helixmind 0.6.4 → 0.7.0

package/dist/cli/brain/stdout-capture.js.map

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package/dist/cli/brain/web-chat-handler.d.ts.map

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package/dist/cli/brain/web-chat-handler.js

@@ -49,7 +49,14 @@ export async function handleWebChat(text, chatId, deps, callbacks) {
     // Remote users must not bypass security prompts. Tool calls that require
     // user approval will be auto-denied since there is no terminal readline,
     // effectively limiting web chats to read-only + auto-approved tools.
+    //
+    // FIX: BRAIN-F1 — flag this PermissionManager as origin='web-chat' so
+    // PermissionManager.check() additionally forces filesystem/shell-affecting
+    // tools to 'ask' level (and promptUser() then denies because there is no
+    // terminal). This closes the classifier loophole where read/list/search
+    // shell commands were being auto-allowed for remote chats.
     const permissions = new PermissionManager();
+    permissions.setOrigin('web-chat');
     // Signal start
     callbacks.onStarted(chatId);
     try {

package/dist/cli/brain/web-chat-handler.js.map

@@ -1 +1 @@
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package/dist/cli/checkpoints/revert.d.ts

@@ -4,6 +4,11 @@ import type { ToolMessage } from '../providers/types.js';
 export interface RevertResult {
     type: 'chat' | 'code' | 'both';
     filesReverted: number;
+    filesNotReverted: number;
+    failures: Array<{
+        path: string;
+        error: string;
+    }>;
     messagesRemoved: number;
     checkpointsRemoved: number;
 }

package/dist/cli/checkpoints/revert.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"revert.d.ts","sourceRoot":"","sources":["../../../src/cli/checkpoints/revert.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAc,YAAY,EAAE,MAAM,YAAY,CAAC;AAC3D,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAClD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AAEzD,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;IAC/B,aAAa,EAAE,MAAM,CAAC;IACtB,gBAAgB,EAAE,MAAM,CAAC;IACzB,QAAQ,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IACjD,eAAe,EAAE,MAAM,CAAC;IACxB,kBAAkB,EAAE,MAAM,CAAC;CAC5B;AAaD;;GAEG;AACH,wBAAgB,cAAc,CAC5B,YAAY,EAAE,MAAM,EACpB,KAAK,EAAE,eAAe,EACtB,YAAY,EAAE,WAAW,EAAE,EAC3B,cAAc,EAAE,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,GACvD,YAAY,CAwCd;AAED;;GAEG;AACH,wBAAgB,cAAc,CAC5B,YAAY,EAAE,MAAM,EACpB,KAAK,EAAE,eAAe,GACrB,YAAY,CAsEd;AAED;;GAEG;AACH,wBAAgB,UAAU,CACxB,YAAY,EAAE,MAAM,EACpB,KAAK,EAAE,eAAe,EACtB,YAAY,EAAE,WAAW,EAAE,EAC3B,cAAc,EAAE,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,GACvD,YAAY,CAoCd;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAClC,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC9B,WAAW,EAAE,MAAM,GAClB,YAAY,EAAE,GAAG,SAAS,CAqC5B;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,SAAS,EAAE,YAAY,EAAE,GAAG,SAAS,GAAG,IAAI,CAmB7E"}

package/dist/cli/checkpoints/revert.js

@@ -1,23 +1,53 @@
-import { writeFileSync, readFileSync, existsSync } from 'node:fs';
+import { writeFileSync, readFileSync, existsSync, unlinkSync } from 'node:fs';
 import { resolve } from 'node:path';
+// FIX: CHECKPOINT-003 — detect binary content via null-byte scan in first 8 KB.
+// Previously every file was read/written as UTF-8, which permanently corrupted
+// any non-text file (images, archives, wasm, compiled artifacts) on revert.
+function isBinaryBuffer(buf) {
+    const end = Math.min(buf.length, 8192);
+    for (let i = 0; i < end; i++) {
+        if (buf[i] === 0)
+            return true;
+    }
+    return false;
+}
 /**
  * Revert chat history to a checkpoint. Code changes remain.
  */
 export function revertChatOnly(checkpointId, store, agentHistory, simpleMessages) {
     const checkpoint = store.get(checkpointId);
     if (!checkpoint) {
-        return { type: 'chat', filesReverted: 0, messagesRemoved: 0, checkpointsRemoved: 0 };
+        return {
+            type: 'chat',
+            filesReverted: 0,
+            filesNotReverted: 0,
+            failures: [],
+            messagesRemoved: 0,
+            checkpointsRemoved: 0,
+        };
     }
     const messageIdx = checkpoint.messageIndex;
     // Truncate chat histories
     const removedMessages = agentHistory.length - messageIdx;
     agentHistory.length = Math.min(agentHistory.length, messageIdx);
-    simpleMessages.length = Math.min(simpleMessages.length, Math.ceil(messageIdx / 2));
+    // FIX: CHECKPOINT-002 — prefer the checkpoint's own simpleMessageIndex when
+    // present. Fall back to Math.ceil(messageIdx/2) for legacy checkpoints so
+    // existing persisted data keeps its prior behavior. New checkpoints that
+    // populate simpleMessageIndex get the exact truncation they asked for.
+    const sIdx = checkpoint.simpleMessageIndex;
+    if (typeof sIdx === 'number' && Number.isInteger(sIdx) && sIdx >= 0) {
+        simpleMessages.length = Math.min(simpleMessages.length, sIdx);
+    }
+    else {
+        simpleMessages.length = Math.min(simpleMessages.length, Math.ceil(messageIdx / 2));
+    }
     // Remove checkpoints after this one
     const removedCheckpoints = store.truncateAfter(checkpointId);
     return {
         type: 'chat',
         filesReverted: 0,
+        filesNotReverted: 0,
+        failures: [],
         messagesRemoved: Math.max(0, removedMessages),
         checkpointsRemoved: removedCheckpoints.length,
     };
@@ -28,6 +58,8 @@ export function revertChatOnly(checkpointId, store, agentHistory, simpleMessages
 export function revertCodeOnly(checkpointId, store) {
     const checkpointsAfter = store.getFrom(checkpointId);
     let filesReverted = 0;
+    let filesNotReverted = 0;
+    const failures = [];
     // Collect all file changes from this checkpoint onwards, in reverse order
     const revertActions = [];
     const seen = new Set();
@@ -39,7 +71,12 @@ export function revertCodeOnly(checkpointId, store) {
         for (const snap of cp.fileSnapshots) {
             if (!seen.has(snap.path)) {
                 seen.add(snap.path);
-                revertActions.push({ path: snap.path, content: snap.contentBefore });
+                // FIX: CHECKPOINT-003 — honor explicit binary snapshots.
+                const binary = Boolean(snap.binary);
+                const content = binary && typeof snap.contentBeforeBase64 === 'string'
+                    ? Buffer.from(snap.contentBeforeBase64, 'base64')
+                    : snap.contentBefore;
+                revertActions.push({ path: snap.path, content, binary });
             }
         }
     }
@@ -47,16 +84,35 @@ export function revertCodeOnly(checkpointId, store) {
     for (const action of revertActions) {
         try {
             if (action.content === null) {
-                // File didn't exist before — for safety, we don't delete, just note it
-                // Don't count as reverted since we didn't actually restore anything
+                // FIX: CHECKPOINT-004 — newly-created files ARE removed on revert so
+                // the user's disk state matches their mental model. Previously these
+                // files silently survived and the user believed everything rolled back.
+                if (existsSync(action.path)) {
+                    try {
+                        unlinkSync(action.path);
+                        filesReverted++;
+                    }
+                    catch (err) {
+                        filesNotReverted++;
+                        failures.push({ path: action.path, error: err instanceof Error ? err.message : String(err) });
+                    }
+                }
+                else {
+                    // File already gone — treat as success (idempotent).
+                }
+            }
+            else if (Buffer.isBuffer(action.content)) {
+                writeFileSync(action.path, action.content);
+                filesReverted++;
             }
             else {
                 writeFileSync(action.path, action.content, 'utf-8');
                 filesReverted++;
             }
         }
-        catch {
-            // Best effort
+        catch (err) {
+            filesNotReverted++;
+            failures.push({ path: action.path, error: err instanceof Error ? err.message : String(err) });
         }
     }
     // Remove checkpoints after this one (keep the target checkpoint)
@@ -64,6 +120,8 @@ export function revertCodeOnly(checkpointId, store) {
     return {
         type: 'code',
         filesReverted,
+        filesNotReverted,
+        failures,
         messagesRemoved: 0,
         checkpointsRemoved: removed.length,
     };
@@ -80,10 +138,19 @@ export function revertBoth(checkpointId, store, agentHistory, simpleMessages) {
         const messageIdx = checkpoint.messageIndex;
         const removedMessages = agentHistory.length - messageIdx;
         agentHistory.length = Math.min(agentHistory.length, messageIdx);
-        simpleMessages.length = Math.min(simpleMessages.length, Math.ceil(messageIdx / 2));
+        // FIX: CHECKPOINT-002 — same logic as revertChatOnly.
+        const sIdx = checkpoint.simpleMessageIndex;
+        if (typeof sIdx === 'number' && Number.isInteger(sIdx) && sIdx >= 0) {
+            simpleMessages.length = Math.min(simpleMessages.length, sIdx);
+        }
+        else {
+            simpleMessages.length = Math.min(simpleMessages.length, messageIdx);
+        }
         return {
             type: 'both',
             filesReverted: codeResult.filesReverted,
+            filesNotReverted: codeResult.filesNotReverted,
+            failures: codeResult.failures,
             messagesRemoved: Math.max(0, removedMessages),
             checkpointsRemoved: codeResult.checkpointsRemoved,
         };
@@ -91,6 +158,8 @@ export function revertBoth(checkpointId, store, agentHistory, simpleMessages) {
     return {
         type: 'both',
         filesReverted: codeResult.filesReverted,
+        filesNotReverted: codeResult.filesNotReverted,
+        failures: codeResult.failures,
         messagesRemoved: 0,
         checkpointsRemoved: codeResult.checkpointsRemoved,
     };
@@ -109,9 +178,20 @@ export function captureFileSnapshots(toolName, input, projectRoot) {
         return undefined;
     const absPath = resolve(projectRoot, relPath);
     let contentBefore = null;
+    let contentBeforeBase64;
+    let binary = false;
     try {
         if (existsSync(absPath)) {
-            contentBefore = readFileSync(absPath, 'utf-8');
+            // FIX: CHECKPOINT-003 — read as Buffer so binary files survive the round-trip.
+            const buf = readFileSync(absPath);
+            if (isBinaryBuffer(buf)) {
+                binary = true;
+                contentBeforeBase64 = buf.toString('base64');
+                contentBefore = ''; // placeholder — real data is in contentBeforeBase64
+            }
+            else {
+                contentBefore = buf.toString('utf-8');
+            }
         }
     }
     catch {
@@ -122,6 +202,7 @@ export function captureFileSnapshots(toolName, input, projectRoot) {
             path: absPath,
             contentBefore,
             contentAfter: '', // placeholder — filled after execution
+            ...(binary ? { binary: true, contentBeforeBase64 } : {}),
         }];
 }
 /**
@@ -133,7 +214,15 @@ export function fillSnapshotAfter(snapshots) {
     for (const snap of snapshots) {
         try {
             if (existsSync(snap.path)) {
-                snap.contentAfter = readFileSync(snap.path, 'utf-8');
+                const buf = readFileSync(snap.path);
+                if (isBinaryBuffer(buf)) {
+                    snap.binary = true;
+                    snap.contentAfterBase64 = buf.toString('base64');
+                    snap.contentAfter = '';
+                }
+                else {
+                    snap.contentAfter = buf.toString('utf-8');
+                }
             }
         }
         catch {

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@@ -1 +1 @@
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package/dist/cli/checkpoints/store.d.ts

@@ -3,6 +3,9 @@ export interface FileSnapshot {
     path: string;
     contentBefore: string | null;
     contentAfter: string;
+    binary?: boolean;
+    contentBeforeBase64?: string;
+    contentAfterBase64?: string;
 }
 export interface Checkpoint {
     id: number;

package/dist/cli/checkpoints/store.d.ts.map

@@ -1 +1 @@
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package/dist/cli/commands/chat.d.ts.map

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