hebbian 0.3.0 → 0.3.2

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Files changed (6) hide show
  1. package/dist/bin/hebbian.js +20 -5
  2. package/dist/bin/hebbian.js.map +1 -1
  3. package/dist/hooks.d.ts.map +1 -1
  4. package/dist/index.js +14 -2
  5. package/dist/index.js.map +1 -1
  6. package/package.json +1 -1
package/dist/bin/hebbian.js.map CHANGED
@@ -1 +1 @@
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- {"version":3,"sources":["../../src/constants.ts","../../src/init.ts","../../src/scanner.ts","../../src/subsumption.ts","../../src/emit.ts","../../src/fire.ts","../../src/similarity.ts","../../src/grow.ts","../../src/rollback.ts","../../src/signal.ts","../../src/decay.ts","../../src/dedup.ts","../../src/snapshot.ts","../../src/watch.ts","../../src/episode.ts","../../src/inbox.ts","../../src/api.ts","../../src/hooks.ts","../../src/digest.ts","../../src/cli.ts"],"sourcesContent":["// hebbian — Constants & Configuration\n//\n// AXIOMS:\n// 1. Folder = Neuron (name is meaning, depth is specificity)\n// 2. File = Firing Trace (N.neuron = counter, dopamineN = reward, bomb = pain)\n// 3. Path = Sentence (brain/cortex/quality/no_hardcoded → \"cortex > quality > no_hardcoded\")\n// 4. Counter = Activation (higher = stronger/myelinated path)\n// 5. AI writes back (counter increment = experience growth)\n\nexport const REGIONS = [\n\t'brainstem',\n\t'limbic',\n\t'hippocampus',\n\t'sensors',\n\t'cortex',\n\t'ego',\n\t'prefrontal',\n] as const;\n\nexport type RegionName = (typeof REGIONS)[number];\n\nexport const REGION_PRIORITY: Record<RegionName, number> = {\n\tbrainstem: 0,\n\tlimbic: 1,\n\thippocampus: 2,\n\tsensors: 3,\n\tcortex: 4,\n\tego: 5,\n\tprefrontal: 6,\n};\n\nexport const REGION_ICONS: Record<RegionName, string> = {\n\tbrainstem: '🛡️',\n\tlimbic: '💓',\n\thippocampus: '📝',\n\tsensors: '👁️',\n\tcortex: '🧠',\n\tego: '🎭',\n\tprefrontal: '🎯',\n};\n\nexport const REGION_KO: Record<RegionName, string> = {\n\tbrainstem: '양심/본능',\n\tlimbic: '감정 필터',\n\thippocampus: '기록/기억',\n\tsensors: '환경 제약',\n\tcortex: '지식/기술',\n\tego: '성향/톤',\n\tprefrontal: '목표/계획',\n};\n\nexport const EMIT_THRESHOLD = 5;\nexport const SPOTLIGHT_DAYS = 7;\nexport const JACCARD_THRESHOLD = 0.6;\nexport const DECAY_DAYS = 30;\nexport const MAX_DEPTH = 6;\n\nexport const EMIT_TARGETS: Record<string, string> = {\n\tgemini: '.gemini/GEMINI.md',\n\tcursor: '.cursorrules',\n\tclaude: 'CLAUDE.md',\n\tcopilot: '.github/copilot-instructions.md',\n\tgeneric: '.neuronrc',\n};\n\nexport const SIGNAL_TYPES = ['dopamine', 'bomb', 'memory'] as const;\nexport type SignalType = (typeof SIGNAL_TYPES)[number];\n\nexport const MARKER_START = '<!-- HEBBIAN:START -->';\nexport const MARKER_END = '<!-- HEBBIAN:END -->';\n\n// Hook ownership marker — used to identify hebbian-managed hooks in settings.local.json\nexport const HOOK_MARKER = '[hebbian]';\n\n// Digest constants\nexport const MAX_CORRECTIONS_PER_SESSION = 10;\nexport const MIN_CORRECTION_LENGTH = 15;\nexport const DIGEST_LOG_DIR = 'hippocampus/digest_log';\n\nimport { resolve } from 'node:path';\nimport { existsSync } from 'node:fs';\n\n/** Resolve brain root path from flag, env var, or defaults */\nexport function resolveBrainRoot(brainFlag?: string): string {\n\tif (brainFlag) return resolve(brainFlag);\n\tif (process.env.HEBBIAN_BRAIN) return resolve(process.env.HEBBIAN_BRAIN);\n\tif (existsSync(resolve('./brain'))) return resolve('./brain');\n\treturn resolve(process.env.HOME || '~', 'hebbian', 'brain');\n}\n","// hebbian — Brain Initialization\n//\n// Creates a brain directory with 7 canonical regions and starter neurons.\n// Each region gets a _rules.md explaining its purpose.\n\nimport { mkdirSync, writeFileSync, existsSync, readdirSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { REGIONS, REGION_ICONS, REGION_KO } from './constants';\nimport type { RegionName } from './constants';\n\ninterface RegionTemplate {\n\tdescription: string;\n\tstarters: string[];\n}\n\nconst REGION_TEMPLATES: Record<RegionName, RegionTemplate> = {\n\tbrainstem: {\n\t\tdescription: 'Absolute principles. Immutable. Read-only conscience.\\nP0 — highest priority. bomb here halts EVERYTHING.',\n\t\tstarters: ['NO_fallback', 'DO_execute_not_debate'],\n\t},\n\tlimbic: {\n\t\tdescription: 'Emotional filters and somatic markers.\\nP1 — automatic, influences downstream regions.',\n\t\tstarters: [],\n\t},\n\thippocampus: {\n\t\tdescription: 'Memory and episode recording.\\nP2 — accumulated experience, session logs.',\n\t\tstarters: [],\n\t},\n\tsensors: {\n\t\tdescription: 'Environment constraints and input validation.\\nP3 — read-only, set by environment.',\n\t\tstarters: [],\n\t},\n\tcortex: {\n\t\tdescription: 'Knowledge and skills. The largest region.\\nP4 — learnable, grows with corrections.',\n\t\tstarters: [],\n\t},\n\tego: {\n\t\tdescription: 'Personality, tone, and communication style.\\nP5 — set by user preference.',\n\t\tstarters: [],\n\t},\n\tprefrontal: {\n\t\tdescription: 'Goals, projects, and planning.\\nP6 — lowest priority, longest time horizon.',\n\t\tstarters: [],\n\t},\n};\n\n/**\n * Initialize a new brain directory with 7 regions.\n */\nexport function initBrain(brainPath: string): void {\n\tif (existsSync(brainPath)) {\n\t\tconst entries = readdirSync(brainPath);\n\t\tif (entries.some((e) => (REGIONS as readonly string[]).includes(e))) {\n\t\t\tconsole.log(`\\u{26A0}\\uFE0F Brain already exists at ${brainPath}`);\n\t\t\treturn;\n\t\t}\n\t}\n\n\tmkdirSync(brainPath, { recursive: true });\n\n\tfor (const regionName of REGIONS) {\n\t\tconst regionDir = join(brainPath, regionName);\n\t\tmkdirSync(regionDir, { recursive: true });\n\n\t\tconst template = REGION_TEMPLATES[regionName];\n\t\tconst icon = REGION_ICONS[regionName];\n\t\tconst ko = REGION_KO[regionName];\n\n\t\t// Write _rules.md template\n\t\twriteFileSync(\n\t\t\tjoin(regionDir, '_rules.md'),\n\t\t\t`# ${icon} ${regionName} (${ko})\\n\\n${template.description}\\n`,\n\t\t\t'utf8',\n\t\t);\n\n\t\t// Create starter neurons\n\t\tfor (const starter of template.starters) {\n\t\t\tconst neuronDir = join(regionDir, starter);\n\t\t\tmkdirSync(neuronDir, { recursive: true });\n\t\t\twriteFileSync(join(neuronDir, '1.neuron'), '', 'utf8');\n\t\t}\n\t}\n\n\t// Create _agents inbox\n\tmkdirSync(join(brainPath, '_agents', 'global_inbox'), { recursive: true });\n\n\tconsole.log(`\\u{1F9E0} Brain initialized at ${brainPath}`);\n\tconsole.log(` 7 regions created: ${REGIONS.join(', ')}`);\n\tconsole.log('');\n\tconsole.log(' Next steps:');\n\tconsole.log(` hebbian grow brainstem/NO_your_rule --brain ${brainPath}`);\n\tconsole.log(` hebbian emit claude --brain ${brainPath}`);\n}\n","// hebbian — Brain Filesystem Scanner\n//\n// Walks the brain directory tree and builds a structured representation.\n// Folders = neurons. Files = firing traces. Paths = sentences.\n//\n// Scan order follows subsumption priority (P0 brainstem → P6 prefrontal).\n// Only recognizes the 7 canonical region names at the top level.\n\nimport { readdirSync, statSync, readFileSync, existsSync } from 'node:fs';\nimport { join, relative, sep } from 'node:path';\nimport { REGIONS, REGION_PRIORITY, MAX_DEPTH } from './constants';\nimport type { Neuron, Region, Brain } from './types';\n\n/**\n * Scan a brain directory and return all regions with their neurons.\n */\nexport function scanBrain(brainRoot: string): Brain {\n\tconst regions: Region[] = [];\n\n\tfor (const regionName of REGIONS) {\n\t\tconst regionPath = join(brainRoot, regionName);\n\t\tif (!existsSync(regionPath)) {\n\t\t\tregions.push({\n\t\t\t\tname: regionName,\n\t\t\t\tpriority: REGION_PRIORITY[regionName],\n\t\t\t\tpath: regionPath,\n\t\t\t\tneurons: [],\n\t\t\t\taxons: [],\n\t\t\t\thasBomb: false,\n\t\t\t});\n\t\t\tcontinue;\n\t\t}\n\n\t\tconst neurons = walkRegion(regionPath, regionPath, 0);\n\t\tconst axons = readAxons(regionPath);\n\t\tconst hasBomb = neurons.some((n) => n.hasBomb);\n\n\t\tregions.push({\n\t\t\tname: regionName,\n\t\t\tpriority: REGION_PRIORITY[regionName],\n\t\t\tpath: regionPath,\n\t\t\tneurons,\n\t\t\taxons,\n\t\t\thasBomb,\n\t\t});\n\t}\n\n\treturn { root: brainRoot, regions };\n}\n\n/**\n * Recursively walk a region directory and collect neurons.\n * A neuron is any directory that contains at least one trace file\n * (*.neuron, *.contra, *.dormant, bomb.neuron).\n */\nfunction walkRegion(dir: string, regionRoot: string, depth: number): Neuron[] {\n\tif (depth > MAX_DEPTH) return [];\n\n\tconst neurons: Neuron[] = [];\n\tlet entries;\n\n\ttry {\n\t\tentries = readdirSync(dir, { withFileTypes: true });\n\t} catch {\n\t\treturn [];\n\t}\n\n\t// Parse trace files in this directory\n\tlet counter = 0;\n\tlet contra = 0;\n\tlet dopamine = 0;\n\tlet hasBomb = false;\n\tlet hasMemory = false;\n\tlet isDormant = false;\n\tlet modTime = new Date(0);\n\tlet hasTraceFile = false;\n\n\tfor (const entry of entries) {\n\t\tif (entry.name.startsWith('_')) continue;\n\n\t\tif (entry.isFile()) {\n\t\t\tconst name = entry.name;\n\n\t\t\t// N.neuron — excitatory counter\n\t\t\tif (name.endsWith('.neuron') && !name.startsWith('dopamine') && !name.startsWith('memory') && name !== 'bomb.neuron') {\n\t\t\t\tconst n = parseInt(name, 10);\n\t\t\t\tif (!isNaN(n) && n > counter) {\n\t\t\t\t\tcounter = n;\n\t\t\t\t\thasTraceFile = true;\n\t\t\t\t\ttry {\n\t\t\t\t\t\tconst st = statSync(join(dir, name));\n\t\t\t\t\t\tif (st.mtime > modTime) modTime = st.mtime;\n\t\t\t\t\t} catch {}\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// N.contra — inhibitory counter\n\t\t\tif (name.endsWith('.contra')) {\n\t\t\t\tconst n = parseInt(name, 10);\n\t\t\t\tif (!isNaN(n) && n > contra) {\n\t\t\t\t\tcontra = n;\n\t\t\t\t\thasTraceFile = true;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// dopamineN.neuron — reward signal\n\t\t\tif (name.startsWith('dopamine') && name.endsWith('.neuron')) {\n\t\t\t\tconst n = parseInt(name.replace('dopamine', ''), 10);\n\t\t\t\tif (!isNaN(n) && n > dopamine) {\n\t\t\t\t\tdopamine = n;\n\t\t\t\t\thasTraceFile = true;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// bomb.neuron — circuit breaker\n\t\t\tif (name === 'bomb.neuron') {\n\t\t\t\thasBomb = true;\n\t\t\t\thasTraceFile = true;\n\t\t\t}\n\n\t\t\t// memoryN.neuron — memory signal\n\t\t\tif (name.startsWith('memory') && name.endsWith('.neuron')) {\n\t\t\t\thasMemory = true;\n\t\t\t\thasTraceFile = true;\n\t\t\t}\n\n\t\t\t// *.dormant — dormancy marker\n\t\t\tif (name.endsWith('.dormant')) {\n\t\t\t\tisDormant = true;\n\t\t\t\thasTraceFile = true;\n\t\t\t}\n\t\t}\n\t}\n\n\t// If this directory has trace files, it's a neuron\n\tif (hasTraceFile) {\n\t\tconst relPath = relative(regionRoot, dir) || '.';\n\t\tconst folderName = dir.split(sep).pop() || '';\n\t\tconst total = counter + contra + dopamine;\n\t\tconst intensity = counter - contra + dopamine;\n\t\tconst polarity = total > 0 ? intensity / total : 0;\n\n\t\tneurons.push({\n\t\t\tname: folderName,\n\t\t\tpath: relPath,\n\t\t\tfullPath: dir,\n\t\t\tcounter,\n\t\t\tcontra,\n\t\t\tdopamine,\n\t\t\tintensity,\n\t\t\tpolarity: Math.round(polarity * 100) / 100,\n\t\t\thasBomb,\n\t\t\thasMemory,\n\t\t\tisDormant,\n\t\t\tdepth,\n\t\t\tmodTime,\n\t\t});\n\t}\n\n\t// Recurse into subdirectories\n\tfor (const entry of entries) {\n\t\tif (entry.name.startsWith('_') || entry.name.startsWith('.')) continue;\n\t\tif (entry.isDirectory()) {\n\t\t\tconst subNeurons = walkRegion(join(dir, entry.name), regionRoot, depth + 1);\n\t\t\tneurons.push(...subNeurons);\n\t\t}\n\t}\n\n\treturn neurons;\n}\n\n/**\n * Read .axon file from a region directory.\n */\nfunction readAxons(regionPath: string): string[] {\n\tconst axonPath = join(regionPath, '.axon');\n\tif (!existsSync(axonPath)) return [];\n\ttry {\n\t\tconst content = readFileSync(axonPath, 'utf8').trim();\n\t\treturn content.split(/[\\n,]+/).map((s: string) => s.trim()).filter(Boolean);\n\t} catch {\n\t\treturn [];\n\t}\n}\n","// hebbian — Subsumption Cascade Engine\n//\n// Implements Brooks' subsumption architecture:\n// - Lower priority (P0) always suppresses higher priority (P6)\n// - bomb.neuron in any region halts all downstream regions\n// - Dormant neurons are excluded from activation counts\n//\n// Cascade flow:\n// P0 brainstem → P1 limbic → P2 hippocampus → P3 sensors → P4 cortex → P5 ego → P6 prefrontal\n// If bomb at P(n), all P(n+1)→P6 are BLOCKED.\n\nimport type { Brain, Region, SubsumptionResult } from './types';\n\n/**\n * Run the subsumption cascade on a scanned brain.\n */\nexport function runSubsumption(brain: Brain): SubsumptionResult {\n\tconst activeRegions: Region[] = [];\n\tconst blockedRegions: Region[] = [];\n\tlet bombSource = '';\n\tlet firedNeurons = 0;\n\tlet totalNeurons = 0;\n\tlet totalCounter = 0;\n\tlet blocked = false;\n\n\tfor (const region of brain.regions) {\n\t\ttotalNeurons += region.neurons.length;\n\n\t\tif (blocked) {\n\t\t\tblockedRegions.push(region);\n\t\t\tcontinue;\n\t\t}\n\n\t\tif (region.hasBomb) {\n\t\t\tbombSource = region.name;\n\t\t\tblockedRegions.push(region);\n\t\t\tblocked = true;\n\t\t\tcontinue;\n\t\t}\n\n\t\tactiveRegions.push(region);\n\n\t\tfor (const neuron of region.neurons) {\n\t\t\tif (!neuron.isDormant) {\n\t\t\t\tfiredNeurons++;\n\t\t\t\ttotalCounter += neuron.counter;\n\t\t\t}\n\t\t}\n\t}\n\n\treturn {\n\t\tactiveRegions,\n\t\tblockedRegions,\n\t\tbombSource,\n\t\tfiredNeurons,\n\t\ttotalNeurons,\n\t\ttotalCounter,\n\t};\n}\n","// hebbian — 3-Tier Emit System + Multi-Target Output\n//\n// Tier 1: Bootstrap (~500 tokens) — auto-loaded by AI (CLAUDE.md, .cursorrules, etc.)\n// Tier 2: _index.md — brain overview (AI reads at conversation start)\n// Tier 3: {region}/_rules.md — per-region detail (AI reads on demand)\n//\n// Multi-target: claude, cursor, gemini, copilot, generic, all\n\nimport { existsSync, readFileSync, writeFileSync, mkdirSync } from 'node:fs';\nimport { join, dirname } from 'node:path';\nimport { scanBrain } from './scanner';\nimport { runSubsumption } from './subsumption';\nimport {\n\tREGIONS, REGION_ICONS, REGION_KO, EMIT_TARGETS,\n\tEMIT_THRESHOLD, SPOTLIGHT_DAYS, MARKER_START, MARKER_END,\n} from './constants';\nimport type { RegionName } from './constants';\nimport type { Neuron, Region, Brain, SubsumptionResult } from './types';\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// TIER 1: Bootstrap (~500 tokens)\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Generate Tier 1 bootstrap content.\n */\nexport function emitBootstrap(result: SubsumptionResult, brain: Brain): string {\n\tconst lines: string[] = [];\n\tconst now = new Date().toISOString().replace(/\\.\\d+Z$/, '');\n\n\tlines.push(MARKER_START);\n\tlines.push(`<!-- Generated: ${now} -->`);\n\tlines.push('<!-- Axiom: Folder=Neuron | File=Trace | Path=Sentence -->');\n\tlines.push(`<!-- Active: ${result.firedNeurons}/${result.totalNeurons} neurons | Total activation: ${result.totalCounter} -->`);\n\tlines.push('');\n\n\t// Circuit breaker\n\tif (result.bombSource) {\n\t\tlines.push(`## \\u{1F6A8} CIRCUIT BREAKER: ${result.bombSource}`);\n\t\tlines.push('**ALL OPERATIONS HALTED. REPAIR REQUIRED.**');\n\t\tlines.push('');\n\t\tlines.push(MARKER_END);\n\t\treturn lines.join('\\n');\n\t}\n\n\tlines.push('## hebbian Active Rules');\n\tlines.push('');\n\n\t// Persona (ego region)\n\tlines.push(`### ${REGION_ICONS.ego} Persona`);\n\tfor (const region of result.activeRegions) {\n\t\tif (region.name === 'ego') {\n\t\t\tconst top = sortedActive(region.neurons, 10);\n\t\t\tfor (const n of top) {\n\t\t\t\tlines.push(`- ${pathToSentence(n.path)}`);\n\t\t\t}\n\t\t\tbreak;\n\t\t}\n\t}\n\tlines.push('');\n\n\t// Subsumption cascade\n\tlines.push('### \\u{1F517} Subsumption Cascade');\n\tlines.push('```');\n\tlines.push('brainstem \\u2190\\u2192 limbic \\u2190\\u2192 hippocampus \\u2190\\u2192 sensors \\u2190\\u2192 cortex \\u2190\\u2192 ego \\u2190\\u2192 prefrontal');\n\tlines.push(' (P0) (P1) (P2) (P3) (P4) (P5) (P6)');\n\tlines.push('```');\n\tlines.push('Lower P always overrides higher P. bomb = full stop.');\n\tlines.push('');\n\n\t// TOP 5 brainstem rules\n\tlines.push(`### ${REGION_ICONS.brainstem} Core Directives TOP 5`);\n\tfor (const region of result.activeRegions) {\n\t\tif (region.name === 'brainstem') {\n\t\t\tconst top = sortedActive(region.neurons, 5);\n\t\t\ttop.forEach((n, i) => {\n\t\t\t\tlines.push(`${i + 1}. **${pathToSentence(n.path)}**`);\n\t\t\t});\n\t\t\tbreak;\n\t\t}\n\t}\n\tlines.push('');\n\n\t// Active regions summary\n\tlines.push('### Active Regions');\n\tlines.push('| Region | Neurons | Activation |');\n\tlines.push('|--------|---------|------------|');\n\tfor (const region of result.activeRegions) {\n\t\tconst active = region.neurons.filter((n) => !n.isDormant);\n\t\tconst activation = active.reduce((sum, n) => sum + n.counter, 0);\n\t\tconst icon = REGION_ICONS[region.name as RegionName] || '';\n\t\tlines.push(`| ${icon} ${region.name} | ${active.length} | ${activation} |`);\n\t}\n\tlines.push('');\n\tlines.push(MARKER_END);\n\n\treturn lines.join('\\n');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// TIER 2: Index (_index.md)\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Generate Tier 2 brain index content.\n */\nexport function emitIndex(result: SubsumptionResult, brain: Brain): string {\n\tconst lines: string[] = [];\n\tlines.push('# hebbian Brain Index');\n\tlines.push('');\n\tlines.push(`> ${result.firedNeurons} active / ${result.totalNeurons} total neurons | activation: ${result.totalCounter}`);\n\tlines.push('');\n\n\tif (result.bombSource) {\n\t\tlines.push(`## \\u{1F6A8} CIRCUIT BREAKER: ${result.bombSource}`);\n\t\tlines.push('');\n\t\treturn lines.join('\\n');\n\t}\n\n\t// Top 10 neurons by counter\n\tconst allNeurons = result.activeRegions.flatMap((r) =>\n\t\tr.neurons.filter((n) => !n.isDormant && n.counter >= EMIT_THRESHOLD),\n\t);\n\tallNeurons.sort((a, b) => b.counter - a.counter);\n\n\tlines.push('## Top 10 Active Neurons');\n\tlines.push('| # | Path | Counter | Strength |');\n\tlines.push('|---|------|---------|----------|');\n\tfor (const n of allNeurons.slice(0, 10)) {\n\t\tconst strength = n.counter >= 10 ? '\\u{1F534}' : n.counter >= 5 ? '\\u{1F7E1}' : '\\u26AA';\n\t\tlines.push(`| ${allNeurons.indexOf(n) + 1} | ${n.path} | ${n.counter} | ${strength} |`);\n\t}\n\tlines.push('');\n\n\t// Spotlight: new neurons (< SPOTLIGHT_DAYS old, counter < EMIT_THRESHOLD)\n\tconst cutoff = new Date(Date.now() - SPOTLIGHT_DAYS * 24 * 60 * 60 * 1000);\n\tconst spotlightNeurons = result.activeRegions.flatMap((r) =>\n\t\tr.neurons.filter((n) => !n.isDormant && n.counter < EMIT_THRESHOLD && n.modTime > cutoff),\n\t);\n\tif (spotlightNeurons.length > 0) {\n\t\tlines.push('## Spotlight (Probation)');\n\t\tfor (const n of spotlightNeurons) {\n\t\t\tlines.push(`- ${n.path} (${n.counter}) — new`);\n\t\t}\n\t\tlines.push('');\n\t}\n\n\t// Per-region summary\n\tlines.push('## Regions');\n\tlines.push('| Region | Active | Dormant | Activation | Rules |');\n\tlines.push('|--------|--------|---------|------------|-------|');\n\tfor (const region of result.activeRegions) {\n\t\tconst active = region.neurons.filter((n) => !n.isDormant);\n\t\tconst dormant = region.neurons.filter((n) => n.isDormant);\n\t\tconst activation = active.reduce((sum, n) => sum + n.counter, 0);\n\t\tconst icon = REGION_ICONS[region.name as RegionName] || '';\n\t\tlines.push(`| ${icon} ${region.name} | ${active.length} | ${dormant.length} | ${activation} | [_rules.md](${region.name}/_rules.md) |`);\n\t}\n\tlines.push('');\n\n\treturn lines.join('\\n');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// TIER 3: Per-region rules ({region}/_rules.md)\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Generate Tier 3 per-region rules content.\n */\nexport function emitRegionRules(region: Region): string {\n\tconst icon = REGION_ICONS[region.name as RegionName] || '';\n\tconst ko = REGION_KO[region.name as RegionName] || '';\n\tconst active = region.neurons.filter((n) => !n.isDormant);\n\tconst dormant = region.neurons.filter((n) => n.isDormant);\n\tconst activation = active.reduce((sum, n) => sum + n.counter, 0);\n\n\tconst lines: string[] = [];\n\tlines.push(`# ${icon} ${region.name} (${ko})`);\n\tlines.push(`> Active: ${active.length} | Dormant: ${dormant.length} | Activation: ${activation}`);\n\tlines.push('');\n\n\t// Axons\n\tif (region.axons.length > 0) {\n\t\tlines.push('## Connections');\n\t\tfor (const axon of region.axons) {\n\t\t\tlines.push(`- \\u2194 ${axon}`);\n\t\t}\n\t\tlines.push('');\n\t}\n\n\t// Neuron tree\n\tif (active.length > 0) {\n\t\tlines.push('## Rules');\n\t\tconst sorted = [...active].sort((a, b) => b.counter - a.counter);\n\t\tfor (const n of sorted) {\n\t\t\tconst indent = ' '.repeat(Math.min(n.depth, 4));\n\t\t\tconst prefix = strengthPrefix(n.counter);\n\t\t\tconst signals: string[] = [];\n\t\t\tif (n.dopamine > 0) signals.push(`\\u{1F7E2}+${n.dopamine}`);\n\t\t\tif (n.hasBomb) signals.push('\\u{1F4A3}');\n\t\t\tif (n.hasMemory) signals.push('\\u{1F4BE}');\n\t\t\tconst signalStr = signals.length > 0 ? ` ${signals.join(' ')}` : '';\n\t\t\tlines.push(`${indent}- ${prefix}${pathToSentence(n.path)} (${n.counter})${signalStr}`);\n\t\t}\n\t\tlines.push('');\n\t}\n\n\t// Dormant section\n\tif (dormant.length > 0) {\n\t\tlines.push('## Dormant');\n\t\tfor (const n of dormant) {\n\t\t\tlines.push(`- ~~${pathToSentence(n.path)} (${n.counter})~~`);\n\t\t}\n\t\tlines.push('');\n\t}\n\n\treturn lines.join('\\n');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// MULTI-TARGET OUTPUT\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Emit rules to a specific target or all targets.\n */\nexport function emitToTarget(brainRoot: string, target: string): void {\n\tconst brain = scanBrain(brainRoot);\n\tconst result = runSubsumption(brain);\n\tconst content = emitBootstrap(result, brain);\n\n\tif (target === 'all') {\n\t\tfor (const [name, filePath] of Object.entries(EMIT_TARGETS)) {\n\t\t\twriteTarget(filePath, content);\n\t\t\tconsole.log(`\\u{1F4E4} emitted: ${name} → ${filePath}`);\n\t\t}\n\t} else if (EMIT_TARGETS[target]) {\n\t\twriteTarget(EMIT_TARGETS[target], content);\n\t\tconsole.log(`\\u{1F4E4} emitted: ${target} → ${EMIT_TARGETS[target]}`);\n\t} else {\n\t\tthrow new Error(`Unknown target: ${target}. Valid: ${Object.keys(EMIT_TARGETS).join(', ')}, all`);\n\t}\n\n\t// Always write tier 2 + tier 3 into the brain\n\twriteAllTiers(brainRoot, result, brain);\n}\n\n/**\n * Write all 3 tiers into the brain directory.\n */\nexport function writeAllTiers(brainRoot: string, result: SubsumptionResult, brain: Brain): void {\n\t// Tier 2: _index.md\n\tconst indexContent = emitIndex(result, brain);\n\twriteFileSync(join(brainRoot, '_index.md'), indexContent, 'utf8');\n\n\t// Tier 3: per-region _rules.md\n\tfor (const region of result.activeRegions) {\n\t\tif (existsSync(region.path)) {\n\t\t\tconst rulesContent = emitRegionRules(region);\n\t\t\twriteFileSync(join(region.path, '_rules.md'), rulesContent, 'utf8');\n\t\t}\n\t}\n}\n\n/**\n * Write content to a target file, using marker-based injection if file already exists.\n */\nfunction writeTarget(filePath: string, content: string): void {\n\tconst dir = dirname(filePath);\n\tif (dir !== '.' && !existsSync(dir)) {\n\t\tmkdirSync(dir, { recursive: true });\n\t}\n\n\tif (existsSync(filePath)) {\n\t\t// Marker-based injection: replace between markers, preserve surrounding content\n\t\tconst existing = readFileSync(filePath, 'utf8');\n\t\tconst startIdx = existing.indexOf(MARKER_START);\n\t\tconst endIdx = existing.indexOf(MARKER_END);\n\n\t\tif (startIdx !== -1 && endIdx !== -1) {\n\t\t\tconst before = existing.slice(0, startIdx);\n\t\t\tconst after = existing.slice(endIdx + MARKER_END.length);\n\t\t\twriteFileSync(filePath, before + content + after, 'utf8');\n\t\t\treturn;\n\t\t}\n\t}\n\n\twriteFileSync(filePath, content, 'utf8');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// DIAGNOSTICS (for CLI `hebbian diag` / `hebbian stats`)\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Print brain diagnostics to stdout.\n */\nexport function printDiag(brain: Brain, result: SubsumptionResult): void {\n\tconsole.log('');\n\tconsole.log(`\\u{1F9E0} hebbian Brain Diagnostics`);\n\tconsole.log(` Root: ${brain.root}`);\n\tconsole.log(` Neurons: ${result.firedNeurons} active / ${result.totalNeurons} total`);\n\tconsole.log(` Activation: ${result.totalCounter}`);\n\tif (result.bombSource) {\n\t\tconsole.log(` \\u{1F4A3} BOMB: ${result.bombSource} — cascade halted!`);\n\t}\n\tconsole.log('');\n\n\tfor (const region of brain.regions) {\n\t\tconst icon = REGION_ICONS[region.name as RegionName] || '';\n\t\tconst active = region.neurons.filter((n) => !n.isDormant);\n\t\tconst dormant = region.neurons.filter((n) => n.isDormant);\n\t\tconst activation = active.reduce((sum, n) => sum + n.counter, 0);\n\t\tconst isBlocked = result.blockedRegions.some((r) => r.name === region.name);\n\t\tconst status = region.hasBomb ? '\\u{1F4A3} BOMB' : isBlocked ? '\\u{1F6AB} BLOCKED' : '\\u2705 ACTIVE';\n\n\t\tconsole.log(` ${icon} ${region.name} [${status}]`);\n\t\tconsole.log(` neurons: ${active.length} active, ${dormant.length} dormant | activation: ${activation}`);\n\n\t\tif (region.axons.length > 0) {\n\t\t\tconsole.log(` axons: ${region.axons.join(', ')}`);\n\t\t}\n\n\t\tconst top3 = sortedActive(region.neurons, 3);\n\t\tfor (const n of top3) {\n\t\t\tconsole.log(` \\u251C ${n.path} (${n.counter})`);\n\t\t}\n\t}\n\tconsole.log('');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// HELPERS\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/** Convert a neuron relative path to a human-readable sentence. */\nfunction pathToSentence(path: string): string {\n\treturn path.replace(/\\//g, ' > ').replace(/_/g, ' ');\n}\n\n/** Sort non-dormant neurons by counter (descending), take first N. */\nfunction sortedActive(neurons: Neuron[], n: number): Neuron[] {\n\treturn [...neurons]\n\t\t.filter((neuron) => !neuron.isDormant)\n\t\t.sort((a, b) => b.counter - a.counter)\n\t\t.slice(0, n);\n}\n\n/** Strength prefix based on counter value. */\nfunction strengthPrefix(counter: number): string {\n\tif (counter >= 10) return '**[ABSOLUTE]** ';\n\tif (counter >= 5) return '**[MUST]** ';\n\treturn '';\n}\n","// hebbian — Fire Neuron (increment counter)\n//\n// Firing = reinforcing a synaptic pathway.\n// The counter file is renamed: N.neuron → (N+1).neuron\n\nimport { readdirSync, renameSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';\nimport { join } from 'node:path';\n\n/**\n * Increment a neuron's counter by 1.\n * If the neuron doesn't exist, auto-grows it with counter=1.\n */\nexport function fireNeuron(brainRoot: string, neuronPath: string): number {\n\tconst fullPath = join(brainRoot, neuronPath);\n\n\t// Auto-grow if neuron doesn't exist\n\tif (!existsSync(fullPath)) {\n\t\tmkdirSync(fullPath, { recursive: true });\n\t\twriteFileSync(join(fullPath, '1.neuron'), '', 'utf8');\n\t\tconsole.log(`\\u{1F331} grew + fired: ${neuronPath} (1)`);\n\t\treturn 1;\n\t}\n\n\t// Find current counter\n\tconst current = getCurrentCounter(fullPath);\n\tconst newCounter = current + 1;\n\n\t// Rename: N.neuron → (N+1).neuron\n\tif (current > 0) {\n\t\trenameSync(join(fullPath, `${current}.neuron`), join(fullPath, `${newCounter}.neuron`));\n\t} else {\n\t\twriteFileSync(join(fullPath, `${newCounter}.neuron`), '', 'utf8');\n\t}\n\n\tconsole.log(`\\u{1F525} fired: ${neuronPath} (${current} → ${newCounter})`);\n\treturn newCounter;\n}\n\n/**\n * Get current counter value from the highest N.neuron file.\n */\nexport function getCurrentCounter(dir: string): number {\n\tlet max = 0;\n\ttry {\n\t\tfor (const entry of readdirSync(dir)) {\n\t\t\tif (entry.endsWith('.neuron') && !entry.startsWith('dopamine') && !entry.startsWith('memory') && entry !== 'bomb.neuron') {\n\t\t\t\tconst n = parseInt(entry, 10);\n\t\t\t\tif (!isNaN(n) && n > max) max = n;\n\t\t\t}\n\t\t}\n\t} catch {}\n\treturn max;\n}\n","// hebbian — Tokenizer, Stemmer, Jaccard Similarity\n//\n// Used by growNeuron() to detect similar existing neurons and merge\n// instead of duplicating. Implements synaptic consolidation.\n//\n// \"Neurons that fire together, wire together.\" — if two folder names\n// express the same concept, fire the existing one instead of creating a duplicate.\n\n/**\n * Tokenize a neuron name into stemmed words.\n * Splits on underscores, hyphens, spaces, and CamelCase boundaries.\n */\nexport function tokenize(name: string): string[] {\n\treturn name\n\t\t.replace(/([a-z])([A-Z])/g, '$1_$2') // camelCase → snake\n\t\t.replace(/[_\\-\\s]+/g, ' ') // normalize separators\n\t\t.toLowerCase()\n\t\t.split(' ')\n\t\t.map(stem)\n\t\t.filter((t) => t.length > 1); // drop single chars\n}\n\n/**\n * Simple suffix stemmer — removes common English suffixes.\n * Not a full Porter stemmer, but sufficient for Jaccard comparison.\n */\nexport function stem(word: string): string {\n\tconst suffixes = ['ing', 'tion', 'sion', 'ness', 'ment', 'able', 'ible', 'ful', 'less', 'ous', 'ive', 'ity', 'ies', 'ed', 'er', 'es', 'ly', 'al', 'en'];\n\tfor (const suffix of suffixes) {\n\t\tif (word.length > suffix.length + 2 && word.endsWith(suffix)) {\n\t\t\treturn word.slice(0, -suffix.length);\n\t\t}\n\t}\n\treturn word;\n}\n\n/**\n * Compute Jaccard similarity between two token sets.\n * |A ∩ B| / |A ∪ B|\n */\nexport function jaccardSimilarity(a: string[], b: string[]): number {\n\tif (a.length === 0 && b.length === 0) return 1.0;\n\tif (a.length === 0 || b.length === 0) return 0.0;\n\n\tconst setA = new Set(a);\n\tconst setB = new Set(b);\n\tlet intersection = 0;\n\n\tfor (const item of setA) {\n\t\tif (setB.has(item)) intersection++;\n\t}\n\n\tconst union = new Set([...setA, ...setB]).size;\n\treturn intersection / union;\n}\n","// hebbian — Grow Neuron (with synaptic consolidation)\n//\n// Creates a new neuron (folder + 1.neuron).\n// Before creating, checks for similar existing neurons via Jaccard similarity.\n// If a match is found (>= 0.6), fires the existing neuron instead.\n// This prevents duplication and strengthens existing pathways.\n//\n// \"Consolidation over duplication.\" — Hebb's principle.\n\nimport { mkdirSync, writeFileSync, existsSync, readdirSync } from 'node:fs';\nimport { join, relative } from 'node:path';\nimport { REGIONS, JACCARD_THRESHOLD } from './constants';\nimport { tokenize, jaccardSimilarity } from './similarity';\nimport { fireNeuron } from './fire';\n\nexport interface GrowResult {\n\taction: 'grew' | 'fired';\n\tpath: string;\n\tcounter: number;\n}\n\n/**\n * Grow a new neuron at the given path.\n * If a similar neuron already exists in the same region, fires it instead.\n */\nexport function growNeuron(brainRoot: string, neuronPath: string): GrowResult {\n\tconst fullPath = join(brainRoot, neuronPath);\n\n\t// If neuron already exists, just fire it\n\tif (existsSync(fullPath)) {\n\t\tconst counter = fireNeuron(brainRoot, neuronPath);\n\t\treturn { action: 'fired', path: neuronPath, counter };\n\t}\n\n\t// Extract region name and leaf name\n\tconst parts = neuronPath.split('/');\n\tconst regionName = parts[0]!;\n\tif (!(REGIONS as readonly string[]).includes(regionName)) {\n\t\tthrow new Error(`Invalid region: ${regionName}. Valid: ${REGIONS.join(', ')}`);\n\t}\n\n\tconst leafName = parts[parts.length - 1]!;\n\tconst newTokens = tokenize(leafName);\n\n\t// Search for similar neurons in the same region\n\tconst regionPath = join(brainRoot, regionName);\n\tif (existsSync(regionPath)) {\n\t\tconst match = findSimilar(regionPath, regionPath, newTokens);\n\t\tif (match) {\n\t\t\tconst matchRelPath = regionName + '/' + relative(regionPath, match);\n\t\t\tconsole.log(`\\u{1F504} consolidation: \"${neuronPath}\" ≈ \"${matchRelPath}\" (firing existing)`);\n\t\t\tconst counter = fireNeuron(brainRoot, matchRelPath);\n\t\t\treturn { action: 'fired', path: matchRelPath, counter };\n\t\t}\n\t}\n\n\t// No match — create new neuron\n\tmkdirSync(fullPath, { recursive: true });\n\twriteFileSync(join(fullPath, '1.neuron'), '', 'utf8');\n\tconsole.log(`\\u{1F331} grew: ${neuronPath} (1)`);\n\treturn { action: 'grew', path: neuronPath, counter: 1 };\n}\n\n/**\n * Walk a region and find a neuron whose name is similar to the given tokens.\n */\nfunction findSimilar(dir: string, regionRoot: string, targetTokens: string[]): string | null {\n\tlet entries;\n\ttry {\n\t\tentries = readdirSync(dir, { withFileTypes: true });\n\t} catch {\n\t\treturn null;\n\t}\n\n\t// Check if this directory has .neuron files (is a neuron)\n\tconst hasNeuron = entries.some((e) => e.isFile() && e.name.endsWith('.neuron'));\n\tif (hasNeuron) {\n\t\tconst folderName = dir.split('/').pop() || '';\n\t\tconst existingTokens = tokenize(folderName);\n\t\tconst similarity = jaccardSimilarity(targetTokens, existingTokens);\n\t\tif (similarity >= JACCARD_THRESHOLD) {\n\t\t\treturn dir;\n\t\t}\n\t}\n\n\t// Recurse into subdirectories\n\tfor (const entry of entries) {\n\t\tif (entry.name.startsWith('_') || entry.name.startsWith('.')) continue;\n\t\tif (entry.isDirectory()) {\n\t\t\tconst match = findSimilar(join(dir, entry.name), regionRoot, targetTokens);\n\t\t\tif (match) return match;\n\t\t}\n\t}\n\n\treturn null;\n}\n","// hebbian — Rollback Neuron (decrement counter)\n//\n// Undo a firing. Counter cannot go below 1 (minimum activation).\n\nimport { renameSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { getCurrentCounter } from './fire';\n\n/**\n * Decrement a neuron's counter by 1. Minimum counter is 1.\n */\nexport function rollbackNeuron(brainRoot: string, neuronPath: string): number {\n\tconst fullPath = join(brainRoot, neuronPath);\n\tconst current = getCurrentCounter(fullPath);\n\n\tif (current === 0) {\n\t\tthrow new Error(`Neuron not found: ${neuronPath}`);\n\t}\n\n\tif (current <= 1) {\n\t\tthrow new Error(`Counter already at minimum (1): ${neuronPath}`);\n\t}\n\n\tconst newCounter = current - 1;\n\trenameSync(join(fullPath, `${current}.neuron`), join(fullPath, `${newCounter}.neuron`));\n\n\tconsole.log(`\\u{23EA} rollback: ${neuronPath} (${current} → ${newCounter})`);\n\treturn newCounter;\n}\n","// hebbian — Signal Neuron (dopamine / bomb / memory)\n//\n// Signals are additional trace files placed in a neuron directory:\n// dopamineN.neuron — reward signal (positive reinforcement)\n// bomb.neuron — circuit breaker (halts downstream regions)\n// memoryN.neuron — memory marker (episodic recording)\n\nimport { writeFileSync, existsSync, readdirSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { SIGNAL_TYPES } from './constants';\nimport type { SignalType } from './constants';\n\n/**\n * Add a signal to a neuron.\n */\nexport function signalNeuron(brainRoot: string, neuronPath: string, signalType: SignalType): void {\n\tif (!SIGNAL_TYPES.includes(signalType)) {\n\t\tthrow new Error(`Invalid signal type: ${signalType}. Valid: ${SIGNAL_TYPES.join(', ')}`);\n\t}\n\n\tconst fullPath = join(brainRoot, neuronPath);\n\tif (!existsSync(fullPath)) {\n\t\tthrow new Error(`Neuron not found: ${neuronPath}`);\n\t}\n\n\tswitch (signalType) {\n\t\tcase 'bomb': {\n\t\t\twriteFileSync(join(fullPath, 'bomb.neuron'), '', 'utf8');\n\t\t\tconsole.log(`\\u{1F4A3} bomb planted: ${neuronPath}`);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'dopamine': {\n\t\t\tconst level = getNextSignalLevel(fullPath, 'dopamine');\n\t\t\twriteFileSync(join(fullPath, `dopamine${level}.neuron`), '', 'utf8');\n\t\t\tconsole.log(`\\u{1F7E2} dopamine +${level}: ${neuronPath}`);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'memory': {\n\t\t\tconst level = getNextSignalLevel(fullPath, 'memory');\n\t\t\twriteFileSync(join(fullPath, `memory${level}.neuron`), '', 'utf8');\n\t\t\tconsole.log(`\\u{1F4BE} memory +${level}: ${neuronPath}`);\n\t\t\tbreak;\n\t\t}\n\t}\n}\n\n/**\n * Get the next signal level (current max + 1).\n */\nfunction getNextSignalLevel(dir: string, prefix: string): number {\n\tlet max = 0;\n\ttry {\n\t\tfor (const entry of readdirSync(dir)) {\n\t\t\tif (entry.startsWith(prefix) && entry.endsWith('.neuron')) {\n\t\t\t\tconst n = parseInt(entry.replace(prefix, ''), 10);\n\t\t\t\tif (!isNaN(n) && n > max) max = n;\n\t\t\t}\n\t\t}\n\t} catch {}\n\treturn max + 1;\n}\n","// hebbian — Decay (dormancy sweep)\n//\n// Neurons that haven't been touched in N days are marked dormant.\n// Dormancy = *.dormant file in the neuron directory.\n// Dormant neurons are excluded from emission and activation counts.\n//\n// \"Most neurons die. Only the repeatedly fired ones survive.\" — Natural selection on OS.\n\nimport { readdirSync, statSync, writeFileSync, existsSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { REGIONS, MAX_DEPTH } from './constants';\n\nexport interface DecayResult {\n\tscanned: number;\n\tdecayed: number;\n}\n\n/**\n * Sweep the brain and mark inactive neurons as dormant.\n */\nexport function runDecay(brainRoot: string, days: number): DecayResult {\n\tconst threshold = Date.now() - days * 24 * 60 * 60 * 1000;\n\tlet scanned = 0;\n\tlet decayed = 0;\n\n\tfor (const regionName of REGIONS) {\n\t\tconst regionPath = join(brainRoot, regionName);\n\t\tif (!existsSync(regionPath)) continue;\n\t\tconst result = decayWalk(regionPath, threshold, 0);\n\t\tscanned += result.scanned;\n\t\tdecayed += result.decayed;\n\t}\n\n\tconsole.log(`\\u{1F4A4} decay: scanned ${scanned} neurons, decayed ${decayed} (>${days} days inactive)`);\n\treturn { scanned, decayed };\n}\n\nfunction decayWalk(dir: string, threshold: number, depth: number): DecayResult {\n\tif (depth > MAX_DEPTH) return { scanned: 0, decayed: 0 };\n\n\tlet scanned = 0;\n\tlet decayed = 0;\n\tlet entries;\n\n\ttry {\n\t\tentries = readdirSync(dir, { withFileTypes: true });\n\t} catch {\n\t\treturn { scanned: 0, decayed: 0 };\n\t}\n\n\t// Check if this directory is a neuron (has .neuron files)\n\tlet hasNeuronFile = false;\n\tlet isDormant = false;\n\tlet latestMod = 0;\n\n\tfor (const entry of entries) {\n\t\tif (entry.isFile()) {\n\t\t\tif (entry.name.endsWith('.neuron')) {\n\t\t\t\thasNeuronFile = true;\n\t\t\t\ttry {\n\t\t\t\t\tconst st = statSync(join(dir, entry.name));\n\t\t\t\t\tif (st.mtimeMs > latestMod) latestMod = st.mtimeMs;\n\t\t\t\t} catch {}\n\t\t\t}\n\t\t\tif (entry.name.endsWith('.dormant')) {\n\t\t\t\tisDormant = true;\n\t\t\t}\n\t\t}\n\t}\n\n\tif (hasNeuronFile) {\n\t\tscanned++;\n\t\tif (!isDormant && latestMod < threshold) {\n\t\t\tconst age = Math.floor((Date.now() - latestMod) / (24 * 60 * 60 * 1000));\n\t\t\twriteFileSync(\n\t\t\t\tjoin(dir, 'decay.dormant'),\n\t\t\t\t`Dormant since ${new Date().toISOString()} (${age} days inactive)`,\n\t\t\t\t'utf8',\n\t\t\t);\n\t\t\tdecayed++;\n\t\t}\n\t}\n\n\t// Recurse\n\tfor (const entry of entries) {\n\t\tif (entry.name.startsWith('_') || entry.name.startsWith('.')) continue;\n\t\tif (entry.isDirectory()) {\n\t\t\tconst sub = decayWalk(join(dir, entry.name), threshold, depth + 1);\n\t\t\tscanned += sub.scanned;\n\t\t\tdecayed += sub.decayed;\n\t\t}\n\t}\n\n\treturn { scanned, decayed };\n}\n","// hebbian — Batch Deduplication\n//\n// Scans all neurons in a region and merges duplicates via Jaccard similarity.\n// When a match is found (>= threshold), fires the higher-counter neuron\n// and marks the lower-counter one dormant.\n\nimport { writeFileSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { JACCARD_THRESHOLD } from './constants';\nimport { tokenize, jaccardSimilarity } from './similarity';\nimport { fireNeuron } from './fire';\nimport { scanBrain } from './scanner';\n\nexport interface DedupResult {\n\tscanned: number;\n\tmerged: number;\n}\n\n/**\n * Run batch deduplication across all regions.\n */\nexport function runDedup(brainRoot: string): DedupResult {\n\tconst brain = scanBrain(brainRoot);\n\tlet scanned = 0;\n\tlet merged = 0;\n\n\tfor (const region of brain.regions) {\n\t\tconst neurons = region.neurons.filter((n) => !n.isDormant);\n\t\tscanned += neurons.length;\n\n\t\t// O(n^2) pairwise comparison within each region\n\t\tconst consumed = new Set<number>();\n\t\tfor (let i = 0; i < neurons.length; i++) {\n\t\t\tif (consumed.has(i)) continue;\n\t\t\tconst ni = neurons[i]!;\n\t\t\tconst tokensI = tokenize(ni.name);\n\n\t\t\tfor (let j = i + 1; j < neurons.length; j++) {\n\t\t\t\tif (consumed.has(j)) continue;\n\t\t\t\tconst nj = neurons[j]!;\n\t\t\t\tconst tokensJ = tokenize(nj.name);\n\t\t\t\tconst sim = jaccardSimilarity(tokensI, tokensJ);\n\n\t\t\t\tif (sim >= JACCARD_THRESHOLD) {\n\t\t\t\t\t// Keep the one with higher counter, mark other dormant\n\t\t\t\t\tconst [keep, drop] = ni.counter >= nj.counter\n\t\t\t\t\t\t? [ni, nj] : [nj, ni];\n\n\t\t\t\t\t// Fire the keeper to absorb the dropped counter\n\t\t\t\t\tconst relKeep = `${region.name}/${keep.path}`;\n\t\t\t\t\tfireNeuron(brainRoot, relKeep);\n\n\t\t\t\t\t// Mark the dropped neuron dormant\n\t\t\t\t\twriteFileSync(\n\t\t\t\t\t\tjoin(drop.fullPath, 'dedup.dormant'),\n\t\t\t\t\t\t`Merged into ${keep.path} on ${new Date().toISOString()}`,\n\t\t\t\t\t\t'utf8',\n\t\t\t\t\t);\n\n\t\t\t\t\tconsumed.add(ni === drop ? i : j);\n\t\t\t\t\tmerged++;\n\t\t\t\t\tconsole.log(`\\u{1F500} merged: \"${drop.path}\" → \"${keep.path}\" (sim=${sim.toFixed(2)})`);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\tconsole.log(`\\u{1F9F9} dedup: scanned ${scanned} neurons, merged ${merged}`);\n\treturn { scanned, merged };\n}\n","// hebbian — Git Snapshot\n//\n// Creates a git commit of the current brain state for audit trail.\n// Only commits if there are changes.\n\nimport { execSync } from 'node:child_process';\nimport { existsSync } from 'node:fs';\nimport { join } from 'node:path';\n\n/**\n * Create a git snapshot of the brain directory.\n */\nexport function gitSnapshot(brainRoot: string): boolean {\n\t// Check if brain is inside a git repo\n\tif (!existsSync(join(brainRoot, '.git'))) {\n\t\t// Try parent directories\n\t\ttry {\n\t\t\texecSync('git rev-parse --is-inside-work-tree', { cwd: brainRoot, stdio: 'pipe' });\n\t\t} catch {\n\t\t\tconsole.log('\\u{26A0}\\uFE0F Not a git repository. Run `git init` in the brain directory first.');\n\t\t\treturn false;\n\t\t}\n\t}\n\n\ttry {\n\t\t// Check for changes\n\t\tconst status = execSync('git status --porcelain .', { cwd: brainRoot, encoding: 'utf8' });\n\t\tif (!status.trim()) {\n\t\t\tconsole.log('\\u{2705} No changes to snapshot.');\n\t\t\treturn false;\n\t\t}\n\n\t\t// Stage and commit\n\t\texecSync('git add .', { cwd: brainRoot, stdio: 'pipe' });\n\t\tconst ts = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 19);\n\t\texecSync(`git commit -m \"hebbian snapshot ${ts}\"`, { cwd: brainRoot, stdio: 'pipe' });\n\n\t\tconsole.log(`\\u{1F4F8} snapshot: committed brain state at ${ts}`);\n\t\treturn true;\n\t} catch (err: unknown) {\n\t\tconst message = err instanceof Error ? err.message : String(err);\n\t\tconsole.error(`\\u{274C} snapshot failed: ${message}`);\n\t\treturn false;\n\t}\n}\n","// hebbian — Watch Mode\n//\n// Watches the brain directory for filesystem changes and auto-recompiles\n// all tiers when changes are detected. Uses hash-based change detection\n// to avoid redundant writes.\n\nimport { watch } from 'node:fs';\nimport { scanBrain } from './scanner';\nimport { runSubsumption } from './subsumption';\nimport { writeAllTiers } from './emit';\nimport type { SubsumptionResult } from './types';\n\n/**\n * Start watching a brain directory for changes.\n * Auto-recompiles tiers when neurons are added/modified/removed.\n */\nexport async function startWatch(brainRoot: string): Promise<void> {\n\tlet lastHash = '';\n\tlet debounceTimer: ReturnType<typeof setTimeout> | null = null;\n\n\t/** Scan brain and recompile if state changed. */\n\tfunction recompile(): void {\n\t\tconst brain = scanBrain(brainRoot);\n\t\tconst result = runSubsumption(brain);\n\t\tconst hash = computeHash(result);\n\n\t\tif (hash === lastHash) return;\n\t\tlastHash = hash;\n\n\t\twriteAllTiers(brainRoot, result, brain);\n\t\tconst ts = new Date().toLocaleTimeString();\n\t\tconsole.log(`[${ts}] \\u{1F504} recompiled — ${result.firedNeurons} neurons, activation ${result.totalCounter}${result.bombSource ? ` \\u{1F4A3} BOMB: ${result.bombSource}` : ''}`);\n\t}\n\n\t// Initial compilation\n\trecompile();\n\tconsole.log(`\\u{1F440} watching: ${brainRoot}`);\n\tconsole.log(' Press Ctrl+C to stop.\\n');\n\n\t// Watch for filesystem changes\n\ttry {\n\t\tconst watcher = watch(brainRoot, { recursive: true }, (eventType, filename) => {\n\t\t\tif (!filename) return;\n\t\t\t// Ignore _index.md and _rules.md (our own output)\n\t\t\tif (filename.endsWith('_index.md') || filename.endsWith('_rules.md')) return;\n\t\t\t// Ignore hidden/internal\n\t\t\tif (filename.startsWith('.') || filename.includes('/_') || filename.includes('\\\\_')) return;\n\n\t\t\t// Debounce: wait 200ms after last change before recompiling\n\t\t\tif (debounceTimer) clearTimeout(debounceTimer);\n\t\t\tdebounceTimer = setTimeout(recompile, 200);\n\t\t});\n\n\t\t// Keep process alive\n\t\tawait new Promise<void>((resolve) => {\n\t\t\tprocess.on('SIGINT', () => {\n\t\t\t\twatcher.close();\n\t\t\t\tconsole.log('\\n\\u{1F44B} watch stopped.');\n\t\t\t\tresolve();\n\t\t\t});\n\t\t});\n\t} catch (err: unknown) {\n\t\tif (err && typeof err === 'object' && 'code' in err && err.code === 'ERR_FEATURE_UNAVAILABLE_ON_PLATFORM') {\n\t\t\tconsole.error('Recursive fs.watch not supported on this platform. Use Node.js >= 22.');\n\t\t} else {\n\t\t\tthrow err;\n\t\t}\n\t}\n}\n\n/**\n * Compute a simple hash from the subsumption result for change detection.\n */\nfunction computeHash(result: SubsumptionResult): string {\n\treturn `${result.firedNeurons}:${result.totalCounter}:${result.bombSource}:${result.activeRegions.length}`;\n}\n","// hebbian — Episode Logging (Circular Buffer)\n//\n// Writes events to hippocampus/session_log/ as memoryN.neuron files.\n// Circular buffer: max 100 entries. When full, overwrites oldest.\n//\n// Port from: NeuronFS/runtime/main.go lines 1300-1342\n\nimport { readdirSync, readFileSync, writeFileSync, mkdirSync, existsSync } from 'node:fs';\nimport { join } from 'node:path';\n\nconst MAX_EPISODES = 100;\nconst SESSION_LOG_DIR = 'hippocampus/session_log';\n\nexport interface Episode {\n\tts: string;\n\ttype: string;\n\tpath: string;\n\tdetail: string;\n}\n\n/**\n * Log an episode to the hippocampus session log.\n * Circular buffer — writes to memoryN.neuron, wraps at MAX_EPISODES.\n */\nexport function logEpisode(brainRoot: string, type: string, path: string, detail: string): void {\n\tconst logDir = join(brainRoot, SESSION_LOG_DIR);\n\tif (!existsSync(logDir)) {\n\t\tmkdirSync(logDir, { recursive: true });\n\t}\n\n\tconst nextSlot = getNextSlot(logDir);\n\tconst episode: Episode = {\n\t\tts: new Date().toISOString(),\n\t\ttype,\n\t\tpath,\n\t\tdetail,\n\t};\n\n\twriteFileSync(\n\t\tjoin(logDir, `memory${nextSlot}.neuron`),\n\t\tJSON.stringify(episode),\n\t\t'utf8',\n\t);\n}\n\n/**\n * Read all episodes from the session log, sorted by timestamp.\n */\nexport function readEpisodes(brainRoot: string): Episode[] {\n\tconst logDir = join(brainRoot, SESSION_LOG_DIR);\n\tif (!existsSync(logDir)) return [];\n\n\tconst episodes: Episode[] = [];\n\tlet entries;\n\ttry {\n\t\tentries = readdirSync(logDir);\n\t} catch {\n\t\treturn [];\n\t}\n\n\tfor (const entry of entries) {\n\t\tif (!entry.startsWith('memory') || !entry.endsWith('.neuron')) continue;\n\t\ttry {\n\t\t\tconst content = readFileSync(join(logDir, entry), 'utf8');\n\t\t\tif (content.trim()) {\n\t\t\t\tepisodes.push(JSON.parse(content) as Episode);\n\t\t\t}\n\t\t} catch {\n\t\t\t// skip malformed entries\n\t\t}\n\t}\n\n\tepisodes.sort((a, b) => a.ts.localeCompare(b.ts));\n\treturn episodes;\n}\n\n/**\n * Find the next circular buffer slot (1-based, wraps at MAX_EPISODES).\n */\nfunction getNextSlot(logDir: string): number {\n\tlet maxSlot = 0;\n\ttry {\n\t\tfor (const entry of readdirSync(logDir)) {\n\t\t\tif (entry.startsWith('memory') && entry.endsWith('.neuron')) {\n\t\t\t\tconst n = parseInt(entry.replace('memory', '').replace('.neuron', ''), 10);\n\t\t\t\tif (!isNaN(n) && n > maxSlot) maxSlot = n;\n\t\t\t}\n\t\t}\n\t} catch {}\n\n\tconst next = maxSlot + 1;\n\t// Wrap around: if we exceed max, start overwriting from 1\n\treturn next > MAX_EPISODES ? ((maxSlot % MAX_EPISODES) + 1) : next;\n}\n","// hebbian — Inbox Processing\n//\n// Parses _inbox/corrections.jsonl and auto-creates/fires neurons from\n// AI corrections. Security checks prevent path traversal. Only PM/admin\n// roles can award dopamine (inflation filter).\n//\n// Port from: NeuronFS/runtime/main.go lines 1425-1544\n\nimport { readFileSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { REGIONS } from './constants';\nimport { growNeuron } from './grow';\nimport { fireNeuron } from './fire';\nimport { signalNeuron } from './signal';\nimport { logEpisode } from './episode';\n\nconst INBOX_DIR = '_inbox';\nconst CORRECTIONS_FILE = 'corrections.jsonl';\nconst DOPAMINE_ALLOWED_ROLES = ['pm', 'admin', 'lead'];\n\nexport interface Correction {\n\tts: string;\n\ttype: 'correction';\n\ttext: string;\n\tpath: string;\n\tcounter_add: number;\n\tauthor: string;\n\tdopamine?: number;\n}\n\nexport interface InboxResult {\n\tprocessed: number;\n\tskipped: number;\n\terrors: string[];\n}\n\n/**\n * Process the inbox corrections file.\n * Each line is a JSON object describing a correction to apply.\n */\nexport function processInbox(brainRoot: string): InboxResult {\n\tconst inboxPath = join(brainRoot, INBOX_DIR, CORRECTIONS_FILE);\n\n\tif (!existsSync(inboxPath)) {\n\t\treturn { processed: 0, skipped: 0, errors: [] };\n\t}\n\n\tconst content = readFileSync(inboxPath, 'utf8').trim();\n\tif (!content) {\n\t\treturn { processed: 0, skipped: 0, errors: [] };\n\t}\n\n\tconst lines = content.split('\\n').filter(Boolean);\n\tlet processed = 0;\n\tlet skipped = 0;\n\tconst errors: string[] = [];\n\n\tfor (const line of lines) {\n\t\tlet correction: Correction;\n\t\ttry {\n\t\t\tcorrection = JSON.parse(line) as Correction;\n\t\t} catch {\n\t\t\terrors.push(`Malformed JSON: ${line.slice(0, 80)}`);\n\t\t\tskipped++;\n\t\t\tcontinue;\n\t\t}\n\n\t\t// Validate required fields\n\t\tif (!correction.path || !correction.type) {\n\t\t\terrors.push(`Missing path or type: ${line.slice(0, 80)}`);\n\t\t\tskipped++;\n\t\t\tcontinue;\n\t\t}\n\n\t\t// Security: path traversal check\n\t\tif (!isPathSafe(correction.path)) {\n\t\t\terrors.push(`Path traversal blocked: ${correction.path}`);\n\t\t\tskipped++;\n\t\t\tcontinue;\n\t\t}\n\n\t\t// Security: validate region\n\t\tconst region = correction.path.split('/')[0];\n\t\tif (!region || !(REGIONS as readonly string[]).includes(region)) {\n\t\t\terrors.push(`Invalid region in path: ${correction.path}`);\n\t\t\tskipped++;\n\t\t\tcontinue;\n\t\t}\n\n\t\ttry {\n\t\t\tapplyCorrection(brainRoot, correction);\n\t\t\tprocessed++;\n\t\t} catch (err) {\n\t\t\terrors.push(`Failed to apply ${correction.path}: ${(err as Error).message}`);\n\t\t\tskipped++;\n\t\t}\n\t}\n\n\t// Clear the inbox file after processing\n\twriteFileSync(inboxPath, '', 'utf8');\n\n\tconsole.log(`📥 inbox: processed ${processed}, skipped ${skipped}`);\n\tif (errors.length > 0) {\n\t\tfor (const err of errors) {\n\t\t\tconsole.log(` ⚠️ ${err}`);\n\t\t}\n\t}\n\n\treturn { processed, skipped, errors };\n}\n\n/**\n * Apply a single correction entry.\n */\nfunction applyCorrection(brainRoot: string, correction: Correction): void {\n\tconst neuronPath = correction.path;\n\tconst fullPath = join(brainRoot, neuronPath);\n\tconst counterAdd = Math.max(1, correction.counter_add || 1);\n\n\tif (existsSync(fullPath)) {\n\t\t// Neuron exists — fire N times\n\t\tfor (let i = 0; i < counterAdd; i++) {\n\t\t\tfireNeuron(brainRoot, neuronPath);\n\t\t}\n\t} else {\n\t\t// Neuron doesn't exist — grow + fire (N-1)\n\t\tgrowNeuron(brainRoot, neuronPath);\n\t\tfor (let i = 1; i < counterAdd; i++) {\n\t\t\tfireNeuron(brainRoot, neuronPath);\n\t\t}\n\t}\n\n\t// Dopamine inflation filter: only allowed roles can award dopamine\n\tif (correction.dopamine && correction.dopamine > 0) {\n\t\tconst author = (correction.author || '').toLowerCase();\n\t\tif (DOPAMINE_ALLOWED_ROLES.includes(author)) {\n\t\t\tsignalNeuron(brainRoot, neuronPath, 'dopamine');\n\t\t}\n\t}\n\n\tlogEpisode(brainRoot, 'inbox', neuronPath, correction.text || '');\n}\n\n/**\n * Security: check path for traversal attacks.\n */\nfunction isPathSafe(path: string): boolean {\n\tif (path.includes('..')) return false;\n\tif (path.startsWith('/')) return false;\n\tif (path.includes('\\\\')) return false;\n\t// Block null bytes\n\tif (path.includes('\\0')) return false;\n\treturn true;\n}\n\n/**\n * Ensure the inbox directory and corrections file exist.\n */\nexport function ensureInbox(brainRoot: string): string {\n\tconst inboxDir = join(brainRoot, INBOX_DIR);\n\tif (!existsSync(inboxDir)) {\n\t\tmkdirSync(inboxDir, { recursive: true });\n\t}\n\tconst filePath = join(inboxDir, CORRECTIONS_FILE);\n\tif (!existsSync(filePath)) {\n\t\twriteFileSync(filePath, '', 'utf8');\n\t}\n\treturn filePath;\n}\n\n/**\n * Append a correction entry to the inbox.\n */\nexport function appendCorrection(brainRoot: string, correction: Correction): void {\n\tconst filePath = ensureInbox(brainRoot);\n\tconst line = JSON.stringify(correction) + '\\n';\n\tconst existing = readFileSync(filePath, 'utf8');\n\twriteFileSync(filePath, existing + line, 'utf8');\n}\n","// hebbian — REST API Server\n//\n// Programmatic brain manipulation via HTTP. Zero dependencies (node:http).\n// Enables external tools (n8n, webhooks, dashboards) to interact with hebbian.\n//\n// Port from: NeuronFS/runtime/main.go lines 2099-2434\n\nimport { createServer, type IncomingMessage, type ServerResponse } from 'node:http';\nimport { scanBrain } from './scanner';\nimport { runSubsumption } from './subsumption';\nimport { fireNeuron } from './fire';\nimport { rollbackNeuron } from './rollback';\nimport { growNeuron } from './grow';\nimport { signalNeuron } from './signal';\nimport { runDecay } from './decay';\nimport { runDedup } from './dedup';\nimport { writeAllTiers } from './emit';\nimport { processInbox } from './inbox';\nimport { REGIONS, REGION_ICONS, REGION_KO, type SignalType } from './constants';\nimport type { RegionName } from './constants';\n\nlet lastAPIActivity = Date.now();\n\nexport interface ReportEntry {\n\tts: string;\n\tmessage: string;\n\tpriority: 'low' | 'normal' | 'high' | 'critical';\n}\n\nconst pendingReports: ReportEntry[] = [];\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// JSON Response Builders\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\nfunction buildHealthJSON(brainRoot: string) {\n\tconst brain = scanBrain(brainRoot);\n\tconst result = runSubsumption(brain);\n\treturn {\n\t\tstatus: 'ok',\n\t\tbrain: brainRoot,\n\t\tneurons: result.totalNeurons,\n\t\tactiveNeurons: result.firedNeurons,\n\t\ttotalActivation: result.totalCounter,\n\t\tbombSource: result.bombSource || null,\n\t\tlastActivity: new Date(lastAPIActivity).toISOString(),\n\t\tuptime: process.uptime(),\n\t};\n}\n\nfunction buildBrainJSON(brainRoot: string) {\n\tconst brain = scanBrain(brainRoot);\n\tconst result = runSubsumption(brain);\n\treturn {\n\t\troot: brain.root,\n\t\tregions: brain.regions.map((region) => ({\n\t\t\tname: region.name,\n\t\t\ticon: REGION_ICONS[region.name as RegionName] || '',\n\t\t\tko: REGION_KO[region.name as RegionName] || '',\n\t\t\tpriority: region.priority,\n\t\t\thasBomb: region.hasBomb,\n\t\t\tneurons: region.neurons.map((n) => ({\n\t\t\t\tname: n.name,\n\t\t\t\tpath: n.path,\n\t\t\t\tcounter: n.counter,\n\t\t\t\tcontra: n.contra,\n\t\t\t\tdopamine: n.dopamine,\n\t\t\t\thasBomb: n.hasBomb,\n\t\t\t\thasMemory: n.hasMemory,\n\t\t\t\tisDormant: n.isDormant,\n\t\t\t\tdepth: n.depth,\n\t\t\t\tmodTime: n.modTime.getTime(),\n\t\t\t})),\n\t\t\taxons: region.axons,\n\t\t})),\n\t\tbombSource: result.bombSource || null,\n\t\tfiredNeurons: result.firedNeurons,\n\t\ttotalNeurons: result.totalNeurons,\n\t\ttotalCounter: result.totalCounter,\n\t};\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// HTTP Helpers\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\nfunction json(res: ServerResponse, data: unknown, status = 200): void {\n\tconst body = JSON.stringify(data);\n\tres.writeHead(status, {\n\t\t'Content-Type': 'application/json',\n\t\t'Access-Control-Allow-Origin': '*',\n\t\t'Access-Control-Allow-Methods': 'GET, POST, OPTIONS',\n\t\t'Access-Control-Allow-Headers': 'Content-Type',\n\t});\n\tres.end(body);\n}\n\nfunction error(res: ServerResponse, message: string, status = 400): void {\n\tjson(res, { error: message }, status);\n}\n\nasync function readBody(req: IncomingMessage): Promise<string> {\n\treturn new Promise((resolve, reject) => {\n\t\tconst chunks: Buffer[] = [];\n\t\treq.on('data', (chunk: Buffer) => chunks.push(chunk));\n\t\treq.on('end', () => resolve(Buffer.concat(chunks).toString('utf8')));\n\t\treq.on('error', reject);\n\t});\n}\n\nasync function parseJSON(req: IncomingMessage): Promise<Record<string, unknown>> {\n\tconst body = await readBody(req);\n\tif (!body.trim()) return {};\n\treturn JSON.parse(body) as Record<string, unknown>;\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// Route Handlers\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\nasync function handleRequest(\n\treq: IncomingMessage,\n\tres: ServerResponse,\n\tbrainRoot: string,\n): Promise<void> {\n\tconst url = new URL(req.url || '/', `http://${req.headers.host || 'localhost'}`);\n\tconst path = url.pathname;\n\tconst method = req.method || 'GET';\n\n\t// CORS preflight\n\tif (method === 'OPTIONS') {\n\t\tjson(res, null, 204);\n\t\treturn;\n\t}\n\n\t// Track activity on mutations\n\tconst isMutation = method === 'POST';\n\tif (isMutation) lastAPIActivity = Date.now();\n\n\ttry {\n\t\t// GET endpoints\n\t\tif (method === 'GET') {\n\t\t\tswitch (path) {\n\t\t\t\tcase '/api/health':\n\t\t\t\t\tjson(res, buildHealthJSON(brainRoot));\n\t\t\t\t\treturn;\n\t\t\t\tcase '/api/brain':\n\t\t\t\t\tjson(res, buildBrainJSON(brainRoot));\n\t\t\t\t\treturn;\n\t\t\t\tcase '/api/read': {\n\t\t\t\t\tconst region = url.searchParams.get('region');\n\t\t\t\t\tif (!region || !(REGIONS as readonly string[]).includes(region)) {\n\t\t\t\t\t\terror(res, `Invalid region. Valid: ${REGIONS.join(', ')}`);\n\t\t\t\t\t\treturn;\n\t\t\t\t\t}\n\t\t\t\t\tconst brain = scanBrain(brainRoot);\n\t\t\t\t\tconst result = runSubsumption(brain);\n\t\t\t\t\tconst regionData = result.activeRegions.find((r) => r.name === region);\n\t\t\t\t\tif (!regionData) {\n\t\t\t\t\t\terror(res, `Region \"${region}\" is blocked or empty`);\n\t\t\t\t\t\treturn;\n\t\t\t\t\t}\n\t\t\t\t\t// Auto-fire top 3 for RAG retrieval\n\t\t\t\t\tconst top3 = [...regionData.neurons]\n\t\t\t\t\t\t.filter((n) => !n.isDormant)\n\t\t\t\t\t\t.sort((a, b) => b.counter - a.counter)\n\t\t\t\t\t\t.slice(0, 3);\n\t\t\t\t\tfor (const n of top3) {\n\t\t\t\t\t\tfireNeuron(brainRoot, `${region}/${n.path}`);\n\t\t\t\t\t}\n\t\t\t\t\tjson(res, {\n\t\t\t\t\t\tregion: region,\n\t\t\t\t\t\tneurons: regionData.neurons,\n\t\t\t\t\t\tfired: top3.map((n) => n.path),\n\t\t\t\t\t});\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/reports':\n\t\t\t\t\tjson(res, { reports: pendingReports });\n\t\t\t\t\treturn;\n\t\t\t\tdefault:\n\t\t\t\t\terror(res, 'Not found', 404);\n\t\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\n\t\t// POST endpoints\n\t\tif (method === 'POST') {\n\t\t\tconst body = await parseJSON(req);\n\n\t\t\tswitch (path) {\n\t\t\t\tcase '/api/grow': {\n\t\t\t\t\tconst neuronPath = body.path as string;\n\t\t\t\t\tif (!neuronPath) { error(res, 'Missing \"path\"'); return; }\n\t\t\t\t\tconst result = growNeuron(brainRoot, neuronPath);\n\t\t\t\t\tjson(res, result);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/fire': {\n\t\t\t\t\tconst neuronPath = body.path as string;\n\t\t\t\t\tif (!neuronPath) { error(res, 'Missing \"path\"'); return; }\n\t\t\t\t\tconst counter = fireNeuron(brainRoot, neuronPath);\n\t\t\t\t\tjson(res, { path: neuronPath, counter });\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/signal': {\n\t\t\t\t\tconst neuronPath = body.path as string;\n\t\t\t\t\tconst signalType = body.type as string;\n\t\t\t\t\tif (!neuronPath || !signalType) { error(res, 'Missing \"path\" or \"type\"'); return; }\n\t\t\t\t\tsignalNeuron(brainRoot, neuronPath, signalType as SignalType);\n\t\t\t\t\tjson(res, { path: neuronPath, type: signalType });\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/rollback': {\n\t\t\t\t\tconst neuronPath = body.path as string;\n\t\t\t\t\tif (!neuronPath) { error(res, 'Missing \"path\"'); return; }\n\t\t\t\t\tconst counter = rollbackNeuron(brainRoot, neuronPath);\n\t\t\t\t\tjson(res, { path: neuronPath, counter });\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/decay': {\n\t\t\t\t\tconst days = typeof body.days === 'number' ? body.days : 30;\n\t\t\t\t\tconst result = runDecay(brainRoot, days);\n\t\t\t\t\tjson(res, result);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/dedup': {\n\t\t\t\t\tconst result = runDedup(brainRoot);\n\t\t\t\t\tjson(res, result);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/inject': {\n\t\t\t\t\tconst brain = scanBrain(brainRoot);\n\t\t\t\t\tconst result = runSubsumption(brain);\n\t\t\t\t\twriteAllTiers(brainRoot, result, brain);\n\t\t\t\t\tjson(res, { injected: true });\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/inbox': {\n\t\t\t\t\tconst result = processInbox(brainRoot);\n\t\t\t\t\tjson(res, result);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/report': {\n\t\t\t\t\tconst message = body.message as string;\n\t\t\t\t\tconst priority = (body.priority as string) || 'normal';\n\t\t\t\t\tif (!message) { error(res, 'Missing \"message\"'); return; }\n\t\t\t\t\tconst entry: ReportEntry = {\n\t\t\t\t\t\tts: new Date().toISOString(),\n\t\t\t\t\t\tmessage,\n\t\t\t\t\t\tpriority: priority as ReportEntry['priority'],\n\t\t\t\t\t};\n\t\t\t\t\tpendingReports.push(entry);\n\t\t\t\t\tjson(res, entry);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tdefault:\n\t\t\t\t\terror(res, 'Not found', 404);\n\t\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\n\t\terror(res, 'Method not allowed', 405);\n\t} catch (err) {\n\t\terror(res, (err as Error).message, 500);\n\t}\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// Server\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Start the hebbian REST API server.\n */\nexport function startAPI(brainRoot: string, port = 9090): ReturnType<typeof createServer> {\n\tconst server = createServer((req, res) => {\n\t\thandleRequest(req, res, brainRoot).catch((err) => {\n\t\t\terror(res, (err as Error).message, 500);\n\t\t});\n\t});\n\n\tserver.listen(port, () => {\n\t\tconsole.log(`🧠 hebbian API listening on http://localhost:${port}`);\n\t\tconsole.log(` Brain: ${brainRoot}`);\n\t\tconsole.log('');\n\t\tconsole.log(' Endpoints:');\n\t\tconsole.log(' GET /api/health Process health + brain stats');\n\t\tconsole.log(' GET /api/brain Full brain state JSON');\n\t\tconsole.log(' GET /api/read?region=X Read region (auto-fires top 3)');\n\t\tconsole.log(' GET /api/reports List pending reports');\n\t\tconsole.log(' POST /api/grow {\"path\":\"cortex/...\"}');\n\t\tconsole.log(' POST /api/fire {\"path\":\"cortex/...\"}');\n\t\tconsole.log(' POST /api/signal {\"path\":\"...\",\"type\":\"dopamine\"}');\n\t\tconsole.log(' POST /api/rollback {\"path\":\"cortex/...\"}');\n\t\tconsole.log(' POST /api/decay {\"days\":30}');\n\t\tconsole.log(' POST /api/dedup Batch merge similar neurons');\n\t\tconsole.log(' POST /api/inject Force re-emit all tiers');\n\t\tconsole.log(' POST /api/inbox Process corrections inbox');\n\t\tconsole.log(' POST /api/report {\"message\":\"...\",\"priority\":\"normal\"}');\n\t});\n\n\treturn server;\n}\n\n/**\n * Get the last API activity timestamp.\n */\nexport function getLastActivity(): number {\n\treturn lastAPIActivity;\n}\n\n/**\n * Get pending reports (for external access).\n */\nexport function getPendingReports(): ReportEntry[] {\n\treturn pendingReports;\n}\n\n/**\n * Clear pending reports.\n */\nexport function clearReports(): void {\n\tpendingReports.length = 0;\n}\n","// hebbian — Claude Code Hooks Integration\n//\n// Manages Claude Code hooks in .claude/settings.local.json.\n// Uses [hebbian] statusMessage marker for ownership tracking.\n//\n// SessionStart hook: refreshes CLAUDE.md with latest brain state\n// Stop hook: digests conversation transcript for corrections\n\nimport { readFileSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';\nimport { join, resolve } from 'node:path';\nimport { HOOK_MARKER } from './constants';\n\nconst SETTINGS_DIR = '.claude';\nconst SETTINGS_FILE = 'settings.local.json';\n\nexport interface HookStatus {\n\tinstalled: boolean;\n\tpath: string;\n\tevents: string[];\n}\n\ninterface HookEntry {\n\ttype: string;\n\tcommand: string;\n\ttimeout?: number;\n\tstatusMessage?: string;\n}\n\ninterface HookGroup {\n\tmatcher?: string;\n\thooks: HookEntry[];\n}\n\n/**\n * Install hebbian hooks into .claude/settings.local.json.\n * Deep-merges with existing settings. Uses statusMessage marker for ownership.\n */\nexport function installHooks(brainRoot: string, projectRoot?: string): void {\n\tconst root = projectRoot || process.cwd();\n\tconst settingsDir = join(root, SETTINGS_DIR);\n\tconst settingsPath = join(settingsDir, SETTINGS_FILE);\n\n\t// Determine if we need --brain flag\n\tconst defaultBrain = resolve(root, 'brain');\n\tconst resolvedBrain = resolve(brainRoot);\n\tconst brainFlag = resolvedBrain === defaultBrain ? '' : ` --brain ${resolvedBrain}`;\n\n\t// Read existing settings or start fresh\n\tlet settings: Record<string, unknown> = {};\n\tif (existsSync(settingsPath)) {\n\t\ttry {\n\t\t\tsettings = JSON.parse(readFileSync(settingsPath, 'utf8'));\n\t\t} catch {\n\t\t\tconsole.log(`\\u26A0\\uFE0F settings.local.json was malformed, overwriting`);\n\t\t}\n\t}\n\n\t// Ensure hooks object exists\n\tif (!settings.hooks || typeof settings.hooks !== 'object') {\n\t\tsettings.hooks = {};\n\t}\n\tconst hooks = settings.hooks as Record<string, HookGroup[]>;\n\n\t// Define hebbian hooks\n\tconst hebbianHooks: Array<{ event: string; matcher?: string; entry: HookEntry }> = [\n\t\t{\n\t\t\tevent: 'SessionStart',\n\t\t\tmatcher: 'startup|resume',\n\t\t\tentry: {\n\t\t\t\ttype: 'command',\n\t\t\t\tcommand: `hebbian emit claude${brainFlag}`,\n\t\t\t\ttimeout: 10,\n\t\t\t\tstatusMessage: `${HOOK_MARKER} refreshing brain`,\n\t\t\t},\n\t\t},\n\t\t{\n\t\t\tevent: 'Stop',\n\t\t\tentry: {\n\t\t\t\ttype: 'command',\n\t\t\t\tcommand: `hebbian digest${brainFlag}`,\n\t\t\t\ttimeout: 30,\n\t\t\t\tstatusMessage: `${HOOK_MARKER} digesting session`,\n\t\t\t},\n\t\t},\n\t];\n\n\t// Install each hook\n\tfor (const { event, matcher, entry } of hebbianHooks) {\n\t\tif (!hooks[event]) {\n\t\t\thooks[event] = [];\n\t\t}\n\n\t\t// Find existing hebbian group for this event\n\t\tconst existingIdx = hooks[event]!.findIndex((group) =>\n\t\t\tgroup.hooks.some((h) => h.statusMessage?.startsWith(HOOK_MARKER)),\n\t\t);\n\n\t\tconst group: HookGroup = {\n\t\t\t...(matcher ? { matcher } : {}),\n\t\t\thooks: [entry],\n\t\t};\n\n\t\tif (existingIdx >= 0) {\n\t\t\t// Update existing entry\n\t\t\thooks[event]![existingIdx] = group;\n\t\t} else {\n\t\t\t// Append new entry\n\t\t\thooks[event]!.push(group);\n\t\t}\n\t}\n\n\t// Write back\n\tif (!existsSync(settingsDir)) {\n\t\tmkdirSync(settingsDir, { recursive: true });\n\t}\n\twriteFileSync(settingsPath, JSON.stringify(settings, null, 2) + '\\n', 'utf8');\n\n\tconsole.log(`\\u2705 hebbian hooks installed at ${settingsPath}`);\n\tconsole.log(` SessionStart \\u2192 hebbian emit claude${brainFlag}`);\n\tconsole.log(` Stop \\u2192 hebbian digest${brainFlag}`);\n}\n\n/**\n * Remove hebbian hooks from .claude/settings.local.json.\n * Preserves non-hebbian hooks and other settings.\n */\nexport function uninstallHooks(projectRoot?: string): void {\n\tconst root = projectRoot || process.cwd();\n\tconst settingsPath = join(root, SETTINGS_DIR, SETTINGS_FILE);\n\n\tif (!existsSync(settingsPath)) {\n\t\tconsole.log('No hooks installed (settings.local.json not found)');\n\t\treturn;\n\t}\n\n\tlet settings: Record<string, unknown>;\n\ttry {\n\t\tsettings = JSON.parse(readFileSync(settingsPath, 'utf8'));\n\t} catch {\n\t\tconsole.log('settings.local.json is malformed, nothing to uninstall');\n\t\treturn;\n\t}\n\n\tif (!settings.hooks || typeof settings.hooks !== 'object') {\n\t\tconsole.log('No hooks found in settings.local.json');\n\t\treturn;\n\t}\n\n\tconst hooks = settings.hooks as Record<string, HookGroup[]>;\n\tlet removed = 0;\n\n\tfor (const event of Object.keys(hooks)) {\n\t\tconst before = hooks[event]!.length;\n\t\thooks[event] = hooks[event]!.filter(\n\t\t\t(group) => !group.hooks.some((h) => h.statusMessage?.startsWith(HOOK_MARKER)),\n\t\t);\n\t\tremoved += before - hooks[event]!.length;\n\n\t\t// Clean up empty event arrays\n\t\tif (hooks[event]!.length === 0) {\n\t\t\tdelete hooks[event];\n\t\t}\n\t}\n\n\t// Clean up empty hooks object\n\tif (Object.keys(hooks).length === 0) {\n\t\tdelete settings.hooks;\n\t}\n\n\twriteFileSync(settingsPath, JSON.stringify(settings, null, 2) + '\\n', 'utf8');\n\tconsole.log(`\\u2705 removed ${removed} hebbian hook(s) from ${settingsPath}`);\n}\n\n/**\n * Check if hebbian hooks are installed.\n */\nexport function checkHooks(projectRoot?: string): HookStatus {\n\tconst root = projectRoot || process.cwd();\n\tconst settingsPath = join(root, SETTINGS_DIR, SETTINGS_FILE);\n\n\tconst status: HookStatus = {\n\t\tinstalled: false,\n\t\tpath: settingsPath,\n\t\tevents: [],\n\t};\n\n\tif (!existsSync(settingsPath)) {\n\t\tconsole.log(`\\u274C hebbian hooks not installed (${settingsPath} not found)`);\n\t\treturn status;\n\t}\n\n\tlet settings: Record<string, unknown>;\n\ttry {\n\t\tsettings = JSON.parse(readFileSync(settingsPath, 'utf8'));\n\t} catch {\n\t\tconsole.log(`\\u274C settings.local.json is malformed`);\n\t\treturn status;\n\t}\n\n\tif (!settings.hooks || typeof settings.hooks !== 'object') {\n\t\tconsole.log(`\\u274C no hooks in ${settingsPath}`);\n\t\treturn status;\n\t}\n\n\tconst hooks = settings.hooks as Record<string, HookGroup[]>;\n\n\tfor (const event of Object.keys(hooks)) {\n\t\tconst hasHebbian = hooks[event]!.some((group) =>\n\t\t\tgroup.hooks.some((h) => h.statusMessage?.startsWith(HOOK_MARKER)),\n\t\t);\n\t\tif (hasHebbian) {\n\t\t\tstatus.events.push(event);\n\t\t}\n\t}\n\n\tstatus.installed = status.events.length > 0;\n\n\tif (status.installed) {\n\t\tconsole.log(`\\u2705 hebbian hooks installed at ${settingsPath}`);\n\t\tfor (const event of status.events) {\n\t\t\tconsole.log(` ${event} \\u2714`);\n\t\t}\n\t} else {\n\t\tconsole.log(`\\u274C hebbian hooks not found in ${settingsPath}`);\n\t}\n\n\treturn status;\n}\n","// hebbian — Conversation Digest (Correction Extraction)\n//\n// Parses Claude Code conversation transcripts (JSONL) and extracts\n// user corrections via pattern matching. Writes corrections to inbox,\n// auto-processes them, and logs an audit trail.\n//\n// Correction detection is deliberately heuristic — WS3 candidate staging\n// is the quality safety net for false positives.\n\nimport { readFileSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';\nimport { join, basename } from 'node:path';\nimport { MAX_CORRECTIONS_PER_SESSION, MIN_CORRECTION_LENGTH, DIGEST_LOG_DIR } from './constants';\nimport { growNeuron } from './grow';\nimport { logEpisode } from './episode';\nimport { tokenize } from './similarity';\n\nexport interface DigestResult {\n\tcorrections: number;\n\tskipped: number;\n\ttranscriptPath: string;\n\tsessionId: string;\n}\n\nexport interface ExtractedCorrection {\n\ttext: string;\n\tpath: string;\n\tprefix: 'NO' | 'DO';\n\tkeywords: string[];\n}\n\ninterface TranscriptLine {\n\ttype?: string;\n\tmessage?: {\n\t\trole?: string;\n\t\tcontent?: string | Array<{ type: string; text?: string }>;\n\t};\n\tsessionId?: string;\n\tuuid?: string;\n}\n\n// Negation patterns — user is telling the AI NOT to do something\nconst NEGATION_PATTERNS = [\n\t/\\bdon[''\\u2019]?t\\b/i,\n\t/\\bdo not\\b/i,\n\t/\\bstop\\s+\\w+ing\\b/i,\n\t/\\bnever\\b/i,\n\t/\\binstead\\b/i,\n\t/^no[,.\\s!]/i,\n\t/\\bdon[''\\u2019]?t\\s+use\\b/i,\n\t/\\bavoid\\b/i,\n\t// Korean negation\n\t/하지\\s*마/,\n\t/안\\s*돼/,\n\t/대신/,\n\t/쓰지\\s*마/,\n\t/않/,\n];\n\n// Affirmation patterns — user is telling the AI TO do something\nconst AFFIRMATION_PATTERNS = [\n\t/\\balways\\b/i,\n\t/\\bmust\\b/i,\n\t/\\bshould\\s+always\\b/i,\n\t/\\buse\\s+\\w+\\s+instead\\b/i,\n\t// Korean affirmation\n\t/항상/,\n\t/반드시/,\n];\n\n/**\n * Parse hook input from stdin to extract transcript path and session ID.\n */\nexport function readHookInput(stdin: string): { transcriptPath: string; sessionId: string } | null {\n\tif (!stdin.trim()) return null;\n\ttry {\n\t\tconst input = JSON.parse(stdin);\n\t\tif (input.transcript_path) {\n\t\t\tconst sessionId = input.session_id || basename(input.transcript_path, '.jsonl');\n\t\t\treturn { transcriptPath: input.transcript_path, sessionId };\n\t\t}\n\t\treturn null;\n\t} catch {\n\t\treturn null;\n\t}\n}\n\n/**\n * Digest a conversation transcript and extract corrections.\n * Auto-processes inbox and writes audit log.\n */\nexport function digestTranscript(brainRoot: string, transcriptPath: string, sessionId?: string): DigestResult {\n\tif (!existsSync(transcriptPath)) {\n\t\tthrow new Error(`Transcript not found: ${transcriptPath}`);\n\t}\n\n\tconst resolvedSessionId = sessionId || basename(transcriptPath, '.jsonl');\n\n\t// Dedup check: skip if already digested\n\tconst logDir = join(brainRoot, DIGEST_LOG_DIR);\n\tconst logPath = join(logDir, `${resolvedSessionId}.jsonl`);\n\tif (existsSync(logPath)) {\n\t\tconsole.log(`\\u23ED already digested session ${resolvedSessionId}, skip`);\n\t\treturn { corrections: 0, skipped: 0, transcriptPath, sessionId: resolvedSessionId };\n\t}\n\n\t// Parse transcript\n\tconst messages = parseTranscript(transcriptPath);\n\n\t// Extract corrections\n\tconst corrections = extractCorrections(messages);\n\n\tif (corrections.length === 0) {\n\t\tconsole.log(`\\uD83D\\uDCDD digest: no corrections found in session ${resolvedSessionId}`);\n\t\t// Write empty audit log to mark as digested\n\t\twriteAuditLog(brainRoot, resolvedSessionId, []);\n\t\treturn { corrections: 0, skipped: messages.length, transcriptPath, sessionId: resolvedSessionId };\n\t}\n\n\t// Apply corrections via growNeuron (handles Jaccard dedup internally)\n\tlet applied = 0;\n\tconst auditEntries: Array<{ correction: ExtractedCorrection; applied: boolean }> = [];\n\n\tfor (const correction of corrections) {\n\t\ttry {\n\t\t\tgrowNeuron(brainRoot, correction.path);\n\t\t\tlogEpisode(brainRoot, 'digest', correction.path, correction.text);\n\t\t\tauditEntries.push({ correction, applied: true });\n\t\t\tapplied++;\n\t\t} catch (err) {\n\t\t\tconsole.log(` \\u26A0\\uFE0F failed to apply: ${correction.path} — ${(err as Error).message}`);\n\t\t\tauditEntries.push({ correction, applied: false });\n\t\t}\n\t}\n\n\t// Write audit log\n\twriteAuditLog(brainRoot, resolvedSessionId, auditEntries);\n\n\tconsole.log(`\\uD83D\\uDCDD digest: ${applied} correction(s) from session ${resolvedSessionId}`);\n\treturn {\n\t\tcorrections: applied,\n\t\tskipped: messages.length - corrections.length,\n\t\ttranscriptPath,\n\t\tsessionId: resolvedSessionId,\n\t};\n}\n\n/**\n * Parse a Claude Code conversation JSONL transcript.\n * Returns user message texts only.\n */\nfunction parseTranscript(transcriptPath: string): string[] {\n\tconst content = readFileSync(transcriptPath, 'utf8');\n\tconst lines = content.split('\\n').filter(Boolean);\n\tconst messages: string[] = [];\n\n\tfor (const line of lines) {\n\t\tlet entry: TranscriptLine;\n\t\ttry {\n\t\t\tentry = JSON.parse(line);\n\t\t} catch {\n\t\t\tcontinue;\n\t\t}\n\n\t\t// Only process user messages\n\t\tif (entry.type !== 'user') continue;\n\t\tif (!entry.message || entry.message.role !== 'user') continue;\n\n\t\tconst text = extractText(entry.message.content);\n\t\tif (text) messages.push(text);\n\t}\n\n\treturn messages;\n}\n\n/**\n * Extract text from message content (handles string or content block array).\n */\nfunction extractText(content: string | Array<{ type: string; text?: string }> | undefined): string | null {\n\tif (!content) return null;\n\tif (typeof content === 'string') return content;\n\tif (Array.isArray(content)) {\n\t\tconst texts = content\n\t\t\t.filter((block) => block.type === 'text' && block.text)\n\t\t\t.map((block) => block.text!);\n\t\treturn texts.length > 0 ? texts.join('\\n') : null;\n\t}\n\treturn null;\n}\n\n/**\n * Extract corrections from user messages using pattern matching.\n * Returns up to MAX_CORRECTIONS_PER_SESSION corrections.\n */\nexport function extractCorrections(messages: string[]): ExtractedCorrection[] {\n\tconst corrections: ExtractedCorrection[] = [];\n\n\tfor (const text of messages) {\n\t\tif (corrections.length >= MAX_CORRECTIONS_PER_SESSION) break;\n\n\t\t// Skip short messages\n\t\tif (text.length < MIN_CORRECTION_LENGTH) continue;\n\n\t\t// Skip commands (start with / or !)\n\t\tif (/^[\\/!]/.test(text.trim())) continue;\n\n\t\t// Skip questions (end with ?)\n\t\tif (text.trim().endsWith('?')) continue;\n\n\t\t// Check for correction patterns\n\t\tconst correction = detectCorrection(text);\n\t\tif (correction) {\n\t\t\tcorrections.push(correction);\n\t\t}\n\t}\n\n\treturn corrections;\n}\n\n/**\n * Detect if a message is a correction and extract structured data.\n */\nfunction detectCorrection(text: string): ExtractedCorrection | null {\n\tconst isNegation = NEGATION_PATTERNS.some((p) => p.test(text));\n\tconst isAffirmation = AFFIRMATION_PATTERNS.some((p) => p.test(text));\n\n\tif (!isNegation && !isAffirmation) return null;\n\n\tconst prefix = isNegation ? 'NO' : 'DO';\n\tconst keywords = extractKeywords(text);\n\n\tif (keywords.length === 0) return null;\n\n\t// Build neuron path: cortex/{PREFIX}_{keyword1}_{keyword2}\n\tconst pathSegment = `${prefix}_${keywords.slice(0, 4).join('_')}`;\n\tconst path = `cortex/${pathSegment}`;\n\n\treturn { text, path, prefix, keywords };\n}\n\n/**\n * Extract meaningful keywords from correction text.\n * Filters out common stop words and correction-specific words.\n */\nfunction extractKeywords(text: string): string[] {\n\tconst STOP_WORDS = new Set([\n\t\t'the', 'a', 'an', 'is', 'are', 'was', 'were', 'be', 'been', 'being',\n\t\t'have', 'has', 'had', 'do', 'does', 'did', 'will', 'would', 'could',\n\t\t'should', 'may', 'might', 'shall', 'can', 'need', 'dare', 'ought',\n\t\t'to', 'of', 'in', 'for', 'on', 'with', 'at', 'by', 'from', 'as',\n\t\t'into', 'through', 'during', 'before', 'after', 'above', 'below',\n\t\t'and', 'but', 'or', 'nor', 'not', 'so', 'yet', 'both', 'either',\n\t\t'neither', 'each', 'every', 'all', 'any', 'few', 'more', 'most',\n\t\t'other', 'some', 'such', 'no', 'only', 'own', 'same', 'than',\n\t\t'too', 'very', 'just', 'because', 'until', 'while', 'that', 'this',\n\t\t'these', 'those', 'it', 'its', 'i', 'me', 'my', 'we', 'us', 'you',\n\t\t'your', 'he', 'she', 'they', 'them', 'what', 'which', 'who', 'whom',\n\t\t// Correction-specific stop words\n\t\t'don', 'dont', 'stop', 'never', 'always', 'instead', 'use', 'avoid',\n\t\t'please', 'must', 'should', 'like', 'want', 'think',\n\t]);\n\n\tconst tokens = tokenize(text);\n\treturn tokens.filter((t) => !STOP_WORDS.has(t) && t.length > 2);\n}\n\n/**\n * Write audit log for digest session.\n */\nfunction writeAuditLog(\n\tbrainRoot: string,\n\tsessionId: string,\n\tentries: Array<{ correction: ExtractedCorrection; applied: boolean }>,\n): void {\n\tconst logDir = join(brainRoot, DIGEST_LOG_DIR);\n\tif (!existsSync(logDir)) {\n\t\tmkdirSync(logDir, { recursive: true });\n\t}\n\n\tconst logPath = join(logDir, `${sessionId}.jsonl`);\n\tconst lines = entries.map((e) =>\n\t\tJSON.stringify({\n\t\t\tts: new Date().toISOString(),\n\t\t\tpath: e.correction.path,\n\t\t\ttext: e.correction.text,\n\t\t\tprefix: e.correction.prefix,\n\t\t\tkeywords: e.correction.keywords,\n\t\t\tapplied: e.applied,\n\t\t}),\n\t);\n\n\t// Even if no entries, write empty file as dedup marker\n\twriteFileSync(logPath, lines.join('\\n') + (lines.length > 0 ? '\\n' : ''), 'utf8');\n}\n","// hebbian — Folder-as-Neuron Brain for Any AI Agent\n//\n// \"Neurons that fire together, wire together.\" — Donald Hebb (1949)\n//\n// USAGE:\n// hebbian init <path> Create brain with 7 regions\n// hebbian emit <target> [--brain <path>] Compile rules (claude/cursor/gemini/copilot/generic/all)\n// hebbian fire <neuron-path> Increment neuron counter\n// hebbian grow <neuron-path> Create neuron (with merge detection)\n// hebbian rollback <neuron-path> Decrement counter (min=1)\n// hebbian signal <type> <neuron-path> Add dopamine/bomb/memory signal\n// hebbian decay [--days N] Mark inactive neurons dormant (default 30 days)\n// hebbian watch [--brain <path>] Watch for changes + auto-recompile\n// hebbian claude install|uninstall|status Manage Claude Code hooks\n// hebbian digest [--transcript <path>] Extract corrections from conversation\n// hebbian diag Print brain diagnostics\n// hebbian stats Print brain statistics\n\nimport { parseArgs } from 'node:util';\nimport { resolve } from 'node:path';\nimport type { SignalType } from './constants';\nimport { resolveBrainRoot } from './constants';\n\nconst VERSION = '0.3.0';\n\nconst HELP = `\nhebbian v${VERSION} — Folder-as-neuron brain for any AI agent.\n\n \"Neurons that fire together, wire together.\" — Donald Hebb (1949)\n\nUSAGE:\n hebbian <command> [options]\n\nCOMMANDS:\n init <path> Create brain with 7 regions\n emit <target> [--brain <path>] Compile rules (claude/cursor/gemini/copilot/generic/all)\n fire <neuron-path> Increment neuron counter (+1)\n grow <neuron-path> Create neuron (with merge detection)\n rollback <neuron-path> Decrement neuron counter (min=1)\n signal <type> <neuron-path> Add signal (dopamine/bomb/memory)\n decay [--days N] Mark inactive neurons dormant (default 30)\n dedup Batch merge similar neurons (Jaccard >= 0.6)\n snapshot Git commit current brain state\n watch Watch for changes + auto-recompile\n api [--port N] Start REST API server (default 9090)\n inbox Process corrections inbox\n claude install|uninstall|status Manage Claude Code hooks\n digest [--transcript <path>] Extract corrections from conversation\n diag Print brain diagnostics\n stats Print brain statistics\n\nOPTIONS:\n --brain <path> Brain directory (default: $HEBBIAN_BRAIN or ./brain)\n --help, -h Show this help\n --version, -v Show version\n\nEXAMPLES:\n hebbian init ./my-brain\n hebbian grow cortex/frontend/NO_console_log --brain ./my-brain\n hebbian fire cortex/frontend/NO_console_log --brain ./my-brain\n hebbian emit claude --brain ./my-brain\n hebbian emit all\n`.trim();\n\n/** Read all data from stdin (non-blocking, returns empty string if no data). */\nfunction readStdin(): Promise<string> {\n\treturn new Promise((resolve) => {\n\t\tif (process.stdin.isTTY) {\n\t\t\tresolve('');\n\t\t\treturn;\n\t\t}\n\t\tconst chunks: Buffer[] = [];\n\t\tprocess.stdin.on('data', (chunk: Buffer) => chunks.push(chunk));\n\t\tprocess.stdin.on('end', () => resolve(Buffer.concat(chunks).toString('utf8')));\n\t\tprocess.stdin.on('error', () => resolve(''));\n\t\t// Timeout after 1s to avoid hanging\n\t\tsetTimeout(() => {\n\t\t\tprocess.stdin.destroy();\n\t\t\tresolve(Buffer.concat(chunks).toString('utf8'));\n\t\t}, 1000);\n\t});\n}\n\nasync function main(argv: string[]): Promise<void> {\n\tconst { values, positionals } = parseArgs({\n\t\targs: argv,\n\t\toptions: {\n\t\t\tbrain: { type: 'string', short: 'b' },\n\t\t\tdays: { type: 'string', short: 'd' },\n\t\t\tport: { type: 'string', short: 'p' },\n\t\t\ttranscript: { type: 'string', short: 't' },\n\t\t\thelp: { type: 'boolean', short: 'h' },\n\t\t\tversion: { type: 'boolean', short: 'v' },\n\t\t},\n\t\tallowPositionals: true,\n\t\tstrict: false,\n\t});\n\n\tif (values.version) {\n\t\tconsole.log(`hebbian v${VERSION}`);\n\t\treturn;\n\t}\n\n\tconst command = positionals[0];\n\n\tif (values.help || !command) {\n\t\tconsole.log(HELP);\n\t\treturn;\n\t}\n\n\tconst brainRoot = resolveBrainRoot(values.brain as string | undefined);\n\n\tswitch (command) {\n\t\tcase 'init': {\n\t\t\tconst target = positionals[1];\n\t\t\tif (!target) {\n\t\t\t\tconsole.error('Usage: hebbian init <path>');\n\t\t\t\tprocess.exit(1);\n\t\t\t}\n\t\t\tconst { initBrain } = await import('./init');\n\t\t\tawait initBrain(resolve(target));\n\t\t\tbreak;\n\t\t}\n\t\tcase 'emit': {\n\t\t\tconst target = positionals[1];\n\t\t\tif (!target) {\n\t\t\t\tconsole.error('Usage: hebbian emit <target> (claude/cursor/gemini/copilot/generic/all)');\n\t\t\t\tprocess.exit(1);\n\t\t\t}\n\t\t\tconst { emitToTarget } = await import('./emit');\n\t\t\tawait emitToTarget(brainRoot, target);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'fire': {\n\t\t\tconst neuronPath = positionals[1];\n\t\t\tif (!neuronPath) {\n\t\t\t\tconsole.error('Usage: hebbian fire <neuron-path>');\n\t\t\t\tprocess.exit(1);\n\t\t\t}\n\t\t\tconst { fireNeuron } = await import('./fire');\n\t\t\tawait fireNeuron(brainRoot, neuronPath);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'grow': {\n\t\t\tconst neuronPath = positionals[1];\n\t\t\tif (!neuronPath) {\n\t\t\t\tconsole.error('Usage: hebbian grow <neuron-path>');\n\t\t\t\tprocess.exit(1);\n\t\t\t}\n\t\t\tconst { growNeuron } = await import('./grow');\n\t\t\tawait growNeuron(brainRoot, neuronPath);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'rollback': {\n\t\t\tconst neuronPath = positionals[1];\n\t\t\tif (!neuronPath) {\n\t\t\t\tconsole.error('Usage: hebbian rollback <neuron-path>');\n\t\t\t\tprocess.exit(1);\n\t\t\t}\n\t\t\tconst { rollbackNeuron } = await import('./rollback');\n\t\t\tawait rollbackNeuron(brainRoot, neuronPath);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'signal': {\n\t\t\tconst signalType = positionals[1];\n\t\t\tconst neuronPath = positionals[2];\n\t\t\tif (!signalType || !neuronPath) {\n\t\t\t\tconsole.error('Usage: hebbian signal <type> <neuron-path> (type: dopamine/bomb/memory)');\n\t\t\t\tprocess.exit(1);\n\t\t\t}\n\t\t\tconst { signalNeuron } = await import('./signal');\n\t\t\tawait signalNeuron(brainRoot, neuronPath, signalType as SignalType);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'decay': {\n\t\t\tconst days = values.days ? parseInt(values.days as string, 10) : 30;\n\t\t\tconst { runDecay } = await import('./decay');\n\t\t\tawait runDecay(brainRoot, days);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'dedup': {\n\t\t\tconst { runDedup } = await import('./dedup');\n\t\t\trunDedup(brainRoot);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'snapshot': {\n\t\t\tconst { gitSnapshot } = await import('./snapshot');\n\t\t\tgitSnapshot(brainRoot);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'watch': {\n\t\t\tconst { startWatch } = await import('./watch');\n\t\t\tawait startWatch(brainRoot);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'api': {\n\t\t\tconst port = values.port ? parseInt(values.port as string, 10) : 9090;\n\t\t\tconst { startAPI } = await import('./api');\n\t\t\tstartAPI(brainRoot, port);\n\t\t\t// Keep process alive — server handles shutdown\n\t\t\tawait new Promise(() => {});\n\t\t\tbreak;\n\t\t}\n\t\tcase 'inbox': {\n\t\t\tconst { processInbox } = await import('./inbox');\n\t\t\tprocessInbox(brainRoot);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'claude': {\n\t\t\tconst sub = positionals[1];\n\t\t\tconst { installHooks, uninstallHooks, checkHooks } = await import('./hooks');\n\t\t\tswitch (sub) {\n\t\t\t\tcase 'install':\n\t\t\t\t\tinstallHooks(brainRoot);\n\t\t\t\t\tbreak;\n\t\t\t\tcase 'uninstall':\n\t\t\t\t\tuninstallHooks();\n\t\t\t\t\tbreak;\n\t\t\t\tcase 'status':\n\t\t\t\t\tcheckHooks();\n\t\t\t\t\tbreak;\n\t\t\t\tdefault:\n\t\t\t\t\tconsole.error('Usage: hebbian claude <install|uninstall|status>');\n\t\t\t\t\tprocess.exit(1);\n\t\t\t}\n\t\t\tbreak;\n\t\t}\n\t\tcase 'digest': {\n\t\t\tconst transcriptFlag = values.transcript as string | undefined;\n\t\t\tconst { digestTranscript, readHookInput } = await import('./digest');\n\t\t\tif (transcriptFlag) {\n\t\t\t\tdigestTranscript(brainRoot, resolve(transcriptFlag));\n\t\t\t} else {\n\t\t\t\t// Read stdin for hook input\n\t\t\t\tconst stdin = await readStdin();\n\t\t\t\tconst hookInput = readHookInput(stdin);\n\t\t\t\tif (hookInput) {\n\t\t\t\t\tdigestTranscript(brainRoot, hookInput.transcriptPath, hookInput.sessionId);\n\t\t\t\t} else {\n\t\t\t\t\tconsole.error('Usage: hebbian digest --transcript <path>');\n\t\t\t\t\tconsole.error(' Or pipe hook input via stdin (Claude Code Stop hook)');\n\t\t\t\t\tprocess.exit(1);\n\t\t\t\t}\n\t\t\t}\n\t\t\tbreak;\n\t\t}\n\t\tcase 'diag':\n\t\tcase 'stats': {\n\t\t\tconst { scanBrain } = await import('./scanner');\n\t\t\tconst { runSubsumption } = await import('./subsumption');\n\t\t\tconst brain = scanBrain(brainRoot);\n\t\t\tconst result = runSubsumption(brain);\n\t\t\tconst { printDiag } = await import('./emit');\n\t\t\tprintDiag(brain, result);\n\t\t\tbreak;\n\t\t}\n\t\tdefault:\n\t\t\tconsole.error(`Unknown command: ${command}`);\n\t\t\tconsole.log(HELP);\n\t\t\tprocess.exit(1);\n\t}\n}\n\nmain(process.argv.slice(2)).catch((err: Error) => 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1
+ {"version":3,"sources":["../../src/constants.ts","../../src/init.ts","../../src/scanner.ts","../../src/subsumption.ts","../../src/emit.ts","../../src/fire.ts","../../src/similarity.ts","../../src/grow.ts","../../src/rollback.ts","../../src/signal.ts","../../src/decay.ts","../../src/dedup.ts","../../src/snapshot.ts","../../src/watch.ts","../../src/episode.ts","../../src/inbox.ts","../../src/api.ts","../../src/hooks.ts","../../src/digest.ts","../../src/cli.ts"],"sourcesContent":["// hebbian — Constants & Configuration\n//\n// AXIOMS:\n// 1. Folder = Neuron (name is meaning, depth is specificity)\n// 2. File = Firing Trace (N.neuron = counter, dopamineN = reward, bomb = pain)\n// 3. Path = Sentence (brain/cortex/quality/no_hardcoded → \"cortex > quality > no_hardcoded\")\n// 4. Counter = Activation (higher = stronger/myelinated path)\n// 5. AI writes back (counter increment = experience growth)\n\nexport const REGIONS = [\n\t'brainstem',\n\t'limbic',\n\t'hippocampus',\n\t'sensors',\n\t'cortex',\n\t'ego',\n\t'prefrontal',\n] as const;\n\nexport type RegionName = (typeof REGIONS)[number];\n\nexport const REGION_PRIORITY: Record<RegionName, number> = {\n\tbrainstem: 0,\n\tlimbic: 1,\n\thippocampus: 2,\n\tsensors: 3,\n\tcortex: 4,\n\tego: 5,\n\tprefrontal: 6,\n};\n\nexport const REGION_ICONS: Record<RegionName, string> = {\n\tbrainstem: '🛡️',\n\tlimbic: '💓',\n\thippocampus: '📝',\n\tsensors: '👁️',\n\tcortex: '🧠',\n\tego: '🎭',\n\tprefrontal: '🎯',\n};\n\nexport const REGION_KO: Record<RegionName, string> = {\n\tbrainstem: '양심/본능',\n\tlimbic: '감정 필터',\n\thippocampus: '기록/기억',\n\tsensors: '환경 제약',\n\tcortex: '지식/기술',\n\tego: '성향/톤',\n\tprefrontal: '목표/계획',\n};\n\nexport const EMIT_THRESHOLD = 5;\nexport const SPOTLIGHT_DAYS = 7;\nexport const JACCARD_THRESHOLD = 0.6;\nexport const DECAY_DAYS = 30;\nexport const MAX_DEPTH = 6;\n\nexport const EMIT_TARGETS: Record<string, string> = {\n\tgemini: '.gemini/GEMINI.md',\n\tcursor: '.cursorrules',\n\tclaude: 'CLAUDE.md',\n\tcopilot: '.github/copilot-instructions.md',\n\tgeneric: '.neuronrc',\n};\n\nexport const SIGNAL_TYPES = ['dopamine', 'bomb', 'memory'] as const;\nexport type SignalType = (typeof SIGNAL_TYPES)[number];\n\nexport const MARKER_START = '<!-- HEBBIAN:START -->';\nexport const MARKER_END = '<!-- HEBBIAN:END -->';\n\n// Hook ownership marker — used to identify hebbian-managed hooks in settings.local.json\nexport const HOOK_MARKER = '[hebbian]';\n\n// Digest constants\nexport const MAX_CORRECTIONS_PER_SESSION = 10;\nexport const MIN_CORRECTION_LENGTH = 15;\nexport const DIGEST_LOG_DIR = 'hippocampus/digest_log';\n\nimport { resolve } from 'node:path';\nimport { existsSync } from 'node:fs';\n\n/** Resolve brain root path from flag, env var, or defaults */\nexport function resolveBrainRoot(brainFlag?: string): string {\n\tif (brainFlag) return resolve(brainFlag);\n\tif (process.env.HEBBIAN_BRAIN) return resolve(process.env.HEBBIAN_BRAIN);\n\tif (existsSync(resolve('./brain'))) return resolve('./brain');\n\treturn resolve(process.env.HOME || '~', 'hebbian', 'brain');\n}\n","// hebbian — Brain Initialization\n//\n// Creates a brain directory with 7 canonical regions and starter neurons.\n// Each region gets a _rules.md explaining its purpose.\n\nimport { mkdirSync, writeFileSync, existsSync, readdirSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { REGIONS, REGION_ICONS, REGION_KO } from './constants';\nimport type { RegionName } from './constants';\n\ninterface RegionTemplate {\n\tdescription: string;\n\tstarters: string[];\n}\n\nconst REGION_TEMPLATES: Record<RegionName, RegionTemplate> = {\n\tbrainstem: {\n\t\tdescription: 'Absolute principles. Immutable. Read-only conscience.\\nP0 — highest priority. bomb here halts EVERYTHING.',\n\t\tstarters: ['NO_fallback', 'DO_execute_not_debate'],\n\t},\n\tlimbic: {\n\t\tdescription: 'Emotional filters and somatic markers.\\nP1 — automatic, influences downstream regions.',\n\t\tstarters: [],\n\t},\n\thippocampus: {\n\t\tdescription: 'Memory and episode recording.\\nP2 — accumulated experience, session logs.',\n\t\tstarters: [],\n\t},\n\tsensors: {\n\t\tdescription: 'Environment constraints and input validation.\\nP3 — read-only, set by environment.',\n\t\tstarters: [],\n\t},\n\tcortex: {\n\t\tdescription: 'Knowledge and skills. The largest region.\\nP4 — learnable, grows with corrections.',\n\t\tstarters: [],\n\t},\n\tego: {\n\t\tdescription: 'Personality, tone, and communication style.\\nP5 — set by user preference.',\n\t\tstarters: [],\n\t},\n\tprefrontal: {\n\t\tdescription: 'Goals, projects, and planning.\\nP6 — lowest priority, longest time horizon.',\n\t\tstarters: [],\n\t},\n};\n\n/**\n * Initialize a new brain directory with 7 regions.\n */\nexport function initBrain(brainPath: string): void {\n\tif (existsSync(brainPath)) {\n\t\tconst entries = readdirSync(brainPath);\n\t\tif (entries.some((e) => (REGIONS as readonly string[]).includes(e))) {\n\t\t\tconsole.log(`\\u{26A0}\\uFE0F Brain already exists at ${brainPath}`);\n\t\t\treturn;\n\t\t}\n\t}\n\n\tmkdirSync(brainPath, { recursive: true });\n\n\tfor (const regionName of REGIONS) {\n\t\tconst regionDir = join(brainPath, regionName);\n\t\tmkdirSync(regionDir, { recursive: true });\n\n\t\tconst template = REGION_TEMPLATES[regionName];\n\t\tconst icon = REGION_ICONS[regionName];\n\t\tconst ko = REGION_KO[regionName];\n\n\t\t// Write _rules.md template\n\t\twriteFileSync(\n\t\t\tjoin(regionDir, '_rules.md'),\n\t\t\t`# ${icon} ${regionName} (${ko})\\n\\n${template.description}\\n`,\n\t\t\t'utf8',\n\t\t);\n\n\t\t// Create starter neurons\n\t\tfor (const starter of template.starters) {\n\t\t\tconst neuronDir = join(regionDir, starter);\n\t\t\tmkdirSync(neuronDir, { recursive: true });\n\t\t\twriteFileSync(join(neuronDir, '1.neuron'), '', 'utf8');\n\t\t}\n\t}\n\n\t// Create _agents inbox\n\tmkdirSync(join(brainPath, '_agents', 'global_inbox'), { recursive: true });\n\n\tconsole.log(`\\u{1F9E0} Brain initialized at ${brainPath}`);\n\tconsole.log(` 7 regions created: ${REGIONS.join(', ')}`);\n\tconsole.log('');\n\tconsole.log(' Next steps:');\n\tconsole.log(` hebbian grow brainstem/NO_your_rule --brain ${brainPath}`);\n\tconsole.log(` hebbian emit claude --brain ${brainPath}`);\n}\n","// hebbian — Brain Filesystem Scanner\n//\n// Walks the brain directory tree and builds a structured representation.\n// Folders = neurons. Files = firing traces. Paths = sentences.\n//\n// Scan order follows subsumption priority (P0 brainstem → P6 prefrontal).\n// Only recognizes the 7 canonical region names at the top level.\n\nimport { readdirSync, statSync, readFileSync, existsSync } from 'node:fs';\nimport { join, relative, sep } from 'node:path';\nimport { REGIONS, REGION_PRIORITY, MAX_DEPTH } from './constants';\nimport type { Neuron, Region, Brain } from './types';\n\n/**\n * Scan a brain directory and return all regions with their neurons.\n */\nexport function scanBrain(brainRoot: string): Brain {\n\tconst regions: Region[] = [];\n\n\tfor (const regionName of REGIONS) {\n\t\tconst regionPath = join(brainRoot, regionName);\n\t\tif (!existsSync(regionPath)) {\n\t\t\tregions.push({\n\t\t\t\tname: regionName,\n\t\t\t\tpriority: REGION_PRIORITY[regionName],\n\t\t\t\tpath: regionPath,\n\t\t\t\tneurons: [],\n\t\t\t\taxons: [],\n\t\t\t\thasBomb: false,\n\t\t\t});\n\t\t\tcontinue;\n\t\t}\n\n\t\tconst neurons = walkRegion(regionPath, regionPath, 0);\n\t\tconst axons = readAxons(regionPath);\n\t\tconst hasBomb = neurons.some((n) => n.hasBomb);\n\n\t\tregions.push({\n\t\t\tname: regionName,\n\t\t\tpriority: REGION_PRIORITY[regionName],\n\t\t\tpath: regionPath,\n\t\t\tneurons,\n\t\t\taxons,\n\t\t\thasBomb,\n\t\t});\n\t}\n\n\treturn { root: brainRoot, regions };\n}\n\n/**\n * Recursively walk a region directory and collect neurons.\n * A neuron is any directory that contains at least one trace file\n * (*.neuron, *.contra, *.dormant, bomb.neuron).\n */\nfunction walkRegion(dir: string, regionRoot: string, depth: number): Neuron[] {\n\tif (depth > MAX_DEPTH) return [];\n\n\tconst neurons: Neuron[] = [];\n\tlet entries;\n\n\ttry {\n\t\tentries = readdirSync(dir, { withFileTypes: true });\n\t} catch {\n\t\treturn [];\n\t}\n\n\t// Parse trace files in this directory\n\tlet counter = 0;\n\tlet contra = 0;\n\tlet dopamine = 0;\n\tlet hasBomb = false;\n\tlet hasMemory = false;\n\tlet isDormant = false;\n\tlet modTime = new Date(0);\n\tlet hasTraceFile = false;\n\n\tfor (const entry of entries) {\n\t\tif (entry.name.startsWith('_')) continue;\n\n\t\tif (entry.isFile()) {\n\t\t\tconst name = entry.name;\n\n\t\t\t// N.neuron — excitatory counter\n\t\t\tif (name.endsWith('.neuron') && !name.startsWith('dopamine') && !name.startsWith('memory') && name !== 'bomb.neuron') {\n\t\t\t\tconst n = parseInt(name, 10);\n\t\t\t\tif (!isNaN(n) && n > counter) {\n\t\t\t\t\tcounter = n;\n\t\t\t\t\thasTraceFile = true;\n\t\t\t\t\ttry {\n\t\t\t\t\t\tconst st = statSync(join(dir, name));\n\t\t\t\t\t\tif (st.mtime > modTime) modTime = st.mtime;\n\t\t\t\t\t} catch {}\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// N.contra — inhibitory counter\n\t\t\tif (name.endsWith('.contra')) {\n\t\t\t\tconst n = parseInt(name, 10);\n\t\t\t\tif (!isNaN(n) && n > contra) {\n\t\t\t\t\tcontra = n;\n\t\t\t\t\thasTraceFile = true;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// dopamineN.neuron — reward signal\n\t\t\tif (name.startsWith('dopamine') && name.endsWith('.neuron')) {\n\t\t\t\tconst n = parseInt(name.replace('dopamine', ''), 10);\n\t\t\t\tif (!isNaN(n) && n > dopamine) {\n\t\t\t\t\tdopamine = n;\n\t\t\t\t\thasTraceFile = true;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// bomb.neuron — circuit breaker\n\t\t\tif (name === 'bomb.neuron') {\n\t\t\t\thasBomb = true;\n\t\t\t\thasTraceFile = true;\n\t\t\t}\n\n\t\t\t// memoryN.neuron — memory signal\n\t\t\tif (name.startsWith('memory') && name.endsWith('.neuron')) {\n\t\t\t\thasMemory = true;\n\t\t\t\thasTraceFile = true;\n\t\t\t}\n\n\t\t\t// *.dormant — dormancy marker\n\t\t\tif (name.endsWith('.dormant')) {\n\t\t\t\tisDormant = true;\n\t\t\t\thasTraceFile = true;\n\t\t\t}\n\t\t}\n\t}\n\n\t// If this directory has trace files, it's a neuron\n\tif (hasTraceFile) {\n\t\tconst relPath = relative(regionRoot, dir) || '.';\n\t\tconst folderName = dir.split(sep).pop() || '';\n\t\tconst total = counter + contra + dopamine;\n\t\tconst intensity = counter - contra + dopamine;\n\t\tconst polarity = total > 0 ? intensity / total : 0;\n\n\t\tneurons.push({\n\t\t\tname: folderName,\n\t\t\tpath: relPath,\n\t\t\tfullPath: dir,\n\t\t\tcounter,\n\t\t\tcontra,\n\t\t\tdopamine,\n\t\t\tintensity,\n\t\t\tpolarity: Math.round(polarity * 100) / 100,\n\t\t\thasBomb,\n\t\t\thasMemory,\n\t\t\tisDormant,\n\t\t\tdepth,\n\t\t\tmodTime,\n\t\t});\n\t}\n\n\t// Recurse into subdirectories\n\tfor (const entry of entries) {\n\t\tif (entry.name.startsWith('_') || entry.name.startsWith('.')) continue;\n\t\tif (entry.isDirectory()) {\n\t\t\tconst subNeurons = walkRegion(join(dir, entry.name), regionRoot, depth + 1);\n\t\t\tneurons.push(...subNeurons);\n\t\t}\n\t}\n\n\treturn neurons;\n}\n\n/**\n * Read .axon file from a region directory.\n */\nfunction readAxons(regionPath: string): string[] {\n\tconst axonPath = join(regionPath, '.axon');\n\tif (!existsSync(axonPath)) return [];\n\ttry {\n\t\tconst content = readFileSync(axonPath, 'utf8').trim();\n\t\treturn content.split(/[\\n,]+/).map((s: string) => s.trim()).filter(Boolean);\n\t} catch {\n\t\treturn [];\n\t}\n}\n","// hebbian — Subsumption Cascade Engine\n//\n// Implements Brooks' subsumption architecture:\n// - Lower priority (P0) always suppresses higher priority (P6)\n// - bomb.neuron in any region halts all downstream regions\n// - Dormant neurons are excluded from activation counts\n//\n// Cascade flow:\n// P0 brainstem → P1 limbic → P2 hippocampus → P3 sensors → P4 cortex → P5 ego → P6 prefrontal\n// If bomb at P(n), all P(n+1)→P6 are BLOCKED.\n\nimport type { Brain, Region, SubsumptionResult } from './types';\n\n/**\n * Run the subsumption cascade on a scanned brain.\n */\nexport function runSubsumption(brain: Brain): SubsumptionResult {\n\tconst activeRegions: Region[] = [];\n\tconst blockedRegions: Region[] = [];\n\tlet bombSource = '';\n\tlet firedNeurons = 0;\n\tlet totalNeurons = 0;\n\tlet totalCounter = 0;\n\tlet blocked = false;\n\n\tfor (const region of brain.regions) {\n\t\ttotalNeurons += region.neurons.length;\n\n\t\tif (blocked) {\n\t\t\tblockedRegions.push(region);\n\t\t\tcontinue;\n\t\t}\n\n\t\tif (region.hasBomb) {\n\t\t\tbombSource = region.name;\n\t\t\tblockedRegions.push(region);\n\t\t\tblocked = true;\n\t\t\tcontinue;\n\t\t}\n\n\t\tactiveRegions.push(region);\n\n\t\tfor (const neuron of region.neurons) {\n\t\t\tif (!neuron.isDormant) {\n\t\t\t\tfiredNeurons++;\n\t\t\t\ttotalCounter += neuron.counter;\n\t\t\t}\n\t\t}\n\t}\n\n\treturn {\n\t\tactiveRegions,\n\t\tblockedRegions,\n\t\tbombSource,\n\t\tfiredNeurons,\n\t\ttotalNeurons,\n\t\ttotalCounter,\n\t};\n}\n","// hebbian — 3-Tier Emit System + Multi-Target Output\n//\n// Tier 1: Bootstrap (~500 tokens) — auto-loaded by AI (CLAUDE.md, .cursorrules, etc.)\n// Tier 2: _index.md — brain overview (AI reads at conversation start)\n// Tier 3: {region}/_rules.md — per-region detail (AI reads on demand)\n//\n// Multi-target: claude, cursor, gemini, copilot, generic, all\n\nimport { existsSync, readFileSync, writeFileSync, mkdirSync } from 'node:fs';\nimport { join, dirname } from 'node:path';\nimport { scanBrain } from './scanner';\nimport { runSubsumption } from './subsumption';\nimport {\n\tREGIONS, REGION_ICONS, REGION_KO, EMIT_TARGETS,\n\tEMIT_THRESHOLD, SPOTLIGHT_DAYS, MARKER_START, MARKER_END,\n} from './constants';\nimport type { RegionName } from './constants';\nimport type { Neuron, Region, Brain, SubsumptionResult } from './types';\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// TIER 1: Bootstrap (~500 tokens)\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Generate Tier 1 bootstrap content.\n */\nexport function emitBootstrap(result: SubsumptionResult, brain: Brain): string {\n\tconst lines: string[] = [];\n\tconst now = new Date().toISOString().replace(/\\.\\d+Z$/, '');\n\n\tlines.push(MARKER_START);\n\tlines.push(`<!-- Generated: ${now} -->`);\n\tlines.push('<!-- Axiom: Folder=Neuron | File=Trace | Path=Sentence -->');\n\tlines.push(`<!-- Active: ${result.firedNeurons}/${result.totalNeurons} neurons | Total activation: ${result.totalCounter} -->`);\n\tlines.push('');\n\n\t// Circuit breaker\n\tif (result.bombSource) {\n\t\tlines.push(`## \\u{1F6A8} CIRCUIT BREAKER: ${result.bombSource}`);\n\t\tlines.push('**ALL OPERATIONS HALTED. REPAIR REQUIRED.**');\n\t\tlines.push('');\n\t\tlines.push(MARKER_END);\n\t\treturn lines.join('\\n');\n\t}\n\n\tlines.push('## hebbian Active Rules');\n\tlines.push('');\n\n\t// Persona (ego region)\n\tlines.push(`### ${REGION_ICONS.ego} Persona`);\n\tfor (const region of result.activeRegions) {\n\t\tif (region.name === 'ego') {\n\t\t\tconst top = sortedActive(region.neurons, 10);\n\t\t\tfor (const n of top) {\n\t\t\t\tlines.push(`- ${pathToSentence(n.path)}`);\n\t\t\t}\n\t\t\tbreak;\n\t\t}\n\t}\n\tlines.push('');\n\n\t// Subsumption cascade\n\tlines.push('### \\u{1F517} Subsumption Cascade');\n\tlines.push('```');\n\tlines.push('brainstem \\u2190\\u2192 limbic \\u2190\\u2192 hippocampus \\u2190\\u2192 sensors \\u2190\\u2192 cortex \\u2190\\u2192 ego \\u2190\\u2192 prefrontal');\n\tlines.push(' (P0) (P1) (P2) (P3) (P4) (P5) (P6)');\n\tlines.push('```');\n\tlines.push('Lower P always overrides higher P. bomb = full stop.');\n\tlines.push('');\n\n\t// TOP 5 brainstem rules\n\tlines.push(`### ${REGION_ICONS.brainstem} Core Directives TOP 5`);\n\tfor (const region of result.activeRegions) {\n\t\tif (region.name === 'brainstem') {\n\t\t\tconst top = sortedActive(region.neurons, 5);\n\t\t\ttop.forEach((n, i) => {\n\t\t\t\tlines.push(`${i + 1}. **${pathToSentence(n.path)}**`);\n\t\t\t});\n\t\t\tbreak;\n\t\t}\n\t}\n\tlines.push('');\n\n\t// Active regions summary\n\tlines.push('### Active Regions');\n\tlines.push('| Region | Neurons | Activation |');\n\tlines.push('|--------|---------|------------|');\n\tfor (const region of result.activeRegions) {\n\t\tconst active = region.neurons.filter((n) => !n.isDormant);\n\t\tconst activation = active.reduce((sum, n) => sum + n.counter, 0);\n\t\tconst icon = REGION_ICONS[region.name as RegionName] || '';\n\t\tlines.push(`| ${icon} ${region.name} | ${active.length} | ${activation} |`);\n\t}\n\tlines.push('');\n\tlines.push(MARKER_END);\n\n\treturn lines.join('\\n');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// TIER 2: Index (_index.md)\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Generate Tier 2 brain index content.\n */\nexport function emitIndex(result: SubsumptionResult, brain: Brain): string {\n\tconst lines: string[] = [];\n\tlines.push('# hebbian Brain Index');\n\tlines.push('');\n\tlines.push(`> ${result.firedNeurons} active / ${result.totalNeurons} total neurons | activation: ${result.totalCounter}`);\n\tlines.push('');\n\n\tif (result.bombSource) {\n\t\tlines.push(`## \\u{1F6A8} CIRCUIT BREAKER: ${result.bombSource}`);\n\t\tlines.push('');\n\t\treturn lines.join('\\n');\n\t}\n\n\t// Top 10 neurons by counter\n\tconst allNeurons = result.activeRegions.flatMap((r) =>\n\t\tr.neurons.filter((n) => !n.isDormant && n.counter >= EMIT_THRESHOLD),\n\t);\n\tallNeurons.sort((a, b) => b.counter - a.counter);\n\n\tlines.push('## Top 10 Active Neurons');\n\tlines.push('| # | Path | Counter | Strength |');\n\tlines.push('|---|------|---------|----------|');\n\tfor (const n of allNeurons.slice(0, 10)) {\n\t\tconst strength = n.counter >= 10 ? '\\u{1F534}' : n.counter >= 5 ? '\\u{1F7E1}' : '\\u26AA';\n\t\tlines.push(`| ${allNeurons.indexOf(n) + 1} | ${n.path} | ${n.counter} | ${strength} |`);\n\t}\n\tlines.push('');\n\n\t// Spotlight: new neurons (< SPOTLIGHT_DAYS old, counter < EMIT_THRESHOLD)\n\tconst cutoff = new Date(Date.now() - SPOTLIGHT_DAYS * 24 * 60 * 60 * 1000);\n\tconst spotlightNeurons = result.activeRegions.flatMap((r) =>\n\t\tr.neurons.filter((n) => !n.isDormant && n.counter < EMIT_THRESHOLD && n.modTime > cutoff),\n\t);\n\tif (spotlightNeurons.length > 0) {\n\t\tlines.push('## Spotlight (Probation)');\n\t\tfor (const n of spotlightNeurons) {\n\t\t\tlines.push(`- ${n.path} (${n.counter}) — new`);\n\t\t}\n\t\tlines.push('');\n\t}\n\n\t// Per-region summary\n\tlines.push('## Regions');\n\tlines.push('| Region | Active | Dormant | Activation | Rules |');\n\tlines.push('|--------|--------|---------|------------|-------|');\n\tfor (const region of result.activeRegions) {\n\t\tconst active = region.neurons.filter((n) => !n.isDormant);\n\t\tconst dormant = region.neurons.filter((n) => n.isDormant);\n\t\tconst activation = active.reduce((sum, n) => sum + n.counter, 0);\n\t\tconst icon = REGION_ICONS[region.name as RegionName] || '';\n\t\tlines.push(`| ${icon} ${region.name} | ${active.length} | ${dormant.length} | ${activation} | [_rules.md](${region.name}/_rules.md) |`);\n\t}\n\tlines.push('');\n\n\treturn lines.join('\\n');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// TIER 3: Per-region rules ({region}/_rules.md)\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Generate Tier 3 per-region rules content.\n */\nexport function emitRegionRules(region: Region): string {\n\tconst icon = REGION_ICONS[region.name as RegionName] || '';\n\tconst ko = REGION_KO[region.name as RegionName] || '';\n\tconst active = region.neurons.filter((n) => !n.isDormant);\n\tconst dormant = region.neurons.filter((n) => n.isDormant);\n\tconst activation = active.reduce((sum, n) => sum + n.counter, 0);\n\n\tconst lines: string[] = [];\n\tlines.push(`# ${icon} ${region.name} (${ko})`);\n\tlines.push(`> Active: ${active.length} | Dormant: ${dormant.length} | Activation: ${activation}`);\n\tlines.push('');\n\n\t// Axons\n\tif (region.axons.length > 0) {\n\t\tlines.push('## Connections');\n\t\tfor (const axon of region.axons) {\n\t\t\tlines.push(`- \\u2194 ${axon}`);\n\t\t}\n\t\tlines.push('');\n\t}\n\n\t// Neuron tree\n\tif (active.length > 0) {\n\t\tlines.push('## Rules');\n\t\tconst sorted = [...active].sort((a, b) => b.counter - a.counter);\n\t\tfor (const n of sorted) {\n\t\t\tconst indent = ' '.repeat(Math.min(n.depth, 4));\n\t\t\tconst prefix = strengthPrefix(n.counter);\n\t\t\tconst signals: string[] = [];\n\t\t\tif (n.dopamine > 0) signals.push(`\\u{1F7E2}+${n.dopamine}`);\n\t\t\tif (n.hasBomb) signals.push('\\u{1F4A3}');\n\t\t\tif (n.hasMemory) signals.push('\\u{1F4BE}');\n\t\t\tconst signalStr = signals.length > 0 ? ` ${signals.join(' ')}` : '';\n\t\t\tlines.push(`${indent}- ${prefix}${pathToSentence(n.path)} (${n.counter})${signalStr}`);\n\t\t}\n\t\tlines.push('');\n\t}\n\n\t// Dormant section\n\tif (dormant.length > 0) {\n\t\tlines.push('## Dormant');\n\t\tfor (const n of dormant) {\n\t\t\tlines.push(`- ~~${pathToSentence(n.path)} (${n.counter})~~`);\n\t\t}\n\t\tlines.push('');\n\t}\n\n\treturn lines.join('\\n');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// MULTI-TARGET OUTPUT\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Emit rules to a specific target or all targets.\n */\nexport function emitToTarget(brainRoot: string, target: string): void {\n\tconst brain = scanBrain(brainRoot);\n\tconst result = runSubsumption(brain);\n\tconst content = emitBootstrap(result, brain);\n\n\tif (target === 'all') {\n\t\tfor (const [name, filePath] of Object.entries(EMIT_TARGETS)) {\n\t\t\twriteTarget(filePath, content);\n\t\t\tconsole.log(`\\u{1F4E4} emitted: ${name} → ${filePath}`);\n\t\t}\n\t} else if (EMIT_TARGETS[target]) {\n\t\twriteTarget(EMIT_TARGETS[target], content);\n\t\tconsole.log(`\\u{1F4E4} emitted: ${target} → ${EMIT_TARGETS[target]}`);\n\t} else {\n\t\tthrow new Error(`Unknown target: ${target}. Valid: ${Object.keys(EMIT_TARGETS).join(', ')}, all`);\n\t}\n\n\t// Always write tier 2 + tier 3 into the brain\n\twriteAllTiers(brainRoot, result, brain);\n}\n\n/**\n * Write all 3 tiers into the brain directory.\n */\nexport function writeAllTiers(brainRoot: string, result: SubsumptionResult, brain: Brain): void {\n\t// Tier 2: _index.md\n\tconst indexContent = emitIndex(result, brain);\n\twriteFileSync(join(brainRoot, '_index.md'), indexContent, 'utf8');\n\n\t// Tier 3: per-region _rules.md\n\tfor (const region of result.activeRegions) {\n\t\tif (existsSync(region.path)) {\n\t\t\tconst rulesContent = emitRegionRules(region);\n\t\t\twriteFileSync(join(region.path, '_rules.md'), rulesContent, 'utf8');\n\t\t}\n\t}\n}\n\n/**\n * Write content to a target file, using marker-based injection if file already exists.\n */\nfunction writeTarget(filePath: string, content: string): void {\n\tconst dir = dirname(filePath);\n\tif (dir !== '.' && !existsSync(dir)) {\n\t\tmkdirSync(dir, { recursive: true });\n\t}\n\n\tif (existsSync(filePath)) {\n\t\t// Marker-based injection: replace between markers, preserve surrounding content\n\t\tconst existing = readFileSync(filePath, 'utf8');\n\t\tconst startIdx = existing.indexOf(MARKER_START);\n\t\tconst endIdx = existing.indexOf(MARKER_END);\n\n\t\tif (startIdx !== -1 && endIdx !== -1) {\n\t\t\tconst before = existing.slice(0, startIdx);\n\t\t\tconst after = existing.slice(endIdx + MARKER_END.length);\n\t\t\twriteFileSync(filePath, before + content + after, 'utf8');\n\t\t\treturn;\n\t\t}\n\t}\n\n\twriteFileSync(filePath, content, 'utf8');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// DIAGNOSTICS (for CLI `hebbian diag` / `hebbian stats`)\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Print brain diagnostics to stdout.\n */\nexport function printDiag(brain: Brain, result: SubsumptionResult): void {\n\tconsole.log('');\n\tconsole.log(`\\u{1F9E0} hebbian Brain Diagnostics`);\n\tconsole.log(` Root: ${brain.root}`);\n\tconsole.log(` Neurons: ${result.firedNeurons} active / ${result.totalNeurons} total`);\n\tconsole.log(` Activation: ${result.totalCounter}`);\n\tif (result.bombSource) {\n\t\tconsole.log(` \\u{1F4A3} BOMB: ${result.bombSource} — cascade halted!`);\n\t}\n\tconsole.log('');\n\n\tfor (const region of brain.regions) {\n\t\tconst icon = REGION_ICONS[region.name as RegionName] || '';\n\t\tconst active = region.neurons.filter((n) => !n.isDormant);\n\t\tconst dormant = region.neurons.filter((n) => n.isDormant);\n\t\tconst activation = active.reduce((sum, n) => sum + n.counter, 0);\n\t\tconst isBlocked = result.blockedRegions.some((r) => r.name === region.name);\n\t\tconst status = region.hasBomb ? '\\u{1F4A3} BOMB' : isBlocked ? '\\u{1F6AB} BLOCKED' : '\\u2705 ACTIVE';\n\n\t\tconsole.log(` ${icon} ${region.name} [${status}]`);\n\t\tconsole.log(` neurons: ${active.length} active, ${dormant.length} dormant | activation: ${activation}`);\n\n\t\tif (region.axons.length > 0) {\n\t\t\tconsole.log(` axons: ${region.axons.join(', ')}`);\n\t\t}\n\n\t\tconst top3 = sortedActive(region.neurons, 3);\n\t\tfor (const n of top3) {\n\t\t\tconsole.log(` \\u251C ${n.path} (${n.counter})`);\n\t\t}\n\t}\n\tconsole.log('');\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// HELPERS\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/** Convert a neuron relative path to a human-readable sentence. */\nfunction pathToSentence(path: string): string {\n\treturn path.replace(/\\//g, ' > ').replace(/_/g, ' ');\n}\n\n/** Sort non-dormant neurons by counter (descending), take first N. */\nfunction sortedActive(neurons: Neuron[], n: number): Neuron[] {\n\treturn [...neurons]\n\t\t.filter((neuron) => !neuron.isDormant)\n\t\t.sort((a, b) => b.counter - a.counter)\n\t\t.slice(0, n);\n}\n\n/** Strength prefix based on counter value. */\nfunction strengthPrefix(counter: number): string {\n\tif (counter >= 10) return '**[ABSOLUTE]** ';\n\tif (counter >= 5) return '**[MUST]** ';\n\treturn '';\n}\n","// hebbian — Fire Neuron (increment counter)\n//\n// Firing = reinforcing a synaptic pathway.\n// The counter file is renamed: N.neuron → (N+1).neuron\n\nimport { readdirSync, renameSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';\nimport { join } from 'node:path';\n\n/**\n * Increment a neuron's counter by 1.\n * If the neuron doesn't exist, auto-grows it with counter=1.\n */\nexport function fireNeuron(brainRoot: string, neuronPath: string): number {\n\tconst fullPath = join(brainRoot, neuronPath);\n\n\t// Auto-grow if neuron doesn't exist\n\tif (!existsSync(fullPath)) {\n\t\tmkdirSync(fullPath, { recursive: true });\n\t\twriteFileSync(join(fullPath, '1.neuron'), '', 'utf8');\n\t\tconsole.log(`\\u{1F331} grew + fired: ${neuronPath} (1)`);\n\t\treturn 1;\n\t}\n\n\t// Find current counter\n\tconst current = getCurrentCounter(fullPath);\n\tconst newCounter = current + 1;\n\n\t// Rename: N.neuron → (N+1).neuron\n\tif (current > 0) {\n\t\trenameSync(join(fullPath, `${current}.neuron`), join(fullPath, `${newCounter}.neuron`));\n\t} else {\n\t\twriteFileSync(join(fullPath, `${newCounter}.neuron`), '', 'utf8');\n\t}\n\n\tconsole.log(`\\u{1F525} fired: ${neuronPath} (${current} → ${newCounter})`);\n\treturn newCounter;\n}\n\n/**\n * Get current counter value from the highest N.neuron file.\n */\nexport function getCurrentCounter(dir: string): number {\n\tlet max = 0;\n\ttry {\n\t\tfor (const entry of readdirSync(dir)) {\n\t\t\tif (entry.endsWith('.neuron') && !entry.startsWith('dopamine') && !entry.startsWith('memory') && entry !== 'bomb.neuron') {\n\t\t\t\tconst n = parseInt(entry, 10);\n\t\t\t\tif (!isNaN(n) && n > max) max = n;\n\t\t\t}\n\t\t}\n\t} catch {}\n\treturn max;\n}\n","// hebbian — Tokenizer, Stemmer, Jaccard Similarity\n//\n// Used by growNeuron() to detect similar existing neurons and merge\n// instead of duplicating. Implements synaptic consolidation.\n//\n// \"Neurons that fire together, wire together.\" — if two folder names\n// express the same concept, fire the existing one instead of creating a duplicate.\n\n/**\n * Tokenize a neuron name into stemmed words.\n * Splits on underscores, hyphens, spaces, and CamelCase boundaries.\n */\nexport function tokenize(name: string): string[] {\n\treturn name\n\t\t.replace(/([a-z])([A-Z])/g, '$1_$2') // camelCase → snake\n\t\t.replace(/[_\\-\\s]+/g, ' ') // normalize separators\n\t\t.toLowerCase()\n\t\t.split(' ')\n\t\t.map(stem)\n\t\t.filter((t) => t.length > 1); // drop single chars\n}\n\n/**\n * Simple suffix stemmer — removes common English suffixes.\n * Not a full Porter stemmer, but sufficient for Jaccard comparison.\n */\nexport function stem(word: string): string {\n\tconst suffixes = ['ing', 'tion', 'sion', 'ness', 'ment', 'able', 'ible', 'ful', 'less', 'ous', 'ive', 'ity', 'ies', 'ed', 'er', 'es', 'ly', 'al', 'en'];\n\tfor (const suffix of suffixes) {\n\t\tif (word.length > suffix.length + 2 && word.endsWith(suffix)) {\n\t\t\treturn word.slice(0, -suffix.length);\n\t\t}\n\t}\n\treturn word;\n}\n\n/**\n * Compute Jaccard similarity between two token sets.\n * |A ∩ B| / |A ∪ B|\n */\nexport function jaccardSimilarity(a: string[], b: string[]): number {\n\tif (a.length === 0 && b.length === 0) return 1.0;\n\tif (a.length === 0 || b.length === 0) return 0.0;\n\n\tconst setA = new Set(a);\n\tconst setB = new Set(b);\n\tlet intersection = 0;\n\n\tfor (const item of setA) {\n\t\tif (setB.has(item)) intersection++;\n\t}\n\n\tconst union = new Set([...setA, ...setB]).size;\n\treturn intersection / union;\n}\n","// hebbian — Grow Neuron (with synaptic consolidation)\n//\n// Creates a new neuron (folder + 1.neuron).\n// Before creating, checks for similar existing neurons via Jaccard similarity.\n// If a match is found (>= 0.6), fires the existing neuron instead.\n// This prevents duplication and strengthens existing pathways.\n//\n// \"Consolidation over duplication.\" — Hebb's principle.\n\nimport { mkdirSync, writeFileSync, existsSync, readdirSync } from 'node:fs';\nimport { join, relative } from 'node:path';\nimport { REGIONS, JACCARD_THRESHOLD } from './constants';\nimport { tokenize, jaccardSimilarity } from './similarity';\nimport { fireNeuron } from './fire';\n\nexport interface GrowResult {\n\taction: 'grew' | 'fired';\n\tpath: string;\n\tcounter: number;\n}\n\n/**\n * Grow a new neuron at the given path.\n * If a similar neuron already exists in the same region, fires it instead.\n */\nexport function growNeuron(brainRoot: string, neuronPath: string): GrowResult {\n\tconst fullPath = join(brainRoot, neuronPath);\n\n\t// If neuron already exists, just fire it\n\tif (existsSync(fullPath)) {\n\t\tconst counter = fireNeuron(brainRoot, neuronPath);\n\t\treturn { action: 'fired', path: neuronPath, counter };\n\t}\n\n\t// Extract region name and leaf name\n\tconst parts = neuronPath.split('/');\n\tconst regionName = parts[0]!;\n\tif (!(REGIONS as readonly string[]).includes(regionName)) {\n\t\tthrow new Error(`Invalid region: ${regionName}. Valid: ${REGIONS.join(', ')}`);\n\t}\n\n\tconst leafName = parts[parts.length - 1]!;\n\tconst newTokens = tokenize(leafName);\n\n\t// Search for similar neurons in the same region\n\tconst regionPath = join(brainRoot, regionName);\n\tif (existsSync(regionPath)) {\n\t\tconst match = findSimilar(regionPath, regionPath, newTokens);\n\t\tif (match) {\n\t\t\tconst matchRelPath = regionName + '/' + relative(regionPath, match);\n\t\t\tconsole.log(`\\u{1F504} consolidation: \"${neuronPath}\" ≈ \"${matchRelPath}\" (firing existing)`);\n\t\t\tconst counter = fireNeuron(brainRoot, matchRelPath);\n\t\t\treturn { action: 'fired', path: matchRelPath, counter };\n\t\t}\n\t}\n\n\t// No match — create new neuron\n\tmkdirSync(fullPath, { recursive: true });\n\twriteFileSync(join(fullPath, '1.neuron'), '', 'utf8');\n\tconsole.log(`\\u{1F331} grew: ${neuronPath} (1)`);\n\treturn { action: 'grew', path: neuronPath, counter: 1 };\n}\n\n/**\n * Walk a region and find a neuron whose name is similar to the given tokens.\n */\nfunction findSimilar(dir: string, regionRoot: string, targetTokens: string[]): string | null {\n\tlet entries;\n\ttry {\n\t\tentries = readdirSync(dir, { withFileTypes: true });\n\t} catch {\n\t\treturn null;\n\t}\n\n\t// Check if this directory has .neuron files (is a neuron)\n\tconst hasNeuron = entries.some((e) => e.isFile() && e.name.endsWith('.neuron'));\n\tif (hasNeuron) {\n\t\tconst folderName = dir.split('/').pop() || '';\n\t\tconst existingTokens = tokenize(folderName);\n\t\tconst similarity = jaccardSimilarity(targetTokens, existingTokens);\n\t\tif (similarity >= JACCARD_THRESHOLD) {\n\t\t\treturn dir;\n\t\t}\n\t}\n\n\t// Recurse into subdirectories\n\tfor (const entry of entries) {\n\t\tif (entry.name.startsWith('_') || entry.name.startsWith('.')) continue;\n\t\tif (entry.isDirectory()) {\n\t\t\tconst match = findSimilar(join(dir, entry.name), regionRoot, targetTokens);\n\t\t\tif (match) return match;\n\t\t}\n\t}\n\n\treturn null;\n}\n","// hebbian — Rollback Neuron (decrement counter)\n//\n// Undo a firing. Counter cannot go below 1 (minimum activation).\n\nimport { renameSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { getCurrentCounter } from './fire';\n\n/**\n * Decrement a neuron's counter by 1. Minimum counter is 1.\n */\nexport function rollbackNeuron(brainRoot: string, neuronPath: string): number {\n\tconst fullPath = join(brainRoot, neuronPath);\n\tconst current = getCurrentCounter(fullPath);\n\n\tif (current === 0) {\n\t\tthrow new Error(`Neuron not found: ${neuronPath}`);\n\t}\n\n\tif (current <= 1) {\n\t\tthrow new Error(`Counter already at minimum (1): ${neuronPath}`);\n\t}\n\n\tconst newCounter = current - 1;\n\trenameSync(join(fullPath, `${current}.neuron`), join(fullPath, `${newCounter}.neuron`));\n\n\tconsole.log(`\\u{23EA} rollback: ${neuronPath} (${current} → ${newCounter})`);\n\treturn newCounter;\n}\n","// hebbian — Signal Neuron (dopamine / bomb / memory)\n//\n// Signals are additional trace files placed in a neuron directory:\n// dopamineN.neuron — reward signal (positive reinforcement)\n// bomb.neuron — circuit breaker (halts downstream regions)\n// memoryN.neuron — memory marker (episodic recording)\n\nimport { writeFileSync, existsSync, readdirSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { SIGNAL_TYPES } from './constants';\nimport type { SignalType } from './constants';\n\n/**\n * Add a signal to a neuron.\n */\nexport function signalNeuron(brainRoot: string, neuronPath: string, signalType: SignalType): void {\n\tif (!SIGNAL_TYPES.includes(signalType)) {\n\t\tthrow new Error(`Invalid signal type: ${signalType}. Valid: ${SIGNAL_TYPES.join(', ')}`);\n\t}\n\n\tconst fullPath = join(brainRoot, neuronPath);\n\tif (!existsSync(fullPath)) {\n\t\tthrow new Error(`Neuron not found: ${neuronPath}`);\n\t}\n\n\tswitch (signalType) {\n\t\tcase 'bomb': {\n\t\t\twriteFileSync(join(fullPath, 'bomb.neuron'), '', 'utf8');\n\t\t\tconsole.log(`\\u{1F4A3} bomb planted: ${neuronPath}`);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'dopamine': {\n\t\t\tconst level = getNextSignalLevel(fullPath, 'dopamine');\n\t\t\twriteFileSync(join(fullPath, `dopamine${level}.neuron`), '', 'utf8');\n\t\t\tconsole.log(`\\u{1F7E2} dopamine +${level}: ${neuronPath}`);\n\t\t\tbreak;\n\t\t}\n\t\tcase 'memory': {\n\t\t\tconst level = getNextSignalLevel(fullPath, 'memory');\n\t\t\twriteFileSync(join(fullPath, `memory${level}.neuron`), '', 'utf8');\n\t\t\tconsole.log(`\\u{1F4BE} memory +${level}: ${neuronPath}`);\n\t\t\tbreak;\n\t\t}\n\t}\n}\n\n/**\n * Get the next signal level (current max + 1).\n */\nfunction getNextSignalLevel(dir: string, prefix: string): number {\n\tlet max = 0;\n\ttry {\n\t\tfor (const entry of readdirSync(dir)) {\n\t\t\tif (entry.startsWith(prefix) && entry.endsWith('.neuron')) {\n\t\t\t\tconst n = parseInt(entry.replace(prefix, ''), 10);\n\t\t\t\tif (!isNaN(n) && n > max) max = n;\n\t\t\t}\n\t\t}\n\t} catch {}\n\treturn max + 1;\n}\n","// hebbian — Decay (dormancy sweep)\n//\n// Neurons that haven't been touched in N days are marked dormant.\n// Dormancy = *.dormant file in the neuron directory.\n// Dormant neurons are excluded from emission and activation counts.\n//\n// \"Most neurons die. Only the repeatedly fired ones survive.\" — Natural selection on OS.\n\nimport { readdirSync, statSync, writeFileSync, existsSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { REGIONS, MAX_DEPTH } from './constants';\n\nexport interface DecayResult {\n\tscanned: number;\n\tdecayed: number;\n}\n\n/**\n * Sweep the brain and mark inactive neurons as dormant.\n */\nexport function runDecay(brainRoot: string, days: number): DecayResult {\n\tconst threshold = Date.now() - days * 24 * 60 * 60 * 1000;\n\tlet scanned = 0;\n\tlet decayed = 0;\n\n\tfor (const regionName of REGIONS) {\n\t\tconst regionPath = join(brainRoot, regionName);\n\t\tif (!existsSync(regionPath)) continue;\n\t\tconst result = decayWalk(regionPath, threshold, 0);\n\t\tscanned += result.scanned;\n\t\tdecayed += result.decayed;\n\t}\n\n\tconsole.log(`\\u{1F4A4} decay: scanned ${scanned} neurons, decayed ${decayed} (>${days} days inactive)`);\n\treturn { scanned, decayed };\n}\n\nfunction decayWalk(dir: string, threshold: number, depth: number): DecayResult {\n\tif (depth > MAX_DEPTH) return { scanned: 0, decayed: 0 };\n\n\tlet scanned = 0;\n\tlet decayed = 0;\n\tlet entries;\n\n\ttry {\n\t\tentries = readdirSync(dir, { withFileTypes: true });\n\t} catch {\n\t\treturn { scanned: 0, decayed: 0 };\n\t}\n\n\t// Check if this directory is a neuron (has .neuron files)\n\tlet hasNeuronFile = false;\n\tlet isDormant = false;\n\tlet latestMod = 0;\n\n\tfor (const entry of entries) {\n\t\tif (entry.isFile()) {\n\t\t\tif (entry.name.endsWith('.neuron')) {\n\t\t\t\thasNeuronFile = true;\n\t\t\t\ttry {\n\t\t\t\t\tconst st = statSync(join(dir, entry.name));\n\t\t\t\t\tif (st.mtimeMs > latestMod) latestMod = st.mtimeMs;\n\t\t\t\t} catch {}\n\t\t\t}\n\t\t\tif (entry.name.endsWith('.dormant')) {\n\t\t\t\tisDormant = true;\n\t\t\t}\n\t\t}\n\t}\n\n\tif (hasNeuronFile) {\n\t\tscanned++;\n\t\tif (!isDormant && latestMod < threshold) {\n\t\t\tconst age = Math.floor((Date.now() - latestMod) / (24 * 60 * 60 * 1000));\n\t\t\twriteFileSync(\n\t\t\t\tjoin(dir, 'decay.dormant'),\n\t\t\t\t`Dormant since ${new Date().toISOString()} (${age} days inactive)`,\n\t\t\t\t'utf8',\n\t\t\t);\n\t\t\tdecayed++;\n\t\t}\n\t}\n\n\t// Recurse\n\tfor (const entry of entries) {\n\t\tif (entry.name.startsWith('_') || entry.name.startsWith('.')) continue;\n\t\tif (entry.isDirectory()) {\n\t\t\tconst sub = decayWalk(join(dir, entry.name), threshold, depth + 1);\n\t\t\tscanned += sub.scanned;\n\t\t\tdecayed += sub.decayed;\n\t\t}\n\t}\n\n\treturn { scanned, decayed };\n}\n","// hebbian — Batch Deduplication\n//\n// Scans all neurons in a region and merges duplicates via Jaccard similarity.\n// When a match is found (>= threshold), fires the higher-counter neuron\n// and marks the lower-counter one dormant.\n\nimport { writeFileSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { JACCARD_THRESHOLD } from './constants';\nimport { tokenize, jaccardSimilarity } from './similarity';\nimport { fireNeuron } from './fire';\nimport { scanBrain } from './scanner';\n\nexport interface DedupResult {\n\tscanned: number;\n\tmerged: number;\n}\n\n/**\n * Run batch deduplication across all regions.\n */\nexport function runDedup(brainRoot: string): DedupResult {\n\tconst brain = scanBrain(brainRoot);\n\tlet scanned = 0;\n\tlet merged = 0;\n\n\tfor (const region of brain.regions) {\n\t\tconst neurons = region.neurons.filter((n) => !n.isDormant);\n\t\tscanned += neurons.length;\n\n\t\t// O(n^2) pairwise comparison within each region\n\t\tconst consumed = new Set<number>();\n\t\tfor (let i = 0; i < neurons.length; i++) {\n\t\t\tif (consumed.has(i)) continue;\n\t\t\tconst ni = neurons[i]!;\n\t\t\tconst tokensI = tokenize(ni.name);\n\n\t\t\tfor (let j = i + 1; j < neurons.length; j++) {\n\t\t\t\tif (consumed.has(j)) continue;\n\t\t\t\tconst nj = neurons[j]!;\n\t\t\t\tconst tokensJ = tokenize(nj.name);\n\t\t\t\tconst sim = jaccardSimilarity(tokensI, tokensJ);\n\n\t\t\t\tif (sim >= JACCARD_THRESHOLD) {\n\t\t\t\t\t// Keep the one with higher counter, mark other dormant\n\t\t\t\t\tconst [keep, drop] = ni.counter >= nj.counter\n\t\t\t\t\t\t? [ni, nj] : [nj, ni];\n\n\t\t\t\t\t// Fire the keeper to absorb the dropped counter\n\t\t\t\t\tconst relKeep = `${region.name}/${keep.path}`;\n\t\t\t\t\tfireNeuron(brainRoot, relKeep);\n\n\t\t\t\t\t// Mark the dropped neuron dormant\n\t\t\t\t\twriteFileSync(\n\t\t\t\t\t\tjoin(drop.fullPath, 'dedup.dormant'),\n\t\t\t\t\t\t`Merged into ${keep.path} on ${new Date().toISOString()}`,\n\t\t\t\t\t\t'utf8',\n\t\t\t\t\t);\n\n\t\t\t\t\tconsumed.add(ni === drop ? i : j);\n\t\t\t\t\tmerged++;\n\t\t\t\t\tconsole.log(`\\u{1F500} merged: \"${drop.path}\" → \"${keep.path}\" (sim=${sim.toFixed(2)})`);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\tconsole.log(`\\u{1F9F9} dedup: scanned ${scanned} neurons, merged ${merged}`);\n\treturn { scanned, merged };\n}\n","// hebbian — Git Snapshot\n//\n// Creates a git commit of the current brain state for audit trail.\n// Only commits if there are changes.\n\nimport { execSync } from 'node:child_process';\nimport { existsSync } from 'node:fs';\nimport { join } from 'node:path';\n\n/**\n * Create a git snapshot of the brain directory.\n */\nexport function gitSnapshot(brainRoot: string): boolean {\n\t// Check if brain is inside a git repo\n\tif (!existsSync(join(brainRoot, '.git'))) {\n\t\t// Try parent directories\n\t\ttry {\n\t\t\texecSync('git rev-parse --is-inside-work-tree', { cwd: brainRoot, stdio: 'pipe' });\n\t\t} catch {\n\t\t\tconsole.log('\\u{26A0}\\uFE0F Not a git repository. Run `git init` in the brain directory first.');\n\t\t\treturn false;\n\t\t}\n\t}\n\n\ttry {\n\t\t// Check for changes\n\t\tconst status = execSync('git status --porcelain .', { cwd: brainRoot, encoding: 'utf8' });\n\t\tif (!status.trim()) {\n\t\t\tconsole.log('\\u{2705} No changes to snapshot.');\n\t\t\treturn false;\n\t\t}\n\n\t\t// Stage and commit\n\t\texecSync('git add .', { cwd: brainRoot, stdio: 'pipe' });\n\t\tconst ts = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 19);\n\t\texecSync(`git commit -m \"hebbian snapshot ${ts}\"`, { cwd: brainRoot, stdio: 'pipe' });\n\n\t\tconsole.log(`\\u{1F4F8} snapshot: committed brain state at ${ts}`);\n\t\treturn true;\n\t} catch (err: unknown) {\n\t\tconst message = err instanceof Error ? err.message : String(err);\n\t\tconsole.error(`\\u{274C} snapshot failed: ${message}`);\n\t\treturn false;\n\t}\n}\n","// hebbian — Watch Mode\n//\n// Watches the brain directory for filesystem changes and auto-recompiles\n// all tiers when changes are detected. Uses hash-based change detection\n// to avoid redundant writes.\n\nimport { watch } from 'node:fs';\nimport { scanBrain } from './scanner';\nimport { runSubsumption } from './subsumption';\nimport { writeAllTiers } from './emit';\nimport type { SubsumptionResult } from './types';\n\n/**\n * Start watching a brain directory for changes.\n * Auto-recompiles tiers when neurons are added/modified/removed.\n */\nexport async function startWatch(brainRoot: string): Promise<void> {\n\tlet lastHash = '';\n\tlet debounceTimer: ReturnType<typeof setTimeout> | null = null;\n\n\t/** Scan brain and recompile if state changed. */\n\tfunction recompile(): void {\n\t\tconst brain = scanBrain(brainRoot);\n\t\tconst result = runSubsumption(brain);\n\t\tconst hash = computeHash(result);\n\n\t\tif (hash === lastHash) return;\n\t\tlastHash = hash;\n\n\t\twriteAllTiers(brainRoot, result, brain);\n\t\tconst ts = new Date().toLocaleTimeString();\n\t\tconsole.log(`[${ts}] \\u{1F504} recompiled — ${result.firedNeurons} neurons, activation ${result.totalCounter}${result.bombSource ? ` \\u{1F4A3} BOMB: ${result.bombSource}` : ''}`);\n\t}\n\n\t// Initial compilation\n\trecompile();\n\tconsole.log(`\\u{1F440} watching: ${brainRoot}`);\n\tconsole.log(' Press Ctrl+C to stop.\\n');\n\n\t// Watch for filesystem changes\n\ttry {\n\t\tconst watcher = watch(brainRoot, { recursive: true }, (eventType, filename) => {\n\t\t\tif (!filename) return;\n\t\t\t// Ignore _index.md and _rules.md (our own output)\n\t\t\tif (filename.endsWith('_index.md') || filename.endsWith('_rules.md')) return;\n\t\t\t// Ignore hidden/internal\n\t\t\tif (filename.startsWith('.') || filename.includes('/_') || filename.includes('\\\\_')) return;\n\n\t\t\t// Debounce: wait 200ms after last change before recompiling\n\t\t\tif (debounceTimer) clearTimeout(debounceTimer);\n\t\t\tdebounceTimer = setTimeout(recompile, 200);\n\t\t});\n\n\t\t// Keep process alive\n\t\tawait new Promise<void>((resolve) => {\n\t\t\tprocess.on('SIGINT', () => {\n\t\t\t\twatcher.close();\n\t\t\t\tconsole.log('\\n\\u{1F44B} watch stopped.');\n\t\t\t\tresolve();\n\t\t\t});\n\t\t});\n\t} catch (err: unknown) {\n\t\tif (err && typeof err === 'object' && 'code' in err && err.code === 'ERR_FEATURE_UNAVAILABLE_ON_PLATFORM') {\n\t\t\tconsole.error('Recursive fs.watch not supported on this platform. Use Node.js >= 22.');\n\t\t} else {\n\t\t\tthrow err;\n\t\t}\n\t}\n}\n\n/**\n * Compute a simple hash from the subsumption result for change detection.\n */\nfunction computeHash(result: SubsumptionResult): string {\n\treturn `${result.firedNeurons}:${result.totalCounter}:${result.bombSource}:${result.activeRegions.length}`;\n}\n","// hebbian — Episode Logging (Circular Buffer)\n//\n// Writes events to hippocampus/session_log/ as memoryN.neuron files.\n// Circular buffer: max 100 entries. When full, overwrites oldest.\n//\n// Port from: NeuronFS/runtime/main.go lines 1300-1342\n\nimport { readdirSync, readFileSync, writeFileSync, mkdirSync, existsSync } from 'node:fs';\nimport { join } from 'node:path';\n\nconst MAX_EPISODES = 100;\nconst SESSION_LOG_DIR = 'hippocampus/session_log';\n\nexport interface Episode {\n\tts: string;\n\ttype: string;\n\tpath: string;\n\tdetail: string;\n}\n\n/**\n * Log an episode to the hippocampus session log.\n * Circular buffer — writes to memoryN.neuron, wraps at MAX_EPISODES.\n */\nexport function logEpisode(brainRoot: string, type: string, path: string, detail: string): void {\n\tconst logDir = join(brainRoot, SESSION_LOG_DIR);\n\tif (!existsSync(logDir)) {\n\t\tmkdirSync(logDir, { recursive: true });\n\t}\n\n\tconst nextSlot = getNextSlot(logDir);\n\tconst episode: Episode = {\n\t\tts: new Date().toISOString(),\n\t\ttype,\n\t\tpath,\n\t\tdetail,\n\t};\n\n\twriteFileSync(\n\t\tjoin(logDir, `memory${nextSlot}.neuron`),\n\t\tJSON.stringify(episode),\n\t\t'utf8',\n\t);\n}\n\n/**\n * Read all episodes from the session log, sorted by timestamp.\n */\nexport function readEpisodes(brainRoot: string): Episode[] {\n\tconst logDir = join(brainRoot, SESSION_LOG_DIR);\n\tif (!existsSync(logDir)) return [];\n\n\tconst episodes: Episode[] = [];\n\tlet entries;\n\ttry {\n\t\tentries = readdirSync(logDir);\n\t} catch {\n\t\treturn [];\n\t}\n\n\tfor (const entry of entries) {\n\t\tif (!entry.startsWith('memory') || !entry.endsWith('.neuron')) continue;\n\t\ttry {\n\t\t\tconst content = readFileSync(join(logDir, entry), 'utf8');\n\t\t\tif (content.trim()) {\n\t\t\t\tepisodes.push(JSON.parse(content) as Episode);\n\t\t\t}\n\t\t} catch {\n\t\t\t// skip malformed entries\n\t\t}\n\t}\n\n\tepisodes.sort((a, b) => a.ts.localeCompare(b.ts));\n\treturn episodes;\n}\n\n/**\n * Find the next circular buffer slot (1-based, wraps at MAX_EPISODES).\n */\nfunction getNextSlot(logDir: string): number {\n\tlet maxSlot = 0;\n\ttry {\n\t\tfor (const entry of readdirSync(logDir)) {\n\t\t\tif (entry.startsWith('memory') && entry.endsWith('.neuron')) {\n\t\t\t\tconst n = parseInt(entry.replace('memory', '').replace('.neuron', ''), 10);\n\t\t\t\tif (!isNaN(n) && n > maxSlot) maxSlot = n;\n\t\t\t}\n\t\t}\n\t} catch {}\n\n\tconst next = maxSlot + 1;\n\t// Wrap around: if we exceed max, start overwriting from 1\n\treturn next > MAX_EPISODES ? ((maxSlot % MAX_EPISODES) + 1) : next;\n}\n","// hebbian — Inbox Processing\n//\n// Parses _inbox/corrections.jsonl and auto-creates/fires neurons from\n// AI corrections. Security checks prevent path traversal. Only PM/admin\n// roles can award dopamine (inflation filter).\n//\n// Port from: NeuronFS/runtime/main.go lines 1425-1544\n\nimport { readFileSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';\nimport { join } from 'node:path';\nimport { REGIONS } from './constants';\nimport { growNeuron } from './grow';\nimport { fireNeuron } from './fire';\nimport { signalNeuron } from './signal';\nimport { logEpisode } from './episode';\n\nconst INBOX_DIR = '_inbox';\nconst CORRECTIONS_FILE = 'corrections.jsonl';\nconst DOPAMINE_ALLOWED_ROLES = ['pm', 'admin', 'lead'];\n\nexport interface Correction {\n\tts: string;\n\ttype: 'correction';\n\ttext: string;\n\tpath: string;\n\tcounter_add: number;\n\tauthor: string;\n\tdopamine?: number;\n}\n\nexport interface InboxResult {\n\tprocessed: number;\n\tskipped: number;\n\terrors: string[];\n}\n\n/**\n * Process the inbox corrections file.\n * Each line is a JSON object describing a correction to apply.\n */\nexport function processInbox(brainRoot: string): InboxResult {\n\tconst inboxPath = join(brainRoot, INBOX_DIR, CORRECTIONS_FILE);\n\n\tif (!existsSync(inboxPath)) {\n\t\treturn { processed: 0, skipped: 0, errors: [] };\n\t}\n\n\tconst content = readFileSync(inboxPath, 'utf8').trim();\n\tif (!content) {\n\t\treturn { processed: 0, skipped: 0, errors: [] };\n\t}\n\n\tconst lines = content.split('\\n').filter(Boolean);\n\tlet processed = 0;\n\tlet skipped = 0;\n\tconst errors: string[] = [];\n\n\tfor (const line of lines) {\n\t\tlet correction: Correction;\n\t\ttry {\n\t\t\tcorrection = JSON.parse(line) as Correction;\n\t\t} catch {\n\t\t\terrors.push(`Malformed JSON: ${line.slice(0, 80)}`);\n\t\t\tskipped++;\n\t\t\tcontinue;\n\t\t}\n\n\t\t// Validate required fields\n\t\tif (!correction.path || !correction.type) {\n\t\t\terrors.push(`Missing path or type: ${line.slice(0, 80)}`);\n\t\t\tskipped++;\n\t\t\tcontinue;\n\t\t}\n\n\t\t// Security: path traversal check\n\t\tif (!isPathSafe(correction.path)) {\n\t\t\terrors.push(`Path traversal blocked: ${correction.path}`);\n\t\t\tskipped++;\n\t\t\tcontinue;\n\t\t}\n\n\t\t// Security: validate region\n\t\tconst region = correction.path.split('/')[0];\n\t\tif (!region || !(REGIONS as readonly string[]).includes(region)) {\n\t\t\terrors.push(`Invalid region in path: ${correction.path}`);\n\t\t\tskipped++;\n\t\t\tcontinue;\n\t\t}\n\n\t\ttry {\n\t\t\tapplyCorrection(brainRoot, correction);\n\t\t\tprocessed++;\n\t\t} catch (err) {\n\t\t\terrors.push(`Failed to apply ${correction.path}: ${(err as Error).message}`);\n\t\t\tskipped++;\n\t\t}\n\t}\n\n\t// Clear the inbox file after processing\n\twriteFileSync(inboxPath, '', 'utf8');\n\n\tconsole.log(`📥 inbox: processed ${processed}, skipped ${skipped}`);\n\tif (errors.length > 0) {\n\t\tfor (const err of errors) {\n\t\t\tconsole.log(` ⚠️ ${err}`);\n\t\t}\n\t}\n\n\treturn { processed, skipped, errors };\n}\n\n/**\n * Apply a single correction entry.\n */\nfunction applyCorrection(brainRoot: string, correction: Correction): void {\n\tconst neuronPath = correction.path;\n\tconst fullPath = join(brainRoot, neuronPath);\n\tconst counterAdd = Math.max(1, correction.counter_add || 1);\n\n\tif (existsSync(fullPath)) {\n\t\t// Neuron exists — fire N times\n\t\tfor (let i = 0; i < counterAdd; i++) {\n\t\t\tfireNeuron(brainRoot, neuronPath);\n\t\t}\n\t} else {\n\t\t// Neuron doesn't exist — grow + fire (N-1)\n\t\tgrowNeuron(brainRoot, neuronPath);\n\t\tfor (let i = 1; i < counterAdd; i++) {\n\t\t\tfireNeuron(brainRoot, neuronPath);\n\t\t}\n\t}\n\n\t// Dopamine inflation filter: only allowed roles can award dopamine\n\tif (correction.dopamine && correction.dopamine > 0) {\n\t\tconst author = (correction.author || '').toLowerCase();\n\t\tif (DOPAMINE_ALLOWED_ROLES.includes(author)) {\n\t\t\tsignalNeuron(brainRoot, neuronPath, 'dopamine');\n\t\t}\n\t}\n\n\tlogEpisode(brainRoot, 'inbox', neuronPath, correction.text || '');\n}\n\n/**\n * Security: check path for traversal attacks.\n */\nfunction isPathSafe(path: string): boolean {\n\tif (path.includes('..')) return false;\n\tif (path.startsWith('/')) return false;\n\tif (path.includes('\\\\')) return false;\n\t// Block null bytes\n\tif (path.includes('\\0')) return false;\n\treturn true;\n}\n\n/**\n * Ensure the inbox directory and corrections file exist.\n */\nexport function ensureInbox(brainRoot: string): string {\n\tconst inboxDir = join(brainRoot, INBOX_DIR);\n\tif (!existsSync(inboxDir)) {\n\t\tmkdirSync(inboxDir, { recursive: true });\n\t}\n\tconst filePath = join(inboxDir, CORRECTIONS_FILE);\n\tif (!existsSync(filePath)) {\n\t\twriteFileSync(filePath, '', 'utf8');\n\t}\n\treturn filePath;\n}\n\n/**\n * Append a correction entry to the inbox.\n */\nexport function appendCorrection(brainRoot: string, correction: Correction): void {\n\tconst filePath = ensureInbox(brainRoot);\n\tconst line = JSON.stringify(correction) + '\\n';\n\tconst existing = readFileSync(filePath, 'utf8');\n\twriteFileSync(filePath, existing + line, 'utf8');\n}\n","// hebbian — REST API Server\n//\n// Programmatic brain manipulation via HTTP. Zero dependencies (node:http).\n// Enables external tools (n8n, webhooks, dashboards) to interact with hebbian.\n//\n// Port from: NeuronFS/runtime/main.go lines 2099-2434\n\nimport { createServer, type IncomingMessage, type ServerResponse } from 'node:http';\nimport { scanBrain } from './scanner';\nimport { runSubsumption } from './subsumption';\nimport { fireNeuron } from './fire';\nimport { rollbackNeuron } from './rollback';\nimport { growNeuron } from './grow';\nimport { signalNeuron } from './signal';\nimport { runDecay } from './decay';\nimport { runDedup } from './dedup';\nimport { writeAllTiers } from './emit';\nimport { processInbox } from './inbox';\nimport { REGIONS, REGION_ICONS, REGION_KO, type SignalType } from './constants';\nimport type { RegionName } from './constants';\n\nlet lastAPIActivity = Date.now();\n\nexport interface ReportEntry {\n\tts: string;\n\tmessage: string;\n\tpriority: 'low' | 'normal' | 'high' | 'critical';\n}\n\nconst pendingReports: ReportEntry[] = [];\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// JSON Response Builders\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\nfunction buildHealthJSON(brainRoot: string) {\n\tconst brain = scanBrain(brainRoot);\n\tconst result = runSubsumption(brain);\n\treturn {\n\t\tstatus: 'ok',\n\t\tbrain: brainRoot,\n\t\tneurons: result.totalNeurons,\n\t\tactiveNeurons: result.firedNeurons,\n\t\ttotalActivation: result.totalCounter,\n\t\tbombSource: result.bombSource || null,\n\t\tlastActivity: new Date(lastAPIActivity).toISOString(),\n\t\tuptime: process.uptime(),\n\t};\n}\n\nfunction buildBrainJSON(brainRoot: string) {\n\tconst brain = scanBrain(brainRoot);\n\tconst result = runSubsumption(brain);\n\treturn {\n\t\troot: brain.root,\n\t\tregions: brain.regions.map((region) => ({\n\t\t\tname: region.name,\n\t\t\ticon: REGION_ICONS[region.name as RegionName] || '',\n\t\t\tko: REGION_KO[region.name as RegionName] || '',\n\t\t\tpriority: region.priority,\n\t\t\thasBomb: region.hasBomb,\n\t\t\tneurons: region.neurons.map((n) => ({\n\t\t\t\tname: n.name,\n\t\t\t\tpath: n.path,\n\t\t\t\tcounter: n.counter,\n\t\t\t\tcontra: n.contra,\n\t\t\t\tdopamine: n.dopamine,\n\t\t\t\thasBomb: n.hasBomb,\n\t\t\t\thasMemory: n.hasMemory,\n\t\t\t\tisDormant: n.isDormant,\n\t\t\t\tdepth: n.depth,\n\t\t\t\tmodTime: n.modTime.getTime(),\n\t\t\t})),\n\t\t\taxons: region.axons,\n\t\t})),\n\t\tbombSource: result.bombSource || null,\n\t\tfiredNeurons: result.firedNeurons,\n\t\ttotalNeurons: result.totalNeurons,\n\t\ttotalCounter: result.totalCounter,\n\t};\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// HTTP Helpers\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\nfunction json(res: ServerResponse, data: unknown, status = 200): void {\n\tconst body = JSON.stringify(data);\n\tres.writeHead(status, {\n\t\t'Content-Type': 'application/json',\n\t\t'Access-Control-Allow-Origin': '*',\n\t\t'Access-Control-Allow-Methods': 'GET, POST, OPTIONS',\n\t\t'Access-Control-Allow-Headers': 'Content-Type',\n\t});\n\tres.end(body);\n}\n\nfunction error(res: ServerResponse, message: string, status = 400): void {\n\tjson(res, { error: message }, status);\n}\n\nasync function readBody(req: IncomingMessage): Promise<string> {\n\treturn new Promise((resolve, reject) => {\n\t\tconst chunks: Buffer[] = [];\n\t\treq.on('data', (chunk: Buffer) => chunks.push(chunk));\n\t\treq.on('end', () => resolve(Buffer.concat(chunks).toString('utf8')));\n\t\treq.on('error', reject);\n\t});\n}\n\nasync function parseJSON(req: IncomingMessage): Promise<Record<string, unknown>> {\n\tconst body = await readBody(req);\n\tif (!body.trim()) return {};\n\treturn JSON.parse(body) as Record<string, unknown>;\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// Route Handlers\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\nasync function handleRequest(\n\treq: IncomingMessage,\n\tres: ServerResponse,\n\tbrainRoot: string,\n): Promise<void> {\n\tconst url = new URL(req.url || '/', `http://${req.headers.host || 'localhost'}`);\n\tconst path = url.pathname;\n\tconst method = req.method || 'GET';\n\n\t// CORS preflight\n\tif (method === 'OPTIONS') {\n\t\tjson(res, null, 204);\n\t\treturn;\n\t}\n\n\t// Track activity on mutations\n\tconst isMutation = method === 'POST';\n\tif (isMutation) lastAPIActivity = Date.now();\n\n\ttry {\n\t\t// GET endpoints\n\t\tif (method === 'GET') {\n\t\t\tswitch (path) {\n\t\t\t\tcase '/api/health':\n\t\t\t\t\tjson(res, buildHealthJSON(brainRoot));\n\t\t\t\t\treturn;\n\t\t\t\tcase '/api/brain':\n\t\t\t\t\tjson(res, buildBrainJSON(brainRoot));\n\t\t\t\t\treturn;\n\t\t\t\tcase '/api/read': {\n\t\t\t\t\tconst region = url.searchParams.get('region');\n\t\t\t\t\tif (!region || !(REGIONS as readonly string[]).includes(region)) {\n\t\t\t\t\t\terror(res, `Invalid region. Valid: ${REGIONS.join(', ')}`);\n\t\t\t\t\t\treturn;\n\t\t\t\t\t}\n\t\t\t\t\tconst brain = scanBrain(brainRoot);\n\t\t\t\t\tconst result = runSubsumption(brain);\n\t\t\t\t\tconst regionData = result.activeRegions.find((r) => r.name === region);\n\t\t\t\t\tif (!regionData) {\n\t\t\t\t\t\terror(res, `Region \"${region}\" is blocked or empty`);\n\t\t\t\t\t\treturn;\n\t\t\t\t\t}\n\t\t\t\t\t// Auto-fire top 3 for RAG retrieval\n\t\t\t\t\tconst top3 = [...regionData.neurons]\n\t\t\t\t\t\t.filter((n) => !n.isDormant)\n\t\t\t\t\t\t.sort((a, b) => b.counter - a.counter)\n\t\t\t\t\t\t.slice(0, 3);\n\t\t\t\t\tfor (const n of top3) {\n\t\t\t\t\t\tfireNeuron(brainRoot, `${region}/${n.path}`);\n\t\t\t\t\t}\n\t\t\t\t\tjson(res, {\n\t\t\t\t\t\tregion: region,\n\t\t\t\t\t\tneurons: regionData.neurons,\n\t\t\t\t\t\tfired: top3.map((n) => n.path),\n\t\t\t\t\t});\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/reports':\n\t\t\t\t\tjson(res, { reports: pendingReports });\n\t\t\t\t\treturn;\n\t\t\t\tdefault:\n\t\t\t\t\terror(res, 'Not found', 404);\n\t\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\n\t\t// POST endpoints\n\t\tif (method === 'POST') {\n\t\t\tconst body = await parseJSON(req);\n\n\t\t\tswitch (path) {\n\t\t\t\tcase '/api/grow': {\n\t\t\t\t\tconst neuronPath = body.path as string;\n\t\t\t\t\tif (!neuronPath) { error(res, 'Missing \"path\"'); return; }\n\t\t\t\t\tconst result = growNeuron(brainRoot, neuronPath);\n\t\t\t\t\tjson(res, result);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/fire': {\n\t\t\t\t\tconst neuronPath = body.path as string;\n\t\t\t\t\tif (!neuronPath) { error(res, 'Missing \"path\"'); return; }\n\t\t\t\t\tconst counter = fireNeuron(brainRoot, neuronPath);\n\t\t\t\t\tjson(res, { path: neuronPath, counter });\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/signal': {\n\t\t\t\t\tconst neuronPath = body.path as string;\n\t\t\t\t\tconst signalType = body.type as string;\n\t\t\t\t\tif (!neuronPath || !signalType) { error(res, 'Missing \"path\" or \"type\"'); return; }\n\t\t\t\t\tsignalNeuron(brainRoot, neuronPath, signalType as SignalType);\n\t\t\t\t\tjson(res, { path: neuronPath, type: signalType });\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/rollback': {\n\t\t\t\t\tconst neuronPath = body.path as string;\n\t\t\t\t\tif (!neuronPath) { error(res, 'Missing \"path\"'); return; }\n\t\t\t\t\tconst counter = rollbackNeuron(brainRoot, neuronPath);\n\t\t\t\t\tjson(res, { path: neuronPath, counter });\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/decay': {\n\t\t\t\t\tconst days = typeof body.days === 'number' ? body.days : 30;\n\t\t\t\t\tconst result = runDecay(brainRoot, days);\n\t\t\t\t\tjson(res, result);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/dedup': {\n\t\t\t\t\tconst result = runDedup(brainRoot);\n\t\t\t\t\tjson(res, result);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/inject': {\n\t\t\t\t\tconst brain = scanBrain(brainRoot);\n\t\t\t\t\tconst result = runSubsumption(brain);\n\t\t\t\t\twriteAllTiers(brainRoot, result, brain);\n\t\t\t\t\tjson(res, { injected: true });\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/inbox': {\n\t\t\t\t\tconst result = processInbox(brainRoot);\n\t\t\t\t\tjson(res, result);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tcase '/api/report': {\n\t\t\t\t\tconst message = body.message as string;\n\t\t\t\t\tconst priority = (body.priority as string) || 'normal';\n\t\t\t\t\tif (!message) { error(res, 'Missing \"message\"'); return; }\n\t\t\t\t\tconst entry: ReportEntry = {\n\t\t\t\t\t\tts: new Date().toISOString(),\n\t\t\t\t\t\tmessage,\n\t\t\t\t\t\tpriority: priority as ReportEntry['priority'],\n\t\t\t\t\t};\n\t\t\t\t\tpendingReports.push(entry);\n\t\t\t\t\tjson(res, entry);\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tdefault:\n\t\t\t\t\terror(res, 'Not found', 404);\n\t\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\n\t\terror(res, 'Method not allowed', 405);\n\t} catch (err) {\n\t\terror(res, (err as Error).message, 500);\n\t}\n}\n\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n// Server\n// ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\n\n/**\n * Start the hebbian REST API server.\n */\nexport function startAPI(brainRoot: string, port = 9090): ReturnType<typeof createServer> {\n\tconst server = createServer((req, res) => {\n\t\thandleRequest(req, res, brainRoot).catch((err) => {\n\t\t\terror(res, (err as Error).message, 500);\n\t\t});\n\t});\n\n\tserver.listen(port, () => {\n\t\tconsole.log(`🧠 hebbian API listening on http://localhost:${port}`);\n\t\tconsole.log(` Brain: ${brainRoot}`);\n\t\tconsole.log('');\n\t\tconsole.log(' Endpoints:');\n\t\tconsole.log(' GET /api/health Process health + brain stats');\n\t\tconsole.log(' GET /api/brain Full brain state JSON');\n\t\tconsole.log(' GET /api/read?region=X Read region (auto-fires top 3)');\n\t\tconsole.log(' GET /api/reports List pending reports');\n\t\tconsole.log(' POST /api/grow {\"path\":\"cortex/...\"}');\n\t\tconsole.log(' POST /api/fire {\"path\":\"cortex/...\"}');\n\t\tconsole.log(' POST /api/signal {\"path\":\"...\",\"type\":\"dopamine\"}');\n\t\tconsole.log(' POST /api/rollback {\"path\":\"cortex/...\"}');\n\t\tconsole.log(' POST /api/decay {\"days\":30}');\n\t\tconsole.log(' POST /api/dedup Batch merge similar neurons');\n\t\tconsole.log(' POST /api/inject Force re-emit all tiers');\n\t\tconsole.log(' POST /api/inbox Process corrections inbox');\n\t\tconsole.log(' POST /api/report {\"message\":\"...\",\"priority\":\"normal\"}');\n\t});\n\n\treturn server;\n}\n\n/**\n * Get the last API activity timestamp.\n */\nexport function getLastActivity(): number {\n\treturn lastAPIActivity;\n}\n\n/**\n * Get pending reports (for external access).\n */\nexport function getPendingReports(): ReportEntry[] {\n\treturn pendingReports;\n}\n\n/**\n * Clear pending reports.\n */\nexport function clearReports(): void {\n\tpendingReports.length = 0;\n}\n","// hebbian — Claude Code Hooks Integration\n//\n// Manages Claude Code hooks in .claude/settings.local.json.\n// Uses [hebbian] statusMessage marker for ownership tracking.\n//\n// SessionStart hook: refreshes CLAUDE.md with latest brain state\n// Stop hook: digests conversation transcript for corrections\n\nimport { readFileSync, writeFileSync, existsSync, mkdirSync, readdirSync } from 'node:fs';\nimport { join, resolve } from 'node:path';\nimport { HOOK_MARKER, REGIONS } from './constants';\nimport { initBrain } from './init';\n\nconst SETTINGS_DIR = '.claude';\nconst SETTINGS_FILE = 'settings.local.json';\n\nexport interface HookStatus {\n\tinstalled: boolean;\n\tpath: string;\n\tevents: string[];\n}\n\ninterface HookEntry {\n\ttype: string;\n\tcommand: string;\n\ttimeout?: number;\n\tstatusMessage?: string;\n}\n\ninterface HookGroup {\n\tmatcher?: string;\n\thooks: HookEntry[];\n}\n\n/**\n * Install hebbian hooks into .claude/settings.local.json.\n * Deep-merges with existing settings. Uses statusMessage marker for ownership.\n */\nexport function installHooks(brainRoot: string, projectRoot?: string): void {\n\tconst root = projectRoot || process.cwd();\n\tconst resolvedBrain = resolve(brainRoot);\n\n\t// Auto-init brain if it doesn't exist\n\tif (!existsSync(resolvedBrain) || !hasBrainRegions(resolvedBrain)) {\n\t\tinitBrain(resolvedBrain);\n\t}\n\n\tconst settingsDir = join(root, SETTINGS_DIR);\n\tconst settingsPath = join(settingsDir, SETTINGS_FILE);\n\n\t// Determine if we need --brain flag\n\tconst defaultBrain = resolve(root, 'brain');\n\tconst brainFlag = resolvedBrain === defaultBrain ? '' : ` --brain ${resolvedBrain}`;\n\n\t// Read existing settings or start fresh\n\tlet settings: Record<string, unknown> = {};\n\tif (existsSync(settingsPath)) {\n\t\ttry {\n\t\t\tsettings = JSON.parse(readFileSync(settingsPath, 'utf8'));\n\t\t} catch {\n\t\t\tconsole.log(`\\u26A0\\uFE0F settings.local.json was malformed, overwriting`);\n\t\t}\n\t}\n\n\t// Ensure hooks object exists\n\tif (!settings.hooks || typeof settings.hooks !== 'object') {\n\t\tsettings.hooks = {};\n\t}\n\tconst hooks = settings.hooks as Record<string, HookGroup[]>;\n\n\t// Define hebbian hooks\n\tconst hebbianHooks: Array<{ event: string; matcher?: string; entry: HookEntry }> = [\n\t\t{\n\t\t\tevent: 'SessionStart',\n\t\t\tmatcher: 'startup|resume',\n\t\t\tentry: {\n\t\t\t\ttype: 'command',\n\t\t\t\tcommand: `hebbian emit claude${brainFlag}`,\n\t\t\t\ttimeout: 10,\n\t\t\t\tstatusMessage: `${HOOK_MARKER} refreshing brain`,\n\t\t\t},\n\t\t},\n\t\t{\n\t\t\tevent: 'Stop',\n\t\t\tentry: {\n\t\t\t\ttype: 'command',\n\t\t\t\tcommand: `hebbian digest${brainFlag}`,\n\t\t\t\ttimeout: 30,\n\t\t\t\tstatusMessage: `${HOOK_MARKER} digesting session`,\n\t\t\t},\n\t\t},\n\t];\n\n\t// Install each hook\n\tfor (const { event, matcher, entry } of hebbianHooks) {\n\t\tif (!hooks[event]) {\n\t\t\thooks[event] = [];\n\t\t}\n\n\t\t// Find existing hebbian group for this event\n\t\tconst existingIdx = hooks[event]!.findIndex((group) =>\n\t\t\tgroup.hooks.some((h) => h.statusMessage?.startsWith(HOOK_MARKER)),\n\t\t);\n\n\t\tconst group: HookGroup = {\n\t\t\t...(matcher ? { matcher } : {}),\n\t\t\thooks: [entry],\n\t\t};\n\n\t\tif (existingIdx >= 0) {\n\t\t\t// Update existing entry\n\t\t\thooks[event]![existingIdx] = group;\n\t\t} else {\n\t\t\t// Append new entry\n\t\t\thooks[event]!.push(group);\n\t\t}\n\t}\n\n\t// Write back\n\tif (!existsSync(settingsDir)) {\n\t\tmkdirSync(settingsDir, { recursive: true });\n\t}\n\twriteFileSync(settingsPath, JSON.stringify(settings, null, 2) + '\\n', 'utf8');\n\n\tconsole.log(`\\u2705 hebbian hooks installed at ${settingsPath}`);\n\tconsole.log(` SessionStart \\u2192 hebbian emit claude${brainFlag}`);\n\tconsole.log(` Stop \\u2192 hebbian digest${brainFlag}`);\n}\n\n/**\n * Remove hebbian hooks from .claude/settings.local.json.\n * Preserves non-hebbian hooks and other settings.\n */\nexport function uninstallHooks(projectRoot?: string): void {\n\tconst root = projectRoot || process.cwd();\n\tconst settingsPath = join(root, SETTINGS_DIR, SETTINGS_FILE);\n\n\tif (!existsSync(settingsPath)) {\n\t\tconsole.log('No hooks installed (settings.local.json not found)');\n\t\treturn;\n\t}\n\n\tlet settings: Record<string, unknown>;\n\ttry {\n\t\tsettings = JSON.parse(readFileSync(settingsPath, 'utf8'));\n\t} catch {\n\t\tconsole.log('settings.local.json is malformed, nothing to uninstall');\n\t\treturn;\n\t}\n\n\tif (!settings.hooks || typeof settings.hooks !== 'object') {\n\t\tconsole.log('No hooks found in settings.local.json');\n\t\treturn;\n\t}\n\n\tconst hooks = settings.hooks as Record<string, HookGroup[]>;\n\tlet removed = 0;\n\n\tfor (const event of Object.keys(hooks)) {\n\t\tconst before = hooks[event]!.length;\n\t\thooks[event] = hooks[event]!.filter(\n\t\t\t(group) => !group.hooks.some((h) => h.statusMessage?.startsWith(HOOK_MARKER)),\n\t\t);\n\t\tremoved += before - hooks[event]!.length;\n\n\t\t// Clean up empty event arrays\n\t\tif (hooks[event]!.length === 0) {\n\t\t\tdelete hooks[event];\n\t\t}\n\t}\n\n\t// Clean up empty hooks object\n\tif (Object.keys(hooks).length === 0) {\n\t\tdelete settings.hooks;\n\t}\n\n\twriteFileSync(settingsPath, JSON.stringify(settings, null, 2) + '\\n', 'utf8');\n\tconsole.log(`\\u2705 removed ${removed} hebbian hook(s) from ${settingsPath}`);\n}\n\n/**\n * Check if hebbian hooks are installed.\n */\nexport function checkHooks(projectRoot?: string): HookStatus {\n\tconst root = projectRoot || process.cwd();\n\tconst settingsPath = join(root, SETTINGS_DIR, SETTINGS_FILE);\n\n\tconst status: HookStatus = {\n\t\tinstalled: false,\n\t\tpath: settingsPath,\n\t\tevents: [],\n\t};\n\n\tif (!existsSync(settingsPath)) {\n\t\tconsole.log(`\\u274C hebbian hooks not installed (${settingsPath} not found)`);\n\t\treturn status;\n\t}\n\n\tlet settings: Record<string, unknown>;\n\ttry {\n\t\tsettings = JSON.parse(readFileSync(settingsPath, 'utf8'));\n\t} catch {\n\t\tconsole.log(`\\u274C settings.local.json is malformed`);\n\t\treturn status;\n\t}\n\n\tif (!settings.hooks || typeof settings.hooks !== 'object') {\n\t\tconsole.log(`\\u274C no hooks in ${settingsPath}`);\n\t\treturn status;\n\t}\n\n\tconst hooks = settings.hooks as Record<string, HookGroup[]>;\n\n\tfor (const event of Object.keys(hooks)) {\n\t\tconst hasHebbian = hooks[event]!.some((group) =>\n\t\t\tgroup.hooks.some((h) => h.statusMessage?.startsWith(HOOK_MARKER)),\n\t\t);\n\t\tif (hasHebbian) {\n\t\t\tstatus.events.push(event);\n\t\t}\n\t}\n\n\tstatus.installed = status.events.length > 0;\n\n\tif (status.installed) {\n\t\tconsole.log(`\\u2705 hebbian hooks installed at ${settingsPath}`);\n\t\tfor (const event of status.events) {\n\t\t\tconsole.log(` ${event} \\u2714`);\n\t\t}\n\t} else {\n\t\tconsole.log(`\\u274C hebbian hooks not found in ${settingsPath}`);\n\t}\n\n\treturn status;\n}\n\n/**\n * Check if a directory contains brain regions.\n */\nfunction hasBrainRegions(dir: string): boolean {\n\tif (!existsSync(dir)) return false;\n\ttry {\n\t\tconst entries = readdirSync(dir);\n\t\treturn (REGIONS as readonly string[]).some((r) => entries.includes(r));\n\t} catch {\n\t\treturn false;\n\t}\n}\n","// hebbian — Conversation Digest (Correction Extraction)\n//\n// Parses Claude Code conversation transcripts (JSONL) and extracts\n// user corrections via pattern matching. Writes corrections to inbox,\n// auto-processes them, and logs an audit trail.\n//\n// Correction detection is deliberately heuristic — WS3 candidate staging\n// is the quality safety net for false positives.\n\nimport { readFileSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';\nimport { join, basename } from 'node:path';\nimport { MAX_CORRECTIONS_PER_SESSION, MIN_CORRECTION_LENGTH, DIGEST_LOG_DIR } from './constants';\nimport { growNeuron } from './grow';\nimport { logEpisode } from './episode';\nimport { tokenize } from './similarity';\n\nexport interface DigestResult {\n\tcorrections: number;\n\tskipped: number;\n\ttranscriptPath: string;\n\tsessionId: string;\n}\n\nexport interface ExtractedCorrection {\n\ttext: string;\n\tpath: string;\n\tprefix: 'NO' | 'DO';\n\tkeywords: string[];\n}\n\ninterface TranscriptLine {\n\ttype?: string;\n\tmessage?: {\n\t\trole?: string;\n\t\tcontent?: string | Array<{ type: string; text?: string }>;\n\t};\n\tsessionId?: string;\n\tuuid?: string;\n}\n\n// Negation patterns — user is telling the AI NOT to do something\nconst NEGATION_PATTERNS = [\n\t/\\bdon[''\\u2019]?t\\b/i,\n\t/\\bdo not\\b/i,\n\t/\\bstop\\s+\\w+ing\\b/i,\n\t/\\bnever\\b/i,\n\t/\\binstead\\b/i,\n\t/^no[,.\\s!]/i,\n\t/\\bdon[''\\u2019]?t\\s+use\\b/i,\n\t/\\bavoid\\b/i,\n\t// Korean negation\n\t/하지\\s*마/,\n\t/안\\s*돼/,\n\t/대신/,\n\t/쓰지\\s*마/,\n\t/않/,\n];\n\n// Affirmation patterns — user is telling the AI TO do something\nconst AFFIRMATION_PATTERNS = [\n\t/\\balways\\b/i,\n\t/\\bmust\\b/i,\n\t/\\bshould\\s+always\\b/i,\n\t/\\buse\\s+\\w+\\s+instead\\b/i,\n\t// Korean affirmation\n\t/항상/,\n\t/반드시/,\n];\n\n/**\n * Parse hook input from stdin to extract transcript path and session ID.\n */\nexport function readHookInput(stdin: string): { transcriptPath: string; sessionId: string } | null {\n\tif (!stdin.trim()) return null;\n\ttry {\n\t\tconst input = JSON.parse(stdin);\n\t\tif (input.transcript_path) {\n\t\t\tconst sessionId = input.session_id || basename(input.transcript_path, '.jsonl');\n\t\t\treturn { transcriptPath: input.transcript_path, sessionId };\n\t\t}\n\t\treturn null;\n\t} catch {\n\t\treturn null;\n\t}\n}\n\n/**\n * Digest a conversation transcript and extract corrections.\n * Auto-processes inbox and writes audit log.\n */\nexport function digestTranscript(brainRoot: string, transcriptPath: string, sessionId?: string): DigestResult {\n\tif (!existsSync(transcriptPath)) {\n\t\tthrow new Error(`Transcript not found: ${transcriptPath}`);\n\t}\n\n\tconst resolvedSessionId = sessionId || basename(transcriptPath, '.jsonl');\n\n\t// Dedup check: skip if already digested\n\tconst logDir = join(brainRoot, DIGEST_LOG_DIR);\n\tconst logPath = join(logDir, `${resolvedSessionId}.jsonl`);\n\tif (existsSync(logPath)) {\n\t\tconsole.log(`\\u23ED already digested session ${resolvedSessionId}, skip`);\n\t\treturn { corrections: 0, skipped: 0, transcriptPath, sessionId: resolvedSessionId };\n\t}\n\n\t// Parse transcript\n\tconst messages = parseTranscript(transcriptPath);\n\n\t// Extract corrections\n\tconst corrections = extractCorrections(messages);\n\n\tif (corrections.length === 0) {\n\t\tconsole.log(`\\uD83D\\uDCDD digest: no corrections found in session ${resolvedSessionId}`);\n\t\t// Write empty audit log to mark as digested\n\t\twriteAuditLog(brainRoot, resolvedSessionId, []);\n\t\treturn { corrections: 0, skipped: messages.length, transcriptPath, sessionId: resolvedSessionId };\n\t}\n\n\t// Apply corrections via growNeuron (handles Jaccard dedup internally)\n\tlet applied = 0;\n\tconst auditEntries: Array<{ correction: ExtractedCorrection; applied: boolean }> = [];\n\n\tfor (const correction of corrections) {\n\t\ttry {\n\t\t\tgrowNeuron(brainRoot, correction.path);\n\t\t\tlogEpisode(brainRoot, 'digest', correction.path, correction.text);\n\t\t\tauditEntries.push({ correction, applied: true });\n\t\t\tapplied++;\n\t\t} catch (err) {\n\t\t\tconsole.log(` \\u26A0\\uFE0F failed to apply: ${correction.path} — ${(err as Error).message}`);\n\t\t\tauditEntries.push({ correction, applied: false });\n\t\t}\n\t}\n\n\t// Write audit log\n\twriteAuditLog(brainRoot, resolvedSessionId, auditEntries);\n\n\tconsole.log(`\\uD83D\\uDCDD digest: ${applied} correction(s) from session ${resolvedSessionId}`);\n\treturn {\n\t\tcorrections: applied,\n\t\tskipped: messages.length - corrections.length,\n\t\ttranscriptPath,\n\t\tsessionId: resolvedSessionId,\n\t};\n}\n\n/**\n * Parse a Claude Code conversation JSONL transcript.\n * Returns user message texts only.\n */\nfunction parseTranscript(transcriptPath: string): string[] {\n\tconst content = readFileSync(transcriptPath, 'utf8');\n\tconst lines = content.split('\\n').filter(Boolean);\n\tconst messages: string[] = [];\n\n\tfor (const line of lines) {\n\t\tlet entry: TranscriptLine;\n\t\ttry {\n\t\t\tentry = JSON.parse(line);\n\t\t} catch {\n\t\t\tcontinue;\n\t\t}\n\n\t\t// Only process user messages\n\t\tif (entry.type !== 'user') continue;\n\t\tif (!entry.message || entry.message.role !== 'user') continue;\n\n\t\tconst text = extractText(entry.message.content);\n\t\tif (text) messages.push(text);\n\t}\n\n\treturn messages;\n}\n\n/**\n * Extract text from message content (handles string or content block array).\n */\nfunction extractText(content: string | Array<{ type: string; text?: string }> | undefined): string | null {\n\tif (!content) return null;\n\tif (typeof content === 'string') return content;\n\tif (Array.isArray(content)) {\n\t\tconst texts = content\n\t\t\t.filter((block) => block.type === 'text' && block.text)\n\t\t\t.map((block) => block.text!);\n\t\treturn texts.length > 0 ? texts.join('\\n') : null;\n\t}\n\treturn null;\n}\n\n/**\n * Extract corrections from user messages using pattern matching.\n * Returns up to MAX_CORRECTIONS_PER_SESSION corrections.\n */\nexport function extractCorrections(messages: string[]): ExtractedCorrection[] {\n\tconst corrections: ExtractedCorrection[] = [];\n\n\tfor (const text of messages) {\n\t\tif (corrections.length >= MAX_CORRECTIONS_PER_SESSION) break;\n\n\t\t// Skip short messages\n\t\tif (text.length < MIN_CORRECTION_LENGTH) continue;\n\n\t\t// Skip commands (start with / or !)\n\t\tif (/^[\\/!]/.test(text.trim())) continue;\n\n\t\t// Skip questions (end with ?)\n\t\tif (text.trim().endsWith('?')) continue;\n\n\t\t// Check for correction patterns\n\t\tconst correction = detectCorrection(text);\n\t\tif (correction) {\n\t\t\tcorrections.push(correction);\n\t\t}\n\t}\n\n\treturn corrections;\n}\n\n/**\n * Detect if a message is a correction and extract structured data.\n */\nfunction detectCorrection(text: string): ExtractedCorrection | null {\n\tconst isNegation = NEGATION_PATTERNS.some((p) => p.test(text));\n\tconst isAffirmation = AFFIRMATION_PATTERNS.some((p) => p.test(text));\n\n\tif (!isNegation && !isAffirmation) return null;\n\n\tconst prefix = isNegation ? 'NO' : 'DO';\n\tconst keywords = extractKeywords(text);\n\n\tif (keywords.length === 0) return null;\n\n\t// Build neuron path: cortex/{PREFIX}_{keyword1}_{keyword2}\n\tconst pathSegment = `${prefix}_${keywords.slice(0, 4).join('_')}`;\n\tconst path = `cortex/${pathSegment}`;\n\n\treturn { text, path, prefix, keywords };\n}\n\n/**\n * Extract meaningful keywords from correction text.\n * Filters out common stop words and correction-specific words.\n */\nfunction extractKeywords(text: string): string[] {\n\tconst STOP_WORDS = new Set([\n\t\t'the', 'a', 'an', 'is', 'are', 'was', 'were', 'be', 'been', 'being',\n\t\t'have', 'has', 'had', 'do', 'does', 'did', 'will', 'would', 'could',\n\t\t'should', 'may', 'might', 'shall', 'can', 'need', 'dare', 'ought',\n\t\t'to', 'of', 'in', 'for', 'on', 'with', 'at', 'by', 'from', 'as',\n\t\t'into', 'through', 'during', 'before', 'after', 'above', 'below',\n\t\t'and', 'but', 'or', 'nor', 'not', 'so', 'yet', 'both', 'either',\n\t\t'neither', 'each', 'every', 'all', 'any', 'few', 'more', 'most',\n\t\t'other', 'some', 'such', 'no', 'only', 'own', 'same', 'than',\n\t\t'too', 'very', 'just', 'because', 'until', 'while', 'that', 'this',\n\t\t'these', 'those', 'it', 'its', 'i', 'me', 'my', 'we', 'us', 'you',\n\t\t'your', 'he', 'she', 'they', 'them', 'what', 'which', 'who', 'whom',\n\t\t// Correction-specific stop words\n\t\t'don', 'dont', 'stop', 'never', 'always', 'instead', 'use', 'avoid',\n\t\t'please', 'must', 'should', 'like', 'want', 'think',\n\t]);\n\n\tconst tokens = tokenize(text);\n\treturn tokens.filter((t) => !STOP_WORDS.has(t) && t.length > 2);\n}\n\n/**\n * Write audit log for digest session.\n */\nfunction writeAuditLog(\n\tbrainRoot: string,\n\tsessionId: string,\n\tentries: Array<{ correction: ExtractedCorrection; applied: boolean }>,\n): void {\n\tconst logDir = join(brainRoot, DIGEST_LOG_DIR);\n\tif (!existsSync(logDir)) {\n\t\tmkdirSync(logDir, { recursive: true });\n\t}\n\n\tconst logPath = join(logDir, `${sessionId}.jsonl`);\n\tconst lines = entries.map((e) =>\n\t\tJSON.stringify({\n\t\t\tts: new Date().toISOString(),\n\t\t\tpath: e.correction.path,\n\t\t\ttext: e.correction.text,\n\t\t\tprefix: e.correction.prefix,\n\t\t\tkeywords: e.correction.keywords,\n\t\t\tapplied: e.applied,\n\t\t}),\n\t);\n\n\t// Even if no entries, write empty file as dedup marker\n\twriteFileSync(logPath, lines.join('\\n') + (lines.length > 0 ? '\\n' : ''), 'utf8');\n}\n","// hebbian — Folder-as-Neuron Brain for Any AI Agent\n//\n// \"Neurons that fire together, wire together.\" — Donald Hebb (1949)\n//\n// USAGE:\n// hebbian init <path> Create brain with 7 regions\n// hebbian emit <target> [--brain <path>] Compile rules (claude/cursor/gemini/copilot/generic/all)\n// hebbian fire <neuron-path> Increment neuron counter\n// hebbian grow <neuron-path> Create neuron (with merge detection)\n// hebbian rollback <neuron-path> Decrement counter (min=1)\n// hebbian signal <type> <neuron-path> Add dopamine/bomb/memory signal\n// hebbian decay [--days N] Mark inactive neurons dormant (default 30 days)\n// hebbian watch [--brain <path>] Watch for changes + auto-recompile\n// hebbian claude install|uninstall|status Manage Claude Code hooks\n// hebbian digest [--transcript <path>] Extract corrections from conversation\n// hebbian diag Print brain diagnostics\n// hebbian stats Print brain statistics\n\nimport { parseArgs } from 'node:util';\nimport { resolve } from 'node:path';\nimport type { SignalType } from './constants';\nimport { resolveBrainRoot } from './constants';\n\nconst VERSION = '0.3.2';\n\nconst HELP = `\nhebbian v${VERSION} — Folder-as-neuron brain for any AI agent.\n\n \"Neurons that fire together, wire together.\" — Donald Hebb (1949)\n\nUSAGE:\n hebbian <command> [options]\n\nCOMMANDS:\n init <path> Create brain with 7 regions\n emit <target> [--brain <path>] Compile rules (claude/cursor/gemini/copilot/generic/all)\n fire <neuron-path> Increment neuron counter (+1)\n grow <neuron-path> Create neuron (with merge detection)\n rollback <neuron-path> Decrement neuron counter (min=1)\n signal <type> <neuron-path> Add signal (dopamine/bomb/memory)\n decay [--days N] Mark inactive neurons dormant (default 30)\n dedup Batch merge similar neurons (Jaccard >= 0.6)\n snapshot Git commit current brain state\n watch Watch for changes + auto-recompile\n api [--port N] Start REST API server (default 9090)\n inbox Process corrections inbox\n claude install|uninstall|status Manage Claude Code hooks\n digest [--transcript <path>] Extract corrections from conversation\n diag Print brain diagnostics\n stats Print brain statistics\n\nOPTIONS:\n --brain <path> Brain directory (default: $HEBBIAN_BRAIN or ./brain)\n --help, -h Show this help\n --version, -v Show version\n\nEXAMPLES:\n hebbian init ./my-brain\n hebbian grow cortex/frontend/NO_console_log --brain ./my-brain\n hebbian fire cortex/frontend/NO_console_log --brain ./my-brain\n hebbian emit claude --brain ./my-brain\n hebbian emit all\n`.trim();\n\n/** Read all data from stdin (non-blocking, returns empty string if no data). */\nfunction readStdin(): Promise<string> {\n\treturn new Promise((resolve) => {\n\t\tif (process.stdin.isTTY) {\n\t\t\tresolve('');\n\t\t\treturn;\n\t\t}\n\t\tconst chunks: Buffer[] = [];\n\t\tprocess.stdin.on('data', (chunk: Buffer) => chunks.push(chunk));\n\t\tprocess.stdin.on('end', () => resolve(Buffer.concat(chunks).toString('utf8')));\n\t\tprocess.stdin.on('error', () => resolve(''));\n\t\t// Timeout after 1s to avoid hanging\n\t\tsetTimeout(() => {\n\t\t\tprocess.stdin.destroy();\n\t\t\tresolve(Buffer.concat(chunks).toString('utf8'));\n\t\t}, 1000);\n\t});\n}\n\nasync function main(argv: string[]): Promise<void> {\n\tconst { values, positionals } = parseArgs({\n\t\targs: argv,\n\t\toptions: {\n\t\t\tbrain: { type: 'string', short: 'b' },\n\t\t\tdays: { type: 'string', short: 'd' },\n\t\t\tport: { type: 'string', short: 'p' },\n\t\t\ttranscript: { type: 'string', short: 't' },\n\t\t\thelp: { type: 'boolean', short: 'h' },\n\t\t\tversion: { type: 'boolean', short: 'v' },\n\t\t},\n\t\tallowPositionals: true,\n\t\tstrict: false,\n\t});\n\n\tif (values.version) {\n\t\tconsole.log(`hebbian v${VERSION}`);\n\t\treturn;\n\t}\n\n\tconst command = positionals[0];\n\n\tif (values.help || !command) {\n\t\tconsole.log(HELP);\n\t\treturn;\n\t}\n\n\tconst brainRoot = 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