGINS`.
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_[Detailed changes since v1.11.0](https://github.com/higlass/higlass/compare/v1.11.0...v1.11.1)_
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## v1.11.0
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- Make gene annotations rotatable so that they can be added on the left
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- Tracks can now modify their own dimensions by publishing `trackDimensionsModified`.
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- Fixed a bug preventing usage of `data.url` and HorizontalMultivecTrack server-side aggregation simultaneously.
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- Fixed a bug preventing an updated value of `track.options.selectRows` from triggering a HorizontalMultivecTrack track update when using server-side aggregation (`track.options.selectRowsAggregationMethod === 'server'`).
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- Added the JS API `.on('geneSearch', callback)` option for subscribing to gene search events.
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- Simplify plugin track registry
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- Implemented plugin data fetchers.
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_[Detailed changes since v1.10.2](https://github.com/higlass/higlass/compare/v1.10.2...v1.11.0)_
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## v1.10.2
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- Remove view config validation from `hgApi.getViewConfig()` and `hgApi.setViewConfig()` and instead move it into a new method called `hgApi.validateViewConfig(viewConfig, { verbose: false } = {})`
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_[Detailed changes since v1.10.1](https://github.com/higlass/higlass/compare/v1.10.1...v1.10.2)_
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## v1.10.1
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- Added the `selectRowsAggregationMethod` option for the `horizontal-multivec` track to enable server-side aggregation if set to `"server"` rather than the default `"client"`.
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- In the view config, moved the `fileUrl` track property under the `data` property: `data: { url, server, filetype }`.
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_[Detailed changes since v1.10.0](https://github.com/higlass/higlass/compare/v1.10.0...v1.10.1)_
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## v1.10.0
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- Fixed horizontal and vertical cross sections
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- Changed the style for the mouse over dialog to have a maximum width of 50 and to break words so that it doesn't go off the screen if there's a very long mouseover text.
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- Ability to load genome position search box chromosome sizes from an arbitrary location
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- Plugin tracks can provide their own config menu options
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- Remove horizontal-_ and vertical-_ prefixes from track names
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- Load matrices with "None" data transform without crashing
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- Add a view for showing schema log messages when JSON codes are edited in a config view.
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_[Detailed changes since v1.9.5](https://github.com/higlass/higlass/compare/v1.9.5...v1.10.0)_
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## v1.9.5
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- Reader for text genbank data (i.e. not pulled from a url)
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_[Detailed changes since v1.9.4](https://github.com/higlass/higlass/compare/v1.9.4...v.1.9.5)_
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## v1.9.4
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- Zooming can now be restricted by specifying `zoomLimits` in the viewconf.
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- Fixed bug where the track config menu improperly positioned when clicked twice.
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- Update the heatmap option interface to allow seeing the preview when a color picker is opened.
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- Don't try to assign a color value scale if the colorEncoding is set to itemRgb. itemRgb means that the color is present directly in the annotation
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- Add an option to separate the + / - strand annotations in the bedlike track
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_[Detailed changes since v1.9.3](https://github.com/higlass/higlass/compare/v1.9.3...v.1.9.4)_
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- Set background of new heatmap tracks in a combined track to `transparent` when added via the track context menu.
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_[Detailed changes since v1.9.2](https://github.com/higlass/higlass/compare/v1.9.2...v.1.9.3)_
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_[Detailed changes since v1.9.1](https://github.com/higlass/higlass/compare/v1.9.1...v1.9.2)_
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- Added support for aggregation of `horizontal-multivec` rows by passing arrays of row indices to the `selectRows` option. With this addition also comes the track options `selectRowsAggregationMode` (for specifying an aggregation function, "mean", "sum", "variance", "deviation") and `selectRowsAggregationWithRelativeHeight` (boolean) to determine whether rows representing groups of indices have 1-unit heights or `group.length`-unit heights.
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- Added the JS API `.on('wheel', callback)` option for subscribing to mouse wheel events.
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_[Detailed changes since v1.9.0](https://github.com/higlass/higlass/compare/v1.9.0...v1.9.1)_
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- Support for gene annotation "filler" regions
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- Clickable gene annotations
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- Slightly updated gene annotation style with arrowheads at the ends
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- Remove Content-Type headers when fetching genbank files
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- Added the fields `xRange` and `yRange` the object returned by the JavaScript API `.getLocation()` method.
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- Fixed blurry exported heatmap SVG graphics issue using the `image-rendering` CSS property.
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- Enabled view-based scaling
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- Left and right tracks can now be value scale locked
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- Added the attributes `projectionXDomain` and `projectionYDomain` to the `viewport-projection-horizontal` and `viewport-projection-vertical`, respectively, and both to the `viewport-projection-center`, to support the case in which the `fromViewUid` attribute is undefined.
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188
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- Added the `.on('createSVG')` listener to the JS API, with the corresponding `.off('createSVG')`, for manipulating exported SVGs before they are returned.
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189
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- Added `zeroValueColor` as an option for the `horizontal-multivec` track, to specify the color mapping for zero data values.
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190
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- Track resizing events now trigger the `.on('viewConfig')` JS API callback.
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191
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- Allowed K and M notations when entering genomic coordinates in searchbox (e.g., "chr1:150M-155M").
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192
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- Specify raw tiles locally in the viewconf
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193
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-
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194
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_[Detailed changes since v1.8.4](https://github.com/higlass/higlass/compare/v1.8.4...v1.9.0)_
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-
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196
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## v1.8.4
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197
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-
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198
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- Corrupted lock bug fix
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199
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- Export to SVG with no loaded tiles bug fix
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200
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- `selectRows` option for Horizontal Multivec Tracks
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201
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-
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202
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_[Detailed changes since v1.8.3](https://github.com/higlass/higlass/compare/v1.8.3...v1.8.4)_
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-
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204
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## v1.8.3
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-
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206
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- Added "empty" track
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-
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_[Detailed changes since v1.8.2](https://github.com/higlass/higlass/compare/v1.8.2...v1.8.3)_
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-
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210
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## v1.8.2
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211
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-
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212
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- Fixed horizontal track not rendering properly in vertical position bug
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213
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-
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_[Detailed changes since v1.8.1](https://github.com/higlass/higlass/compare/v1.8.1...v1.8.2)_
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-
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216
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## v1.8.1
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217
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-
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218
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- Prettified JS code
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219
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- Added `labelShowAssembly` as an option to allow hiding the assembly in track label (e.g. `hg19 |` text)
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220
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- Added `tickFormat` and `tickPosition` options to the chromosome labels track
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221
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- Enabled the colorbar slider by adding the options `colorbarPosition` and `colorbarBackgroundColor` for the `horizontal-multivec`
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- Added release notes to docs.
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223
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- Added support for selecting and filtering rows of the `horizontal-multivec` track via the `selectRows` option.
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-
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225
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_[Detailed changes since v1.8.0](https://github.com/higlass/higlass/compare/v1.8.0...v1.8.1)_
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-
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227
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## v1.8.0
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228
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-
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229
|
-
- Added the option to flip 2D annotations across the diagonal
|
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230
|
-
- Update heatmap docs with colorRange parameter
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231
|
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- Update BedLikeTrack to display strand-specific entries
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232
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- Added 'segment' style to the BedLikeTrack
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233
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- Updated default plot types when adding tracks
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234
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- When adding multiple tracks at once that have different datatype, each track is added with its default plot type. The plot type chooser is hidden.
|
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235
|
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- In `HorizontalLine1DPixiTrack`, make sure that `this.valueScale` is set when `getMouseOverHtml()` is called.
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236
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- VerticalRule, HorizontalRule, and CrossRule tracks included in SVG and PNG exports.
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237
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-
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238
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_[Detailed changes since v1.7.2](https://github.com/higlass/higlass/compare/v1.7.2...v1.8.0)_
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239
|
-
|
|
240
|
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## v1.7.2
|
|
241
|
-
|
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242
|
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- Refactored the scroll options and `bounded` into a new property called `sizeMode`. There are now 4 different size modes, which determine the visible height of the HiGlass instance:
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|
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1. `default`: the height is given by the sum of the tracks' heights
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244
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2. `bounded`: tells the HiGlass component to bind the height to the parent container by dynamically adjusting the height of center tracks.
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245
|
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3. `scroll`: will activate scrolling by stretching HiGlass' drawing surface to the extent of parent DOM element and hiding overflowing content in the x direction and allowing to scroll when content overflows in the y direction.
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246
|
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4. `overflow`: same as `scroll` except that you can't scroll. This mode is only needed when you want to dynamically switch between scrolling and pan+zooming.
|
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247
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-
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248
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_[Detailed changes since v1.7.0](https://github.com/higlass/higlass/compare/v1.7.0...v1.7.2)_
|
|
249
|
-
|
|
250
|
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## v1.7.1
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251
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-
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252
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_Same as v1.7.0. This is just due to a glitch at npmjs.org._
|
|
253
|
-
|
|
254
|
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## v1.7.0
|
|
255
|
-
|
|
256
|
-
- Add support for scrollable views. Activate via the option `scrollable: true`. Once you activate scrollable views all views are automatically zoomfixed! See [http://localhost:8080/others/scrollable-container.html](others/scrollable-container.html) for an example.
|
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257
|
-
- Add `option(key, value)` to the JS API for changing options. It supports getting all options when `value` is ommited and setting `scrollable`.
|
|
258
|
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- Properly display "Loading" while loading tileset info
|
|
259
|
-
- Add support to ignore offscreen values for value scale locking by setting `ignoreOffScreenValues: true` for a lock group in `locksDict`.
|
|
260
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-
|
|
261
|
-
_[Detailed changes since v1.6.12](https://github.com/higlass/higlass/compare/v1.6.12...v1.7.0)_
|
|
262
|
-
|
|
263
|
-
## v1.6.12
|
|
264
|
-
|
|
265
|
-
- Rename React lifecycle methods according to their recommendations
|
|
266
|
-
- Add support for borders (via the `stroke`, `strokeWidth`, `strokeOpacity`, and `strokePos` options) and outlines (via the `outline`, `outlineWidth`, `outlineOpacity`, and `outlinePos` options) to overlays. See [http://localhost:8080/apis/svg.html?/viewconfs/fancy-overlays.json](http://localhost:8080/apis/svg.html?/viewconfs/fancy-overlays.json) for an example.
|
|
267
|
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- Fixed horizontal rule bug (from Slack)
|
|
268
|
-
|
|
269
|
-
_[Detailed changes since v1.6.11](https://github.com/higlass/higlass/compare/v1.6.11...v1.6.12)_
|
|
270
|
-
|
|
271
|
-
## v1.6.11
|
|
272
|
-
|
|
273
|
-
- Overlay track bug fixes
|
|
274
|
-
- Added `minWidth` and `minHeight` options to `overlays` for better guidance
|
|
275
|
-
- Allow viewconf JSON to override minimum track height or width defaults, when a track specifies a `minHeight` or `minWidth` parameter
|
|
276
|
-
|
|
277
|
-
_[Detailed changes since v1.6.10](https://github.com/higlass/higlass/compare/v1.6.10...v1.6.11)_
|
|
278
|
-
|
|
279
|
-
## v1.6.10
|
|
280
|
-
|
|
281
|
-
- Add API call for show track chooser (`hgApi.showTrackChooser()`)
|
|
282
|
-
- Limit icon size in plot type chooser
|
|
283
|
-
- Add non-gzipped support to genbank-fetcher
|
|
284
|
-
- Better error handling for genbank fetcher
|
|
285
|
-
|
|
286
|
-
_[Detailed changes since v1.6.9](https://github.com/higlass/higlass/compare/v1.6.9...v1.6.10)_
|
|
287
|
-
|
|
288
|
-
## v1.6.9
|
|
289
|
-
|
|
290
|
-
- Enable brushing on bar, point, and 1d-heatmap tracks
|
|
291
|
-
|
|
292
|
-
_[Detailed changes since v1.6.8](https://github.com/higlass/higlass/compare/v1.6.8...v1.6.9)_
|
|
293
|
-
|
|
294
|
-
## v1.6.8
|
|
295
|
-
|
|
296
|
-
- Add infrastructure for value scale zooming
|
|
297
|
-
- Fixed the colors when dragging a track over a higlass display
|
|
298
|
-
- Added support for value scale zooming
|
|
299
|
-
- Added utils/track-utils to provide track functionality for use without inheritance
|
|
300
|
-
- Implemented a genbank data fetcher for gene annotation tracks
|
|
301
|
-
|
|
302
|
-
_[Detailed changes since v1.6.7](https://github.com/higlass/higlass/compare/v1.6.7...v1.6.8)_
|
|
303
|
-
|
|
304
|
-
## v1.6.7
|
|
305
|
-
|
|
306
|
-
- Fix #747: the tooltip value wasn't shown because of an issue related to minimizing the code
|
|
307
|
-
- Fix #743: the tooltip position now incorporates the scroll position
|
|
308
|
-
- Fix drag handle styling (typo)
|
|
309
|
-
- Make drag handle area (not the style) bigger so it's easier to grab
|
|
310
|
-
|
|
311
|
-
_[Detailed changes since v1.6.6](https://github.com/higlass/higlass/compare/v1.6.6...v1.6.7)_
|
|
312
|
-
|
|
313
|
-
## v1.6.6
|
|
314
|
-
|
|
315
|
-
- Fix #732: Remove the hold ALT feature as it's confusion and leads to a weird bug.
|
|
316
|
-
- Fix leaking dark mode setting
|
|
317
|
-
- Change option to activate dark theme from `isDarkTheme: true` to `theme: 'dark'`. Also, use `setTheme()` of the JsAPI instead of `setDarkTheme()` from now on.
|
|
318
|
-
- Copy the tile data before mutation to fix an issue when displaying the same tileset twice (once in the upper right and lower left triangle)
|
|
319
|
-
|
|
320
|
-
_[Detailed changes since v1.6.5](https://github.com/higlass/higlass/compare/v1.6.5...v1.6.6)_
|
|
321
|
-
|
|
322
|
-
## v1.6.5
|
|
323
|
-
|
|
324
|
-
- Fixed the replace track bug (where replacing a center track wouldn't do anything)
|
|
325
|
-
|
|
326
|
-
_[Detailed changes since v1.6.4](https://github.com/higlass/higlass/compare/v1.6.4...v1.6.5)_
|
|
327
|
-
|
|
328
|
-
## v1.6.4
|
|
329
|
-
|
|
330
|
-
- Truly fix #593: zoom to data extent when adding the first track to an empty view
|
|
331
|
-
|
|
332
|
-
_[Detailed changes since v1.6.3](https://github.com/higlass/higlass/compare/v1.6.3...v1.6.4)_
|
|
333
|
-
|
|
334
|
-
## v1.6.3
|
|
335
|
-
|
|
336
|
-
- Dynamically update dark theme when the options change
|
|
337
|
-
- Fix #722: added `labelShowResolution` as an option to allow hiding the `[Current data resolution...]` text
|
|
338
|
-
- Add support for missing values (`NaN`s) to the 1D heatmap track
|
|
339
|
-
- Use the new link format
|
|
340
|
-
|
|
341
|
-
_[Detailed changes since v1.6.2](https://github.com/higlass/higlass/compare/v1.6.2...v1.6.3)_
|
|
342
|
-
|
|
343
|
-
## v1.6.2
|
|
344
|
-
|
|
345
|
-
- Render `horizontal-heatmap` track properly in PIXI v4 and v5
|
|
346
|
-
- Expose pixi renderer to plugin tracks to allow them to render textures from graphics objects. (More here: https://github.com/pixijs/pixi.js/issues/5394)
|
|
347
|
-
|
|
348
|
-
_[Detailed changes since v1.6.1](https://github.com/higlass/higlass/compare/v1.6.1...v1.6.2)_
|
|
349
|
-
|
|
350
|
-
## v1.6.1
|
|
351
|
-
|
|
352
|
-
- Fix visual glitches with the new Modal when run in `higlass-app`
|
|
353
|
-
- Really fix #651: set correct namespace for SVG exports
|
|
354
|
-
- Treat `tilesetInfo.mirror_tiles = false` as a falsy value
|
|
355
|
-
- Fixed: `Save and Close` in the ViewConfigEditor works properly
|
|
356
|
-
|
|
357
|
-
_[Detailed changes since v1.6.0](https://github.com/higlass/higlass/compare/v1.6.0...v1.6.1)_
|
|
358
|
-
|
|
359
|
-
## v1.6.0
|
|
360
|
-
|
|
361
|
-
- Add an option to restrict the extent of central heatmaps to the upper-right or lower-left corner to enable comparison of two heatmaps in the center. Run `npm start` and see [http://localhost:8080/apis/svg.html?/viewconfs/diagonal-split-heatmap.json](http://localhost:8080/apis/svg.html?/viewconfs/diagonal-split-heatmap.json) for an example
|
|
362
|
-
- Updated `pixi.js` to version `5`. In your `html` files you need to replace the previous PixiJS loader with `<script crossorigin src="https://unpkg.com/pixi.js@5/dist/pixi.min.js"></script>` (or `<script crossorigin src="https://unpkg.com/pixi.js-legacy@5/dist/pixi-legacy.min.js"></script>` if you want to use the Canvas renderer)
|
|
363
|
-
- Add a dialog to directly edit the view config in the browser
|
|
364
|
-
- Replace ReactBootstrap modal with custom modal to not rely on Bootstrap and support Jupyter
|
|
365
|
-
- Updated `pub-sub-es` to version `1.2.1` to fix a bug in the shorthand event unsubscription
|
|
366
|
-
- Added an example of a map overlay
|
|
367
|
-
- Support semi-transparent colormaps through RGBA colors
|
|
368
|
-
- Update Mapbox endpoint. See [http://localhost:8080/others/mapbox.html](http://localhost:8080/others/mapbox.html) for an example.
|
|
369
|
-
- Improve performance of the `mousemove`-related event handling
|
|
370
|
-
- Remove unused properties from the exported view config
|
|
371
|
-
- Improve performance of tiles fetching through a combination of throttling and debouncing
|
|
372
|
-
- Fix a minor visual glitch with the positioning of track-related `div`s
|
|
373
|
-
- Fix OSM track to avoid CORS issues in Chrome and allow setting `minPos` to `0`
|
|
374
|
-
- Fix #648: Auto select and copy URL when exporting a view by link
|
|
375
|
-
- Fix #647: Shows correct URL when specifying an absolute URL as `exportViewUrl` in the viewconf
|
|
376
|
-
- Fix #651: set correct namespace for SVG exports
|
|
377
|
-
- Fix #593: zoom to data extent when adding the first track to an empty view
|
|
378
|
-
|
|
379
|
-
_[Detailed changes since v1.5.8](https://github.com/higlass/higlass/compare/v1.5.8...v1.6.0)_
|
|
380
|
-
|
|
381
|
-
## v1.5.8
|
|
382
|
-
|
|
383
|
-
- Fix a value scale syncing bug
|
|
384
|
-
- Update the docs
|
|
385
|
-
|
|
386
|
-
_[Detailed changes since v1.5.7](https://github.com/higlass/higlass/compare/v1.5.7...v1.5.8)_
|
|
387
|
-
|
|
388
|
-
## v1.5.7
|
|
389
|
-
|
|
390
|
-
- Fix #637 - SVG export fill color doesn't match what is selected
|
|
391
|
-
- Switch to nearest neighbor interpolation for horizontal heatmaps
|
|
392
|
-
|
|
393
|
-
_[Detailed changes since v1.5.8](https://github.com/higlass/higlass/compare/v1.5.6...v1.5.7)_
|
|
394
|
-
|
|
395
|
-
## v1.5.6
|
|
396
|
-
|
|
397
|
-
- Allow any horizontal track to also be placed on the left or right
|
|
398
|
-
|
|
399
|
-
_[Detailed changes since v1.5.8](https://github.com/higlass/higlass/compare/v1.5.6...v1.5.7)_
|
|
400
|
-
|
|
401
|
-
## v1.5.5
|
|
402
|
-
|
|
403
|
-
- Fixed #612: resolved an issue with caseinsensitive chromosome names
|
|
404
|
-
- Destroy heatmap sprites and axis texts to mitigate memory leak
|
|
405
|
-
|
|
406
|
-
_[Detailed changes since v1.5.4](https://github.com/higlass/higlass/compare/v1.5.4...v1.5.5)_
|
|
407
|
-
|
|
408
|
-
## v1.5.4
|
|
409
|
-
|
|
410
|
-
- Fix the multiple component passive event issue by replacing the dom-event.js handlers with a class so that each component maintains its own context
|
|
411
|
-
|
|
412
|
-
_[Detailed changes since v1.5.3](https://github.com/higlass/higlass/compare/v1.5.3...v1.5.4)_
|
|
413
|
-
|
|
414
|
-
## v1.5.3
|
|
415
|
-
|
|
416
|
-
- Let HorizontalLineTracks look up tileset_info.tile_size
|
|
417
|
-
and tileset_info.bins_per_dimension
|
|
418
|
-
- Specify default track types directly in `showAvailableTrackTypes` API
|
|
419
|
-
- Updated the docs deploy directory
|
|
420
|
-
- Updated the javascript API example to include a full working html page
|
|
421
|
-
- Use default height for new tracks rather than min height. Fixes
|
|
422
|
-
newly added gene annotations so that they show names without having
|
|
423
|
-
to be resized
|
|
424
|
-
- Fixed bug that was causing overlay tracks to not appear
|
|
425
|
-
- Fixed horizontal-vector-heatmap error thrown bug by padding incomplete
|
|
426
|
-
incoming data arrays
|
|
427
|
-
|
|
428
|
-
_[Detailed changes since v1.5.1](https://github.com/higlass/higlass/compare/v1.5.1...v1.5.3)_
|
|
429
|
-
|
|
430
|
-
## v1.5.1
|
|
431
|
-
|
|
432
|
-
- Fixed UI hanging on mouseover of zoomed out matrix bug
|
|
433
|
-
- Fixed #588: horizontal heatmap zoom limit bug
|
|
434
|
-
- Reset value scale locks when new viewconf is added
|
|
435
|
-
- Added a default track type for the chromsizes datatype
|
|
436
|
-
- Fixed drag handler pubSub reference
|
|
437
|
-
- Fixed #596: scrolling while zooming bug introduced in latest chrome
|
|
438
|
-
|
|
439
|
-
_[Detailed changes since v1.5.0](https://github.com/higlass/higlass/compare/v1.5.0...v1.5.1)_
|
|
440
|
-
|
|
441
|
-
## v1.5.0
|
|
442
|
-
|
|
443
|
-
- Allow sharing the mouse position globally. See [`docs/examples/others/global-mouse-position.html`](docs/examples/others/global-mouse-position.html) for an example.
|
|
444
|
-
- Allow disabling the change of views and tracks separately by setting `viewEditable: false` and `tracksEditable: false` in your view config.
|
|
445
|
-
- Added ability to define label margins. See [`docs/examples/viewconfs/label-margin.json`](docs/examples/viewconfs/label-margin.json) for an example.
|
|
446
|
-
- Make view spacing adjustable via initialization options. See [/docs/examples/others/adjust-view-spacing.html](/docs/examples/others/adjust-view-spacing.html) for an example.
|
|
447
|
-
- Add a new option to tracks that support axis: `axisMargin` to add some margin to an axis. See [docs/examples/viewconfs/axis-margin.json](docs/examples/viewconfs/axis-margin.json) for an example
|
|
448
|
-
- Add a new option to BarTrack for drawing a demarcation line at the bottom of the track, i.e., at the zero value. See [`/apis/svg.html?/viewconfs/bar-zero-line.json`](/apis/svg.html?/viewconfs/bar-zero-line.json) for an example.
|
|
449
|
-
- Fixed an issue with small offsets when exporting bar tracks to SVG
|
|
450
|
-
- Fixed an issue where bars in a `BarTrack` related to values higher than `valueScaleMax` were not drawn.
|
|
451
|
-
- Fixed an issue with `hgApi.setTrackValueScaleLimits`
|
|
452
|
-
- Fix #291: allow web page scrolling when zoomFixed is set to true
|
|
453
|
-
- Fix #578: BarTrack SVG export overplotting error.
|
|
454
|
-
- Fix #584: Reset viewport is broken
|
|
455
|
-
|
|
456
|
-
_[Detailed changes since v1.4.2](https://github.com/higlass/higlass/compare/v1.4.2...v1.5.0)_
|
|
457
|
-
|
|
458
|
-
## v1.4.2
|
|
459
|
-
|
|
460
|
-
- Fix #568, #569
|
|
461
|
-
|
|
462
|
-
## v1.4.1
|
|
463
|
-
|
|
464
|
-
- Allow users to choose adding the chromosome grid overlay from the Add Track Dialog when selecting a cooler file.
|
|
465
|
-
- Expose version from hglib. E.g., `window.hglib.version`
|
|
466
|
-
|
|
467
|
-
## v1.4.0
|
|
468
|
-
|
|
469
|
-
- Add `constIndicators` as an option to 1D tracks for displaying a visual indicator (e.g., a line) at a constant value.
|
|
470
|
-
- Added `[glyph-color]` as the default option for line and bar tracks
|
|
471
|
-
- Add new public event `cursorLocation`. See [`docs/examples/apis/cursor-location.html`](docs/examples/apis/cursor-location.html) for an example.
|
|
472
|
-
- Extend `mouseMoveZoom` event to support 1D data tracks.
|
|
473
|
-
- Expose D3 libraries to plugin tracks
|
|
474
|
-
- Overlay tracks now properly allow for extent to include multiple ranges.
|
|
475
|
-
- Overlay tracks can now optionally have extent ranges configured as a 4-tuple, separating x ranges from y ranges
|
|
476
|
-
|
|
477
|
-
## v1.3.1
|
|
478
|
-
|
|
479
|
-
- Clear mouse position indicator when leaving the root dom element, on blurring the window, and when no track is hovered
|
|
480
|
-
|
|
481
|
-
## v1.3.0
|
|
482
|
-
|
|
483
|
-
- Changed `defaultOptions` to `defaultTrackOptions` in the hglib.viewer options.
|
|
484
|
-
- Added `TiledPixiTrack.on` event handler to listen to data changes
|
|
485
|
-
- Added several API endpoints: `getComponent()`, `setAuthHeader()`, `getAuthHeader()`,
|
|
486
|
-
- Added export of several utility functions: `waitForJsonComplete()`, `waitForTilesLoaded()`, `waitForTransitionsFinished()`, `mountHGComponent()`, `getTrackObjectFromHGC()`
|
|
487
|
-
- Added the ability to specify default track options through the API
|
|
488
|
-
- Added nesting to the tileset finder so that tilesets can be grouped together into categories
|
|
489
|
-
- Added the `axisLabelFormatting` option to 1d quantitative tracks
|
|
490
|
-
- Added TiledPixiTrack.on event handler
|
|
491
|
-
- Added getTrackObject to exports
|
|
492
|
-
- Added support for overlay tracks
|
|
493
|
-
- Minor bug fix wherein valueScaleMin and valueScaleMax weren't used when set to 0
|
|
494
|
-
- Added support for click event handling of 1D and 2D annotations from `1d-annotation` and `chromosome-2d-annotations` tracks
|
|
495
|
-
- Cloned views split vertically first (#259)
|
|
496
|
-
- Change component height when a new viewconf is passed in
|
|
497
|
-
- Add a fudge factor to ensure that the entire view is shown in the grid layout
|
|
498
|
-
- Refactored the pub-sub service to avoid implicit global event listening
|
|
499
|
-
- Fix a minor visual glitch in the gene annotation track
|
|
500
|
-
- Expose `mix()` from `mixwith` to plugin tracks
|
|
501
|
-
- Support different aggregation modes (mean, min, max, std) for bigWig files
|
|
502
|
-
- Changed `defaultOptions` to `defaultTrackOptions` in the hglib.viewer options.
|
|
503
|
-
- Clear mouse position indicator when leaving the root dom element, on blurring the window, and when no track is hovered
|
|
504
|
-
- Fix several issue with SVG export
|
|
505
|
-
- Minor bug fix wherein valueScaleMin and valueScaleMax weren't used when set to 0
|
|
506
|
-
- Fix #401
|
|
507
|
-
- Fix #395
|
|
508
|
-
- Fix #360
|
|
509
|
-
- Support different aggregation modes (mean, min, max, std) for bigWig files
|
|
510
|
-
|
|
511
|
-
## v1.2.8
|
|
512
|
-
|
|
513
|
-
- Added `editable` as a possible option to hglib.viewer()
|
|
514
|
-
- Enabled arbitrary tile resolution in HeatmapTiledPixiTrack. It just needs to receive `bins_per_dimension` in the tileset info. Otherwise it defaults to 256.
|
|
515
|
-
|
|
516
|
-
## v1.2.6
|
|
517
|
-
|
|
518
|
-
- Fixed trackSourceServer export
|
|
519
|
-
- Fixed BedLikeTrack errors being thrown
|
|
520
|
-
|
|
521
|
-
## v1.2.5
|
|
522
|
-
|
|
523
|
-
- Fix remote viewConf loading in HiGlassComponent
|
|
524
|
-
|
|
525
|
-
## v1.2.4
|
|
526
|
-
|
|
527
|
-
- Fix #322
|
|
528
|
-
- Fix missing update of the value scale upon rerendering
|
|
529
|
-
- Fix absToChr and chrToAbs of the ChromInfo API
|
|
530
|
-
- Fixed a nasty rendering bug in the chrom labels track
|
|
531
|
-
|
|
532
|
-
## v1.2.3
|
|
533
|
-
|
|
534
|
-
- Fixed line inversion issue (#268)
|
|
535
|
-
- Fixed fetched area size mismatch issue on mouseover
|
|
536
|
-
- Added mouseover text to UI elements
|
|
537
|
-
- Upgraded to webpack 4
|
|
538
|
-
- Started building hglib.js and hglib.min.js
|
|
539
|
-
- Support for searching for gene names with dashes
|
|
540
|
-
- Sort tilesets alphabetically (#256)
|
|
541
|
-
- Fixed zoom linking issues (#251, #76)
|
|
542
|
-
|
|
543
|
-
## v1.2.1 and v1.2.2
|
|
544
|
-
|
|
545
|
-
- Accidental releases. Please ignore.
|
|
546
|
-
|
|
547
|
-
## v1.2.0
|
|
548
|
-
|
|
549
|
-
- Add 1D heatmap track (#303): Alternative visual representation of 1D bigwig tracks. See https://github.com/higlass/higlass/pull/303 and https://github.com/higlass/higlass/blob/develop/docs/examples/1d-heatmap-track.html for an example.
|
|
550
|
-
|
|
551
|
-

|
|
552
|
-
|
|
553
|
-
- Add fixing y-scale of 1D data tracks (#297). See https://github.com/higlass/higlass/pull/297 and https://github.com/higlass/higlass/blob/develop/docs/examples/api-set-track-value-scale-limits.html for an example.
|
|
554
|
-
- Add JS-API for resetting the viewport back to the initial x and y domains in the viewconfig (#289)
|
|
555
|
-
- Add JS-API for adjusting the margin of the HiGlass instance (#286). See https://github.com/higlass/higlass/pull/286 for an example.
|
|
556
|
-
- Add JS-API for getting the min and max value of a track (#298). See https://github.com/higlass/higlass/blob/develop/docs/examples/api-get-min-max-value.html for an example.
|
|
557
|
-
- Enhance bed track (#278): support value encoding as the `y` offset or `color`. See https://github.com/higlass/higlass/pull/278 for an example.
|
|
558
|
-
- Enhance gene annotation track (#314): See https://github.com/higlass/higlass/pull/314 and https://github.com/higlass/higlass/blob/develop/docs/examples/gene-annotations.html for an example.
|
|
559
|
-
|
|
560
|
-

|
|
561
|
-
|
|
562
|
-
- Enhance chrom label track (#305): add support for adjusting the font size, font alignment, and font outline to use space more economically. See https://github.com/higlass/higlass/pull/305 and https://github.com/higlass/higlass/blob/develop/docs/examples/chromosome-labels.html for an example.
|
|
563
|
-
|
|
564
|
-

|
|
565
|
-
|
|
566
|
-
- Enhance bar track (#304): add color and gradient encoding plus diverging tracks. See https://github.com/higlass/higlass/pull/304 and https://github.com/higlass/higlass/blob/develop/docs/examples/bar-track-color-range.html for an example.
|
|
567
|
-
|
|
568
|
-

|
|
569
|
-
|
|
570
|
-
- Expose `absToChr` and `chrToAbs` API on `ChromInfo` (#283 and #307)
|
|
571
|
-
- Upgrade to React `v16.5`
|
|
572
|
-
- Removed numjs (#320)
|
|
573
|
-
- Update tool tip appearance (#309)
|
|
574
|
-
- Make resize handle fade out and in upon mouse enter of a draggable div
|
|
575
|
-
- Enlarge resize handle upon mouse enter
|
|
576
|
-
- Remove all tracks from the 'whole' window when clearing the view
|
|
577
|
-
- Fix viewport projection issue when there are vertical and horizontal rules
|
|
578
|
-
- Fix colorbar positioning bug
|
|
579
|
-
- Fix #317 (moving gene positions)
|
|
580
|
-
- Fix #263
|
|
581
|
-
- Fix #245: track type selection bug
|
|
582
|
-
- Fix #262: zoom to data extent issue
|
|
583
|
-
|
|
584
|
-
## v1.1.5
|
|
585
|
-
|
|
586
|
-
- Merge'd Chuck's PR for adding 'same-origin' to fetch request headers
|
|
587
|
-
- Fixed a bug where a view without a layout is created with a width of 1
|
|
588
|
-
|
|
589
|
-
## v1.1.4
|
|
590
|
-
|
|
591
|
-
- Fix the checkAllTilesetInfoReceived function so that it ignores left and top
|
|
592
|
-
axis tracks
|
|
593
|
-
- First release to be registered with Zenodo
|
|
594
|
-
|
|
595
|
-
## v1.1.3
|
|
596
|
-
|
|
597
|
-
- Add z-index to mouseover div so that it's not hidden behind other elements
|
|
598
|
-
|
|
599
|
-
## v1.1.2
|
|
600
|
-
|
|
601
|
-
- Inline the SVG styles so they aren't overwritten by other elments on the
|
|
602
|
-
page
|
|
603
|
-
- Inline TrackControl svg styles so they aren't overwritten by page css
|
|
604
|
-
settings
|
|
605
|
-
- Clear gene annotation graphics before redrawing
|
|
606
|
-
|
|
607
|
-
## v1.1.1
|
|
608
|
-
|
|
609
|
-
- Fixed export track data bug in heatmaps that are not combined tracks
|
|
610
|
-
|
|
611
|
-
## v1.1.0
|
|
612
|
-
|
|
613
|
-
- Check whether the tileset_info specifies that the tiles should be mirrored
|
|
614
|
-
- Added data export feature
|
|
615
|
-
- Added showMousePosition and showMouseTooltip to horizontal-bar-track
|
|
616
|
-
|
|
617
|
-
## v1.0.4
|
|
618
|
-
|
|
619
|
-
- Zoom through the viewport projection
|
|
620
|
-
|
|
621
|
-
## v1.0.3
|
|
622
|
-
|
|
623
|
-
- Fixed cross rule bug
|
|
624
|
-
|
|
625
|
-
## v1.0.2
|
|
626
|
-
|
|
627
|
-
- Added vertical divergent bar tracks
|
|
628
|
-
- Fixed export in SVG
|
|
629
|
-
- Fix mouseover error when trackrenderer hasn't been initialized yet
|
|
630
|
-
- Added zoomFixed option to the top level of the viewconf
|
|
631
|
-
- Use transpiled version of `mixwith.js`
|
|
632
|
-
- Add options to change the background of the label and colorbar
|
|
633
|
-
|
|
634
|
-
## v1.0.1 (2018-06-14)
|
|
635
|
-
|
|
636
|
-
- Fixed background export in SVG
|
|
637
|
-
- Turned off line mouseover by default
|
|
638
|
-
|
|
639
|
-
## v1.0.0-alpha.12
|
|
640
|
-
|
|
641
|
-
- Fixed long loading bug on zoomed in genes
|
|
642
|
-
|
|
643
|
-
## v1.0.0-alpha.11
|
|
644
|
-
|
|
645
|
-
- Fixed gene stretching issues
|
|
646
|
-
|
|
647
|
-
## v1.0.0-alpha.10
|
|
648
|
-
|
|
649
|
-
- Fixed background rendering after resizing
|
|
650
|
-
- Fixed viewconf export link (use state.viewconf vs props.viewconf)
|
|
651
|
-
|
|
652
|
-
## v1.0.0-alpha.9
|
|
653
|
-
|
|
654
|
-
- Fixed lock value scales
|
|
655
|
-
|
|
656
|
-
## v1.0.0-alpha.8
|
|
657
|
-
|
|
658
|
-
- Fixed tooltip scrollbar appearance
|
|
659
|
-
- Fixed context menu appearing issue
|
|
660
|
-
|
|
661
|
-
## v1.0.0-alpha.7
|
|
662
|
-
|
|
663
|
-
- Fixed scrolling bug when multiple higlass components are on a single page
|
|
664
|
-
- Fixed hover bug in combined tracks
|
|
665
|
-
|
|
666
|
-
## v1.0.0-alpha
|
|
667
|
-
|
|
668
|
-
- Added triangles to genes
|
|
669
|
-
- Preliminary authentication support
|
|
670
|
-
- Added track for displaying gigapixel images
|
|
671
|
-
- Added GeoJSON track and updated OSM track
|
|
672
|
-
- Added mouseMoveZoom event to public API
|
|
673
|
-
- Fixed and extended pubSub module
|
|
674
|
-
- Added flexible per-track crosshair
|
|
675
|
-
- Fixed and robustified range selection API
|
|
676
|
-
- Display error message on error
|
|
677
|
-
- Don't error when displaying menus when invalid track type is
|
|
678
|
-
entered
|
|
679
|
-
- Added an endpoint for sharing view configs as a link (`shareViewConfigAsLink()`) and exporting them as png and svg (`get('png' || 'svg')`)
|
|
680
|
-
- Simplified `hglib` API
|
|
681
|
-
- Updated third-party libs to get rid of deprecation warnings for React v16
|
|
682
|
-
- Fixed small bug in placing rules
|
|
683
|
-
- Display error when failing to retrieve tilesetInfo
|
|
684
|
-
|
|
685
|
-
* Added support for cross-section tracks
|
|
686
|
-
|
|
687
|
-
- Rendering improvements
|
|
688
|
-
|
|
689
|
-
## v0.10.22 (2018-02-22)
|
|
690
|
-
|
|
691
|
-
- Added options to change the fill color of bedlike tracks
|
|
692
|
-
|
|
693
|
-
## v0.10.21 (2018-02-21)
|
|
694
|
-
|
|
695
|
-
- Exposed the ChromosomeInfo structure as part of the hglib API
|
|
696
|
-
|
|
697
|
-
## v0.10.20 (2018-02-??
|
|
698
|
-
|
|
699
|
-
- Rendering improvements
|
|
700
|
-
|
|
701
|
-
## v0.10.20 (2018-02-20)
|
|
702
|
-
|
|
703
|
-
- Fixed api variable in HiGlassComponent
|
|
704
|
-
- Fixed relToAbsChromPos so that it converts locations to numbers before
|
|
705
|
-
adding
|
|
706
|
-
- Added strokeWidth as an option to the viewport projection track
|
|
707
|
-
|
|
708
|
-
## v0.10.19 (2018-02-11)
|
|
709
|
-
|
|
710
|
-
- Fixed the 2D chromosome labels track
|
|
711
|
-
|
|
712
|
-
## v0.10.18 (2018-02-11)
|
|
713
|
-
|
|
714
|
-
- Fixed Horizontal2DTilesTrack
|
|
715
|
-
|
|
716
|
-
## v0.10.16 (2018-
|
|
717
|
-
|
|
718
|
-
- Don't show the "Strange tileData" warnings
|
|
719
|
-
- Pegged bootstrap to version 3.3.7
|
|
720
|
-
|
|
721
|
-
## v0.10.16 (2018-02-01)
|
|
722
|
-
|
|
723
|
-
- Fixed a bug during active range selection when the _select_ mouse tool is deactivated
|
|
724
|
-
|
|
725
|
-
## v0.10.15 (2018-01-30)
|
|
726
|
-
|
|
727
|
-
- Added the vertical bed-like track
|
|
728
|
-
|
|
729
|
-
## v0.10.13 (2018-01-25)
|
|
730
|
-
|
|
731
|
-
- Added the multivec track
|
|
732
|
-
|
|
733
|
-
## v0.10.12 (2018-01-21)
|
|
734
|
-
|
|
735
|
-
- Fixed pseudocounts in linear-scaled heatmaps
|
|
736
|
-
|
|
737
|
-
## v0.10.12 (2018-01-20)
|
|
738
|
-
|
|
739
|
-
- Fixed get scale bug
|
|
740
|
-
|
|
741
|
-
## v0.10.11 (2018-01-17)
|
|
742
|
-
|
|
743
|
-
- Fixed non-draggable views bug
|
|
744
|
-
|
|
745
|
-
## v0.10.10 (2018-01-17)
|
|
746
|
-
|
|
747
|
-
- Default to log scaling if there are negative values
|
|
748
|
-
- Fixed the custom colormap
|
|
749
|
-
- Fix the gene annotations color changing
|
|
750
|
-
- Fixed two regressions regarding the viewport projections
|
|
751
|
-
|
|
752
|
-
## v0.10.9 (2018-01-13)
|
|
753
|
-
|
|
754
|
-
- Skipping a version because the latest version wasn't specified in
|
|
755
|
-
package.json
|
|
756
|
-
|
|
757
|
-
## v0.10.8
|
|
758
|
-
|
|
759
|
-
- Skipping a version because the latest version wasn't specified in
|
|
760
|
-
package.json
|
|
761
|
-
|
|
762
|
-
## v0.10.7 (2018-01-13)
|
|
763
|
-
|
|
764
|
-
- Show current data resolution in tiled sets containing raw resolutions rather
|
|
765
|
-
than zoom levels
|
|
766
|
-
|
|
767
|
-
## v0.10.6 (2017-12-28)
|
|
768
|
-
|
|
769
|
-
- Load ResizeSensors after the element is attached to the DOM tree
|
|
770
|
-
- Added DivergentBarTrack
|
|
771
|
-
- Fixed submenu hiding bug
|
|
772
|
-
|
|
773
|
-
## v0.10.5 (2017-12-27)
|
|
774
|
-
|
|
775
|
-
- Fixed bug in TrackRenderer.setUpInitialScales where updating the view with
|
|
776
|
-
new equivalent initial domains and different dimensions led to the view being
|
|
777
|
-
misplaced
|
|
778
|
-
- Added z-index to popup menus
|
|
779
|
-
|
|
780
|
-
## v0.10.4 (2017-12-16)
|
|
781
|
-
|
|
782
|
-
- Fixed a bug in zoomToData
|
|
783
|
-
- New API call for setViewConfig
|
|
784
|
-
- New API call for zoomToDataExtent
|
|
785
|
-
|
|
786
|
-
## v0.10.3 (2017-12-13)
|
|
787
|
-
|
|
788
|
-
- Don't include a colon if the port is 80
|
|
789
|
-
- Added an option to clear the view
|
|
790
|
-
- Exclude NaN values when setting the valueScale
|
|
791
|
-
- Fixed bug related to displaying empty matrix tiles
|
|
792
|
-
|
|
793
|
-
## v0.10.2 (2017-12-12)
|
|
794
|
-
|
|
795
|
-
- Fixed a bug in loading tileset info that isn't there
|
|
796
|
-
- Better error handling on internal server error
|
|
797
|
-
- Removed functionless menu item
|
|
798
|
-
|
|
799
|
-
## v0.10.1 (2017-12-05)
|
|
800
|
-
|
|
801
|
-
- Fixed bug in Bedlike tracks that don't have a header
|
|
802
|
-
|
|
803
|
-
## v0.10.0 (2017-12-05)
|
|
804
|
-
|
|
805
|
-
- Change track type from the config menu
|
|
806
|
-
- Initial framework for divided by tracks
|
|
807
|
-
- Y-positioned bed-like tracks
|
|
808
|
-
|
|
809
|
-
## v0.9.16 (2017-
|
|
810
|
-
|
|
811
|
-
- Fixed undefined error when toggling genome position search box
|
|
812
|
-
|
|
813
|
-
## v0.9.15 (2017-11-22)
|
|
814
|
-
|
|
815
|
-
- Fixed bug where newly selected annotations weren't being used
|
|
816
|
-
- Added the hideHeader option
|
|
817
|
-
- Added a warning for malformed gene annotations
|
|
818
|
-
- Free up webgl renderer resources when unmount
|
|
819
|
-
- Minor CSS cleanup
|
|
820
|
-
- Fix resizing bug that appears after closing a view
|
|
821
|
-
- Warn if there are no track source servers specified in the viewconf
|
|
822
|
-
|
|
823
|
-
## v0.9.14 (2017-11-11)
|
|
824
|
-
|
|
825
|
-
- Show labels on bar chart
|
|
826
|
-
|
|
827
|
-
## v0.9.13 (2017-11-09)
|
|
828
|
-
|
|
829
|
-
- Fixed gene position searching regression
|
|
830
|
-
|
|
831
|
-
## v0.9.12 (2017-11-08)
|
|
832
|
-
|
|
833
|
-
- Fix inter-chromosomal searches (chr1-chr2)
|
|
834
|
-
|
|
835
|
-
## v0.9.11 (2017-11-08)
|
|
836
|
-
|
|
837
|
-
- Fix gene annotation coloring bug
|
|
838
|
-
- Fix menu clash error that occurs when a center track is specified
|
|
839
|
-
without a combined track
|
|
840
|
-
- Zoom into entire chromosomes by just entering its name
|
|
841
|
-
|
|
842
|
-
## v0.9.10 (2017-11-01)
|
|
843
|
-
|
|
844
|
-
- Fixed d3 brush Error: <rect> attribute height: Expected length, "Infinity"
|
|
845
|
-
- Fixed scale initialization error
|
|
846
|
-
- Added back heatmap value scaling
|
|
847
|
-
- Fixed horizontal heatmap multires tile loading
|
|
848
|
-
- Better point export
|
|
849
|
-
|
|
850
|
-
## v0.9.9 (2017-11-01)
|
|
851
|
-
|
|
852
|
-
- Fix SVG bar chart export
|
|
853
|
-
- Fixed network error on SVG export again (from v0.8.44)
|
|
854
|
-
|
|
855
|
-
## v0.9.8 (2017-10-31)
|
|
856
|
-
|
|
857
|
-
- Switch back to minified build
|
|
858
|
-
|
|
859
|
-
## v0.9.7 (2017-10-31)
|
|
860
|
-
|
|
861
|
-
- Initialize scales when viewconfig is loaded rather than on
|
|
862
|
-
handleScalesChanged
|
|
863
|
-
|
|
864
|
-
## v0.9.6 (2017-10-31)
|
|
865
|
-
|
|
866
|
-
- Faulty build (package.json wasn't there)
|
|
867
|
-
|
|
868
|
-
## v0.9.5 (2017-10-31)
|
|
869
|
-
|
|
870
|
-
- Fix visual clash of the center track's context menu and the colormap
|
|
871
|
-
- Make visualization of 2D annotations more flexible: stroke width and fill / stroke opacity can be changed
|
|
872
|
-
- Create debug output files
|
|
873
|
-
|
|
874
|
-
## v0.9.4 (2017-10-26)
|
|
875
|
-
|
|
876
|
-
- Reintroduced value scale serialization fix
|
|
877
|
-
- Fixed HorizontalHeatmapExport
|
|
878
|
-
- Added a minimum width to 2D annotations
|
|
879
|
-
- Added SVG export for 2d-rectangle-domains track
|
|
880
|
-
|
|
881
|
-
## v0.9.3 (2017-10-23)
|
|
882
|
-
|
|
883
|
-
- Removed console log statement
|
|
884
|
-
|
|
885
|
-
## v0.9.2 (2017-10-23)
|
|
886
|
-
|
|
887
|
-
- Fixed the build script to copy hglib.css rather than style.css
|
|
888
|
-
|
|
889
|
-
## v0.9.1 (2017-10-23)
|
|
890
|
-
|
|
891
|
-
- Add support for vertical bar tracks
|
|
892
|
-
- Fixed .travis.yml release issue
|
|
893
|
-
|
|
894
|
-
## v0.9.0 (2017-10-21)
|
|
895
|
-
|
|
896
|
-
- Add 1D and 2D range selection
|
|
897
|
-
- Add support for SASS
|
|
898
|
-
- Add support for CSS Modules
|
|
899
|
-
- Update visuals of the context menu and view header
|
|
900
|
-
- Integrate search bar into view header
|
|
901
|
-
- Add ESLint and adhere to consistent code style
|
|
902
|
-
- (Fix #135) - Colorbar moves with the track when it's being resized
|
|
903
|
-
- (Fix #126) - Gene annotations shouldn't overlap on vertical tracks anymore
|
|
904
|
-
- Keep track controls visible if config menu is active
|
|
905
|
-
- Show child menus above the parent if there isn't enough space on the bottom
|
|
906
|
-
- Add port number when exporting viewconfs from a non-standard port
|
|
907
|
-
- Support arbitrary resolutions in heatmaps
|
|
908
|
-
|
|
909
|
-
## v0.8.44
|
|
910
|
-
|
|
911
|
-
- Redraw TiledPixiTracks after the tileset info has been received
|
|
912
|
-
- Remove value scale locks on handleCloseTrack
|
|
913
|
-
- Check that tiledPlot is defined in createSVG to fix the export
|
|
914
|
-
failing when there's two side-by-side by views created after closing
|
|
915
|
-
one
|
|
916
|
-
- Fixed the "Failed: network error" issue in chrome by changing the
|
|
917
|
-
"download" function in utils.js
|
|
918
|
-
|
|
919
|
-
## v0.8.43
|
|
920
|
-
|
|
921
|
-
- More fixes for SVG output for bedlike tracks
|
|
922
|
-
|
|
923
|
-
## v0.8.42
|
|
924
|
-
|
|
925
|
-
- Fixed SVG output for bedlike tracks
|
|
926
|
-
|
|
927
|
-
## v0.8.41
|
|
928
|
-
|
|
929
|
-
- Fixed chromosome grid color bug
|
|
930
|
-
- Fixed chromosome grid loading with many values bug
|
|
931
|
-
|
|
932
|
-
## v0.8.40
|
|
933
|
-
|
|
934
|
-
- Fixed value scale locking bug
|
|
935
|
-
|
|
936
|
-
## v0.8.37
|
|
937
|
-
|
|
938
|
-
- Fixed center track label background oddness (#144)
|
|
939
|
-
|
|
940
|
-
## v0.8.36
|
|
941
|
-
|
|
942
|
-
- (fix #146) Fixed value scale locking serialization bug
|
|
943
|
-
- Fixed gene annotation SVG export
|
|
944
|
-
- Fixed chromosome ticks SVG export
|
|
945
|
-
|
|
946
|
-
## v0.8.35
|
|
947
|
-
|
|
948
|
-
- Fixed colorbar hiding bug (Issue #131)
|
|
949
|
-
|
|
950
|
-
## v0.8.34
|
|
951
|
-
|
|
952
|
-
- Fixed horizontal heatmap loading after the adjustable color scale changes
|
|
953
|
-
- Fixed vertical heatmap loading
|
|
954
|
-
- Fixed vertical heatmap colorscale brush in LeftTrackModifier
|
|
955
|
-
|
|
956
|
-
## v0.8.33
|
|
957
|
-
|
|
958
|
-
- Removed the outside colorbar labels option (it's a little
|
|
959
|
-
ambiguous on the right side since the labels will be adjacent
|
|
960
|
-
to the other axis elements.
|
|
961
|
-
|
|
962
|
-
## v0.8.32
|
|
963
|
-
|
|
964
|
-
- Removed tests from package.json so that build completes (tests fail on
|
|
965
|
-
travis for some reason)
|
|
966
|
-
|
|
967
|
-
## v0.8.31
|
|
968
|
-
|
|
969
|
-
- Add a color limit selection to the Heatmap track in HiGlass
|
|
970
|
-
|
|
971
|
-
## v0.8.30
|
|
972
|
-
|
|
973
|
-
- Cherry picked the BedLikeTrack from the circle branch
|
|
974
|
-
|
|
975
|
-
## v0.8.28
|
|
976
|
-
|
|
977
|
-
- Fixed dependencies (peer and normal)
|
|
978
|
-
- Fixed other minor issues with `package.json`
|
|
979
|
-
|
|
980
|
-
## v0.8.27
|
|
981
|
-
|
|
982
|
-
- Fixed bug wher the "Loading" sign remained with 1D point tracks
|
|
983
|
-
|
|
984
|
-
## v0.8.26
|
|
985
|
-
|
|
986
|
-
- Different mapbox style options
|
|
987
|
-
|
|
988
|
-
## v0.8.25
|
|
989
|
-
|
|
990
|
-
- Hidden OSM tiles
|
|
991
|
-
- Customizeable osm width
|
|
992
|
-
|
|
993
|
-
## v0.8.24
|
|
994
|
-
|
|
995
|
-
- Major performance improvements for Gene annotations and horizontal points
|
|
996
|
-
- Fixed bug in searching for genome positions with a space at one of the ends
|
|
997
|
-
- Added the OSM tiles
|
|
998
|
-
|
|
999
|
-
## v0.8.23
|
|
1000
|
-
|
|
1001
|
-
- Don't show chromosome sizes as a separate track
|
|
1002
|
-
|
|
1003
|
-
## v0.8.22 - 2017-07-13
|
|
1004
|
-
|
|
1005
|
-
- Safari add track bug fix
|
|
1006
|
-
- Backwards compatibility on selectable chromosome axis tracks
|
|
1007
|
-
|
|
1008
|
-
## v0.8.21 - 2017-07-10
|
|
1009
|
-
|
|
1010
|
-
- Fixed the default transformation for horizontal tracks
|
|
1011
|
-
|
|
1012
|
-
## v0.8.20 - 2017-07-10
|
|
1013
|
-
|
|
1014
|
-
- Fix label display
|
|
1015
|
-
|
|
1016
|
-
## v0.8.19 - 2017-07-10
|
|
1017
|
-
|
|
1018
|
-
- Added the ability to select different transformations
|
|
1019
|
-
|
|
1020
|
-
## v0.8.18 - 2017-06-29
|
|
1021
|
-
|
|
1022
|
-
- Fixed custom colormap picker
|
|
1023
|
-
- Fixed overlayed track addition on double click
|
|
1024
|
-
|
|
1025
|
-
## v0.8.17 - 2017-06-28
|
|
1026
|
-
|
|
1027
|
-
- Performance improvements
|
|
1028
|
-
|
|
1029
|
-
## v0.8.16 - 2017-06-27
|
|
1030
|
-
|
|
1031
|
-
- Fixed a regression where closing views didn't remove the associated PIXI
|
|
1032
|
-
Components
|
|
1033
|
-
- Increased the drag timeout time to 5 seconds
|
|
1034
|
-
|
|
1035
|
-
## v0.8.15 - 2017-06-26
|
|
1036
|
-
|
|
1037
|
-
- Lowered the maximum number of tiles retrieved at once to 20
|
|
1038
|
-
|
|
1039
|
-
## v0.8.14 - 2017-06-26
|
|
1040
|
-
|
|
1041
|
-
- Increase the maximum number of tiles retrieved at once to 40
|
|
1042
|
-
|
|
1043
|
-
## v0.8.13 - 2017-06-26
|
|
1044
|
-
|
|
1045
|
-
- Option to draw borders around tracks
|
|
1046
|
-
- Option to change the stroke, fill colors and opacity of the
|
|
1047
|
-
horizontal-2d-rectangle-domains track
|
|
1048
|
-
|
|
1049
|
-
## v0.8.12 - 2017-06-26
|
|
1050
|
-
|
|
1051
|
-
- Hide overflow track handles
|
|
1052
|
-
|
|
1053
|
-
## v0.8.11 - 2017-06-26
|
|
1054
|
-
|
|
1055
|
-
- Fixed double click track addition bug
|
|
1056
|
-
- Mask view boundaries so that when the tracks are too large
|
|
1057
|
-
to fit inside, they don't overflow outside of their view
|
|
1058
|
-
- Added favicon
|
|
1059
|
-
|
|
1060
|
-
## v0.8.10 - 2017-06-25
|
|
1061
|
-
|
|
1062
|
-
- Multiple tileset selection
|
|
1063
|
-
- Disabled zooming on scrolling fix
|
|
1064
|
-
|
|
1065
|
-
## v0.8.9
|
|
1066
|
-
|
|
1067
|
-
- Make sure that the zoomable div matches the size of the container
|
|
1068
|
-
|
|
1069
|
-
## v0.8.8 - 2017-06-20
|
|
1070
|
-
|
|
1071
|
-
- Don't start zooming when scrolling into a HGC
|
|
1072
|
-
|
|
1073
|
-
## v0.8.7 - 2017-06-18
|
|
1074
|
-
|
|
1075
|
-
- Decreased the maximum colorbar height
|
|
1076
|
-
- Made the draggable div handles more transparent
|
|
1077
|
-
- Lowered the minimum height for chromosome axes
|
|
1078
|
-
|
|
1079
|
-
## v0.8.6 - 2017-06-18
|
|
1080
|
-
|
|
1081
|
-
- Fixed a bug where the HG Component would automatically and indefinitely
|
|
1082
|
-
increase in size
|
|
1083
|
-
|
|
1084
|
-
## v0.8.5 - 2017-06-16
|
|
1085
|
-
|
|
1086
|
-
- Fixed view linking bug (regression)
|
|
1087
|
-
- Added horizontal and vertical 2D domains tracks
|
|
1088
|
-
|
|
1089
|
-
## v0.8.4 - 2017-06-12
|
|
1090
|
-
|
|
1091
|
-
- Include a limit in the tilesets query so that all results are returned
|
|
1092
|
-
|
|
1093
|
-
## v0.8.3 - 2017-06-06
|
|
1094
|
-
|
|
1095
|
-
- Fixed a regression where adding new tracks doesn't work
|
|
1096
|
-
|
|
1097
|
-
## v0.8.2 - 2017-06-01
|
|
1098
|
-
|
|
1099
|
-
- Move hglib.css to dist/styles rather than dist/
|
|
1100
|
-
|
|
1101
|
-
## v0.8.1 - 2017-06-01
|
|
1102
|
-
|
|
1103
|
-
- Changed package.json to create hglib.css rather than style.css
|
|
1104
|
-
|
|
1105
|
-
## v0.8.0 - 2017-06-01
|
|
1106
|
-
|
|
1107
|
-
- Switched to webpack 2
|
|
1108
|
-
- Various warning fixes in the code
|
|
1109
|
-
- Pull chromsizes from the tilesets table instead
|
|
1110
|
-
- Remove the chroms table and app
|
|
1111
|
-
|
|
1112
|
-
## v0.7.3 - 2017-05-23
|
|
1113
|
-
|
|
1114
|
-
- Added stroke width as a property of line tracks
|
|
1115
|
-
- Fixed view layout bug caused by the "i" member of the layout not
|
|
1116
|
-
matching the view's uid
|
|
1117
|
-
- Fixed resizing so that vertical changes get handled immediately
|
|
1118
|
-
|
|
1119
|
-
## v0.7.2
|
|
1120
|
-
|
|
1121
|
-
- Added purple and turquoise colors
|
|
1122
|
-
- Added an option to control the label opacity
|
|
1123
|
-
|
|
1124
|
-
## v0.7.1
|
|
1125
|
-
|
|
1126
|
-
- Added horizontal and vertical track viewport projections
|
|
1127
|
-
- Bug fix where assembly name gets removed from track label
|
|
1128
|
-
|
|
1129
|
-
## v0.7.0
|
|
1130
|
-
|
|
1131
|
-
- Added an assembly selector to the GenomePositionSearchBox
|
|
1132
|
-
- Prefix track names with their assembly
|
|
1133
|
-
|
|
1134
|
-
## v0.6.9
|
|
1135
|
-
|
|
1136
|
-
- Lower the default resolution of lines for performance reasons
|
|
1137
|
-
- Added outsideLeft, outsideRight, outsideTop and outsideBottom
|
|
1138
|
-
as available axis positions
|
|
1139
|
-
|
|
1140
|
-
## v0.6.8
|
|
1141
|
-
|
|
1142
|
-
- Component sizes are adjsuted on component load
|
|
1143
|
-
- Genome position search box styling is set to not
|
|
1144
|
-
have a bottom margin
|
|
1145
|
-
|
|
1146
|
-
## v0.6.7
|
|
1147
|
-
|
|
1148
|
-
- Unbounded functionality to increase the size of the layout if new tracks are
|
|
1149
|
-
added which increase its size
|
|
1150
|
-
- Configurable track label background opacity
|
|
1151
|
-
- Fixed: vertical colorbar label mirroring
|
|
1152
|
-
|
|
1153
|
-
## v0.6.6
|
|
1154
|
-
|
|
1155
|
-
- Bug fix: closing a track which had a value scale lock with another track now
|
|
1156
|
-
works
|
|
1157
|
-
|
|
1158
|
-
## v0.6.5
|
|
1159
|
-
|
|
1160
|
-
- Bug fix: tracks rendered with locked scale, rather than just the colorbar
|
|
1161
|
-
- Bug fix: locked line scales
|
|
1162
|
-
- Bug fix: assorted other track locking, scale and colorbar bugs
|
|
1163
|
-
|
|
1164
|
-
## v0.6.4
|
|
1165
|
-
|
|
1166
|
-
- Added value scale locking
|
|
1167
|
-
- Fixed bug where newly added heatmaps didn't render (syncTrackObjects needs
|
|
1168
|
-
to call applyZoomTransform)
|
|
1169
|
-
- Fixed bug where new chromosome axis didn't appear after being added - Had to call animate after the chromosome info was received
|
|
1170
|
-
|
|
1171
|
-
## v0.6.3
|
|
1172
|
-
|
|
1173
|
-
- Added colorbar for Heatmaps
|
|
1174
|
-
- Draw scales on the outside of the linear tracks
|
|
1175
|
-
- Added the SquareMarkerTrack
|
|
1176
|
-
|
|
1177
|
-
## v0.6.2
|
|
1178
|
-
|
|
1179
|
-
- Scale tracks from minimum to maximum value, rather than starting at 0
|
|
1180
|
-
|
|
1181
|
-
## v0.6.1
|
|
1182
|
-
|
|
1183
|
-
- Fixed a minor issue with chromosome labels not being exported
|
|
1184
|
-
|
|
1185
|
-
## v0.6.0
|
|
1186
|
-
|
|
1187
|
-
- Automatically draw the 2D grid after the data is loaded
|
|
1188
|
-
- Add animated zoom transitions
|
|
1189
|
-
- Add public BEDPE-like API to navigate to a given location
|
|
1190
|
-
- SVG export
|
|
1191
|
-
- Testing using Karma
|
|
1192
|
-
- (Might have been in a different release) Default to interpolation-less rendering
|
|
1193
|
-
|
|
1194
|
-
## v0.5.16
|
|
1195
|
-
|
|
1196
|
-
- Fixed resizing bug
|
|
1197
|
-
|
|
1198
|
-
## v0.5.15
|
|
1199
|
-
|
|
1200
|
-
- Added mm9 chromosome labels
|
|
1201
|
-
- Draw chromosome labels on reload
|
|
1202
|
-
- Take name from track options
|
|
1203
|
-
|
|
1204
|
-
## v0.5.14
|
|
1205
|
-
|
|
1206
|
-
- Revert the initialXDomain changes Fritz introduced because they were causing
|
|
1207
|
-
issues with faithful reproduction of viewconfs
|
|
1208
|
-
- Change 'tilesetInfo not loaded message' to 'loading...' until we either get
|
|
1209
|
-
an error or the tileset is loaded
|
|
1210
|
-
- Omit certain fields from JSON export (HiGlassComponenent.getViewsAsString)
|
|
1211
|
-
|
|
1212
|
-
## v0.5.12
|
|
1213
|
-
|
|
1214
|
-
- Fixed export viewconfig link bug
|
|
1215
|
-
|
|
1216
|
-
## v0.5.11
|
|
1217
|
-
|
|
1218
|
-
- Added the fall colormap and made it the default
|
|
1219
|
-
|
|
1220
|
-
## v0.5.10
|
|
1221
|
-
|
|
1222
|
-
- Fix Chromosome2DAnnotations not being drawn by calling draw after the
|
|
1223
|
-
ChromosomeInfo is loaded
|
|
1224
|
-
- Zoom to the currently visible data
|
|
1225
|
-
- Use the minimum position to load data that is not located at the origin
|
|
1226
|
-
- Viewconf downloads work on Firefox
|
|
1227
|
-
- Alert when trying to project a viewport on the same view
|
|
1228
|
-
- Resize handle positions fixed in Firefox
|
|
1229
|
-
- Track config button icons fixed in Firefox
|
|
1230
|
-
- Only redraw in timedUpdate if track positions have changed
|
|
1231
|
-
- Fixed top and left axis not appearing bug
|
|
1232
|
-
- Fixed chromosome horizontal labels not appearing
|
|
1233
|
-
- Show minValue pixels by scaling from minValue to maxValue + minValue and
|
|
1234
|
-
adding minValue to each pixel
|
|
1235
|
-
- Fix viewport projection error when new viewconfig is passed
|
|
1236
|
-
|
|
1237
|
-
## v0.5.9
|
|
1238
|
-
|
|
1239
|
-
- Labels outside of the bounds of a track
|
|
1240
|
-
- Label colors
|
|
1241
|
-
|
|
1242
|
-
## v0.5.8
|
|
1243
|
-
|
|
1244
|
-
- A host of performance improvements
|
|
1245
|
-
|
|
1246
|
-
## v0.5.7
|
|
1247
|
-
|
|
1248
|
-
- Empty accidental release
|
|
1249
|
-
|
|
1250
|
-
## v0.5.6
|
|
1251
|
-
|
|
1252
|
-
- Add log scaling to line tracks
|
|
1253
|
-
- Add colors to line tracks
|
|
1254
|
-
- Add width option to 2D grid
|
|
1255
|
-
- Add color option to 2D grid
|
|
1256
|
-
|
|
1257
|
-
## v0.5.5
|
|
1258
|
-
|
|
1259
|
-
- Add per-view `zoomFixed` settings
|
|
1260
|
-
- Added configurable viewport projection colors (projectionFillColor,
|
|
1261
|
-
projectionStrokeColor)
|
|
1262
|
-
- Added an empty .npmignore to prevent it from excluding the dist/
|
|
1263
|
-
directory specified in the .gitignore
|
|
1264
|
-
- Enhance 2D annotations by supporting RGBA, fill and stroke-dependent coloring,
|
|
1265
|
-
and locus-wise min width / height definitions
|
|
1266
|
-
- Remove builds. Use NPM
|
|
1267
|
-
|
|
1268
|
-
## v0.5.4
|
|
1269
|
-
|
|
1270
|
-
- Fixed bug related to the selection of the plot type
|
|
1271
|
-
- Update existing tracks before adding new ones in syncTrackObjects
|
|
1272
|
-
- Removed the "Move up" menu item
|
|
1273
|
-
- Deep copy incoming viewconfs so that changing them outside of the component
|
|
1274
|
-
leads to an update
|
|
1275
|
-
- Added onLocationChanged event listener
|
|
1276
|
-
|
|
1277
|
-
## v0.5.3
|
|
1278
|
-
|
|
1279
|
-
- Forgot to bump the version number in 0.5.2
|
|
1280
|
-
|
|
1281
|
-
## v0.5.2
|
|
1282
|
-
|
|
1283
|
-
- Don't draw data that extends beyond the end of the assembly
|
|
1284
|
-
- Fixed bug where data was being hidden in empty (all 0) tiles - Changed minVisibleValue and maxVisibleValue in TiledPixiTrack
|
|
1285
|
-
- Label the horizontal and vertical line tracks by default
|
|
1286
|
-
|
|
1287
|
-
## v0.5.1
|
|
1288
|
-
|
|
1289
|
-
- Configurable gene annotation colors
|
|
1290
|
-
- Added chromosome annotations tracks for programmatically addeable
|
|
1291
|
-
annotations
|
|
1292
|
-
- Fixed the 'Cannot read property 0 of undefined' bug when tileset info is
|
|
1293
|
-
inaccessible
|
|
1294
|
-
- Remove track resize handles when the component isn't editable
|
|
1295
|
-
- Fix bug associated with setting a new initial[X/Y]Domain where the
|
|
1296
|
-
cumulativeCenterOffset wasn't being reset
|
|
1297
|
-
- Bug fix where if a view doesn't have a uid we should assign it one
|
|
1298
|
-
|
|
1299
|
-
## v0.5.0
|
|
1300
|
-
|
|
1301
|
-
- Default to 12 columns
|
|
1302
|
-
- Display a warning if tileset info isn't found
|
|
1303
|
-
- Use 16bit floats for heatmap data
|
|
1304
|
-
|
|
1305
|
-
## v0.4.40
|
|
1306
|
-
|
|
1307
|
-
- Remove default colormap from viewconfig
|
|
1308
|
-
|
|
1309
|
-
## v0.4.39
|
|
1310
|
-
|
|
1311
|
-
- Switch cog and close buttons
|
|
1312
|
-
|
|
1313
|
-
## v0.4.33
|
|
1314
|
-
|
|
1315
|
-
- New header colors
|
|
1316
|
-
|
|
1317
|
-
## v0.4.32
|
|
1318
|
-
|
|
1319
|
-
- Reduced the number of tiles requested by the horizontal heatmap track
|
|
1320
|
-
- Removed console log statements
|
|
1321
|
-
|
|
1322
|
-
## v0.4.31
|
|
1323
|
-
|
|
1324
|
-
- Fixed regression and compatibility change with new zoom and location locking
|
|
1325
|
-
- Fixed regression in the selection dragging
|
|
1326
|
-
|
|
1327
|
-
## v0.4.30
|
|
1328
|
-
|
|
1329
|
-
- Added a minimum width to left-axis so that it doesn't only show the last two
|
|
1330
|
-
digits by default
|
|
1331
|
-
|
|
1332
|
-
* Added horizontal and vertical heatmaps
|
|
1333
|
-
|
|
1334
|
-
- Styling changes for the Configure track controls
|
|
1335
|
-
- Fixed the bug with AddTrackMenu cancel button turning black by properly
|
|
1336
|
-
increasing the number of visible tilesets in TilesetFinder
|
|
1337
|
-
- Added options to allow flipping horizontal and vertical charts
|
|
1338
|
-
- Fixed NaN prefix bug
|
|
1339
|
-
- Fixed invalid negative value attributes for <rect> bug
|
|
1340
|
-
|
|
1341
|
-
## v0.4.29
|
|
1342
|
-
|
|
1343
|
-
- Moved default heatmap information to lower right hand corner
|
|
1344
|
-
- Fixed a bug which distorted the view when initialized with an initial X
|
|
1345
|
-
scale and Y scale
|
|
1346
|
-
- Added white to red, white to green and white to blue scales
|
|
1347
|
-
- Added axes for the 1D tracks
|
|
1348
|
-
- Took the ID out of the view header
|
|
1349
|
-
- Added a white border behind the track controls
|
|
1350
|
-
|
|
1351
|
-
## v0.4.28
|
|
1352
|
-
|
|
1353
|
-
- Fixed critical regression where track replacement wasn't working because
|
|
1354
|
-
newly created tracks didn't have their options set
|
|
1355
|
-
- Fixed a regression where track movement wasn't working because TiledPlot
|
|
1356
|
-
wasn't being updated
|
|
1357
|
-
- Increase the size of the tileset selector
|
|
1358
|
-
|
|
1359
|
-
## v0.4.27
|
|
1360
|
-
|
|
1361
|
-
- Changed config.js Chromosome Labels to Chromosome Axis
|
|
1362
|
-
- Fixed default option setting so that it doesn't override provided options
|
|
1363
|
-
- Adding zoom limit option to heatmap
|
|
1364
|
-
- Add current resolution to the track label
|
|
1365
|
-
- Fixed regression caused by "Fast redraw by tiling commit"
|
|
1366
|
-
- Hitting enter in the genome position search box initiates a search
|
|
1367
|
-
|
|
1368
|
-
## v0.4.26
|
|
1369
|
-
|
|
1370
|
-
- Fixed close button
|
|
1371
|
-
|
|
1372
|
-
## v0.4.25
|
|
1373
|
-
|
|
1374
|
-
- Fractional zoom lock
|
|
1375
|
-
- Faster config menu loading
|
|
1376
|
-
- Faster track addition by limiting the udpates of TiledPlot (using
|
|
1377
|
-
shouldComponentUpdate)
|
|
1378
|
-
|
|
1379
|
-
## v0.4.21
|
|
1380
|
-
|
|
1381
|
-
- Chromosome grid positions start at position 1
|
|
1382
|
-
- Export link includes 'app'
|
|
1383
|
-
|
|
1384
|
-
## v0.4.20
|
|
1385
|
-
|
|
1386
|
-
- Changed tile API location to use included server value rather than
|
|
1387
|
-
prepending '//'
|
|
1388
|
-
|
|
1389
|
-
## v0.4.19
|
|
1390
|
-
|
|
1391
|
-
- Removed dist directory from .gitignore
|
|
1392
|
-
|
|
1393
|
-
## v0.4.18
|
|
1394
|
-
|
|
1395
|
-
- Use production react in the build
|
|
1396
|
-
- Added dist to .gitignore
|
|
1397
|
-
|
|
1398
|
-
## v0.4.17
|
|
1399
|
-
|
|
1400
|
-
- Updated default view config
|
|
1401
|
-
- Wider ticks
|
|
1402
|
-
|
|
1403
|
-
## v0.4.16
|
|
1404
|
-
|
|
1405
|
-
- Fritz's public API
|
|
1406
|
-
|
|
1407
|
-
## v0.4.15
|
|
1408
|
-
|
|
1409
|
-
- Fritz's lazy animation
|
|
1410
|
-
- Fritz's public API
|
|
1411
|
-
- Minimum height for tracks can be specified in track type definition in
|
|
1412
|
-
config.js
|
|
1413
|
-
- New chromosome 2D grid (for hg19)
|
|
1414
|
-
- New chromosome 1D axis (for hg19)
|
|
1415
|
-
- New chromosome horizontal axis (for hg19)
|