helixlife-expert-cli 0.5.4 → 0.5.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/cli/bin/helixlife-expert.js +1 -1
- package/cli/dist/core/api/client.js +2 -2
- package/cli/dist/core/api/client.js.map +1 -1
- package/cli/dist/modules/meta/forest-plot-selection.d.ts +51 -0
- package/cli/dist/modules/meta/forest-plot-selection.d.ts.map +1 -0
- package/cli/dist/modules/meta/forest-plot-selection.js +154 -0
- package/cli/dist/modules/meta/forest-plot-selection.js.map +1 -0
- package/package.json +1 -1
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@@ -20,8 +20,8 @@ function readTraceId(response) {
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const CLI_VERSION = getPackageVersion();
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// 前台通用请求头，与 vip.helixlife.cn 浏览器调用保持一致
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const PLATFORM_HEADERS = {
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platform: "
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source: "
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platform: "client",
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source: "CLIENT",
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website: "helixlife-ai",
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// 后端按此身份放行专家接口；拼写以后端约定为准，缺了会判无权限
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"x-user-identity": "open-sience-pro",
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@@ -1 +1 @@
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1
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-
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1
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/**
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* 森林图合并结局预览。
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*
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* 后端 `effect-quantity-plot/execute` 不接收结局 id，按每项研究的首条可用
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* Binary 取数：该条数值缺失则顺延下一条 Binary。本模块用同一规则生成预览，
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* 并在名称或时间点不一致时给出拒绝文案。
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*
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* 已核对的结局接口只有列表、单条编辑、删除、execute、verify-for-plot、
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* plot-data/export。没有调整子结局顺序的接口，也没有向森林图指定结局 id 的参数。
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*/
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export declare const FOREST_PLOT_SELECTION_RULE = "\u68EE\u6797\u56FE\u9ED8\u8BA4\u5408\u5E76\u6BCF\u9879\u7814\u7A76\u7684\u9996\u6761\u53EF\u7528\u4E8C\u5206\u7C7B\uFF08Binary\uFF09\u6570\u636E\uFF1B\u82E5\u8BE5\u6761\u6570\u503C\u7F3A\u5931\uFF0C\u5219\u987A\u5EF6\u8BE5\u7814\u7A76\u7684\u4E0B\u4E00\u6761\u6709\u6570\u503C\u7684 Binary\u3002\u8FDE\u7EED\u578B\u548C\u751F\u5B58\u578B\u4E0D\u53C2\u4E0E\u672C\u6B21\u5408\u5E76\u3002";
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export declare const FOREST_PLOT_ORDER_UNSUPPORTED_REASON = "\u5F53\u524D\u7ED3\u5C40\u63A5\u53E3\u53EA\u80FD\u7F16\u8F91\u5355\u6761\u5B57\u6BB5\u6216\u5220\u9664\u8BB0\u5F55\uFF0C\u4E0D\u80FD\u8C03\u6574\u540C\u4E00\u7814\u7A76\u5185\u7684\u7ED3\u5C40\u987A\u5E8F\uFF1B\u68EE\u6797\u56FE\u751F\u6210\u63A5\u53E3\u4E5F\u4E0D\u63A5\u53D7\u7ED3\u5C40 id\u3002\u8BF7\u7528\u300C\u7F16\u8F91\u5185\u5BB9\u300D\u6216\u300C\u5220\u9664\u7ED3\u5C40\u6307\u6807\u300D\uFF0C\u4F7F\u8981\u5408\u5E76\u7684\u4E8C\u5206\u7C7B\u6210\u4E3A\u8BE5\u7814\u7A76\u7B2C\u4E00\u6761\u6709\u6570\u503C\u7684 Binary\uFF0C\u4E14\u5404\u7814\u7A76\u7684\u7ED3\u5C40\u540D\u79F0\u4E0E\u68C0\u6D4B\u65F6\u95F4\u70B9\u4E00\u81F4\u3002";
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export type ForestPlotMismatchField = "outcomeName" | "detectionTimePoint" | "missingBinary";
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export interface ForestPlotSelectedOutcome {
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study: string;
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pmid: string;
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parentIndex: number;
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childIndex: number;
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outcomeId: string;
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outcomeName: string;
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detectionTimePoint: string;
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}
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export interface ForestPlotMissingStudy {
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study: string;
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pmid: string;
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parentIndex: number;
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}
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export interface ForestPlotSelection {
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rule: string;
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consistent: boolean;
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mismatchFields: ForestPlotMismatchField[];
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items: ForestPlotSelectedOutcome[];
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missingStudies: ForestPlotMissingStudy[];
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/** Agent 必须原样贴进回复，禁止改写。 */
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previewMarkdown: string;
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adjustOrder: {
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supported: false;
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reason: string;
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};
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}
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/**
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* 按后端规则从结局列表原始记录中选出每项研究即将合并的 Binary。
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*
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* @param studies 结局列表的父级研究记录（含 `outcomes` 数组，顺序即子表顺序）。
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*/
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export declare function buildForestPlotSelection(studies: unknown[]): ForestPlotSelection;
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/** 供 Agent 原样粘贴的确认清单。 */
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export declare function renderForestPlotSelectionPreview(selection: ForestPlotSelection): string;
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/** `analysis forest create` 在调用绘图接口前抛出的说明。 */
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export declare function forestPlotSelectionBlockMessage(selection: ForestPlotSelection): string;
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//# sourceMappingURL=forest-plot-selection.d.ts.map
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{"version":3,"file":"forest-plot-selection.d.ts","sourceRoot":"","sources":["../../../src/modules/meta/forest-plot-selection.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,eAAO,MAAM,0BAA0B,sYACwC,CAAC;AAEhF,eAAO,MAAM,oCAAoC,2oBACuE,CAAC;AAEzH,MAAM,MAAM,uBAAuB,GAC/B,aAAa,GACb,oBAAoB,GACpB,eAAe,CAAC;AAEpB,MAAM,WAAW,yBAAyB;IACxC,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,kBAAkB,EAAE,MAAM,CAAC;CAC5B;AAED,MAAM,WAAW,sBAAsB;IACrC,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,mBAAmB;IAClC,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,OAAO,CAAC;IACpB,cAAc,EAAE,uBAAuB,EAAE,CAAC;IAC1C,KAAK,EAAE,yBAAyB,EAAE,CAAC;IACnC,cAAc,EAAE,sBAAsB,EAAE,CAAC;IACzC,2BAA2B;IAC3B,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE;QACX,SAAS,EAAE,KAAK,CAAC;QACjB,MAAM,EAAE,MAAM,CAAC;KAChB,CAAC;CACH;AAoED;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,OAAO,EAAE,OAAO,EAAE,GAAG,mBAAmB,CAyDhF;AAED,yBAAyB;AACzB,wBAAgB,gCAAgC,CAC9C,SAAS,EAAE,mBAAmB,GAC7B,MAAM,CAmBR;AAED,8CAA8C;AAC9C,wBAAgB,+BAA+B,CAC7C,SAAS,EAAE,mBAAmB,GAC7B,MAAM,CAKR"}
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/**
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* 森林图合并结局预览。
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*
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* 后端 `effect-quantity-plot/execute` 不接收结局 id，按每项研究的首条可用
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* Binary 取数：该条数值缺失则顺延下一条 Binary。本模块用同一规则生成预览，
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* 并在名称或时间点不一致时给出拒绝文案。
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*
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* 已核对的结局接口只有列表、单条编辑、删除、execute、verify-for-plot、
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* plot-data/export。没有调整子结局顺序的接口，也没有向森林图指定结局 id 的参数。
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*/
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export const FOREST_PLOT_SELECTION_RULE = "森林图默认合并每项研究的首条可用二分类（Binary）数据；若该条数值缺失，则顺延该研究的下一条有数值的 Binary。连续型和生存型不参与本次合并。";
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export const FOREST_PLOT_ORDER_UNSUPPORTED_REASON = "当前结局接口只能编辑单条字段或删除记录，不能调整同一研究内的结局顺序；森林图生成接口也不接受结局 id。请用「编辑内容」或「删除结局指标」，使要合并的二分类成为该研究第一条有数值的 Binary，且各研究的结局名称与检测时间点一致。";
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function describeMismatches(fields) {
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const parts = [];
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if (fields.includes("missingBinary")) {
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parts.push("有研究缺少可用二分类数据");
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}
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const compared = fields.filter((field) => field === "outcomeName" || field === "detectionTimePoint");
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if (compared.length > 0) {
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const labels = compared.map((field) => field === "outcomeName" ? "结局名称" : "检测时间点");
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parts.push(`${labels.join("、")}不一致`);
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}
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return `${parts.join("；")}。`;
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}
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function unwrapRecord(value) {
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return value && typeof value === "object" && !Array.isArray(value)
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? value
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: {};
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}
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function readText(value) {
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if (Array.isArray(value)) {
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return value
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.map((item) => readText(item))
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.filter(Boolean)
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.join(", ");
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}
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if (value === undefined || value === null)
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return "";
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return String(value).trim();
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}
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function hasNumericPayload(value) {
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const text = readText(value);
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return text !== "" && text !== "/" && text !== "-" && text !== "NA" && text !== "N/A";
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}
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function dataRows(value) {
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if (!Array.isArray(value))
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return [];
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return value.map((item) => unwrapRecord(item));
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}
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function binaryDataPresent(outcome) {
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const rows = [
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...dataRows(outcome.g1_data),
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...dataRows(outcome.g2_data),
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];
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return rows.some((row) => hasNumericPayload(row.value));
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}
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function isBinary(outcome) {
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const type = readText(outcome.g1_outcome_type || outcome.g2_outcome_type);
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return type.toLowerCase() === "binary";
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}
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function studyLabel(study, pmid) {
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const name = study || "未命名研究";
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return pmid ? `${name}（PMID ${pmid}）` : name;
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}
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function timeLabel(value) {
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return value || "（空）";
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}
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+
/**
|
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+
* 按后端规则从结局列表原始记录中选出每项研究即将合并的 Binary。
|
|
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|
+
*
|
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|
+
* @param studies 结局列表的父级研究记录（含 `outcomes` 数组，顺序即子表顺序）。
|
|
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+
*/
|
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+
export function buildForestPlotSelection(studies) {
|
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const items = [];
|
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+
const missingStudies = [];
|
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+
studies.forEach((studyItem, studyOffset) => {
|
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const study = unwrapRecord(studyItem);
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+
const parentIndex = studyOffset + 1;
|
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+
const studyName = readText(study.study);
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const pmid = readText(study.pmid);
|
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|
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const outcomes = Array.isArray(study.outcomes) ? study.outcomes : [];
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let selected;
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+
outcomes.forEach((outcomeItem, outcomeOffset) => {
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if (selected)
|
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+
return;
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+
const outcome = unwrapRecord(outcomeItem);
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|
+
if (!isBinary(outcome) || !binaryDataPresent(outcome))
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+
return;
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+
selected = {
|
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study: studyName,
|
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+
pmid,
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parentIndex,
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+
childIndex: outcomeOffset + 1,
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outcomeId: readText(outcome.id),
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outcomeName: readText(outcome.outcome_name),
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detectionTimePoint: readText(outcome.detection_time_point),
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+
};
|
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|
+
});
|
|
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|
+
if (selected) {
|
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|
+
items.push(selected);
|
|
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|
+
return;
|
|
102
|
+
}
|
|
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|
+
missingStudies.push({ study: studyName, pmid, parentIndex });
|
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+
});
|
|
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|
+
const mismatchFields = [];
|
|
106
|
+
if (studies.length === 0 || missingStudies.length > 0) {
|
|
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|
+
mismatchFields.push("missingBinary");
|
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|
+
}
|
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109
|
+
const names = new Set(items.map((item) => item.outcomeName));
|
|
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|
+
const times = new Set(items.map((item) => item.detectionTimePoint));
|
|
111
|
+
if (items.length > 1 && names.size > 1)
|
|
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|
+
mismatchFields.push("outcomeName");
|
|
113
|
+
if (items.length > 1 && times.size > 1)
|
|
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|
+
mismatchFields.push("detectionTimePoint");
|
|
115
|
+
const selection = {
|
|
116
|
+
rule: FOREST_PLOT_SELECTION_RULE,
|
|
117
|
+
consistent: mismatchFields.length === 0,
|
|
118
|
+
mismatchFields,
|
|
119
|
+
items,
|
|
120
|
+
missingStudies,
|
|
121
|
+
previewMarkdown: "",
|
|
122
|
+
adjustOrder: {
|
|
123
|
+
supported: false,
|
|
124
|
+
reason: FOREST_PLOT_ORDER_UNSUPPORTED_REASON,
|
|
125
|
+
},
|
|
126
|
+
};
|
|
127
|
+
selection.previewMarkdown = renderForestPlotSelectionPreview(selection);
|
|
128
|
+
return selection;
|
|
129
|
+
}
|
|
130
|
+
/** 供 Agent 原样粘贴的确认清单。 */
|
|
131
|
+
export function renderForestPlotSelectionPreview(selection) {
|
|
132
|
+
const lines = [selection.rule, "", "即将合并的结局："];
|
|
133
|
+
if (selection.items.length === 0) {
|
|
134
|
+
lines.push("- （没有可合并的二分类数据）");
|
|
135
|
+
}
|
|
136
|
+
for (const item of selection.items) {
|
|
137
|
+
lines.push(`- ${studyLabel(item.study, item.pmid)}：${item.outcomeName || "（空）"}；时间点 ${timeLabel(item.detectionTimePoint)}；子表序号 ${item.childIndex}`);
|
|
138
|
+
}
|
|
139
|
+
for (const missing of selection.missingStudies) {
|
|
140
|
+
lines.push(`- ${studyLabel(missing.study, missing.pmid)}：没有可合并的二分类数据`);
|
|
141
|
+
}
|
|
142
|
+
if (!selection.consistent) {
|
|
143
|
+
lines.push("", `不能直接生成森林图：${describeMismatches(selection.mismatchFields)}`, selection.adjustOrder.reason);
|
|
144
|
+
}
|
|
145
|
+
return lines.join("\n");
|
|
146
|
+
}
|
|
147
|
+
/** `analysis forest create` 在调用绘图接口前抛出的说明。 */
|
|
148
|
+
export function forestPlotSelectionBlockMessage(selection) {
|
|
149
|
+
return [
|
|
150
|
+
"已拒绝生成森林图。",
|
|
151
|
+
selection.previewMarkdown,
|
|
152
|
+
].join("\n");
|
|
153
|
+
}
|
|
154
|
+
//# sourceMappingURL=forest-plot-selection.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
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+
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