helixlife-expert-cli 0.3.2 → 0.4.0

package/README.md

@@ -62,7 +62,7 @@ npm publish
 
 > **发布约定**：本仓库 npm 包**不含** Skill。每次发给用户一个专家目录；替换 Agent 侧 Skill 即可，**不必**为此升 CLI 版本。
 
-安装 / 升级 / 错误码的正文只维护在 `cli/skills/_fragments/common.md`。数据分析、课题方案另有 `external-xt.md` / `external-newidea.md`，由 `npm run sync:skills` 追加到对应专家的 `references/common.md`。**不要**把 `_fragments` 或整个 `cli/skills/` 发给用户。
+安装 / 升级 / 错误码的正文只维护在 `cli/skills/_fragments/common.md`。课题方案另有 `external-newidea.md`，由 `npm run sync:skills` 追加到该专家的 `references/common.md`。**不要**把 `_fragments` 或整个 `cli/skills/` 发给用户。
 
 ### 交付某一个专家
 
@@ -126,7 +126,7 @@ helixlife-expert-cli/
 | Meta 分析 | `helixlife-expert meta workflow create` | 已实现（选题/检索/筛选/抽提/统计/写作六步全流程） |
 | 基金写作 | `helixlife-expert fund nsfc hypothesis create` | 已实现（国自然四步 + 临床申请书三步） |
 | SCI 写作 | `helixlife-expert sci outline create` | 已实现（拟定主题/确认提纲/生成全文三步流程） |
-| 数据分析 | `helixlife-expert analysis info` | 已实现（经外部仙桃 xt CLI 执行，共用本地凭证） |
+| 数据分析 | `helixlife-expert analysis tool exec` | 已实现（本 CLI 直接调用菜单、生信统一入口与上传接口） |
 | 文献调研 | `helixlife-expert literature workflow run` | 已实现（信息调研/结构化拆解/文献阅读/研究假设四工作流） |
 | 课题方案 | `helixlife-expert proposal clinical run` | 已实现（基础研究经外部 newidea CLI；临床研究五工作流 + 生信方案） |
 
@@ -138,7 +138,7 @@ SCI 写作专家迁移自 `helixlife-service-cli` 的 `workbench sci`，命令
 
 文献调研专家提供四个工作流（`WF01` 信息调研、`WF02` 结构化拆解、`WF03` 文献阅读、`WF04` 研究假设），命令树为 `literature workflow list|params|run`。四者均为「`params` 取动态表单 → `run` 填参执行」两步式，表单字段由后端实时返回，CLI 不做本地映射。主线为 WF01 → WF02 → WF04，工作流间数据由 Agent 串联，CLI 不隐式串。该专家不走 `site-configs` 门禁（细则见 `cli/skills/helixlife-expert-literature/references/literature.md`）。
 
-数据分析专家不在本 CLI 内实现业务命令：分析/绘图经外部仙桃 CLI（`xt`，npm：`@helixlife-ai/xiantao`）执行，与本 CLI 共用 `~/.config/helixlife/` 凭证文件，按需被动安装；Skill 细则见 `cli/skills/helixlife-expert-analysis/references/`（路由索引 + 393 项冻结目录 + 执行手册）。**禁止**执行 `xt login` / `xt status`。
+数据分析专家由本 CLI 直接执行：`helixlife-expert analysis tool search|menus|inspect|cloud|specific-search|prepare|exec` 与 `helixlife-expert analysis history list|view|download|rename|delete|save`。菜单与菜单详情走 `agent_api` 的 `/api/v1/agent/client/tool/menus`，生信统一入口走 `/api/v1/agent/client/bio-api`；文件上传仍取 `/api/v1/agent/upload/config` 后直传 OSS。凭证与其他专家相同，读 `~/.config/helixlife/`。Skill 细则见 `cli/skills/helixlife-expert-analysis/references/`（路由索引 + 393 项冻结目录 + 执行手册）。
 
 课题方案专家先做基础 / 临床 / 生信三方向识别（证据不唯一时由 Skill 弹选择器兜底）。基础研究业务经外部 newidea CLI（`newidea`，npm：`@helixlife-ai/newidea`）执行，与本 CLI 共用 `~/.config/helixlife/` 凭证文件，按需被动安装（命令不存在再 `npm install -g @helixlife-ai/newidea@latest`）；Agent 直接调用 `newidea invocation start` / `invocation process`，成功后交付 ZIP 下载链接，不落盘、不解压。**禁止**执行 `newidea login` / `newidea status` / `newidea logout`。
 

package/cli/dist/modules/analysis/api.d.ts

@@ -0,0 +1,28 @@
+import { type JsonObject } from "./json.js";
+export interface AgentResponse {
+    success?: boolean;
+    code?: number | string;
+    message?: string;
+    data?: unknown;
+}
+export interface UploadedObject {
+    fileName: string;
+    fileOss: string;
+    fileOssPath: string;
+    fileSize: number;
+    fileSizeMb: number;
+}
+export declare function encryptMenuQuery(value: unknown): string;
+export declare function resolveToolProductUuid(override: string | undefined): string;
+export declare function fetchToolMenus(toolProductUuid: string): Promise<unknown[]>;
+export declare function fetchToolMenu(menu: string, toolProductUuid: string): Promise<unknown>;
+export declare function callBioApi(body: JsonObject, options?: {
+    allowSubmittedMessage?: boolean;
+}): Promise<unknown>;
+export declare function callBioApiEnvelope(body: JsonObject, options?: {
+    allowSubmittedMessage?: boolean;
+}): Promise<AgentResponse>;
+export declare function bioBody(name: string, args: JsonObject, extra?: JsonObject): JsonObject;
+export declare function uploadLocalFile(filePath: string): Promise<UploadedObject>;
+export declare function historyId(fuid?: string): JsonObject;
+//# sourceMappingURL=api.d.ts.map

package/cli/dist/modules/analysis/api.d.ts.map

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package/cli/dist/modules/analysis/api.js

@@ -0,0 +1,265 @@
+// 数据分析 HTTP：菜单与生信入口走 agent_api 上的 /api/v1/agent/client/...，上传凭证仍走 /api/v1/agent/upload/config
+import { readFile, stat } from "node:fs/promises";
+import { basename } from "node:path";
+import { fetchWithTimeout, getDefaultAuthBaseUrl, getPackageVersion, helixlifeError, helixlifeErrorCode, NOT_AUTHENTICATED_MESSAGE, TOKEN_EXPIRED_MESSAGE, createNetworkBlockedError, isNetworkBlockedText, loadTokenFromFile, resolveUserPath, } from "../../core/index.js";
+import { ANALYSIS_BIO_API_PATH, ANALYSIS_BIO_TIMEOUT_MS, ANALYSIS_BIO_VERSION, ANALYSIS_HISTORY_UUID, ANALYSIS_MENU_TIMEOUT_MS, ANALYSIS_MENUS_PATH, ANALYSIS_UPLOAD_CONFIG_PATH, DEFAULT_TOOL_PRODUCT_UUID, } from "./constants.js";
+import { AnalysisError } from "./errors.js";
+import { clarifyConfArgsMessage } from "./overrides.js";
+import { asObject, isJsonObject, textOf } from "./json.js";
+// 菜单查询参数 f：JSON → encodeURI → base64，去掉填充等号
+export function encryptMenuQuery(value) {
+    return Buffer.from(encodeURI(JSON.stringify(value)), "utf8")
+        .toString("base64")
+        .replace(/=/g, "");
+}
+export function resolveToolProductUuid(override) {
+    const value = override?.trim();
+    return value || DEFAULT_TOOL_PRODUCT_UUID;
+}
+export async function fetchToolMenus(toolProductUuid) {
+    const data = await requestAgent(ANALYSIS_MENUS_PATH, {
+        method: "GET",
+        params: {
+            f: encryptMenuQuery({ is_all: 1, tool_product_uuid: toolProductUuid }),
+        },
+        timeoutMs: ANALYSIS_MENU_TIMEOUT_MS,
+    });
+    return Array.isArray(data) ? data : [];
+}
+export async function fetchToolMenu(menu, toolProductUuid) {
+    const path = `${ANALYSIS_MENUS_PATH}/${encodeURIComponent(menu)}`;
+    return requestAgent(path, {
+        method: "GET",
+        params: { f: encryptMenuQuery({ tool_product_uuid: toolProductUuid }) },
+        timeoutMs: ANALYSIS_MENU_TIMEOUT_MS,
+    });
+}
+export async function callBioApi(body, options) {
+    const envelope = await callBioApiEnvelope(body, options);
+    return envelope.data;
+}
+export async function callBioApiEnvelope(body, options) {
+    return requestAgentEnvelope(ANALYSIS_BIO_API_PATH, {
+        method: "POST",
+        body,
+        timeoutMs: ANALYSIS_BIO_TIMEOUT_MS,
+        allowSubmittedMessage: options?.allowSubmittedMessage,
+    });
+}
+export function bioBody(name, args, extra) {
+    return {
+        version: ANALYSIS_BIO_VERSION,
+        name,
+        ...(extra ? { extra_args: extra } : {}),
+        args,
+    };
+}
+export async function uploadLocalFile(filePath) {
+    const resolved = resolveUserPath(filePath);
+    let fileStat;
+    try {
+        fileStat = await stat(resolved);
+    }
+    catch {
+        throw new AnalysisError(`无法读取文件: ${filePath}`);
+    }
+    const buffer = await readFile(resolved);
+    const fileName = basename(resolved);
+    const ticket = await fetchUploadTicket();
+    const key = `${ticket.dir}/${fileName}`;
+    const form = new FormData();
+    form.set("key", key);
+    form.set("policy", ticket.policy);
+    form.set("OSSAccessKeyId", ticket.access_id);
+    form.set("success_action_status", "200");
+    form.set("signature", ticket.signature);
+    form.set("file", new Blob([new Uint8Array(buffer)]), fileName);
+    const host = ticket.host;
+    let response;
+    try {
+        response = await fetchWithTimeout(host, {
+            method: "POST",
+            headers: { "x-oss-object-acl": "public-read" },
+            body: form,
+        }, ANALYSIS_MENU_TIMEOUT_MS);
+    }
+    catch (error) {
+        if (error instanceof helixlifeError)
+            throw error;
+        throw new AnalysisError("文件上传失败，请检查网络后重试。");
+    }
+    if (!response.ok) {
+        throw new AnalysisError(`文件上传失败 (${response.status})`);
+    }
+    const hostRoot = host.replace(/\/$/, "");
+    return {
+        fileName,
+        fileOss: `${hostRoot}/${key}`,
+        fileOssPath: key,
+        fileSize: fileStat.size,
+        fileSizeMb: Number((fileStat.size / (1024 * 1024)).toFixed(2)),
+    };
+}
+async function fetchUploadTicket() {
+    const data = await requestAgent(ANALYSIS_UPLOAD_CONFIG_PATH, {
+        method: "GET",
+        params: { type: "bio", oss_type: "bio" },
+        timeoutMs: ANALYSIS_MENU_TIMEOUT_MS,
+    });
+    const ticket = decodeUploadTicket(data);
+    if (!ticket.host || !ticket.dir || !ticket.policy || !ticket.access_id || !ticket.signature) {
+        throw new AnalysisError("上传凭证缺少 host、dir 或签名字段。");
+    }
+    return ticket;
+}
+function decodeUploadTicket(data) {
+    const source = typeof data === "string" ? parseUploadTicket(data) : asObject(data);
+    if (!source) {
+        throw new AnalysisError("上传凭证不是有效 JSON。");
+    }
+    return {
+        host: textOf(source.host),
+        dir: textOf(source.dir),
+        policy: textOf(source.policy),
+        access_id: textOf(source.access_id),
+        signature: textOf(source.signature),
+    };
+}
+function parseUploadTicket(encoded) {
+    const decoded = Buffer.from(encoded, "base64").toString("utf8");
+    const json = decodeURIComponent(decoded.replaceAll("+", " "));
+    try {
+        const parsed = JSON.parse(json);
+        return asObject(parsed);
+    }
+    catch {
+        throw new AnalysisError("上传凭证不是有效 JSON。");
+    }
+}
+async function requestAgent(path, options) {
+    const envelope = await requestAgentEnvelope(path, options);
+    return envelope.data;
+}
+async function requestAgentEnvelope(path, options) {
+    const token = loadTokenFromFile();
+    if (!token) {
+        throw new helixlifeError(helixlifeErrorCode.NOT_AUTHENTICATED, NOT_AUTHENTICATED_MESSAGE);
+    }
+    const baseUrl = getDefaultAuthBaseUrl();
+    const url = new URL(path, baseUrl.endsWith("/") ? baseUrl : `${baseUrl}/`);
+    if (options.params) {
+        for (const [key, value] of Object.entries(options.params)) {
+            url.searchParams.set(key, String(value));
+        }
+    }
+    const version = getPackageVersion();
+    const headers = {
+        Accept: "application/json",
+        Authorization: `Bearer ${token}`,
+        platform: "pc",
+        source: "PC",
+        website: "helixlife-ai",
+        "x-user-identity": "open-sience-pro",
+        origin: baseUrl,
+        referer: baseUrl,
+        "User-Agent": `helix-cli/${version}`,
+        "X-Client-Version": version,
+    };
+    if (options.body) {
+        headers["Content-Type"] = "application/json";
+    }
+    const response = await fetchWithTimeout(url.toString(), {
+        method: options.method,
+        headers,
+        body: options.body ? JSON.stringify(options.body) : undefined,
+    }, options.timeoutMs);
+    const text = await response.text();
+    const payload = parsePayload(text, response.status);
+    if (!response.ok) {
+        if (options.allowSubmittedMessage && textOf(payload.message).includes("任务提交成功")) {
+            return payload;
+        }
+        throw mapHttpError(response.status, payload, text, url);
+    }
+    if (payload.success === false) {
+        if (options.allowSubmittedMessage && textOf(payload.message).includes("任务提交成功")) {
+            return payload;
+        }
+        throw mapBusinessError(payload);
+    }
+    return payload;
+}
+function parsePayload(text, status) {
+    if (!text.trim()) {
+        return {};
+    }
+    try {
+        const parsed = JSON.parse(text);
+        if (isJsonObject(parsed)) {
+            return parsed;
+        }
+        return { data: parsed };
+    }
+    catch {
+        throw new AnalysisError(`服务返回了无法解析的响应（HTTP ${status}）。`);
+    }
+}
+function mapHttpError(status, payload, text, url) {
+    if (status === 401) {
+        return new helixlifeError(helixlifeErrorCode.TOKEN_EXPIRED, TOKEN_EXPIRED_MESSAGE);
+    }
+    if (status === 403 && isNetworkBlockedText(text)) {
+        return createNetworkBlockedError(url.hostname);
+    }
+    return mapBusinessError(payload, status);
+}
+function mapBusinessError(payload, status) {
+    const message = clarifyConfArgsMessage(textOf(payload.message) || "请求失败");
+    const code = String(payload.code ?? "");
+    if (isAuthMessage(message)) {
+        return new AnalysisError("您的授权已过期或无效，请重新完成授权。");
+    }
+    if (code.startsWith("403") || message.includes("无权限") || message.includes("权限")) {
+        const link = readPurchaseLink(payload) ?? "https://www.helixlife.cn/main/vip";
+        return new AnalysisError(`您的账号暂无使用权限，需要购买会员。购买链接: ${link}`);
+    }
+    if (code === "5000000101") {
+        return new AnalysisError("当前网络状态异常，请前往 https://www.helixlife.cn 联系客服");
+    }
+    if (code === "4000020101" || code === "400008") {
+        return new AnalysisError("您的账号状态异常，请联系 https://www.helixlife.cn");
+    }
+    if (code === "400004") {
+        return new AnalysisError("该菜单或商品已下架，请更换 tool_product_uuid 或 menu uuid。");
+    }
+    if (code === "50000" || code === "40000" || code === "40004") {
+        return new AnalysisError("请前往 https://www.helixlife.cn 联系客服");
+    }
+    if (message.includes("速率限制")) {
+        return new AnalysisError("建议次日再试");
+    }
+    if (status && status !== 200) {
+        return new AnalysisError(message || `请求失败 (${status})`);
+    }
+    return new AnalysisError(message || "操作失败，请联系客服 https://www.helixlife.cn");
+}
+function isAuthMessage(message) {
+    return (message.includes("未授权") ||
+        message.includes("请登录") ||
+        message.includes("重新登录") ||
+        message.includes("身份验证已过期"));
+}
+function readPurchaseLink(payload) {
+    const data = asObject(payload.data);
+    const link = textOf(data?.vip_buy_link);
+    if (link)
+        return link;
+    return textOf(payload.message).match(/https?:\/\/[^\s，。)）]+/)?.[0];
+}
+export function historyId(fuid) {
+    return {
+        ...(fuid ? { fuid } : {}),
+        uuid: ANALYSIS_HISTORY_UUID,
+    };
+}
+//# sourceMappingURL=api.js.map

package/cli/dist/modules/analysis/api.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"api.js","sourceRoot":"","sources":["../../../src/modules/analysis/api.ts"],"names":[],"mappings":"AAAA,8FAA8F;AAC9F,OAAO,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAC;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AACrC,OAAO,EACL,gBAAgB,EAChB,qBAAqB,EACrB,iBAAiB,EACjB,cAAc,EACd,kBAAkB,EAClB,yBAAyB,EACzB,qBAAqB,EACrB,yBAAyB,EACzB,oBAAoB,EACpB,iBAAiB,EACjB,eAAe,GAChB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EACL,qBAAqB,EACrB,uBAAuB,EACvB,oBAAoB,EACpB,qBAAqB,EACrB,wBAAwB,EACxB,mBAAmB,EACnB,2BAA2B,EAC3B,yBAAyB,GAC1B,MAAM,gBAAgB,CAAC;AACxB,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAE,sBAAsB,EAAE,MAAM,gBAAgB,CAAC;AACxD,OAAO,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,EAAmB,MAAM,WAAW,CAAC;AAyB5E,4CAA4C;AAC5C,MAAM,UAAU,gBAAgB,CAAC,KAAc;IAC7C,OAAO,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,MAAM,CAAC;SACzD,QAAQ,CAAC,QAAQ,CAAC;SAClB,OAAO,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;AACvB,CAAC;AAED,MAAM,UAAU,sBAAsB,CAAC,QAA4B;IACjE,MAAM,KAAK,GAAG,QAAQ,EAAE,IAAI,EAAE,CAAC;IAC/B,OAAO,KAAK,IAAI,yBAAyB,CAAC;AAC5C,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,eAAuB;IAC1D,MAAM,IAAI,GAAG,MAAM,YAAY,CAAC,mBAAmB,EAAE;QACnD,MAAM,EAAE,KAAK;QACb,MAAM,EAAE;YACN,CAAC,EAAE,gBAAgB,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,iBAAiB,EAAE,eAAe,EAAE,CAAC;SACvE;QACD,SAAS,EAAE,wBAAwB;KACpC,CAAC,CAAC;IACH,OAAO,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;AACzC,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,IAAY,EAAE,eAAuB;IACvE,MAAM,IAAI,GAAG,GAAG,mBAAmB,IAAI,kBAAkB,CAAC,IAAI,CAAC,EAAE,CAAC;IAClE,OAAO,YAAY,CAAC,IAAI,EAAE;QACxB,MAAM,EAAE,KAAK;QACb,MAAM,EAAE,EAAE,CAAC,EAAE,gBAAgB,CAAC,EAAE,iBAAiB,EAAE,eAAe,EAAE,CAAC,EAAE;QACvE,SAAS,EAAE,wBAAwB;KACpC,CAAC,CAAC;AACL,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,UAAU,CAC9B,IAAgB,EAChB,OAA6C;IAE7C,MAAM,QAAQ,GAAG,MAAM,kBAAkB,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;IACzD,OAAO,QAAQ,CAAC,IAAI,CAAC;AACvB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,IAAgB,EAChB,OAA6C;IAE7C,OAAO,oBAAoB,CAAC,qBAAqB,EAAE;QACjD,MAAM,EAAE,MAAM;QACd,IAAI;QACJ,SAAS,EAAE,uBAAuB;QAClC,qBAAqB,EAAE,OAAO,EAAE,qBAAqB;KACtD,CAAC,CAAC;AACL,CAAC;AAED,MAAM,UAAU,OAAO,CAAC,IAAY,EAAE,IAAgB,EAAE,KAAkB;IACxE,OAAO;QACL,OAAO,EAAE,oBAAoB;QAC7B,IAAI;QACJ,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,UAAU,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACvC,IAAI;KACL,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,QAAgB;IACpD,MAAM,QAAQ,GAAG,eAAe,CAAC,QAAQ,CAAC,CAAC;IAC3C,IAAI,QAAQ,CAAC;IACb,IAAI,CAAC;QACH,QAAQ,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,CAAC;IAClC,CAAC;IAAC,MAAM,CAAC;QACP,MAAM,IAAI,aAAa,CAAC,WAAW,QAAQ,EAAE,CAAC,CAAC;IACjD,CAAC;IACD,MAAM,MAAM,GAAG,MAAM,QAAQ,CAAC,QAAQ,CAAC,CAAC;IACxC,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC;IACpC,MAAM,MAAM,GAAG,MAAM,iBAAiB,EAAE,CAAC;IACzC,MAAM,GAAG,GAAG,GAAG,MAAM,CAAC,GAAG,IAAI,QAAQ,EAAE,CAAC;IACxC,MAAM,IAAI,GAAG,IAAI,QAAQ,EAAE,CAAC;IAC5B,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;IACrB,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IAClC,IAAI,CAAC,GAAG,CAAC,gBAAgB,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC;IAC7C,IAAI,CAAC,GAAG,CAAC,uBAAuB,EAAE,KAAK,CAAC,CAAC;IACzC,IAAI,CAAC,GAAG,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC;IACxC,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,IAAI,IAAI,CAAC,CAAC,IAAI,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;IAE/D,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC;IACzB,IAAI,QAAkB,CAAC;IACvB,IAAI,CAAC;QACH,QAAQ,GAAG,MAAM,gBAAgB,CAC/B,IAAI,EACJ;YACE,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,EAAE,kBAAkB,EAAE,aAAa,EAAE;YAC9C,IAAI,EAAE,IAAI;SACX,EACD,wBAAwB,CACzB,CAAC;IACJ,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,IAAI,KAAK,YAAY,cAAc;YAAE,MAAM,KAAK,CAAC;QACjD,MAAM,IAAI,aAAa,CAAC,kBAAkB,CAAC,CAAC;IAC9C,CAAC;IACD,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,MAAM,IAAI,aAAa,CAAC,WAAW,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC;IACzD,CAAC;IACD,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;IACzC,OAAO;QACL,QAAQ;QACR,OAAO,EAAE,GAAG,QAAQ,IAAI,GAAG,EAAE;QAC7B,WAAW,EAAE,GAAG;QAChB,QAAQ,EAAE,QAAQ,CAAC,IAAI;QACvB,UAAU,EAAE,MAAM,CAAC,CAAC,QAAQ,CAAC,IAAI,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;KAC/D,CAAC;AACJ,CAAC;AAED,KAAK,UAAU,iBAAiB;IAC9B,MAAM,IAAI,GAAG,MAAM,YAAY,CAAC,2BAA2B,EAAE;QAC3D,MAAM,EAAE,KAAK;QACb,MAAM,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,EAAE,KAAK,EAAE;QACxC,SAAS,EAAE,wBAAwB;KACpC,CAAC,CAAC;IACH,MAAM,MAAM,GAAG,kBAAkB,CAAC,IAAI,CAAC,CAAC;IACxC,IAAI,CAAC,MAAM,CAAC,IAAI,IAAI,CAAC,MAAM,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,IAAI,CAAC,MAAM,CAAC,SAAS,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC;QAC5F,MAAM,IAAI,aAAa,CAAC,wBAAwB,CAAC,CAAC;IACpD,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,SAAS,kBAAkB,CAAC,IAAa;IACvC,MAAM,MAAM,GAAG,OAAO,IAAI,KAAK,QAAQ,CAAC,CAAC,CAAC,iBAAiB,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;IACnF,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,MAAM,IAAI,aAAa,CAAC,gBAAgB,CAAC,CAAC;IAC5C,CAAC;IACD,OAAO;QACL,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC;QACzB,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC;QACvB,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC;QAC7B,SAAS,EAAE,MAAM,CAAC,MAAM,CAAC,SAAS,CAAC;QACnC,SAAS,EAAE,MAAM,CAAC,MAAM,CAAC,SAAS,CAAC;KACpC,CAAC;AACJ,CAAC;AAED,SAAS,iBAAiB,CAAC,OAAe;IACxC,MAAM,OAAO,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;IAC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package/cli/dist/modules/analysis/bio.d.ts

@@ -0,0 +1,159 @@
+import { type JsonObject } from "./json.js";
+export interface FetchAllResult {
+    args_main: unknown[];
+    args_specific: unknown[];
+    args_data: unknown[];
+    notice: string;
+    id: JsonObject;
+}
+export interface DownloadItem {
+    device: string;
+    endpoint: string;
+    fuid: string;
+    index: unknown;
+    info: unknown;
+    label: string;
+    pos: unknown;
+    sign: unknown;
+}
+export interface HistoryPage {
+    currentPage: number;
+    info: string;
+    lastPage: number;
+    perPage: number;
+    records: JsonObject[];
+    total: number;
+}
+export interface CloudPage {
+    columnAttrs: unknown[];
+    currentPage: number;
+    filter: {
+        options: unknown[];
+        value: unknown[];
+    };
+    info: string;
+    lastPage: number;
+    perPage: number;
+    records: JsonObject[];
+    total: number;
+}
+export interface SubmitResult {
+    asyncSubmission: boolean;
+    body: string;
+    downloads: DownloadItem[];
+    file?: string;
+    message: string;
+}
+export interface UploadRef {
+    fileName: string;
+    fileOss: string;
+    fileOssPath?: string;
+    fileSize: number;
+    fileSizeMb?: number;
+}
+export type PreparedInput = {
+    kind: "none";
+} | {
+    kind: "cloud";
+    cloud: {
+        key: string;
+        label: string;
+        record: JsonObject;
+    };
+} | {
+    kind: "record";
+    record: {
+        key: string;
+        label: string;
+        moduleId: string;
+        moduleName: string;
+        recordId: string;
+        recordName: string;
+        time: string;
+    };
+} | {
+    kind: "upload";
+    uploads: Array<{
+        key: string;
+        label: string;
+        upload: UploadRef;
+    }>;
+};
+export declare function fetchAllArgs(moduleId: string, uuid: string): Promise<FetchAllResult>;
+export declare function updateArgs(input: {
+    moduleId: string;
+    uuid: string;
+    argsData: JsonObject;
+    argsKey: string;
+    argsMain: JsonObject;
+    argsSpecific: JsonObject;
+}): Promise<FetchAllResult>;
+export declare function searchSpecificOptions(input: {
+    moduleId: string;
+    uuid: string;
+    argsData: JsonObject;
+    argsKey: string;
+    listen: unknown;
+    searchString: string;
+    selected: unknown;
+}): Promise<unknown[]>;
+export declare function fetchCloudPage(input: {
+    moduleId: string;
+    uuid: string;
+    argsKey: string;
+    currentPage: number;
+    filter: string;
+    selectedRecord?: JsonObject;
+}): Promise<CloudPage>;
+export declare function verifyUpload(input: {
+    moduleId: string;
+    uuid: string;
+    argsMain: JsonObject;
+    uploads: Array<{
+        key: string;
+        upload: UploadRef;
+    }>;
+}): Promise<{
+    duid: string;
+    schema: unknown[];
+}>;
+export declare function submitModule(input: {
+    moduleId: string;
+    uuid: string;
+    route: string;
+    argsMain: JsonObject;
+    argsSpecific: JsonObject;
+    argsData: JsonObject;
+}): Promise<SubmitResult>;
+export declare function resolveDownloadUrl(input: {
+    moduleId: string;
+    uuid: string;
+    item: DownloadItem;
+}): Promise<{
+    url: string;
+    fileName?: string;
+}>;
+export declare function saveOutput(input: {
+    fuid: string;
+    uuid: string;
+    moduleId: string;
+    name: string;
+}): Promise<void>;
+export declare function fetchHistoryPage(currentPage: number): Promise<HistoryPage>;
+export declare function fetchHistoryDownloads(fuid: string): Promise<{
+    body: string;
+    downloads: DownloadItem[];
+}>;
+export declare function renameHistory(fuid: string, newName: string): Promise<void>;
+export declare function deleteHistory(fuid: string): Promise<void>;
+export declare function findHistoryByFuid(fuid: string): Promise<JsonObject | null>;
+export declare function historyStatus(record: JsonObject): string;
+export declare function isHistoryFinished(status: string): boolean;
+export declare function isHistoryFailed(status: string): boolean;
+export declare function collectResultDownloads(data: unknown): DownloadItem[];
+export declare function uploadInfo(uploads: Array<{
+    key: string;
+    upload: UploadRef;
+}>): JsonObject;
+export declare function buildSubmitArgsData(duid: string, input: PreparedInput): JsonObject;
+//# sourceMappingURL=bio.d.ts.map

package/cli/dist/modules/analysis/bio.d.ts.map

@@ -0,0 +1 @@
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