helixlife-expert-cli 0.3.1 → 0.3.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +3 -3
- package/cli/bin/helixlife-expert.js +1 -1
- package/cli/dist/modules/analysis/api.d.ts +28 -0
- package/cli/dist/modules/analysis/api.d.ts.map +1 -0
- package/cli/dist/modules/analysis/api.js +264 -0
- package/cli/dist/modules/analysis/api.js.map +1 -0
- package/cli/dist/modules/analysis/bio.d.ts +159 -0
- package/cli/dist/modules/analysis/bio.d.ts.map +1 -0
- package/cli/dist/modules/analysis/bio.js +275 -0
- package/cli/dist/modules/analysis/bio.js.map +1 -0
- package/cli/dist/modules/analysis/catalog.d.ts +21 -0
- package/cli/dist/modules/analysis/catalog.d.ts.map +1 -0
- package/cli/dist/modules/analysis/catalog.js +123 -0
- package/cli/dist/modules/analysis/catalog.js.map +1 -0
- package/cli/dist/modules/analysis/commands.d.ts +15 -0
- package/cli/dist/modules/analysis/commands.d.ts.map +1 -0
- package/cli/dist/modules/analysis/commands.js +463 -0
- package/cli/dist/modules/analysis/commands.js.map +1 -0
- package/cli/dist/modules/analysis/constants.d.ts +14 -0
- package/cli/dist/modules/analysis/constants.d.ts.map +1 -1
- package/cli/dist/modules/analysis/constants.js +15 -0
- package/cli/dist/modules/analysis/constants.js.map +1 -1
- package/cli/dist/modules/analysis/errors.d.ts +11 -0
- package/cli/dist/modules/analysis/errors.d.ts.map +1 -0
- package/cli/dist/modules/analysis/errors.js +84 -0
- package/cli/dist/modules/analysis/errors.js.map +1 -0
- package/cli/dist/modules/analysis/files.d.ts +2 -0
- package/cli/dist/modules/analysis/files.d.ts.map +1 -0
- package/cli/dist/modules/analysis/files.js +33 -0
- package/cli/dist/modules/analysis/files.js.map +1 -0
- package/cli/dist/modules/analysis/flags.d.ts +27 -0
- package/cli/dist/modules/analysis/flags.d.ts.map +1 -0
- package/cli/dist/modules/analysis/flags.js +58 -0
- package/cli/dist/modules/analysis/flags.js.map +1 -0
- package/cli/dist/modules/analysis/index.d.ts.map +1 -1
- package/cli/dist/modules/analysis/index.js +154 -7
- package/cli/dist/modules/analysis/index.js.map +1 -1
- package/cli/dist/modules/analysis/inputs.d.ts +36 -0
- package/cli/dist/modules/analysis/inputs.d.ts.map +1 -0
- package/cli/dist/modules/analysis/inputs.js +120 -0
- package/cli/dist/modules/analysis/inputs.js.map +1 -0
- package/cli/dist/modules/analysis/json.d.ts +7 -0
- package/cli/dist/modules/analysis/json.d.ts.map +1 -0
- package/cli/dist/modules/analysis/json.js +30 -0
- package/cli/dist/modules/analysis/json.js.map +1 -0
- package/cli/dist/modules/analysis/overrides.d.ts +5 -0
- package/cli/dist/modules/analysis/overrides.d.ts.map +1 -0
- package/cli/dist/modules/analysis/overrides.js +150 -0
- package/cli/dist/modules/analysis/overrides.js.map +1 -0
- package/cli/dist/modules/analysis/prepare.d.ts +47 -0
- package/cli/dist/modules/analysis/prepare.d.ts.map +1 -0
- package/cli/dist/modules/analysis/prepare.js +910 -0
- package/cli/dist/modules/analysis/prepare.js.map +1 -0
- package/cli/dist/modules/analysis/schema.d.ts +5 -0
- package/cli/dist/modules/analysis/schema.d.ts.map +1 -0
- package/cli/dist/modules/analysis/schema.js +39 -0
- package/cli/dist/modules/analysis/schema.js.map +1 -0
- package/cli/dist/modules/expert-scaffold.d.ts.map +1 -1
- package/cli/dist/modules/expert-scaffold.js +1 -0
- package/cli/dist/modules/expert-scaffold.js.map +1 -1
- package/cli/dist/modules/fund/index.d.ts.map +1 -1
- package/cli/dist/modules/fund/index.js +1 -0
- package/cli/dist/modules/fund/index.js.map +1 -1
- package/cli/dist/modules/literature/index.d.ts.map +1 -1
- package/cli/dist/modules/literature/index.js +1 -0
- package/cli/dist/modules/literature/index.js.map +1 -1
- package/cli/dist/modules/meta/index.d.ts.map +1 -1
- package/cli/dist/modules/meta/index.js +1 -0
- package/cli/dist/modules/meta/index.js.map +1 -1
- package/cli/dist/modules/proposal/index.d.ts.map +1 -1
- package/cli/dist/modules/proposal/index.js +2 -0
- package/cli/dist/modules/proposal/index.js.map +1 -1
- package/cli/dist/modules/sci/index.d.ts.map +1 -1
- package/cli/dist/modules/sci/index.js +1 -0
- package/cli/dist/modules/sci/index.js.map +1 -1
- package/cli/dist/modules/shared/workflow-app/command.js +11 -11
- package/cli/dist/modules/shared/workflow-app/command.js.map +1 -1
- package/cli/dist/modules/upgrade/index.d.ts.map +1 -1
- package/cli/dist/modules/upgrade/index.js +1 -0
- package/cli/dist/modules/upgrade/index.js.map +1 -1
- package/cli/dist/program.d.ts.map +1 -1
- package/cli/dist/program.js +3 -1
- package/cli/dist/program.js.map +1 -1
- package/package.json +1 -1
|
@@ -0,0 +1,150 @@
|
|
|
1
|
+
import { readFile } from "node:fs/promises";
|
|
2
|
+
import { AnalysisError } from "./errors.js";
|
|
3
|
+
import { asObject, isJsonObject } from "./json.js";
|
|
4
|
+
import { resolveUserPath } from "../../core/paths.js";
|
|
5
|
+
// --set 写入 args_main,路径末段不是 value 时自动补 .value
|
|
6
|
+
export function parseSetOverrides(entries) {
|
|
7
|
+
const result = {};
|
|
8
|
+
for (const entry of entries ?? []) {
|
|
9
|
+
const splitAt = entry.indexOf("=");
|
|
10
|
+
if (splitAt <= 0 || splitAt === entry.length - 1) {
|
|
11
|
+
throw new AnalysisError(`--set 参数格式不正确: ${entry}`);
|
|
12
|
+
}
|
|
13
|
+
const rawPath = entry.slice(0, splitAt).trim();
|
|
14
|
+
const rawValue = entry.slice(splitAt + 1).trim();
|
|
15
|
+
const parts = rawPath.split(".").filter(Boolean);
|
|
16
|
+
if (parts.length === 0) {
|
|
17
|
+
throw new AnalysisError(`--set 参数格式不正确: ${entry}`);
|
|
18
|
+
}
|
|
19
|
+
const path = parts.at(-1) === "value" ? parts : [...parts, "value"];
|
|
20
|
+
assignObjectPath(result, path, parseOverrideValue(rawValue, "--set"));
|
|
21
|
+
}
|
|
22
|
+
return result;
|
|
23
|
+
}
|
|
24
|
+
export function applySpecificOverrides(base, entries) {
|
|
25
|
+
const result = structuredClone(base);
|
|
26
|
+
for (const entry of entries ?? []) {
|
|
27
|
+
const splitAt = entry.indexOf("=");
|
|
28
|
+
if (splitAt <= 0 || splitAt === entry.length - 1) {
|
|
29
|
+
throw new AnalysisError(`--specific 参数格式不正确: ${entry}`);
|
|
30
|
+
}
|
|
31
|
+
const rawPath = entry.slice(0, splitAt).trim();
|
|
32
|
+
const rawValue = entry.slice(splitAt + 1).trim();
|
|
33
|
+
if (!rawPath) {
|
|
34
|
+
throw new AnalysisError(`--specific 参数格式不正确: ${entry}`);
|
|
35
|
+
}
|
|
36
|
+
const parts = rawPath.split(".").filter(Boolean);
|
|
37
|
+
if (parts.length === 0) {
|
|
38
|
+
throw new AnalysisError(`--specific 参数格式不正确: ${entry}`);
|
|
39
|
+
}
|
|
40
|
+
if (parts.length === 1) {
|
|
41
|
+
result[parts[0]] = parseOverrideValue(rawValue, "--specific");
|
|
42
|
+
continue;
|
|
43
|
+
}
|
|
44
|
+
assignNested(result, parts, parseOverrideValue(rawValue, "--specific"), "--specific");
|
|
45
|
+
}
|
|
46
|
+
return result;
|
|
47
|
+
}
|
|
48
|
+
// --config 文件:优先 plots[module].argsMain,其次 argsMain,否则整份对象当作覆盖
|
|
49
|
+
export async function loadArgsMainConfig(moduleId, configPath) {
|
|
50
|
+
if (!configPath) {
|
|
51
|
+
return {};
|
|
52
|
+
}
|
|
53
|
+
const raw = await readFile(resolveUserPath(configPath), "utf8");
|
|
54
|
+
let parsed;
|
|
55
|
+
try {
|
|
56
|
+
parsed = JSON.parse(raw);
|
|
57
|
+
}
|
|
58
|
+
catch {
|
|
59
|
+
throw new AnalysisError(`--config 不是合法 JSON。`);
|
|
60
|
+
}
|
|
61
|
+
if (!isJsonObject(parsed)) {
|
|
62
|
+
throw new AnalysisError(`JSON 配置格式不正确: ${configPath}`);
|
|
63
|
+
}
|
|
64
|
+
const plots = asObject(parsed.plots);
|
|
65
|
+
const moduleConfig = plots ? asObject(plots[moduleId]) : undefined;
|
|
66
|
+
const moduleArgs = moduleConfig ? asObject(moduleConfig.argsMain) : undefined;
|
|
67
|
+
if (moduleArgs) {
|
|
68
|
+
return moduleArgs;
|
|
69
|
+
}
|
|
70
|
+
const argsMain = asObject(parsed.argsMain);
|
|
71
|
+
return argsMain ?? parsed;
|
|
72
|
+
}
|
|
73
|
+
function parseOverrideValue(raw, flag) {
|
|
74
|
+
if (raw === "true")
|
|
75
|
+
return true;
|
|
76
|
+
if (raw === "false")
|
|
77
|
+
return false;
|
|
78
|
+
if (raw === "null")
|
|
79
|
+
return null;
|
|
80
|
+
if (/^-?\d+(\.\d+)?$/.test(raw))
|
|
81
|
+
return Number(raw);
|
|
82
|
+
if (raw.startsWith("{") || raw.startsWith("[") || raw.startsWith('"')) {
|
|
83
|
+
try {
|
|
84
|
+
return JSON.parse(raw);
|
|
85
|
+
}
|
|
86
|
+
catch {
|
|
87
|
+
throw new AnalysisError(`${flag} 参数值不是合法 JSON: ${raw}`);
|
|
88
|
+
}
|
|
89
|
+
}
|
|
90
|
+
return raw;
|
|
91
|
+
}
|
|
92
|
+
function assignObjectPath(target, path, value) {
|
|
93
|
+
let cursor = target;
|
|
94
|
+
for (const key of path.slice(0, -1)) {
|
|
95
|
+
const next = cursor[key];
|
|
96
|
+
if (!isJsonObject(next)) {
|
|
97
|
+
cursor[key] = {};
|
|
98
|
+
}
|
|
99
|
+
cursor = cursor[key];
|
|
100
|
+
}
|
|
101
|
+
cursor[path.at(-1)] = value;
|
|
102
|
+
}
|
|
103
|
+
function assignNested(target, path, value, flag) {
|
|
104
|
+
let cursor = target;
|
|
105
|
+
for (let index = 0; index < path.length - 1; index += 1) {
|
|
106
|
+
const key = path[index];
|
|
107
|
+
const nextKey = path[index + 1];
|
|
108
|
+
const current = readChild(cursor, key, flag);
|
|
109
|
+
if (isJsonObject(current) || Array.isArray(current)) {
|
|
110
|
+
cursor = current;
|
|
111
|
+
continue;
|
|
112
|
+
}
|
|
113
|
+
const created = isIndex(nextKey) ? [] : {};
|
|
114
|
+
writeChild(cursor, key, created, flag);
|
|
115
|
+
cursor = created;
|
|
116
|
+
}
|
|
117
|
+
writeChild(cursor, path.at(-1), value, flag);
|
|
118
|
+
}
|
|
119
|
+
function readChild(target, key, flag) {
|
|
120
|
+
if (Array.isArray(target)) {
|
|
121
|
+
return target[requireIndex(key, flag)];
|
|
122
|
+
}
|
|
123
|
+
if (isJsonObject(target)) {
|
|
124
|
+
return target[key];
|
|
125
|
+
}
|
|
126
|
+
return undefined;
|
|
127
|
+
}
|
|
128
|
+
function writeChild(target, key, value, flag) {
|
|
129
|
+
if (Array.isArray(target)) {
|
|
130
|
+
const index = requireIndex(key, flag);
|
|
131
|
+
if (index > target.length) {
|
|
132
|
+
throw new AnalysisError(`${flag} 数组索引超出范围: ${key}`);
|
|
133
|
+
}
|
|
134
|
+
target[index] = value;
|
|
135
|
+
return;
|
|
136
|
+
}
|
|
137
|
+
if (isJsonObject(target)) {
|
|
138
|
+
target[key] = value;
|
|
139
|
+
}
|
|
140
|
+
}
|
|
141
|
+
function requireIndex(raw, flag) {
|
|
142
|
+
if (!isIndex(raw)) {
|
|
143
|
+
throw new AnalysisError(`${flag} 数组路径必须使用非负整数索引: ${raw}`);
|
|
144
|
+
}
|
|
145
|
+
return Number(raw);
|
|
146
|
+
}
|
|
147
|
+
function isIndex(raw) {
|
|
148
|
+
return /^(0|[1-9]\d*)$/.test(raw);
|
|
149
|
+
}
|
|
150
|
+
//# sourceMappingURL=overrides.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"overrides.js","sourceRoot":"","sources":["../../../src/modules/analysis/overrides.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAC5C,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAE,QAAQ,EAAE,YAAY,EAAmB,MAAM,WAAW,CAAC;AACpE,OAAO,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAEtD,8CAA8C;AAC9C,MAAM,UAAU,iBAAiB,CAAC,OAA6B;IAC7D,MAAM,MAAM,GAAe,EAAE,CAAC;IAC9B,KAAK,MAAM,KAAK,IAAI,OAAO,IAAI,EAAE,EAAE,CAAC;QAClC,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;QACnC,IAAI,OAAO,IAAI,CAAC,IAAI,OAAO,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACjD,MAAM,IAAI,aAAa,CAAC,kBAAkB,KAAK,EAAE,CAAC,CAAC;QACrD,CAAC;QACD,MAAM,OAAO,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,OAAO,CAAC,CAAC,IAAI,EAAE,CAAC;QAC/C,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;QACjD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QACjD,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,MAAM,IAAI,aAAa,CAAC,kBAAkB,KAAK,EAAE,CAAC,CAAC;QACrD,CAAC;QACD,MAAM,IAAI,GAAG,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,KAAK,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,EAAE,OAAO,CAAC,CAAC;QACpE,gBAAgB,CAAC,MAAM,EAAE,IAAI,EAAE,kBAAkB,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC,CAAC;IACxE,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,sBAAsB,CAAC,IAAgB,EAAE,OAA6B;IACpF,MAAM,MAAM,GAAG,eAAe,CAAC,IAAI,CAAC,CAAC;IACrC,KAAK,MAAM,KAAK,IAAI,OAAO,IAAI,EAAE,EAAE,CAAC;QAClC,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;QACnC,IAAI,OAAO,IAAI,CAAC,IAAI,OAAO,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACjD,MAAM,IAAI,aAAa,CAAC,uBAAuB,KAAK,EAAE,CAAC,CAAC;QAC1D,CAAC;QACD,MAAM,OAAO,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,OAAO,CAAC,CAAC,IAAI,EAAE,CAAC;QAC/C,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;QACjD,IAAI,CAAC,OAAO,EAAE,CAAC;YACb,MAAM,IAAI,aAAa,CAAC,uBAAuB,KAAK,EAAE,CAAC,CAAC;QAC1D,CAAC;QACD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QACjD,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,MAAM,IAAI,aAAa,CAAC,uBAAuB,KAAK,EAAE,CAAC,CAAC;QAC1D,CAAC;QACD,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,kBAAkB,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAC;YAC9D,SAAS;QACX,CAAC;QACD,YAAY,CAAC,MAAM,EAAE,KAAK,EAAE,kBAAkB,CAAC,QAAQ,EAAE,YAAY,CAAC,EAAE,YAAY,CAAC,CAAC;IACxF,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,+DAA+D;AAC/D,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,QAAgB,EAChB,UAA8B;IAE9B,IAAI,CAAC,UAAU,EAAE,CAAC;QAChB,OAAO,EAAE,CAAC;IACZ,CAAC;IACD,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,eAAe,CAAC,UAAU,CAAC,EAAE,MAAM,CAAC,CAAC;IAChE,IAAI,MAAe,CAAC;IACpB,IAAI,CAAC;QACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;IAC3B,CAAC;IAAC,MAAM,CAAC;QACP,MAAM,IAAI,aAAa,CAAC,qBAAqB,CAAC,CAAC;IACjD,CAAC;IACD,IAAI,CAAC,YAAY,CAAC,MAAM,CAAC,EAAE,CAAC;QAC1B,MAAM,IAAI,aAAa,CAAC,iBAAiB,UAAU,EAAE,CAAC,CAAC;IACzD,CAAC;IACD,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;IACrC,MAAM,YAAY,GAAG,KAAK,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IACnE,MAAM,UAAU,GAAG,YAAY,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IAC9E,IAAI,UAAU,EAAE,CAAC;QACf,OAAO,UAAU,CAAC;IACpB,CAAC;IACD,MAAM,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;IAC3C,OAAO,QAAQ,IAAI,MAAM,CAAC;AAC5B,CAAC;AAED,SAAS,kBAAkB,CAAC,GAAW,EAAE,IAAY;IACnD,IAAI,GAAG,KAAK,MAAM;QAAE,OAAO,IAAI,CAAC;IAChC,IAAI,GAAG,KAAK,OAAO;QAAE,OAAO,KAAK,CAAC;IAClC,IAAI,GAAG,KAAK,MAAM;QAAE,OAAO,IAAI,CAAC;IAChC,IAAI,iBAAiB,CAAC,IAAI,CAAC,GAAG,CAAC;QAAE,OAAO,MAAM,CAAC,GAAG,CAAC,CAAC;IACpD,IAAI,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;QACtE,IAAI,CAAC;YACH,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QACzB,CAAC;QAAC,MAAM,CAAC;YACP,MAAM,IAAI,aAAa,CAAC,GAAG,IAAI,kBAAkB,GAAG,EAAE,CAAC,CAAC;QAC1D,CAAC;IACH,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC;AAED,SAAS,gBAAgB,CAAC,MAAkB,EAAE,IAAc,EAAE,KAAc;IAC1E,IAAI,MAAM,GAAe,MAAM,CAAC;IAChC,KAAK,MAAM,GAAG,IAAI,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACpC,MAAM,IAAI,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC;QACzB,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC;YACxB,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC;QACnB,CAAC;QACD,MAAM,GAAG,MAAM,CAAC,GAAG,CAAe,CAAC;IACrC,CAAC;IACD,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAW,CAAC,GAAG,KAAK,CAAC;AACxC,CAAC;AAED,SAAS,YAAY,CAAC,MAAe,EAAE,IAAc,EAAE,KAAc,EAAE,IAAY;IACjF,IAAI,MAAM,GAAY,MAAM,CAAC;IAC7B,KAAK,IAAI,KAAK,GAAG,CAAC,EAAE,KAAK,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,KAAK,IAAI,CAAC,EAAE,CAAC;QACxD,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC;QACxB,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;QAChC,MAAM,OAAO,GAAG,SAAS,CAAC,MAAM,EAAE,GAAG,EAAE,IAAI,CAAC,CAAC;QAC7C,IAAI,YAAY,CAAC,OAAO,CAAC,IAAI,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;YACpD,MAAM,GAAG,OAAO,CAAC;YACjB,SAAS;QACX,CAAC;QACD,MAAM,OAAO,GAAY,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACpD,UAAU,CAAC,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,CAAC,CAAC;QACvC,MAAM,GAAG,OAAO,CAAC;IACnB,CAAC;IACD,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAW,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;AACzD,CAAC;AAED,SAAS,SAAS,CAAC,MAAe,EAAE,GAAW,EAAE,IAAY;IAC3D,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC;QAC1B,OAAO,MAAM,CAAC,YAAY,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC,CAAC;IACzC,CAAC;IACD,IAAI,YAAY,CAAC,MAAM,CAAC,EAAE,CAAC;QACzB,OAAO,MAAM,CAAC,GAAG,CAAC,CAAC;IACrB,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,SAAS,UAAU,CAAC,MAAe,EAAE,GAAW,EAAE,KAAc,EAAE,IAAY;IAC5E,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC;QAC1B,MAAM,KAAK,GAAG,YAAY,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;QACtC,IAAI,KAAK,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC;YAC1B,MAAM,IAAI,aAAa,CAAC,GAAG,IAAI,cAAc,GAAG,EAAE,CAAC,CAAC;QACtD,CAAC;QACD,MAAM,CAAC,KAAK,CAAC,GAAG,KAAK,CAAC;QACtB,OAAO;IACT,CAAC;IACD,IAAI,YAAY,CAAC,MAAM,CAAC,EAAE,CAAC;QACzB,MAAM,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC;IACtB,CAAC;AACH,CAAC;AAED,SAAS,YAAY,CAAC,GAAW,EAAE,IAAY;IAC7C,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;QAClB,MAAM,IAAI,aAAa,CAAC,GAAG,IAAI,oBAAoB,GAAG,EAAE,CAAC,CAAC;IAC5D,CAAC;IACD,OAAO,MAAM,CAAC,GAAG,CAAC,CAAC;AACrB,CAAC;AAED,SAAS,OAAO,CAAC,GAAW;IAC1B,OAAO,gBAAgB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AACpC,CAAC"}
|
|
@@ -0,0 +1,47 @@
|
|
|
1
|
+
import { type DownloadItem, type PreparedInput } from "./bio.js";
|
|
2
|
+
import type { ToolRunFlags } from "./flags.js";
|
|
3
|
+
import { type UploadField } from "./inputs.js";
|
|
4
|
+
import { type JsonObject } from "./json.js";
|
|
5
|
+
type InputMode = "demo" | "upload" | "record" | "cloud" | "none";
|
|
6
|
+
export interface PreparedRun {
|
|
7
|
+
agent: string;
|
|
8
|
+
argsMain: JsonObject;
|
|
9
|
+
argsSpecific: JsonObject;
|
|
10
|
+
argsSpecificSchema: unknown[];
|
|
11
|
+
duid: string;
|
|
12
|
+
input: PreparedInput;
|
|
13
|
+
inputMode: InputMode;
|
|
14
|
+
inputSummary: JsonObject;
|
|
15
|
+
moduleId: string;
|
|
16
|
+
notice: string;
|
|
17
|
+
route: string;
|
|
18
|
+
schema: unknown[];
|
|
19
|
+
toolProductUuid: string;
|
|
20
|
+
uuid: string;
|
|
21
|
+
}
|
|
22
|
+
export declare function prepareTool(tool: string | undefined, flags: ToolRunFlags): Promise<PreparedRun>;
|
|
23
|
+
export declare function preparedPayload(run: PreparedRun): Record<string, unknown>;
|
|
24
|
+
export declare function executeTool(tool: string | undefined, flags: ToolRunFlags): Promise<Record<string, unknown>>;
|
|
25
|
+
export declare function historyHint(history: Record<string, unknown> | null): string;
|
|
26
|
+
export declare function downloadResult(input: {
|
|
27
|
+
moduleId: string;
|
|
28
|
+
uuid: string;
|
|
29
|
+
downloads: DownloadItem[];
|
|
30
|
+
file?: string;
|
|
31
|
+
downloadPath?: string;
|
|
32
|
+
downloadItem?: number;
|
|
33
|
+
downloadLabel?: string;
|
|
34
|
+
}): Promise<string[]>;
|
|
35
|
+
export declare function pickDownloadItem(items: DownloadItem[], options: {
|
|
36
|
+
item?: number;
|
|
37
|
+
label?: string;
|
|
38
|
+
outputPath?: string;
|
|
39
|
+
device?: string;
|
|
40
|
+
}): DownloadItem | undefined;
|
|
41
|
+
export declare function resolveUploadInputs(files: string[], fields: UploadField[], moduleId: string): Array<{
|
|
42
|
+
filePath: string;
|
|
43
|
+
key: string;
|
|
44
|
+
label: string;
|
|
45
|
+
}>;
|
|
46
|
+
export {};
|
|
47
|
+
//# sourceMappingURL=prepare.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"prepare.d.ts","sourceRoot":"","sources":["../../../src/modules/analysis/prepare.ts"],"names":[],"mappings":"AAQA,OAAO,EAcL,KAAK,YAAY,EAEjB,KAAK,aAAa,EAGnB,MAAM,UAAU,CAAC;AAGlB,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAC/C,OAAO,EAML,KAAK,WAAW,EACjB,MAAM,aAAa,CAAC;AACrB,OAAO,EAA6C,KAAK,UAAU,EAAE,MAAM,WAAW,CAAC;AAKvF,KAAK,SAAS,GAAG,MAAM,GAAG,QAAQ,GAAG,QAAQ,GAAG,OAAO,GAAG,MAAM,CAAC;AAejE,MAAM,WAAW,WAAW;IAC1B,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,UAAU,CAAC;IACrB,YAAY,EAAE,UAAU,CAAC;IACzB,kBAAkB,EAAE,OAAO,EAAE,CAAC;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,aAAa,CAAC;IACrB,SAAS,EAAE,SAAS,CAAC;IACrB,YAAY,EAAE,UAAU,CAAC;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,OAAO,EAAE,CAAC;IAClB,eAAe,EAAE,MAAM,CAAC;IACxB,IAAI,EAAE,MAAM,CAAC;CACd;AAED,wBAAsB,WAAW,CAC/B,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,KAAK,EAAE,YAAY,GAClB,OAAO,CAAC,WAAW,CAAC,CA+DtB;AAED,wBAAgB,eAAe,CAAC,GAAG,EAAE,WAAW,GAAG,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAkBzE;AAED,wBAAsB,WAAW,CAC/B,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,KAAK,EAAE,YAAY,GAClB,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CA2BlC;AA2HD,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAI,GAAG,MAAM,CAK3E;AAED,wBAAsB,cAAc,CAAC,KAAK,EAAE;IAC1C,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,YAAY,EAAE,CAAC;IAC1B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAqBpB;AAED,wBAAgB,gBAAgB,CAC9B,KAAK,EAAE,YAAY,EAAE,EACrB,OAAO,EAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,UAAU,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAE,GAC/E,YAAY,GAAG,SAAS,CAqB1B;AA0KD,wBAAgB,mBAAmB,CACjC,KAAK,EAAE,MAAM,EAAE,EACf,MAAM,EAAE,WAAW,EAAE,EACrB,QAAQ,EAAE,MAAM,GACf,KAAK,CAAC;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAwDzD"}
|